BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8988
(133 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VGJ5|FER3_DROME Protein Fer3 OS=Drosophila melanogaster GN=fer3 PE=2 SV=2
Length = 195
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/98 (73%), Positives = 79/98 (80%), Gaps = 2/98 (2%)
Query: 34 TRRRVATLAQRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISF 93
TRRRVA++AQRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYI F
Sbjct: 78 TRRRVASMAQRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYIGF 137
Query: 94 MSELLHGTP-NGSTSGSPIY-QMSQREYIPYTALVPTY 129
M+ELL GTP N S S +Y M+ P A+ P +
Sbjct: 138 MAELLSGTPSNSHKSRSDVYGSMNGHHQAPPPAIHPHH 175
>sp|Q96RJ6|FER3L_HUMAN Fer3-like protein OS=Homo sapiens GN=FERD3L PE=2 SV=1
Length = 166
Score = 115 bits (289), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 56/67 (83%), Positives = 61/67 (91%)
Query: 35 RRRVATLAQRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFM 94
R+RV T AQR+AANIRER+RMFNLNEAFD+LRRKVPTFAYEKRLSRIETLRLAI YISFM
Sbjct: 94 RKRVITYAQRQAANIRERKRMFNLNEAFDQLRRKVPTFAYEKRLSRIETLRLAIVYISFM 153
Query: 95 SELLHGT 101
+ELL
Sbjct: 154 TELLESC 160
>sp|Q923Z4|FER3L_MOUSE Fer3-like protein OS=Mus musculus GN=Ferd3l PE=1 SV=1
Length = 168
Score = 115 bits (288), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 57/73 (78%), Positives = 62/73 (84%)
Query: 35 RRRVATLAQRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFM 94
R+RV T AQR+AANIRER+RMFNLNEAFD+LRRKVPTFAYEKRLSRIETLRLAI YISFM
Sbjct: 96 RKRVITYAQRQAANIRERKRMFNLNEAFDQLRRKVPTFAYEKRLSRIETLRLAIVYISFM 155
Query: 95 SELLHGTPNGSTS 107
+ELL S
Sbjct: 156 TELLQSKEEKEAS 168
>sp|Q4ZHW1|PTF1A_XENLA Pancreas transcription factor 1 subunit alpha OS=Xenopus laevis
GN=ptf1a PE=2 SV=1
Length = 270
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 12/105 (11%)
Query: 18 GHGGS--STGTNGGH-TKKTRRRVATLAQ----RRAANIRERRRMFNLNEAFDKLRRKVP 70
G GG S G GG K RRR+ + A+ R+AAN+RERRRM ++N+AF+ LR +P
Sbjct: 88 GDGGCDLSPGMKGGSLVMKRRRRLRSDAEMQQLRQAANVRERRRMQSINDAFEGLRSHIP 147
Query: 71 TFAYEKRLSRIETLRLAITYISFMSELLHGT-----PNGSTSGSP 110
T YEKRLS+++TLRLAI YI+F+SE++ PN + P
Sbjct: 148 TLPYEKRLSKVDTLRLAIGYINFLSEMVQSDLPLRNPNSDSGNQP 192
>sp|Q9QX98|PTF1A_MOUSE Pancreas transcription factor 1 subunit alpha OS=Mus musculus
GN=Ptf1a PE=1 SV=1
Length = 324
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 57/88 (64%)
Query: 14 GRLSGHGGSSTGTNGGHTKKTRRRVATLAQRRAANIRERRRMFNLNEAFDKLRRKVPTFA 73
RL G G++ ++ R R+AAN+RERRRM ++N+AF+ LR +PT
Sbjct: 132 ARLGGLNGAAAAAAARRRRRVRSEAELQQLRQAANVRERRRMQSINDAFEGLRSHIPTLP 191
Query: 74 YEKRLSRIETLRLAITYISFMSELLHGT 101
YEKRLS+++TLRLAI YI+F+SEL+
Sbjct: 192 YEKRLSKVDTLRLAIGYINFLSELVQAD 219
>sp|Q64305|PTF1A_RAT Pancreas transcription factor 1 subunit alpha OS=Rattus norvegicus
GN=Ptf1a PE=1 SV=1
Length = 326
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 52/67 (77%), Gaps = 1/67 (1%)
Query: 36 RRVATLAQ-RRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFM 94
R A L Q R+AAN+RERRRM ++N+AF+ LR +PT YEKRLS+++TLRLAI YI+F+
Sbjct: 155 RSEAELQQLRQAANVRERRRMQSINDAFEGLRSHIPTLPYEKRLSKVDTLRLAIGYINFL 214
Query: 95 SELLHGT 101
SEL+
Sbjct: 215 SELVQAD 221
>sp|Q7ZSX3|PTF1A_DANRE Pancreas transcription factor 1 subunit alpha OS=Danio rerio
GN=ptf1a PE=2 SV=1
Length = 265
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 56/78 (71%), Gaps = 3/78 (3%)
Query: 27 NGGHTKKTRR---RVATLAQRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIET 83
+GG K+ RR V R+AAN+RERRRM ++N+AF+ LR +PT YEKRLS+++T
Sbjct: 97 DGGLLKRRRRMRSEVEMQQLRQAANVRERRRMQSINDAFEGLRSHIPTLPYEKRLSKVDT 156
Query: 84 LRLAITYISFMSELLHGT 101
LRLAI YI+F++EL+
Sbjct: 157 LRLAIGYINFLAELVQSD 174
>sp|Q7RTS3|PTF1A_HUMAN Pancreas transcription factor 1 subunit alpha OS=Homo sapiens
GN=PTF1A PE=1 SV=1
Length = 328
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 51/64 (79%), Gaps = 1/64 (1%)
Query: 39 ATLAQ-RRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSEL 97
A L Q R+AAN+RERRRM ++N+AF+ LR +PT YEKRLS+++TLRLAI YI+F+SEL
Sbjct: 159 AELQQLRQAANVRERRRMQSINDAFEGLRSHIPTLPYEKRLSKVDTLRLAIGYINFLSEL 218
Query: 98 LHGT 101
+
Sbjct: 219 VQAD 222
>sp|Q5IS79|ATOH1_PANTR Protein atonal homolog 1 OS=Pan troglodytes GN=ATOH1 PE=2 SV=1
Length = 356
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 43 QRR-AANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELLHGT 101
QRR AAN RERRRM LN AFD+LR +P+F +K+LS+ ETL++A YI+ +SELL T
Sbjct: 161 QRRLAANARERRRMHGLNHAFDQLRNVIPSFNNDKKLSKYETLQMAQIYINALSELLQ-T 219
Query: 102 PNGSTSGSP 110
P+G P
Sbjct: 220 PSGGEQPPP 228
>sp|Q92858|ATOH1_HUMAN Protein atonal homolog 1 OS=Homo sapiens GN=ATOH1 PE=2 SV=1
Length = 354
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 43 QRR-AANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELLHGT 101
QRR AAN RERRRM LN AFD+LR +P+F +K+LS+ ETL++A YI+ +SELL T
Sbjct: 159 QRRLAANARERRRMHGLNHAFDQLRNVIPSFNNDKKLSKYETLQMAQIYINALSELLQ-T 217
Query: 102 PNGSTSGSP 110
P+G P
Sbjct: 218 PSGGEQPPP 226
>sp|Q20561|HLH13_CAEEL Helix-loop-helix protein 13 OS=Caenorhabditis elegans GN=hlh-13
PE=2 SV=1
Length = 147
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 48/63 (76%), Gaps = 1/63 (1%)
Query: 43 QRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELLHGTP 102
+R+ A+IRER+RM ++N AF +LR +PTF YEKRLS+I+TL LAI YI+ + ++L TP
Sbjct: 42 ERQTASIRERKRMCSINVAFIELRNYIPTFPYEKRLSKIDTLNLAIAYINMLDDVLR-TP 100
Query: 103 NGS 105
S
Sbjct: 101 EDS 103
>sp|P48985|ATOH1_MOUSE Protein atonal homolog 1 OS=Mus musculus GN=Atoh1 PE=2 SV=1
Length = 351
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/62 (59%), Positives = 47/62 (75%), Gaps = 2/62 (3%)
Query: 43 QRR-AANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELLHGT 101
QRR AAN RERRRM LN AFD+LR +P+F +K+LS+ ETL++A YI+ +SELL T
Sbjct: 156 QRRLAANARERRRMHGLNHAFDQLRNVIPSFNNDKKLSKYETLQMAQIYINALSELLQ-T 214
Query: 102 PN 103
PN
Sbjct: 215 PN 216
>sp|P48987|ATO_DROME Protein atonal OS=Drosophila melanogaster GN=ato PE=2 SV=2
Length = 312
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 65/102 (63%), Gaps = 14/102 (13%)
Query: 11 LFNG--RLSGHGGS---STGTN-----GGHTKKTR-RRVATLAQRR---AANIRERRRMF 56
LF+G G+ GS + G N GG KK R +++ + +R+ AAN RERRRM
Sbjct: 210 LFSGGEDFDGNDGSFDLADGENQDAAAGGSGKKRRGKQITPVVKRKRRLAANARERRRMQ 269
Query: 57 NLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELL 98
NLN+AFD+LR+ +P +++LS+ ETL++A TYIS + +LL
Sbjct: 270 NLNQAFDRLRQYLPCLGNDRQLSKHETLQMAQTYISALGDLL 311
>sp|O57598|ATOH7_CHICK Protein atonal homolog 7 OS=Gallus gallus GN=ATOH7 PE=1 SV=2
Length = 151
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
Query: 27 NGGHTKKTRRRVATLAQRR-AANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLR 85
+G K + R+ + A+RR AAN RERRRM LN AFD+LR+ VP + +K+LS+ ETL+
Sbjct: 23 SGCVVKCSTERMESAAKRRLAANARERRRMQGLNTAFDRLRKVVPQWGQDKKLSKYETLQ 82
Query: 86 LAITYISFMSELL 98
+A++YI ++ +L
Sbjct: 83 MALSYIMALTRIL 95
>sp|Q91616|NDF1_XENLA Neurogenic differentiation factor 1 OS=Xenopus laevis GN=neurod1
PE=1 SV=1
Length = 352
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 34 TRRRVATLAQRR-AANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYIS 92
T+ RV RR AN RER RM LN+A D LR+ VP ++ ++LS+IETLRLA YI
Sbjct: 93 TKARVERFKVRRMKANARERNRMHGLNDALDSLRKVVPCYSKTQKLSKIETLRLAKNYIW 152
Query: 93 FMSELL 98
+SE+L
Sbjct: 153 ALSEIL 158
>sp|Q9HD90|NDF4_HUMAN Neurogenic differentiation factor 4 OS=Homo sapiens GN=NEUROD4 PE=2
SV=2
Length = 331
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Query: 42 AQRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELLH-- 99
A+R AN RER RM LN+A D LRR +P ++ ++LS+IETLRLA YI +SE+L
Sbjct: 87 ARRVKANARERTRMHGLNDALDNLRRVMPCYSKTQKLSKIETLRLARNYIWALSEVLETG 146
Query: 100 GTPNG 104
TP G
Sbjct: 147 QTPEG 151
>sp|Q6NYU3|NDF6A_DANRE Neurogenic differentiation factor 6-A OS=Danio rerio GN=neurod6a
PE=2 SV=1
Length = 327
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 32 KKTRRRVATLAQRR-AANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITY 90
K T+ RV + RR AN RER RM LN A D LR+ VP ++ ++LS+IETLRLA Y
Sbjct: 77 KMTKARVDRVKVRRMEANARERNRMHGLNNALDSLRKVVPCYSKTQKLSKIETLRLAKNY 136
Query: 91 ISFMSELL 98
I +SE+L
Sbjct: 137 IWALSEIL 144
>sp|Q62414|NDF2_MOUSE Neurogenic differentiation factor 2 OS=Mus musculus GN=Neurod2 PE=1
SV=3
Length = 383
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 41/56 (73%)
Query: 43 QRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELL 98
+R+ AN RER RM +LN A D LR+ VP ++ ++LS+IETLRLA YI +SE+L
Sbjct: 123 RRQKANARERNRMHDLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL 178
>sp|P79766|NDF4_CHICK Neurogenic differentiation factor 4 OS=Gallus gallus GN=NEUROD4
PE=2 SV=1
Length = 330
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 45/67 (67%), Gaps = 2/67 (2%)
Query: 42 AQRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELLH-- 99
A+R AN RER RM LN+A D LRR +P ++ ++LS+IETLRLA YI +SE+L
Sbjct: 87 ARRVKANARERTRMHGLNDALDNLRRVMPCYSKTQKLSKIETLRLARNYIWALSEVLETG 146
Query: 100 GTPNGST 106
TP G +
Sbjct: 147 QTPEGKS 153
>sp|Q63689|NDF2_RAT Neurogenic differentiation factor 2 OS=Rattus norvegicus GN=Neurod2
PE=1 SV=2
Length = 382
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 41/56 (73%)
Query: 43 QRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELL 98
+R+ AN RER RM +LN A D LR+ VP ++ ++LS+IETLRLA YI +SE+L
Sbjct: 122 RRQKANARERNRMHDLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL 177
>sp|Q15784|NDF2_HUMAN Neurogenic differentiation factor 2 OS=Homo sapiens GN=NEUROD2 PE=2
SV=2
Length = 382
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 41/56 (73%)
Query: 43 QRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELL 98
+R+ AN RER RM +LN A D LR+ VP ++ ++LS+IETLRLA YI +SE+L
Sbjct: 122 RRQKANARERNRMHDLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL 177
>sp|O09105|NDF4_MOUSE Neurogenic differentiation factor 4 OS=Mus musculus GN=Neurod4 PE=1
SV=1
Length = 330
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 41/57 (71%)
Query: 42 AQRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELL 98
A+R AN RER RM LN+A D LRR +P ++ ++LS+IETLRLA YI +SE+L
Sbjct: 87 ARRVKANARERTRMHGLNDALDNLRRVMPCYSKTQKLSKIETLRLARNYIWALSEVL 143
>sp|Q9Y0A7|AMOS_DROME Basic helix-loop-helix transcription factor amos OS=Drosophila
melanogaster GN=amos PE=1 SV=2
Length = 198
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 45/71 (63%), Gaps = 8/71 (11%)
Query: 28 GGHTKKTRRRVATLAQRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLA 87
GG K RR AAN RERRRM +LN+AFDKLR VP+ +++RLS+ ETL++A
Sbjct: 132 GGEVLKKRRL--------AANARERRRMNSLNDAFDKLRDVVPSLGHDRRLSKYETLQMA 183
Query: 88 ITYISFMSELL 98
YI + LL
Sbjct: 184 QAYIGDLVTLL 194
>sp|Q7RTU5|ASCL5_HUMAN Achaete-scute homolog 5 OS=Homo sapiens GN=ASCL5 PE=3 SV=2
Length = 278
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Query: 43 QRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELLHGTP 102
Q+R N RER+R+ +NE + +LR +P EKRLS++ETLR AI YI ++ ELL P
Sbjct: 158 QKR--NERERQRVKCVNEGYARLRGHLPGALAEKRLSKVETLRAAIRYIKYLQELLSSAP 215
Query: 103 NGST 106
+GST
Sbjct: 216 DGST 219
>sp|O13126|ATO7B_XENLA Protein atonal homolog 7-B OS=Xenopus laevis GN=atoh7-b PE=1 SV=1
Length = 138
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 41/55 (74%)
Query: 44 RRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELL 98
R AAN RERRRM LN AFD LR+ VP + +K+LS+ ETL++A++YI +S +L
Sbjct: 35 RLAANARERRRMQGLNTAFDSLRKVVPQWGEDKKLSKYETLQMALSYIMALSRIL 89
>sp|Q08DI0|NDF6_BOVIN Neurogenic differentiation factor 6 OS=Bos taurus GN=NEUROD6 PE=2
SV=1
Length = 337
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 40/55 (72%)
Query: 44 RRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELL 98
R+ AN RER RM LN+A D LR+ VP ++ ++LS+IETLRLA YI +SE+L
Sbjct: 96 RQEANARERNRMHGLNDALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL 150
>sp|P48986|NDF6_MOUSE Neurogenic differentiation factor 6 OS=Mus musculus GN=Neurod6 PE=2
SV=1
Length = 337
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 40/55 (72%)
Query: 44 RRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELL 98
R+ AN RER RM LN+A D LR+ VP ++ ++LS+IETLRLA YI +SE+L
Sbjct: 96 RQEANARERNRMHGLNDALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL 150
>sp|Q4R5G6|NDF6_MACFA Neurogenic differentiation factor 6 OS=Macaca fascicularis
GN=NEUROD6 PE=2 SV=1
Length = 337
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 40/55 (72%)
Query: 44 RRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELL 98
R+ AN RER RM LN+A D LR+ VP ++ ++LS+IETLRLA YI +SE+L
Sbjct: 96 RQEANARERNRMHGLNDALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL 150
>sp|Q96NK8|NDF6_HUMAN Neurogenic differentiation factor 6 OS=Homo sapiens GN=NEUROD6 PE=2
SV=1
Length = 337
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 40/55 (72%)
Query: 44 RRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELL 98
R+ AN RER RM LN+A D LR+ VP ++ ++LS+IETLRLA YI +SE+L
Sbjct: 96 RQEANARERNRMHGLNDALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL 150
>sp|Q13562|NDF1_HUMAN Neurogenic differentiation factor 1 OS=Homo sapiens GN=NEUROD1 PE=1
SV=3
Length = 356
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 34 TRRRVATLAQRR-AANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYIS 92
T+ R+ RR AN RER RM LN A D LR+ VP ++ ++LS+IETLRLA YI
Sbjct: 92 TKARLERFKLRRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIW 151
Query: 93 FMSELL 98
+SE+L
Sbjct: 152 ALSEIL 157
>sp|Q64289|NDF1_RAT Neurogenic differentiation factor 1 OS=Rattus norvegicus GN=Neurod1
PE=1 SV=1
Length = 357
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 34 TRRRVATLAQRR-AANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYIS 92
T+ R+ RR AN RER RM LN A D LR+ VP ++ ++LS+IETLRLA YI
Sbjct: 92 TKARLERFKLRRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIW 151
Query: 93 FMSELL 98
+SE+L
Sbjct: 152 ALSEIL 157
>sp|Q60430|NDF1_MESAU Neurogenic differentiation factor 1 OS=Mesocricetus auratus
GN=NEUROD1 PE=1 SV=2
Length = 355
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 34 TRRRVATLAQRR-AANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYIS 92
T+ R+ RR AN RER RM LN A D LR+ VP ++ ++LS+IETLRLA YI
Sbjct: 91 TKARLERFKLRRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIW 150
Query: 93 FMSELL 98
+SE+L
Sbjct: 151 ALSEIL 156
>sp|P79765|NDF1_CHICK Neurogenic differentiation factor 1 OS=Gallus gallus GN=NEUROD1
PE=2 SV=1
Length = 357
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 34 TRRRVATLAQRR-AANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYIS 92
T+ R+ RR AN RER RM LN A D LR+ VP ++ ++LS+IETLRLA YI
Sbjct: 95 TKARLERFKLRRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIW 154
Query: 93 FMSELL 98
+SE+L
Sbjct: 155 ALSEIL 160
>sp|Q60867|NDF1_MOUSE Neurogenic differentiation factor 1 OS=Mus musculus GN=Neurod1 PE=1
SV=2
Length = 357
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 34 TRRRVATLAQRR-AANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYIS 92
T+ R+ RR AN RER RM LN A D LR+ VP ++ ++LS+IETLRLA YI
Sbjct: 92 TKARLERFKLRRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIW 151
Query: 93 FMSELL 98
+SE+L
Sbjct: 152 ALSEIL 157
>sp|O13125|ATO7A_XENLA Protein atonal homolog 7-A OS=Xenopus laevis GN=atoh7-a PE=1 SV=1
Length = 138
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 41/55 (74%)
Query: 44 RRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELL 98
R AAN RERRRM LN AFD LR+ VP + +K+LS+ ETL++A++YI +S +L
Sbjct: 35 RLAANARERRRMQGLNTAFDSLRKVVPQWGEDKQLSKYETLQMALSYIMALSRIL 89
>sp|O42202|NDF1_DANRE Neurogenic differentiation factor 1 OS=Danio rerio GN=neurod1 PE=1
SV=1
Length = 350
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 34 TRRRVATLAQRRA-ANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYIS 92
T+ R+ RR AN RER RM LN+A + LR+ VP ++ ++LS+IETLRLA YI
Sbjct: 87 TKARMQRFKMRRMKANARERNRMHGLNDALESLRKVVPCYSKTQKLSKIETLRLAKNYIW 146
Query: 93 FMSELL 98
+SE+L
Sbjct: 147 ALSEIL 152
>sp|Q9W6C8|NDF2_DANRE Neurogenic differentiation factor 2 OS=Danio rerio GN=neurod2 PE=2
SV=1
Length = 363
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 39/55 (70%)
Query: 44 RRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELL 98
R+ AN RER RM +LN A D L + VP ++ ++LS+IETLRLA YI +SE+L
Sbjct: 109 RQKANARERTRMHDLNSALDNLLKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL 163
>sp|Q8AW52|ATOH7_DANRE Protein atonal homolog 7 OS=Danio rerio GN=atoh7 PE=1 SV=1
Length = 134
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 45/60 (75%)
Query: 39 ATLAQRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELL 98
+ + +R AAN RER+RM LN AFD+LR+ VP + +K+LS+ ETL++A++YI ++ +L
Sbjct: 25 SAMRRRMAANARERKRMQGLNTAFDRLRKVVPQWGQDKKLSKYETLQMALSYIMALNRIL 84
>sp|P13903|TWIST_XENLA Twist-related protein OS=Xenopus laevis GN=twist1 PE=2 SV=1
Length = 166
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 42 AQRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELLHGT 101
+QR AN+RER+R +LNEAF LR+ +PT +K LS+I+TL+LA YI F+ ++L
Sbjct: 72 SQRVMANVRERQRTQSLNEAFSSLRKIIPTLPSDK-LSKIQTLKLASRYIDFLCQVLQSD 130
Query: 102 PNGSTSGSPIY 112
S S Y
Sbjct: 131 ELDSKMASCSY 141
>sp|P17542|TAL1_HUMAN T-cell acute lymphocytic leukemia protein 1 OS=Homo sapiens GN=TAL1
PE=1 SV=2
Length = 331
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 52/91 (57%), Gaps = 13/91 (14%)
Query: 26 TNGGHTKKTRRRVATLAQRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLR 85
T+G HTK RR N RER R N+N AF +LR+ +PT +K+LS+ E LR
Sbjct: 179 TDGPHTKVVRRIFT--------NSRERWRQQNVNGAFAELRKLIPTHPPDKKLSKNEILR 230
Query: 86 LAITYISFMSELLH-----GTPNGSTSGSPI 111
LA+ YI+F+++LL+ GT T P+
Sbjct: 231 LAMKYINFLAKLLNDQEEEGTQRAKTGKDPV 261
>sp|Q60539|TCF15_MESAU Transcription factor 15 OS=Mesocricetus auratus GN=TCF15 PE=2 SV=1
Length = 195
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 38 VATLAQRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSEL 97
V + QR+AAN RER R ++N AF LR +PT +++LS+IETLRLA +YI+ ++ +
Sbjct: 66 VVVVRQRQAANARERDRTQSVNTAFTALRTLIPTEPVDRKLSKIETLRLASSYIAHLANV 125
Query: 98 LHGTPNGSTSGSPIYQMS 115
L + + G P ++ +
Sbjct: 126 LM-LGDAADDGQPCFRAA 142
>sp|P79782|TCF15_CHICK Transcription factor 15 OS=Gallus gallus GN=TCF15 PE=2 SV=2
Length = 183
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 41 LAQRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELL-- 98
+ QR+AAN RER R ++N AF LR +PT +++LS+IETLRLA +YI+ ++ +L
Sbjct: 60 VKQRQAANARERDRTQSVNTAFTALRTLIPTEPVDRKLSKIETLRLASSYIAHLANVLLL 119
Query: 99 -HGTPNGSTSGSPIY 112
G +G S IY
Sbjct: 120 GEGCEDGQPCFSAIY 134
>sp|Q6VNZ9|MYF6_DANRE Myogenic factor 6 OS=Danio rerio GN=myf6 PE=2 SV=1
Length = 239
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Query: 31 TKKTRRRVATLAQRRAANIRERRRMFNLNEAFDKLRRK-VPTFAYEKRLSRIETLRLAIT 89
K +R+ A +R+AA +RERRR+ +NEAFD L++K VP +RL ++E LR AI
Sbjct: 81 CKICKRKSAPTDRRKAATLRERRRLKKINEAFDALKKKTVPN--PNQRLPKVEILRSAIN 138
Query: 90 YISFMSELLH 99
YI + +LLH
Sbjct: 139 YIEKLQDLLH 148
>sp|P70660|NGN1_MOUSE Neurogenin-1 OS=Mus musculus GN=Neurog1 PE=1 SV=1
Length = 244
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 42 AQRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELL--- 98
++R AN RER RM NLN A D LR +P+F + +L++IETLR A YI ++E L
Sbjct: 93 SRRVKANDRERNRMHNLNAALDALRSVLPSFPDDTKLTKIETLRFAYNYIWALAETLRLA 152
Query: 99 -HGTPNGS 105
G P GS
Sbjct: 153 DQGLPGGS 160
>sp|Q9H2A3|NGN2_HUMAN Neurogenin-2 OS=Homo sapiens GN=NEUROG2 PE=1 SV=2
Length = 272
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 26 TNGGHTKKTRRRVATLAQRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLR 85
+ G T +T +R+ +R AN RER RM NLN A D LR +PTF + +L++IETLR
Sbjct: 97 SRGAKTAETVQRIKK-TRRLKANNRERNRMHNLNAALDALREVLPTFPEDAKLTKIETLR 155
Query: 86 LAITYISFMSELL 98
A YI ++E L
Sbjct: 156 FAHNYIWALTETL 168
>sp|P24899|TAL1_CHICK T-cell acute lymphocytic leukemia protein 1 homolog OS=Gallus
gallus GN=TAL1 PE=2 SV=1
Length = 311
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 47/74 (63%), Gaps = 8/74 (10%)
Query: 26 TNGGHTKKTRRRVATLAQRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLR 85
T+G HTK RR N RER R N+N AF +LR+ +PT +K+LS+ E LR
Sbjct: 171 TDGPHTKVVRRIFT--------NSRERWRQQNVNGAFAELRKLIPTHPPDKKLSKNEILR 222
Query: 86 LAITYISFMSELLH 99
LA+ YI+F+++LL+
Sbjct: 223 LAMKYINFLAKLLN 236
>sp|P70447|NGN2_MOUSE Neurogenin-2 OS=Mus musculus GN=Neurog2 PE=1 SV=1
Length = 263
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 26 TNGGHTKKTRRRVATLAQRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLR 85
+ G T +T +R+ +R AN RER RM NLN A D LR +PTF + +L++IETLR
Sbjct: 97 SRGAKTAETVQRIKK-TRRLKANNRERNRMHNLNAALDALREVLPTFPEDAKLTKIETLR 155
Query: 86 LAITYISFMSELL 98
A YI ++E L
Sbjct: 156 FAHNYIWALTETL 168
>sp|Q60756|TCF15_MOUSE Transcription factor 15 OS=Mus musculus GN=Tcf15 PE=1 SV=2
Length = 195
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 38 VATLAQRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSEL 97
V + QR+AAN RER R ++N AF LR +PT +++LS+IETLRLA +YI+ ++ +
Sbjct: 66 VVVVRQRQAANARERDRTQSVNTAFTALRTLIPTEPVDRKLSKIETLRLASSYIAHLANV 125
Query: 98 LHGTPNGSTSGSPIYQMS 115
L + + G P ++ +
Sbjct: 126 LL-LGDAADDGQPCFRAA 142
>sp|O42606|NGN1_DANRE Neurogenin-1 OS=Danio rerio GN=neurog1 PE=2 SV=1
Length = 208
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 46/88 (52%), Gaps = 10/88 (11%)
Query: 21 GSSTGTNGGHTKKTRRR----------VATLAQRRAANIRERRRMFNLNEAFDKLRRKVP 70
G + G +K RRR V +R AN RER RM NLN+A D LR +P
Sbjct: 39 GKPPASPAGLQQKKRRRGRARNETTVHVVKKNRRLKANDRERNRMHNLNDALDALRSVLP 98
Query: 71 TFAYEKRLSRIETLRLAITYISFMSELL 98
F + +L++IETLR A YI +SE +
Sbjct: 99 AFPDDTKLTKIETLRFAHNYIWALSETI 126
>sp|Q9W6C7|NDF6B_DANRE Neurogenic differentiation factor 6-B OS=Danio rerio GN=neurod6b
PE=1 SV=3
Length = 317
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 39/55 (70%)
Query: 44 RRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELL 98
R+ AN RER RM LN+A + LR+ VP ++ ++LS+IETLRLA YI +SE L
Sbjct: 80 RQEANARERSRMHGLNDALESLRKVVPCYSKTQKLSKIETLRLAKNYIWALSETL 134
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,185,255
Number of Sequences: 539616
Number of extensions: 1674610
Number of successful extensions: 5490
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 5119
Number of HSP's gapped (non-prelim): 375
length of query: 133
length of database: 191,569,459
effective HSP length: 99
effective length of query: 34
effective length of database: 138,147,475
effective search space: 4697014150
effective search space used: 4697014150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)