RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8987
(173 letters)
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb,
E3-ligase, nuclear protein, chromosomal protein,
transcription regulation; 2.0A {Mus musculus} PDB:
3rpg_B 2h0d_A
Length = 108
Score = 72.2 bits (177), Expect = 3e-17
Identities = 38/87 (43%), Positives = 60/87 (68%), Gaps = 19/87 (21%)
Query: 18 RSDKLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCI 77
R+ ++ + ++NPHL+CVLC GYF++AT+I+ECLHS CK+CI
Sbjct: 3 RTTRIKITELNPHLMCVLCGGYFIDATTIIECLHSF-------------------CKTCI 43
Query: 78 VKYIKTSRYCPICDVQLNRQDPFLSLK 104
V+Y++TS+YCPICDVQ+++ P L+++
Sbjct: 44 VRYLETSKYCPICDVQVHKTRPLLNIR 70
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 72
Score = 65.2 bits (159), Expect = 6e-15
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 19/83 (22%)
Query: 17 SRSDKLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSC 76
S + ++ P++LC +C+GY ++AT+I ECLH + CKSC
Sbjct: 2 SSGSSGNLSELTPYILCSICKGYLIDATTITECLH-------------------TFCKSC 42
Query: 77 IVKYIKTSRYCPICDVQLNRQDP 99
IV++ S CP C++ +++ P
Sbjct: 43 IVRHFYYSNRCPKCNIVVHQTQP 65
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase,
nuclear protein, chromosomal protein, transcription
regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Length = 165
Score = 60.8 bits (147), Expect = 3e-12
Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 20/90 (22%)
Query: 12 EMRPTSRSDKLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVS 71
E + R ++ L+C +C + ECLH F
Sbjct: 36 EAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHR--F---------------- 77
Query: 72 VCKSCIVKYIKTS-RYCPICDVQLNRQDPF 100
C CI+ +++ + CP C +L +
Sbjct: 78 -CADCIITALRSGNKECPTCRKKLVSKRSL 106
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding,
translesion synthesis, UB conjugation pathway; 1.80A
{Homo sapiens}
Length = 99
Score = 57.9 bits (140), Expect = 6e-12
Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 23/90 (25%)
Query: 13 MRPTSRSDKL----LVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFG 68
M + S +++ ++ L C +C YF A I +C H+
Sbjct: 1 MDSLAESRWPPGLAVMKTIDDLLRCGICFEYFNIAMIIPQCSHNY--------------- 45
Query: 69 FVSVCKSCIVKYIKTSRYCPICDVQLNRQD 98
C CI K++ CP C V + D
Sbjct: 46 ----CSLCIRKFLSYKTQCPTCCVTVTEPD 71
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase,
protein binding complex; 4.80A {Homo sapiens}
Length = 149
Score = 41.2 bits (96), Expect = 3e-05
Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 20/88 (22%)
Query: 17 SRSDKLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSC 76
+ + L C++C YF+EA ++ C HS F C C
Sbjct: 51 EEVLSHMNDVLENELQCIICSEYFIEAVTL-NCAHS----------------F---CSYC 90
Query: 77 IVKYIKTSRYCPICDVQLNRQDPFLSLK 104
I +++K CPIC + + L L
Sbjct: 91 INEWMKRKIECPICRKDIKSKTYSLVLD 118
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein
of testis, proliferation potential-related protein,
protein P2P-R; NMR {Homo sapiens}
Length = 74
Score = 38.6 bits (90), Expect = 6e-05
Identities = 16/76 (21%), Positives = 24/76 (31%), Gaps = 21/76 (27%)
Query: 17 SRSDKLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSC 76
S + LLC++C+ +A I C +S + C C
Sbjct: 2 SSGSSGEDDPIPDELLCLICKDIMTDAVVIPCCGNS--Y-----------------CDEC 42
Query: 77 IVKYIKTS--RYCPIC 90
I + S CP C
Sbjct: 43 IRTALLESDEHTCPTC 58
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; HET: MSE; 2.29A {Homo
sapiens}
Length = 100
Score = 37.6 bits (87), Expect = 2e-04
Identities = 17/83 (20%), Positives = 26/83 (31%), Gaps = 20/83 (24%)
Query: 17 SRSDKLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSC 76
S D+ V + C +C +A C C C SC
Sbjct: 9 SHMDEQSVESIAEVFRCFICMEKLRDARLCPHCSKLC-------------------CFSC 49
Query: 77 IVKYIKTSRY-CPICDVQLNRQD 98
I +++ R CP C L ++
Sbjct: 50 IRRWLTEQRAQCPHCRAPLQLRE 72
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 117
Score = 38.0 bits (88), Expect = 2e-04
Identities = 18/74 (24%), Positives = 25/74 (33%), Gaps = 28/74 (37%)
Query: 31 LLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPIC 90
L C C E + C H F C +C+ I T CP+C
Sbjct: 23 LRCSRCTNILREPVCLGGCEHI--F-----------------CSNCVSDCIGTG--CPVC 61
Query: 91 -------DVQLNRQ 97
D+++NRQ
Sbjct: 62 YTPAWIQDLKINRQ 75
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 7e-04
Identities = 22/118 (18%), Positives = 35/118 (29%), Gaps = 45/118 (38%)
Query: 93 QLNRQDPFL-SLKYSYIAFASDD--------------Y------DNDTRIYEQVLQIVLR 131
QL Q+ F L FA+DD Y + ++QVL + L
Sbjct: 32 QL--QEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLT 89
Query: 132 IYLRKNVLRGT-IHQLTRCF--------------VRNVWWFYISIVIM---FHRYHPS 171
L G IH L ++N + + ++ F + S
Sbjct: 90 -EFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN---YITARIMAKRPFDKKSNS 143
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing,
mRNA splicing; NMR {Homo sapiens}
Length = 92
Score = 36.3 bits (84), Expect = 7e-04
Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 21/68 (30%)
Query: 25 RDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTS 84
+ LLC++C+ +A I C +S + C CI + S
Sbjct: 8 DPIPDELLCLICKDIMTDAVVIPCCGNS--Y-----------------CDECIRTALLES 48
Query: 85 RY--CPIC 90
CP C
Sbjct: 49 DEHTCPTC 56
>1z6u_A NP95-like ring finger protein isoform B; structural genomics
consortium, ligase, ubiquitin-protein ligase, cell cycle
regulation, SGC; 2.10A {Homo sapiens}
Length = 150
Score = 36.9 bits (85), Expect = 9e-04
Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 21/80 (26%)
Query: 12 EMRPTSRSDKLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVS 71
E+ ++ + +CV C+ + + EC H +
Sbjct: 60 EVLSHLVEGPNFLKKLEQSFMCVCCQELVYQPVTT-ECFH-------------------N 99
Query: 72 VCKSCIVKYIKTSRY-CPIC 90
VCK C+ + K + CP C
Sbjct: 100 VCKDCLQRSFKAQVFSCPAC 119
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 35.6 bits (82), Expect = 0.001
Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 20/70 (28%)
Query: 26 DVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSR 85
+ C +CR F + +C H YF C+SC +++ + +
Sbjct: 11 EEEIPFRCFICRQAFQNPV-VTKCRH------YF-------------CESCALEHFRATP 50
Query: 86 YCPICDVQLN 95
C ICD
Sbjct: 51 RCYICDQPTG 60
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative
splicing, apoptosis, cytoplasm, metal-binding, UBL
conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Length = 141
Score = 35.5 bits (81), Expect = 0.003
Identities = 15/91 (16%), Positives = 25/91 (27%), Gaps = 21/91 (23%)
Query: 19 SDKLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIV 78
S LL + LC CR +C H C C+
Sbjct: 20 SKTLLGTKLEAKYLCSACRNVLRRPF-QAQCGHRY-------------------CSFCLA 59
Query: 79 KYIKT-SRYCPICDVQLNRQDPFLSLKYSYI 108
+ + + C C + ++ L+ S
Sbjct: 60 SILSSGPQNCAACVHEGIYEEGISILESSSA 90
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.10A {Homo sapiens} PDB:
3hcu_A 2eci_A 2jmd_A
Length = 118
Score = 34.0 bits (78), Expect = 0.007
Identities = 16/78 (20%), Positives = 23/78 (29%), Gaps = 21/78 (26%)
Query: 24 VRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIK- 82
+ C +C EA C H CK+CI+K I+
Sbjct: 12 DPPLESKYECPICLMALREAVQT-PCGHRF-------------------CKACIIKSIRD 51
Query: 83 TSRYCPICDVQLNRQDPF 100
CP+ + L F
Sbjct: 52 AGHKCPVDNEILLENQLF 69
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA
repair, ring finger domain, metal binding, DNA
replication; 1.75A {Homo sapiens}
Length = 124
Score = 33.8 bits (77), Expect = 0.008
Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 21/88 (23%)
Query: 4 NSITYNAIEMRPTSRSDKLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFC 63
N + + + + +L + V C+ C+ + C H
Sbjct: 26 NEVLASLKDRPASGSPFQLFLSKVEETFQCICCQELVFRPITT-VCQH------------ 72
Query: 64 KLLFGFVSVCKSCIVKYIKTSRY-CPIC 90
+VCK C+ + + + CP C
Sbjct: 73 -------NVCKDCLDRSFRAQVFSCPAC 93
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 66
Score = 30.9 bits (70), Expect = 0.035
Identities = 14/78 (17%), Positives = 21/78 (26%), Gaps = 21/78 (26%)
Query: 24 VRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKT 83
V+ V C C EC H C+SC+ + +
Sbjct: 9 VKTVEDKYKCEKCHLVLCSPKQT-ECGHRF-------------------CESCMAALLSS 48
Query: 84 SR-YCPICDVQLNRQDPF 100
S C C + + F
Sbjct: 49 SSPKCTACQESIVKDKVF 66
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 69
Score = 29.9 bits (67), Expect = 0.088
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 73 CKSCIVKYIKTSRYCPIC 90
C C+ +K + CP C
Sbjct: 45 CSQCLRDSLKNANTCPTC 62
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid
herpesvirus 1} SCOP: g.44.1.1
Length = 68
Score = 29.7 bits (67), Expect = 0.089
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 19/58 (32%)
Query: 33 CVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPIC 90
C +C + + CLH F C CI ++I+ + CP+C
Sbjct: 8 CPICLEDPSNYSMALPCLH--------------AF-----CYVCITRWIRQNPTCPLC 46
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring,
ATP-binding, chromosomal protein, coiled coil, DNA
damage; 2.31A {Saccharomyces cerevisiae}
Length = 267
Score = 31.1 bits (69), Expect = 0.13
Identities = 13/91 (14%), Positives = 28/91 (30%), Gaps = 23/91 (25%)
Query: 12 EMRPTSRSDKLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVS 71
+++ + D L + L C + + +C H
Sbjct: 163 DLQNPADEDDLQIEGGKIELTCPITCKPYEAPLISRKCNHVF------------------ 204
Query: 72 VCKSCIVKYIKT--SRYCPI--CDVQLNRQD 98
+ I Y++ +R CP C ++ +D
Sbjct: 205 -DRDGIQNYLQGYTTRDCPQAACSQVVSMRD 234
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.4 bits (70), Expect = 0.14
Identities = 8/51 (15%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Query: 79 KYIKTSRYCPICDVQLNRQDPFLSLKYSYIAFASDDYDNDTRIYEQVLQIV 129
K++ + I + LN +P K + + + I +L ++
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKM-FDRLSV--FPPSAHIPTILLSLI 395
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding;
HET: SUC; 1.50A {Homo sapiens}
Length = 64
Score = 29.0 bits (65), Expect = 0.16
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 73 CKSCIVKYIKTSRYCPICDVQLNRQD 98
C C+ +K + CP C ++N +
Sbjct: 33 CSQCLRDSLKNANTCPTCRKKINHKR 58
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA
damage, chromatin regulator, chromosomal protein, DNA
repair, metal-binding; 2.12A {Homo sapiens}
Length = 115
Score = 29.9 bits (67), Expect = 0.16
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 21/61 (34%)
Query: 31 LLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTS-RYCPI 89
C +C VE ++ C H+ +CK C ++ + CP
Sbjct: 16 CQCGICMEILVEPVTL-PCNHT-------------------LCKPCFQSTVEKASLCCPF 55
Query: 90 C 90
C
Sbjct: 56 C 56
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase,
ubiquitylation, sumoylation, zinc-FI metal binding
protein; 1.80A {Rattus norvegicus}
Length = 71
Score = 29.0 bits (65), Expect = 0.17
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 73 CKSCIVKYIKTSRYCPICDVQLNRQD 98
C C+ +K + CP C ++N +
Sbjct: 40 CSQCLRDSLKNANTCPTCRKKINHKR 65
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc
binuclear cluster, zinc finger, DNA-binding protein;
2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Length = 116
Score = 29.9 bits (67), Expect = 0.17
Identities = 12/69 (17%), Positives = 19/69 (27%), Gaps = 21/69 (30%)
Query: 23 LVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIK 82
+ C +C + C H C+ CI++ +K
Sbjct: 16 FPAHFVKSISCQICEHILADPVET-SCKH-------------------LFCRICILRCLK 55
Query: 83 T-SRYCPIC 90
YCP C
Sbjct: 56 VMGSYCPSC 64
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 28.9 bits (65), Expect = 0.18
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 73 CKSCIVKYIKTSRYCPICDVQLNRQD 98
C+ CI K+ R CPIC +Q+ +
Sbjct: 37 CQKCIDKWSDRHRNCPICRLQMTGAN 62
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 30.9 bits (69), Expect = 0.19
Identities = 16/113 (14%), Positives = 37/113 (32%), Gaps = 14/113 (12%)
Query: 1 MKYNSITYNAIEMRPTSRSDKLLVRDVNPHLLCVLCRGYFVEATSIVECL----HSCDFV 56
N + + ++++L + V L + + +I+E +
Sbjct: 120 NILNLVDQLKGKKMRKKEAEQVLQKFVQNKWLIEKEGEFTLHGRAILEMEQYIRETYPDA 179
Query: 57 SYFSHFCKLLFGFVSVCKS--------CIVKYIKTSR--YCPICDVQLNRQDP 99
+ C L C++ C+ KY +++ CP C+ + P
Sbjct: 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 232
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 28.6 bits (64), Expect = 0.26
Identities = 4/18 (22%), Positives = 7/18 (38%)
Query: 73 CKSCIVKYIKTSRYCPIC 90
C C+ + C +C
Sbjct: 38 CYLCVKGASWLGKRCALC 55
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3
ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2
PDB: 1n87_A
Length = 61
Score = 28.5 bits (64), Expect = 0.27
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 73 CKSCIVKYIKTSRYCPICDVQLNRQD 98
KS + +Y+K + PI + L+ ++
Sbjct: 27 EKSLLEQYVKDTGNDPITNEPLSIEE 52
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin
ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB:
2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A
2ldr_A*
Length = 389
Score = 29.7 bits (66), Expect = 0.46
Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 21/89 (23%)
Query: 12 EMRPTSRSDKLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVS 71
++ T +L + LC +C + I C H
Sbjct: 314 HIKVTQEQYELYCEMGSTFQLCKICAENDKDVK-IEPCGHLM------------------ 354
Query: 72 VCKSCIVKYIKT-SRYCPICDVQLNRQDP 99
C SC+ + ++ + CP C ++ +P
Sbjct: 355 -CTSCLTSWQESEGQGCPFCRCEIKGTEP 382
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 58
Score = 27.3 bits (61), Expect = 0.59
Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 23/64 (35%)
Query: 30 HLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKY---IKTSRY 86
C +C Y E I EC H+ CK+CI ++ ++
Sbjct: 15 EASCSVCLEYLKEPVII-ECGHN-------------------FCKACITRWWEDLERDFP 54
Query: 87 CPIC 90
CP+C
Sbjct: 55 CPVC 58
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex,
chimera; 2.21A {Rattus norvegicus}
Length = 133
Score = 28.6 bits (63), Expect = 0.64
Identities = 13/88 (14%), Positives = 29/88 (32%), Gaps = 13/88 (14%)
Query: 11 IEMRPTSRSDKLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFV 70
+ + + + + C +C + E + S + C +F
Sbjct: 53 TCRKKINHKRYHPIYIGSGTVSCPICMDGYSEIVQNGRLIVSTE--------CGHVF--- 101
Query: 71 SVCKSCIVKYIKTSRYCPICDVQLNRQD 98
C C+ +K + CP C ++N +
Sbjct: 102 --CSQCLRDSLKNANTCPTCRKKINHKR 127
Score = 25.1 bits (54), Expect = 9.6
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 71 SVCKSCIVKYIKTSRYCPICDVQLNRQDPF 100
C C+ +K + CP C ++N +
Sbjct: 35 VFCSQCLRDSLKNANTCPTCRKKINHKRYH 64
>2ecw_A Tripartite motif-containing protein 30; metal binding protein,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 85
Score = 27.3 bits (61), Expect = 0.82
Identities = 13/66 (19%), Positives = 19/66 (28%), Gaps = 26/66 (39%)
Query: 31 LLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKY------IKTS 84
+ C +C E S +C H S C++CI
Sbjct: 20 VTCPICLELLKEPVSA-DCNH-------------------SFCRACITLNYESNRNTDGK 59
Query: 85 RYCPIC 90
CP+C
Sbjct: 60 GNCPVC 65
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1;
RCHY1, ring domain, zinc-binding domain, structural
genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Length = 55
Score = 26.5 bits (59), Expect = 1.0
Identities = 10/58 (17%), Positives = 18/58 (31%), Gaps = 16/58 (27%)
Query: 33 CVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPIC 90
C +C + + L C L ++C + +K CP+C
Sbjct: 8 CPICLEDIHTSRVVAHVLP-----------CGHLL-----HRTCYEEMLKEGYRCPLC 49
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 26.8 bits (59), Expect = 1.1
Identities = 11/72 (15%), Positives = 21/72 (29%), Gaps = 21/72 (29%)
Query: 33 CVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRY--CPIC 90
C +C ++ S C + C+ KY +++ CP C
Sbjct: 18 CNICHSLLIQGQSCETCGI-------------------RMHLPCVAKYFQSNAEPRCPHC 58
Query: 91 DVQLNRQDPFLS 102
+ + P
Sbjct: 59 NDYWPHEIPKSG 70
>2ecv_A Tripartite motif-containing protein 5; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 26.8 bits (60), Expect = 1.2
Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 26/66 (39%)
Query: 31 LLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKY------IKTS 84
+ C +C + S+ +C HS F C++C+ K
Sbjct: 20 VTCPICLELLTQPLSL-DCGHS--F-----------------CQACLTANHKKSMLDKGE 59
Query: 85 RYCPIC 90
CP+C
Sbjct: 60 SSCPVC 65
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 112
Score = 27.4 bits (61), Expect = 1.3
Identities = 16/63 (25%), Positives = 21/63 (33%), Gaps = 23/63 (36%)
Query: 31 LLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKY---IKTSRYC 87
L C +C E S +C H F CK C++K K C
Sbjct: 22 LECPICLELIKEPVST-KCDHI----------------F---CKFCMLKLLNQKKGPSQC 61
Query: 88 PIC 90
P+C
Sbjct: 62 PLC 64
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 26.6 bits (59), Expect = 1.3
Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 23/63 (36%)
Query: 31 LLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKY---IKTSRYC 87
++C +C + +I +C H+ C CI + C
Sbjct: 21 VICPICLDILQKPVTI-DCGHN-------------------FCLKCITQIGETSCGFFKC 60
Query: 88 PIC 90
P+C
Sbjct: 61 PLC 63
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA
complex, DNA-binding protein- complex; HET: DNA 3DR;
5.93A {Mus musculus}
Length = 117
Score = 27.5 bits (60), Expect = 1.3
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
Query: 33 CVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVC--KSCIVKYIKTSRYCPIC 90
C +CR + + S S C + +G + CI +++KT + CP+
Sbjct: 51 CAICR----NHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 106
>1bvp_1 Bluetongue virus coat protein VP7; trimer, viral protein; 2.60A
{Bluetongue virus} SCOP: a.115.1.1 b.19.1.1 PDB: 2btv_P
Length = 349
Score = 28.2 bits (62), Expect = 1.6
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 1 MKYNSITYNAIEMRPTSRSDK 21
+YN +T + MRPTS + +
Sbjct: 38 NRYNGLTLRGVTMRPTSLAQR 58
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 63
Score = 25.8 bits (57), Expect = 2.4
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 23/63 (36%)
Query: 31 LLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSR---YC 87
++C +C + +I +C H+ C CI + +TS C
Sbjct: 21 VICPICLDILQKPVTI-DCGHN-------------------FCLKCITQIGETSCGFFKC 60
Query: 88 PIC 90
P+C
Sbjct: 61 PLC 63
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron
transfer, DIIR center, oxidoreductase; 1.40A
{Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1
PDB: 1yv1_A 1yux_A
Length = 202
Score = 27.4 bits (60), Expect = 2.4
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 47 VECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYI---KTSRYCPICDV 92
E +H+ +++ ++ +C C YI + CPIC
Sbjct: 148 AESVHAERYLAAYNDIDAPDDDKFHLCPIC--GYIHKGEDFEKCPICFR 194
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of
EIF4E, cytoplasm, HOST-virus interaction, lipoprotein,
membrane; NMR {Lassa virus josiah}
Length = 99
Score = 26.3 bits (57), Expect = 2.7
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 72 VCKSCIVKYIKTSRYCPICDVQLN 95
+C +C+ + S CPIC + L
Sbjct: 49 LCLNCLTLLLSVSNRCPICKMPLP 72
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.44.1.2
Length = 98
Score = 26.3 bits (58), Expect = 2.7
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 68 GFVSVCKSCIVKYIKTSRYCPICDVQLNRQD--PFLSLK 104
V+V +S I +++ + + P L P LK
Sbjct: 41 SRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELK 79
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene,
phosphorylation, alternative splicing, HOST-virus
interaction, UBL conjugation pathway, zinc-finger,
polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB:
2vjf_A* 2hdp_A
Length = 64
Score = 25.5 bits (56), Expect = 2.8
Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 19/67 (28%)
Query: 25 RDVNPHLLCVLCRGYFVEATSI-VECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKT 83
+N CV+C+G + + H C +C K K
Sbjct: 3 LPLNAIEPCVICQGRPKNGCIVHGKTGHLM------------------ACFTCAKKLKKR 44
Query: 84 SRYCPIC 90
++ CP+C
Sbjct: 45 NKPCPVC 51
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 74
Score = 25.5 bits (56), Expect = 3.3
Identities = 5/18 (27%), Positives = 13/18 (72%)
Query: 73 CKSCIVKYIKTSRYCPIC 90
+ C++K+++ + CP+C
Sbjct: 41 HRKCLIKWLEVRKVCPLC 58
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain,
tripartite motif protein 34, interferon- responsive
finger protein 1; NMR {Homo sapiens}
Length = 79
Score = 25.3 bits (56), Expect = 3.7
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 27/67 (40%)
Query: 31 LLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSR----- 85
+ C +C E S+ +C HS C++CI K +
Sbjct: 13 VTCPICLELLTEPLSL-DCGHS--L-----------------CRACITVSNKEAVTSMGG 52
Query: 86 --YCPIC 90
CP+C
Sbjct: 53 KSSCPVC 59
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4),
metal binding protein; NMR {Homo sapiens} SCOP:
g.44.1.1
Length = 65
Score = 25.3 bits (55), Expect = 4.0
Identities = 7/29 (24%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 71 SVCKSCIVK-YIKTSRYCPICDVQLNRQD 98
++C+SC+ +++ + CP C L + +
Sbjct: 29 TLCESCVDLLFVRGAGNCPECGTPLRKSN 57
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 26.6 bits (58), Expect = 4.2
Identities = 17/82 (20%), Positives = 25/82 (30%), Gaps = 21/82 (25%)
Query: 20 DKLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVK 79
D + C +C EA C H CK+CI+K
Sbjct: 8 DVEFDPPLESKYECPICLMALREAVQT-PCGHRF-------------------CKACIIK 47
Query: 80 YIKTSR-YCPICDVQLNRQDPF 100
I+ + CP+ + L F
Sbjct: 48 SIRDAGHKCPVDNEILLENQLF 69
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus
interaction, receptor, UBL conjugation, UBL conjugation
pathway, acetylation, cytoplasm; 2.60A {Homo sapiens}
SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D
4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Length = 106
Score = 25.9 bits (56), Expect = 4.2
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
Query: 33 CVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVC--KSCIVKYIKTSRYCPIC 90
C +CR + + S S C + +G + CI +++KT + CP+
Sbjct: 40 CAICR----NHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 95
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT-
interacting protein, ring domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 25.4 bits (56), Expect = 4.5
Identities = 7/23 (30%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
Query: 71 SVCKSCIVKYIKTSRY---CPIC 90
++C+ C+ K + +S CP C
Sbjct: 40 TICRQCLEKLLASSINGVRCPFC 62
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase,
Zn binding domain, metal zinc, zinc-finger, metal
binding protein; NMR {Homo sapiens}
Length = 69
Score = 24.6 bits (54), Expect = 6.4
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 74 KSCIVKYIKTSRYCPICDVQLNRQDP 99
+ C+ +++ T++ CPIC V + Q P
Sbjct: 41 QVCVDQWLITNKKCPICRVDIEAQLP 66
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative
splicing, HOST-virus interaction, UBL conjugation
pathway, zinc-finger, polymorphism; HET: FLC; 2.20A
{Homo sapiens} PDB: 2vjf_B*
Length = 63
Score = 24.4 bits (53), Expect = 6.8
Identities = 12/60 (20%), Positives = 14/60 (23%), Gaps = 19/60 (31%)
Query: 32 LCVLCRGYFVEATSI-VECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPIC 90
C LC + I H C C + K CPIC
Sbjct: 9 PCSLCEKRPRDGNIIHGRTGHLV------------------TCFHCARRLKKAGASCPIC 50
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A
{Caldicellulosiruptor bescii}
Length = 196
Score = 25.7 bits (56), Expect = 8.6
Identities = 10/26 (38%), Positives = 11/26 (42%), Gaps = 5/26 (19%)
Query: 136 KNVLRGT-----IHQLTRCFVRNVWW 156
KNV+ G IH V NV W
Sbjct: 57 KNVIIGAPGCDGIHCYGDNVVENVVW 82
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline,
low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1
Length = 197
Score = 25.4 bits (55), Expect = 9.4
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 5/26 (19%)
Query: 136 KNVLRGT-----IHQLTRCFVRNVWW 156
KNV+ G +H C + NV W
Sbjct: 53 KNVVIGAPAADGVHCYGDCTITNVIW 78
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.332 0.143 0.467
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,631,472
Number of extensions: 142092
Number of successful extensions: 493
Number of sequences better than 10.0: 1
Number of HSP's gapped: 460
Number of HSP's successfully gapped: 72
Length of query: 173
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 86
Effective length of database: 4,272,666
Effective search space: 367449276
Effective search space used: 367449276
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 54 (25.0 bits)