RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8987
(173 letters)
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 29.9 bits (67), Expect = 0.027
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 19/58 (32%)
Query: 33 CVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPIC 90
C +C + + CLH+ C CI ++I+ + CP+C
Sbjct: 8 CPICLEDPSNYSMALPCLHAF-------------------CYVCITRWIRQNPTCPLC 46
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 29.2 bits (65), Expect = 0.065
Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 21/89 (23%)
Query: 12 EMRPTSRSDKLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVS 71
++ T +L + LC +C + I C H
Sbjct: 5 HIKVTQEQYELYCEMGSTFQLCKICAENDKDVK-IEPCGHLM------------------ 45
Query: 72 VCKSCIVKYIKT-SRYCPICDVQLNRQDP 99
C SC+ + ++ + CP C ++ +P
Sbjct: 46 -CTSCLTSWQESEGQGCPFCRCEIKGTEP 73
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein
1 (RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 29.5 bits (66), Expect = 0.068
Identities = 17/85 (20%), Positives = 24/85 (28%), Gaps = 25/85 (29%)
Query: 19 SDKLL----VRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCK 74
S KLL + C +C + C H C+
Sbjct: 8 STKLLAVDFPAHFVKSISCQICEHILADPV-ETSCKHLF-------------------CR 47
Query: 75 SCIVKYIKT-SRYCPICDVQLNRQD 98
CI++ +K YCP C D
Sbjct: 48 ICILRCLKVMGSYCPSCRYPCFPTD 72
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 26.4 bits (58), Expect = 0.50
Identities = 8/58 (13%), Positives = 15/58 (25%), Gaps = 16/58 (27%)
Query: 33 CVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPIC 90
C +C + C F C+ ++ + CP+C
Sbjct: 8 CAVCLAELEDGEEARFLPR-----------CGHGF-----HAECVDMWLGSHSTCPLC 49
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 27.1 bits (59), Expect = 0.55
Identities = 14/76 (18%), Positives = 20/76 (26%), Gaps = 21/76 (27%)
Query: 24 VRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKT 83
+ + L C C E + C H C +C+ I
Sbjct: 16 LDRLEKLLRCSRCTNILREPVCLGGCEHIF-------------------CSNCVSDCIG- 55
Query: 84 SRYCPICDVQLNRQDP 99
CP+C QD
Sbjct: 56 -TGCPVCYTPAWIQDL 70
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 26.3 bits (57), Expect = 0.87
Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 33 CVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPIC 90
C +CR + ++ + + + CI +++KT + CP+
Sbjct: 24 CAICRNHIMDLCIECQANQASATSEE--CTVAWGVCNHAFHFHCISRWLKTRQVCPLD 79
>d1bvp11 a.115.1.1 (1:1-120,1:255-349) BTV vp7 {Bluetongue virus
[TaxId: 40051]}
Length = 215
Score = 25.6 bits (56), Expect = 2.7
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 1 MKYNSITYNAIEMRPTSRSDK 21
+YN +T + MRPTS + +
Sbjct: 38 NRYNGLTLRGVTMRPTSLAQR 58
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 24.0 bits (51), Expect = 3.5
Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 16/67 (23%)
Query: 33 CVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKT-SRYCPICD 91
C C+ S+ ++ C +C+SC+ + CP C
Sbjct: 6 CPRCKTTKYRNPSLKLMVNVCGHT---------------LCESCVDLLFVRGAGNCPECG 50
Query: 92 VQLNRQD 98
L + +
Sbjct: 51 TPLRKSN 57
>d3frua2 d.19.1.1 (A:1-178) Fc (IgG) receptor, alpha-1 and alpha-2
domains {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 178
Score = 25.3 bits (55), Expect = 3.6
Identities = 11/91 (12%), Positives = 26/91 (28%), Gaps = 24/91 (26%)
Query: 98 DPFLSLKYSYIAFAS--------------DD-----YDNDTRIYEQVLQIVLRIYLRKNV 138
+P L L Y A + Y+N + + ++ +N
Sbjct: 2 EPRLPLMYHLAAVSDLSTGLPSFWATGWLGAQQYLTYNNLRQEADPCGA-----WIWENQ 56
Query: 139 LRGTIHQLTRCFVRNVWWFYISIVIMFHRYH 169
+ + T F +I + ++ +
Sbjct: 57 VSWYWEKETTDLKSKEQLFLEAIRTLENQIN 87
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15
[TaxId: 1409]}
Length = 197
Score = 25.1 bits (55), Expect = 3.8
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 5/26 (19%)
Query: 136 KNVLRGT-----IHQLTRCFVRNVWW 156
KNV+ G +H C + NV W
Sbjct: 53 KNVVIGAPAADGVHCYGDCTITNVIW 78
>d1kfwa1 c.1.8.5 (A:10-327,A:389-444) Psychrophilic chitinase B
{Arthrobacter sp., tad20 [TaxId: 1667]}
Length = 374
Score = 25.6 bits (55), Expect = 3.9
Identities = 12/87 (13%), Positives = 24/87 (27%), Gaps = 8/87 (9%)
Query: 38 GYFVE-----ATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPICDV 92
GYF + + L +H + + F ++ + ++ +
Sbjct: 13 GYFAQWGVYGRAFQAKQLDVSGTAKNLTH---INYSFGNINNQTLTCFMANKAQGTGPNG 69
Query: 93 QLNRQDPFLSLKYSYIAFASDDYDNDT 119
D + Y A S DT
Sbjct: 70 SDGAGDAWADFGMGYAADKSVSGKADT 96
>d1nxca_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 467
Score = 25.4 bits (55), Expect = 4.8
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 10/48 (20%)
Query: 77 IVKYIKTSR-YCPICDV------QLNRQDPFL---SLKYSYIAFASDD 114
+ + + + Y + DV + Q F +LKY Y+ F+ DD
Sbjct: 400 LESHCRVNGGYSGLRDVYIARESYDDVQQSFFLAETLKYLYLIFSDDD 447
>d2ri9a1 a.102.2.1 (A:1036-1510) Class I alpha-1;2-mannosidase,
catalytic domain {Fungus (Penicillium citrinum) [TaxId:
5077]}
Length = 475
Score = 24.6 bits (53), Expect = 7.1
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 11/49 (22%)
Query: 77 IVKYIKTSR-YCPICDV-------QLNRQDPFL---SLKYSYIAFASDD 114
I +T + + DV + + Q+ FL +KYSY+A + D
Sbjct: 402 INSTCRTDSGFAAVSDVNKANGGSKYDNQESFLFAEVMKYSYLAHSEDA 450
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 56
Score = 22.8 bits (48), Expect = 8.1
Identities = 9/68 (13%), Positives = 20/68 (29%), Gaps = 19/68 (27%)
Query: 31 LLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPIC 90
+LC + + KS + +Y+K + PI
Sbjct: 1 MLCAISGKVPRRPVLSPKSRTIF-------------------EKSLLEQYVKDTGNDPIT 41
Query: 91 DVQLNRQD 98
+ L+ ++
Sbjct: 42 NEPLSIEE 49
>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different
fingers {Fruit fly (Drosophila melanogaster) [TaxId:
7227]}
Length = 36
Score = 22.2 bits (47), Expect = 8.9
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 84 SRYCPICDVQLNRQDPFLSLKYSY 107
+YC CD+ N +L+ K Y
Sbjct: 8 KKYCSTCDISFNYVKTYLAHKQFY 31
>d1sqda1 d.32.1.3 (A:14-180) 4-hydroxyphenylpyruvate dioxygenase,
HppD {Mouse-ear cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 167
Score = 24.0 bits (51), Expect = 8.9
Identities = 9/74 (12%), Positives = 17/74 (22%)
Query: 96 RQDPFLSLKYSYIAFASDDYDNDTRIYEQVLQIVLRIYLRKNVLRGTIHQLTRCFVRNVW 155
+ D F ++ +I F D N R + L + + +
Sbjct: 4 KSDKFKVKRFHHIEFWCGDATNVARRFSWGLGMRFSAKSDLSTGNMVHASYLLTSGDLRF 63
Query: 156 WFYISIVIMFHRYH 169
F
Sbjct: 64 LFTAPYSPSLSAGE 77
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.332 0.143 0.467
Gapped
Lambda K H
0.267 0.0562 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 680,990
Number of extensions: 30409
Number of successful extensions: 158
Number of sequences better than 10.0: 1
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 29
Length of query: 173
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 94
Effective length of database: 1,322,926
Effective search space: 124355044
Effective search space used: 124355044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 50 (23.4 bits)