BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8988
         (133 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2QL2|B Chain B, Crystal Structure Of The Basic-Helix-Loop-Helix Domains
          Of The Heterodimer E47NEUROD1 BOUND TO DNA
 pdb|2QL2|D Chain D, Crystal Structure Of The Basic-Helix-Loop-Helix Domains
          Of The Heterodimer E47NEUROD1 BOUND TO DNA
          Length = 60

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 31/44 (70%)

Query: 55 MFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELL 98
          M  LN A D LR+ VP ++  ++LS+IETLRLA  YI  +SE+L
Sbjct: 14 MHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL 57


>pdb|4AYA|A Chain A, Crystal Structure Of Id2 Hlh Homodimer At 2.1a
          Resolution
 pdb|4AYA|B Chain B, Crystal Structure Of Id2 Hlh Homodimer At 2.1a
          Resolution
          Length = 97

 Score = 35.8 bits (81), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 25/37 (67%)

Query: 55 MFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYI 91
          ++N+N+ + KL+  VP+    K++S++E L+  I YI
Sbjct: 37 LYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYI 73


>pdb|3G02|A Chain A, Structure Of Enantioselective Mutant Of Epoxide Hydrolase
           From Aspergillus Niger Generated By Directed Evolution
 pdb|3G02|B Chain B, Structure Of Enantioselective Mutant Of Epoxide Hydrolase
           From Aspergillus Niger Generated By Directed Evolution
          Length = 408

 Score = 28.5 bits (62), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 4/39 (10%)

Query: 97  LLHGTPNGSTSGSPIYQMSQREY----IPYTALVPTYPA 131
           LLHG P       PI Q+ + EY    +P+  +VP+ P 
Sbjct: 114 LLHGWPGSFVEFYPILQLFREEYTPETLPFHLVVPSLPG 152


>pdb|1QO7|A Chain A, Structure Of Aspergillus Niger Epoxide Hydrolase
 pdb|1QO7|B Chain B, Structure Of Aspergillus Niger Epoxide Hydrolase
 pdb|3G0I|A Chain A, Complex Of Aspergillus Niger Epoxide Hydrolase With
           Valpromide (2-Propylpentanamide)
 pdb|3G0I|B Chain B, Complex Of Aspergillus Niger Epoxide Hydrolase With
           Valpromide (2-Propylpentanamide)
          Length = 394

 Score = 27.7 bits (60), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 17/75 (22%)

Query: 74  YEKRLSRI-----ETLRLAITYISFMSE--------LLHGTPNGSTSGSPIYQMSQREY- 119
           +E RL+       E   L I + +  SE        LLHG P       PI Q+ + EY 
Sbjct: 75  FEARLNSFPQFTTEIEGLTIHFAALFSEREDAVPIALLHGWPGSFVEFYPILQLFREEYT 134

Query: 120 ---IPYTALVPTYPA 131
              +P+  +VP+ P 
Sbjct: 135 PETLPFHLVVPSLPG 149


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.134    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,509,068
Number of Sequences: 62578
Number of extensions: 73510
Number of successful extensions: 126
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 122
Number of HSP's gapped (non-prelim): 4
length of query: 133
length of database: 14,973,337
effective HSP length: 88
effective length of query: 45
effective length of database: 9,466,473
effective search space: 425991285
effective search space used: 425991285
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)