Query psy8988
Match_columns 133
No_of_seqs 114 out of 792
Neff 5.5
Searched_HMMs 46136
Date Sat Aug 17 00:49:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8988.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8988hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3960|consensus 99.8 2.9E-19 6.2E-24 145.0 9.7 75 31-106 106-180 (284)
2 KOG4029|consensus 99.8 5.4E-19 1.2E-23 140.5 7.5 67 40-106 106-173 (228)
3 KOG3898|consensus 99.6 3.7E-16 8.1E-21 127.0 5.1 63 42-104 71-133 (254)
4 PF00010 HLH: Helix-loop-helix 99.6 2.2E-15 4.8E-20 95.3 7.3 53 43-95 1-55 (55)
5 cd00083 HLH Helix-loop-helix d 99.5 4E-14 8.7E-19 89.8 8.3 58 42-99 3-60 (60)
6 KOG4395|consensus 99.5 5.9E-14 1.3E-18 114.3 7.8 65 40-104 171-235 (285)
7 smart00353 HLH helix loop heli 99.5 3E-13 6.6E-18 84.3 7.3 52 48-99 1-52 (53)
8 KOG4447|consensus 99.4 3.8E-13 8.2E-18 102.7 5.7 59 42-101 77-135 (173)
9 KOG3910|consensus 99.1 5.7E-11 1.2E-15 104.4 4.9 59 42-100 525-584 (632)
10 KOG0561|consensus 99.1 4.1E-10 8.8E-15 94.2 7.6 54 42-96 59-112 (373)
11 KOG1319|consensus 98.6 2.1E-07 4.6E-12 73.7 7.7 58 42-99 61-122 (229)
12 KOG1318|consensus 98.4 1.2E-06 2.6E-11 75.9 8.5 58 42-99 232-290 (411)
13 KOG2483|consensus 98.3 2.3E-06 5E-11 69.3 6.8 59 41-99 57-115 (232)
14 KOG4304|consensus 97.7 3.9E-05 8.5E-10 62.7 4.1 57 43-99 32-93 (250)
15 KOG3561|consensus 97.4 0.00043 9.2E-09 64.5 6.9 54 44-97 21-75 (803)
16 KOG2588|consensus 97.0 0.00079 1.7E-08 63.5 4.0 61 42-104 275-335 (953)
17 KOG4447|consensus 96.9 0.00065 1.4E-08 52.4 2.3 58 40-98 18-76 (173)
18 PLN03217 transcription factor 95.0 0.056 1.2E-06 38.1 4.7 45 55-99 19-66 (93)
19 KOG3560|consensus 93.5 0.12 2.5E-06 47.2 4.6 64 56-123 38-105 (712)
20 KOG3558|consensus 85.9 2.7 5.8E-05 39.4 6.7 46 51-96 54-100 (768)
21 KOG3559|consensus 79.3 3.7 8E-05 36.7 4.8 51 52-103 10-62 (598)
22 PF05687 DUF822: Plant protein 78.3 4 8.7E-05 31.3 4.2 32 39-70 7-38 (150)
23 PLN02705 beta-amylase 65.0 18 0.00039 33.7 5.9 31 40-70 81-111 (681)
24 PF04839 PSRP-3_Ycf65: Plastid 43.0 13 0.00029 23.4 1.0 38 59-96 10-47 (49)
25 PRK02724 hypothetical protein; 37.3 41 0.00089 24.4 2.9 38 59-96 44-81 (104)
26 CHL00163 ycf65 putative riboso 33.5 51 0.0011 23.7 2.9 38 59-96 39-76 (99)
27 KOG4395|consensus 30.6 14 0.0003 31.0 -0.5 56 33-99 72-133 (285)
28 KOG3582|consensus 30.5 17 0.00037 34.4 0.1 62 43-104 651-714 (856)
29 PF15605 Toxin_52: Putative to 29.9 1.8E+02 0.0038 21.1 5.1 46 54-99 48-102 (103)
30 PLN02905 beta-amylase 28.7 76 0.0017 29.9 3.9 29 43-71 86-114 (702)
31 PF15459 RRP14: 60S ribosome b 27.8 65 0.0014 21.1 2.4 19 53-71 2-20 (64)
32 cd06257 DnaJ DnaJ domain or J- 27.2 52 0.0011 19.3 1.8 19 49-67 37-55 (55)
33 PF13815 Dzip-like_N: Iguana/D 26.4 75 0.0016 22.6 2.8 21 80-100 59-80 (118)
34 smart00271 DnaJ DnaJ molecular 26.1 54 0.0012 19.6 1.8 17 51-67 41-57 (60)
35 KOG1748|consensus 25.3 27 0.00059 26.2 0.3 23 74-96 106-128 (131)
36 KOG3429|consensus 22.2 58 0.0013 25.5 1.6 35 51-85 105-146 (172)
37 KOG1164|consensus 21.6 1.8E+02 0.004 23.5 4.6 40 61-104 106-145 (322)
38 KOG1189|consensus 21.0 92 0.002 30.1 2.9 29 44-72 708-736 (960)
39 PF01267 F-actin_cap_A: F-acti 20.5 58 0.0013 26.8 1.4 17 56-72 237-254 (271)
No 1
>KOG3960|consensus
Probab=99.80 E-value=2.9e-19 Score=145.02 Aligned_cols=75 Identities=36% Similarity=0.632 Sum_probs=66.5
Q ss_pred CcccccchhhHHHHHHhHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q psy8988 31 TKKTRRRVATLAQRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELLHGTPNGST 106 (133)
Q Consensus 31 ~k~~rrr~~~~~rR~~an~RER~R~~~in~aF~~LR~~lP~~~~~~klSKi~tL~~Ai~YI~~L~~~L~~~~~~~~ 106 (133)
-|..+|+..+++||++|.+|||+|.++||+|||.|+++.-. +++++|.||||||.||+||..||++|++.+....
T Consensus 106 ckackrks~svDRRKAATMRERRRLkKVNEAFE~LKRrT~~-NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~ 180 (284)
T KOG3960|consen 106 CKACKRKSTSVDRRKAATMRERRRLKKVNEAFETLKRRTSS-NPNQRLPKVEILRSAIRYIERLQALLQEQDQAEK 180 (284)
T ss_pred hhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CccccccHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 46677888899999999999999999999999999988743 5789999999999999999999999997655433
No 2
>KOG4029|consensus
Probab=99.77 E-value=5.4e-19 Score=140.51 Aligned_cols=67 Identities=45% Similarity=0.634 Sum_probs=62.2
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHhhCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q psy8988 40 TLAQRRAANIRERRRMFNLNEAFDKLRRKVPTFAY-EKRLSRIETLRLAITYISFMSELLHGTPNGST 106 (133)
Q Consensus 40 ~~~rR~~an~RER~R~~~in~aF~~LR~~lP~~~~-~~klSKi~tL~~Ai~YI~~L~~~L~~~~~~~~ 106 (133)
...+|.++|+|||+||+.||.+|..||.+||..+. ++|||||+||+.||.||.+|+++|+.+.....
T Consensus 106 ~~~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~~ 173 (228)
T KOG4029|consen 106 TSAQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPLN 173 (228)
T ss_pred hhhhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCCC
Confidence 44688999999999999999999999999999988 99999999999999999999999998876653
No 3
>KOG3898|consensus
Probab=99.62 E-value=3.7e-16 Score=127.02 Aligned_cols=63 Identities=46% Similarity=0.600 Sum_probs=58.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy8988 42 AQRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELLHGTPNG 104 (133)
Q Consensus 42 ~rR~~an~RER~R~~~in~aF~~LR~~lP~~~~~~klSKi~tL~~Ai~YI~~L~~~L~~~~~~ 104 (133)
.+|.++|+|||+||++||+||+.||.+||.+..+.|+|||+||++|-+||..|++++......
T Consensus 71 ~rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~~ls~~~~ 133 (254)
T KOG3898|consen 71 LRRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEVLLSGIAP 133 (254)
T ss_pred hhcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhccccccCCCc
Confidence 588999999999999999999999999998889999999999999999999999988754444
No 4
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.61 E-value=2.2e-15 Score=95.35 Aligned_cols=53 Identities=38% Similarity=0.616 Sum_probs=49.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhhCCCC--CCCCCCCHHHHHHHHHHHHHHHH
Q psy8988 43 QRRAANIRERRRMFNLNEAFDKLRRKVPTF--AYEKRLSRIETLRLAITYISFMS 95 (133)
Q Consensus 43 rR~~an~RER~R~~~in~aF~~LR~~lP~~--~~~~klSKi~tL~~Ai~YI~~L~ 95 (133)
+|..||.+||.|+..||++|+.|+..||.. ....|++|++||..||+||..||
T Consensus 1 rR~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 1 RRQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 588999999999999999999999999995 26888999999999999999996
No 5
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.54 E-value=4e-14 Score=89.81 Aligned_cols=58 Identities=48% Similarity=0.743 Sum_probs=53.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc
Q psy8988 42 AQRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELLH 99 (133)
Q Consensus 42 ~rR~~an~RER~R~~~in~aF~~LR~~lP~~~~~~klSKi~tL~~Ai~YI~~L~~~L~ 99 (133)
.+|..+|..||.|+..||.+|+.|+..||....+.+++|+.||..|++||..|+..++
T Consensus 3 ~~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~ 60 (60)
T cd00083 3 SRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60 (60)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 4678899999999999999999999999997678999999999999999999998653
No 6
>KOG4395|consensus
Probab=99.50 E-value=5.9e-14 Score=114.25 Aligned_cols=65 Identities=48% Similarity=0.585 Sum_probs=59.2
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy8988 40 TLAQRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELLHGTPNG 104 (133)
Q Consensus 40 ~~~rR~~an~RER~R~~~in~aF~~LR~~lP~~~~~~klSKi~tL~~Ai~YI~~L~~~L~~~~~~ 104 (133)
...+|.++|+|||+||..||.||+.||..+|....+++|||.+||++|-.||..|..+|+.....
T Consensus 171 ~~~rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~~~~~~ 235 (285)
T KOG4395|consen 171 NSHRRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLDLPMSG 235 (285)
T ss_pred HHhhhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhcCcccc
Confidence 34578899999999999999999999999999999999999999999999999999999754433
No 7
>smart00353 HLH helix loop helix domain.
Probab=99.46 E-value=3e-13 Score=84.32 Aligned_cols=52 Identities=54% Similarity=0.776 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc
Q psy8988 48 NIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELLH 99 (133)
Q Consensus 48 n~RER~R~~~in~aF~~LR~~lP~~~~~~klSKi~tL~~Ai~YI~~L~~~L~ 99 (133)
|..||.|+..||++|+.|+..||....+.+++|+.||..|++||..|+..++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999986668999999999999999999998765
No 8
>KOG4447|consensus
Probab=99.40 E-value=3.8e-13 Score=102.73 Aligned_cols=59 Identities=47% Similarity=0.764 Sum_probs=55.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCC
Q psy8988 42 AQRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELLHGT 101 (133)
Q Consensus 42 ~rR~~an~RER~R~~~in~aF~~LR~~lP~~~~~~klSKi~tL~~Ai~YI~~L~~~L~~~ 101 (133)
.+|.-||.|||+|-+.||+||..||..+|+.|. .|+|||.||++|..||.+|..+|...
T Consensus 77 ~qrv~anvrerqRtqsLn~AF~~lr~iiptlPs-dklSkiqtLklA~ryidfl~~vl~s~ 135 (173)
T KOG4447|consen 77 KQRVMANVRERQRTQSLNEAFAALRKIIPTLPS-DKLSKIQTLKLAARYIDFLYQVLQSD 135 (173)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCc-cccccccchhhcccCCchhhhccccc
Confidence 489999999999999999999999999999764 67999999999999999999999976
No 9
>KOG3910|consensus
Probab=99.12 E-value=5.7e-11 Score=104.36 Aligned_cols=59 Identities=31% Similarity=0.414 Sum_probs=52.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhhC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHhcC
Q psy8988 42 AQRRAANIRERRRMFNLNEAFDKLRRKV-PTFAYEKRLSRIETLRLAITYISFMSELLHG 100 (133)
Q Consensus 42 ~rR~~an~RER~R~~~in~aF~~LR~~l-P~~~~~~klSKi~tL~~Ai~YI~~L~~~L~~ 100 (133)
+||++.|+|||.|+++||+||++|-+.+ -++..+|-.+|+-||.+|+..|..|++.+++
T Consensus 525 ERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRE 584 (632)
T KOG3910|consen 525 ERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRE 584 (632)
T ss_pred HHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999995544 4445799999999999999999999999985
No 10
>KOG0561|consensus
Probab=99.07 E-value=4.1e-10 Score=94.17 Aligned_cols=54 Identities=33% Similarity=0.512 Sum_probs=49.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy8988 42 AQRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSE 96 (133)
Q Consensus 42 ~rR~~an~RER~R~~~in~aF~~LR~~lP~~~~~~klSKi~tL~~Ai~YI~~L~~ 96 (133)
-||.-||-.||+||+.||.+|..||.+||. ..+.||||..||+...+||..|+.
T Consensus 59 mRReIANsNERRRMQSINAGFqsLr~LlPr-~eGEKLSKAAILQQTa~yI~~Le~ 112 (373)
T KOG0561|consen 59 MRREIANSNERRRMQSINAGFQSLRALLPR-KEGEKLSKAAILQQTADYIHQLEG 112 (373)
T ss_pred HHHHhhcchHHHHHHhhhHHHHHHHHhcCc-ccchhhHHHHHHHHHHHHHHHHHh
Confidence 367789999999999999999999999998 568999999999999999999875
No 11
>KOG1319|consensus
Probab=98.59 E-value=2.1e-07 Score=73.67 Aligned_cols=58 Identities=29% Similarity=0.457 Sum_probs=50.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhhCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHhc
Q psy8988 42 AQRRAANIRERRRMFNLNEAFDKLRRKVPTFAY----EKRLSRIETLRLAITYISFMSELLH 99 (133)
Q Consensus 42 ~rR~~an~RER~R~~~in~aF~~LR~~lP~~~~----~~klSKi~tL~~Ai~YI~~L~~~L~ 99 (133)
.||.+|..-||+|+.-||.+|+.|+.+||...+ +.|+||.-||..+|+||.+|..-..
T Consensus 61 rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~ 122 (229)
T KOG1319|consen 61 RRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKK 122 (229)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356679999999999999999999999998753 4599999999999999999976443
No 12
>KOG1318|consensus
Probab=98.41 E-value=1.2e-06 Score=75.91 Aligned_cols=58 Identities=24% Similarity=0.358 Sum_probs=52.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhhCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHhc
Q psy8988 42 AQRRAANIRERRRMFNLNEAFDKLRRKVPTFA-YEKRLSRIETLRLAITYISFMSELLH 99 (133)
Q Consensus 42 ~rR~~an~RER~R~~~in~aF~~LR~~lP~~~-~~~klSKi~tL~~Ai~YI~~L~~~L~ 99 (133)
+||-.||+-||+|+-.||+...+|...||... .+-++.|--||+.+++||..|++.++
T Consensus 232 ~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q 290 (411)
T KOG1318|consen 232 RKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQ 290 (411)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHH
Confidence 35567999999999999999999999999875 57788899999999999999998877
No 13
>KOG2483|consensus
Probab=98.28 E-value=2.3e-06 Score=69.31 Aligned_cols=59 Identities=25% Similarity=0.353 Sum_probs=51.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc
Q psy8988 41 LAQRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELLH 99 (133)
Q Consensus 41 ~~rR~~an~RER~R~~~in~aF~~LR~~lP~~~~~~klSKi~tL~~Ai~YI~~L~~~L~ 99 (133)
...|..||+-||+|+..|.++|+.|++.||..+.+++-+-+.||+.|..||..|+....
T Consensus 57 ~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~ 115 (232)
T KOG2483|consen 57 ASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSA 115 (232)
T ss_pred CcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHH
Confidence 35789999999999999999999999999997666655589999999999999876543
No 14
>KOG4304|consensus
Probab=97.71 E-value=3.9e-05 Score=62.69 Aligned_cols=57 Identities=16% Similarity=0.342 Sum_probs=48.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhhCCCCCC-----CCCCCHHHHHHHHHHHHHHHHHHhc
Q psy8988 43 QRRAANIRERRRMFNLNEAFDKLRRKVPTFAY-----EKRLSRIETLRLAITYISFMSELLH 99 (133)
Q Consensus 43 rR~~an~RER~R~~~in~aF~~LR~~lP~~~~-----~~klSKi~tL~~Ai~YI~~L~~~L~ 99 (133)
++..+=.-||+|+.-||.++++|+++||.... -.||-|.+||.++++|.+.|+..-.
T Consensus 32 rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~ 93 (250)
T KOG4304|consen 32 RKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQ 93 (250)
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccc
Confidence 44457788999999999999999999998642 2688999999999999999988433
No 15
>KOG3561|consensus
Probab=97.40 E-value=0.00043 Score=64.53 Aligned_cols=54 Identities=26% Similarity=0.430 Sum_probs=50.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHhhCCCCC-CCCCCCHHHHHHHHHHHHHHHHHH
Q psy8988 44 RRAANIRERRRMFNLNEAFDKLRRKVPTFA-YEKRLSRIETLRLAITYISFMSEL 97 (133)
Q Consensus 44 R~~an~RER~R~~~in~aF~~LR~~lP~~~-~~~klSKi~tL~~Ai~YI~~L~~~ 97 (133)
|..+|.-||+|+.++|...++|-..||... -.+|+.|..||+.||..|+.+.++
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 788999999999999999999999999854 479999999999999999998885
No 16
>KOG2588|consensus
Probab=96.95 E-value=0.00079 Score=63.46 Aligned_cols=61 Identities=30% Similarity=0.351 Sum_probs=54.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy8988 42 AQRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELLHGTPNG 104 (133)
Q Consensus 42 ~rR~~an~RER~R~~~in~aF~~LR~~lP~~~~~~klSKi~tL~~Ai~YI~~L~~~L~~~~~~ 104 (133)
.+|.+||.-|++=+-.||+-..+|++.+|. .+-|+.|-++|+.||+||.+|+...+....+
T Consensus 275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g--~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~ 335 (953)
T KOG2588|consen 275 EKRTAHNIIEKRYRSSINDKIIELKDLVPG--TEAKLNKSAVLRKAIDYIEDLQGYNQKLKLE 335 (953)
T ss_pred cccchhhHHHHHhhcchhHHHHHHHHhcCc--cHhhhhhhhhHHHHHHHHHHhhccccccchh
Confidence 579999999999999999999999999997 5678999999999999999999876644333
No 17
>KOG4447|consensus
Probab=96.87 E-value=0.00065 Score=52.39 Aligned_cols=58 Identities=24% Similarity=0.243 Sum_probs=48.2
Q ss_pred hHHHHHHhHHH-HHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Q psy8988 40 TLAQRRAANIR-ERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELL 98 (133)
Q Consensus 40 ~~~rR~~an~R-ER~R~~~in~aF~~LR~~lP~~~~~~klSKi~tL~~Ai~YI~~L~~~L 98 (133)
....+.-+|.+ ||.|.+.+|++|..|+..+|..+. .+.+++.+|+.+..||.+|.++-
T Consensus 18 ~~~~~~~~r~~~e~~R~~~ls~~s~l~g~l~pgspa-~gk~~~ktlr~~~~~~~~~dE~q 76 (173)
T KOG4447|consen 18 GVSEEECDRQRKERGRKRRLSDASTLLGKLEPGSPA-DGKRGKKTLRIGTDSIQSLDELQ 76 (173)
T ss_pred chhhhhhhhhHHHHhHHhhhhhhhhhccccCCCCCC-cccccccccccCCCchhhHHHHH
Confidence 34556666666 999999999999999999999764 55788999999999999998753
No 18
>PLN03217 transcription factor ATBS1; Provisional
Probab=95.02 E-value=0.056 Score=38.06 Aligned_cols=45 Identities=18% Similarity=0.263 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhhCCCCC---CCCCCCHHHHHHHHHHHHHHHHHHhc
Q psy8988 55 MFNLNEAFDKLRRKVPTFA---YEKRLSRIETLRLAITYISFMSELLH 99 (133)
Q Consensus 55 ~~~in~aF~~LR~~lP~~~---~~~klSKi~tL~~Ai~YI~~L~~~L~ 99 (133)
-.+||+-...|+..||... ...|.|-..+|+.+++||..|..-++
T Consensus 19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvD 66 (93)
T PLN03217 19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVD 66 (93)
T ss_pred HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999864 34567778999999999999877655
No 19
>KOG3560|consensus
Probab=93.46 E-value=0.12 Score=47.18 Aligned_cols=64 Identities=27% Similarity=0.503 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhhCCCCC-CCCCCCHHHHHHHHHHHHH---HHHHHhcCCCCCCCCCCCCCCCCCCCCCCcc
Q psy8988 56 FNLNEAFDKLRRKVPTFA-YEKRLSRIETLRLAITYIS---FMSELLHGTPNGSTSGSPIYQMSQREYIPYT 123 (133)
Q Consensus 56 ~~in~aF~~LR~~lP~~~-~~~klSKi~tL~~Ai~YI~---~L~~~L~~~~~~~~~~~p~~~~~~~~~~p~~ 123 (133)
..||.-+|.|-.+||... --.||.|+.+||+++.|+. +.+.+|..+.....+..+.+ ..++||.
T Consensus 38 dRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr~KSfFqvvl~~s~~~~~gg~~s~----~a~~~yr 105 (712)
T KOG3560|consen 38 DRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLRVKSFFQVVLHQSSRQPAGGPPSP----HASCPYR 105 (712)
T ss_pred HHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhcCccccCCCCCCc----cccchhh
Confidence 448999999999999843 3568999999999999986 67788887777777766543 3344554
No 20
>KOG3558|consensus
Probab=85.85 E-value=2.7 Score=39.39 Aligned_cols=46 Identities=28% Similarity=0.413 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCC-CCCCCCHHHHHHHHHHHHHHHHH
Q psy8988 51 ERRRMFNLNEAFDKLRRKVPTFA-YEKRLSRIETLRLAITYISFMSE 96 (133)
Q Consensus 51 ER~R~~~in~aF~~LR~~lP~~~-~~~klSKi~tL~~Ai~YI~~L~~ 96 (133)
-|-|+.+=|+-|.+|..+||-.. -..-|.|+.|+|++|.|.+.=.-
T Consensus 54 ARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRlrk~ 100 (768)
T KOG3558|consen 54 ARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRLRKF 100 (768)
T ss_pred hhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 36788899999999999999432 46679999999999999875443
No 21
>KOG3559|consensus
Probab=79.33 E-value=3.7 Score=36.70 Aligned_cols=51 Identities=22% Similarity=0.342 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHhhCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHhcCCCC
Q psy8988 52 RRRMFNLNEAFDKLRRKVPTFA--YEKRLSRIETLRLAITYISFMSELLHGTPN 103 (133)
Q Consensus 52 R~R~~~in~aF~~LR~~lP~~~--~~~klSKi~tL~~Ai~YI~~L~~~L~~~~~ 103 (133)
|.|+++=|--|.+|-+.||-.. ..+ +.|..|+|++..||.+-.-.=++-+.
T Consensus 10 ~tRRekEN~EF~eLAklLPLa~AItsQ-lDKasiiRLtTsYlKmr~vFPeGLGe 62 (598)
T KOG3559|consen 10 RTRREKENYEFYELAKLLPLASAITSQ-LDKASIIRLTTSYLKMRNVFPEGLGE 62 (598)
T ss_pred HHHHHhhcchHHHHHhhccchhhhhhc-cchhhhhhHHHHHHHHHHhcccccch
Confidence 5677888999999999999743 344 99999999999999987766444333
No 22
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=78.25 E-value=4 Score=31.28 Aligned_cols=32 Identities=31% Similarity=0.323 Sum_probs=25.6
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHhhCC
Q psy8988 39 ATLAQRRAANIRERRRMFNLNEAFDKLRRKVP 70 (133)
Q Consensus 39 ~~~~rR~~an~RER~R~~~in~aF~~LR~~lP 70 (133)
.+.+.|.....|||+|+.---.-|..||.+=-
T Consensus 7 pt~kErEnnk~RERrRRAIaakIfaGLR~~Gn 38 (150)
T PF05687_consen 7 PTWKERENNKRRERRRRAIAAKIFAGLRAHGN 38 (150)
T ss_pred ccHhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34456666777999999999999999999753
No 23
>PLN02705 beta-amylase
Probab=65.00 E-value=18 Score=33.75 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=25.4
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHhhCC
Q psy8988 40 TLAQRRAANIRERRRMFNLNEAFDKLRRKVP 70 (133)
Q Consensus 40 ~~~rR~~an~RER~R~~~in~aF~~LR~~lP 70 (133)
..+.|.....|||+|+.---.-|..||.+=-
T Consensus 81 ~~~e~e~~~~rer~rrai~~ki~aglr~~g~ 111 (681)
T PLN02705 81 REKEKERTKLRERHRRAITSRMLAGLRQYGN 111 (681)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHhccC
Confidence 3456666778999999999999999999743
No 24
>PF04839 PSRP-3_Ycf65: Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65); InterPro: IPR006924 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This small acidic protein is found in 30S ribosomal subunit of cyanobacteria and plant plastids. In plants it has been named plastid-specific ribosomal protein 3 (PSRP-3), and in cyanobacteria it is named Ycf65. Plastid-specific ribosomal proteins may mediate the effects of nuclear factors on plastid translation. The acidic PSRPs are thought to contribute to protein-protein interactions in the 30S subunit, and are not thought to bind RNA [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome, 0009536 plastid; PDB: 2KT9_A.
Probab=43.01 E-value=13 Score=23.42 Aligned_cols=38 Identities=24% Similarity=0.434 Sum_probs=25.8
Q ss_pred HHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy8988 59 NEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSE 96 (133)
Q Consensus 59 n~aF~~LR~~lP~~~~~~klSKi~tL~~Ai~YI~~L~~ 96 (133)
++|.+.|+..|-.-+=-..-.+|.+|..|.+-|++=|+
T Consensus 10 ~DAWe~lk~eLe~K~WIs~~e~i~lLN~~TeiIN~Wqe 47 (49)
T PF04839_consen 10 EDAWEQLKNELESKPWISEKERIELLNQATEIINYWQE 47 (49)
T ss_dssp S-HHHHHHHHHHHSTTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 46778888777332222335689999999999988665
No 25
>PRK02724 hypothetical protein; Provisional
Probab=37.27 E-value=41 Score=24.35 Aligned_cols=38 Identities=24% Similarity=0.433 Sum_probs=29.8
Q ss_pred HHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy8988 59 NEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSE 96 (133)
Q Consensus 59 n~aF~~LR~~lP~~~~~~klSKi~tL~~Ai~YI~~L~~ 96 (133)
++|.+.|+..|-.-+=-..-.+|.+|..|.+-|++=|+
T Consensus 44 ~DAWe~LK~~LesK~WIs~~~~i~lLN~~TeiIN~WQe 81 (104)
T PRK02724 44 NDAWEQLKTELESKHWITENERVEVLNKATEVINYWQE 81 (104)
T ss_pred ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 57889999988543322345689999999999999998
No 26
>CHL00163 ycf65 putative ribosomal protein 3; Validated
Probab=33.52 E-value=51 Score=23.66 Aligned_cols=38 Identities=21% Similarity=0.346 Sum_probs=29.6
Q ss_pred HHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy8988 59 NEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSE 96 (133)
Q Consensus 59 n~aF~~LR~~lP~~~~~~klSKi~tL~~Ai~YI~~L~~ 96 (133)
++|-+.|+..|-.-+=-..-.+|.+|..|.+-|++=|+
T Consensus 39 ~DAWe~LK~~LesK~WIs~~~~i~lLN~~TeiIN~Wqe 76 (99)
T CHL00163 39 TDAWELLKLELESKPWISEDERIEILNKTTEIINYWQE 76 (99)
T ss_pred ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 47889999888543322335689999999999999998
No 27
>KOG4395|consensus
Probab=30.61 E-value=14 Score=30.96 Aligned_cols=56 Identities=32% Similarity=0.491 Sum_probs=39.3
Q ss_pred ccccchhhHHHHHHhHHHHHHHHHHHHHHHHHHHhhCC------CCCCCCCCCHHHHHHHHHHHHHHHHHHhc
Q psy8988 33 KTRRRVATLAQRRAANIRERRRMFNLNEAFDKLRRKVP------TFAYEKRLSRIETLRLAITYISFMSELLH 99 (133)
Q Consensus 33 ~~rrr~~~~~rR~~an~RER~R~~~in~aF~~LR~~lP------~~~~~~klSKi~tL~~Ai~YI~~L~~~L~ 99 (133)
+.+-+.....+|..+|. ++++| |.||| ..+.+.++.|+.+++.+..||.+++...+
T Consensus 72 ~~~a~P~~~~l~~~~n~-----a~e~~------~h~v~A~~~e~a~p~~~~l~~~~~~~~~k~~~~~~~~~~~ 133 (285)
T KOG4395|consen 72 KTKAPPLSKYLRKTANA-----AREIN------RHCVPAIKGEDAAPTNEKLTKITTLRLAKKYITMLTDSIR 133 (285)
T ss_pred cccCCchHHhhhhhhhH-----HHHHh------hhccccccccccCchhhhhhcccccccccCCCcCCccccc
Confidence 33444445567777884 33444 78888 23467889999999999999999885444
No 28
>KOG3582|consensus
Probab=30.49 E-value=17 Score=34.41 Aligned_cols=62 Identities=16% Similarity=0.203 Sum_probs=49.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhhCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy8988 43 QRRAANIRERRRMFNLNEAFDKLRRKVPTFA--YEKRLSRIETLRLAITYISFMSELLHGTPNG 104 (133)
Q Consensus 43 rR~~an~RER~R~~~in~aF~~LR~~lP~~~--~~~klSKi~tL~~Ai~YI~~L~~~L~~~~~~ 104 (133)
++.++---|.+|.-++...|+.|-...-+.. ..-|.++...|+....||..++..+.+-..+
T Consensus 651 r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e 714 (856)
T KOG3582|consen 651 RPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEE 714 (856)
T ss_pred CcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchh
Confidence 5667888899999999999998877665433 4667888888999999999998877765444
No 29
>PF15605 Toxin_52: Putative toxin 52
Probab=29.85 E-value=1.8e+02 Score=21.07 Aligned_cols=46 Identities=17% Similarity=0.293 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhhCCCCC---CCCCCCHH------HHHHHHHHHHHHHHHHhc
Q psy8988 54 RMFNLNEAFDKLRRKVPTFA---YEKRLSRI------ETLRLAITYISFMSELLH 99 (133)
Q Consensus 54 R~~~in~aF~~LR~~lP~~~---~~~klSKi------~tL~~Ai~YI~~L~~~L~ 99 (133)
-+++|++++..|+.+.-.+. .+..+|.. .-|..|..||...++++.
T Consensus 48 HlqEm~da~~GL~n~~~~le~~L~np~l~~~~r~~lq~~l~ea~~~l~kiE~~~~ 102 (103)
T PF15605_consen 48 HLQEMQDAYRGLVNRKRTLEGSLKNPNLSGRTRELLQSKLNEANNYLDKIEDFFP 102 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57788888887776542211 22223322 346677888888887764
No 30
>PLN02905 beta-amylase
Probab=28.74 E-value=76 Score=29.87 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=24.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhhCCC
Q psy8988 43 QRRAANIRERRRMFNLNEAFDKLRRKVPT 71 (133)
Q Consensus 43 rR~~an~RER~R~~~in~aF~~LR~~lP~ 71 (133)
.|.....|||+|+.---.-|..||.+=-+
T Consensus 86 ere~~~~rer~rrai~~~i~~glr~~g~~ 114 (702)
T PLN02905 86 EKERTKLRERHRRAITARILAGLRRHGNY 114 (702)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 55567789999999999999999998543
No 31
>PF15459 RRP14: 60S ribosome biogenesis protein Rrp14
Probab=27.77 E-value=65 Score=21.09 Aligned_cols=19 Identities=26% Similarity=0.399 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHhhCCC
Q psy8988 53 RRMFNLNEAFDKLRRKVPT 71 (133)
Q Consensus 53 ~R~~~in~aF~~LR~~lP~ 71 (133)
.|++.=|.+|+.|-++||.
T Consensus 2 erl~~h~~~Fd~Ll~LIPA 20 (64)
T PF15459_consen 2 ERLRAHSSFFDGLLSLIPA 20 (64)
T ss_pred cHHHHHHHHHHHHHHhCCh
Confidence 3677889999999999995
No 32
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=27.22 E-value=52 Score=19.27 Aligned_cols=19 Identities=21% Similarity=0.399 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy8988 49 IRERRRMFNLNEAFDKLRR 67 (133)
Q Consensus 49 ~RER~R~~~in~aF~~LR~ 67 (133)
.....++..||+||+.|.+
T Consensus 37 ~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 37 PEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 3345689999999999863
No 33
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=26.35 E-value=75 Score=22.65 Aligned_cols=21 Identities=24% Similarity=0.467 Sum_probs=18.3
Q ss_pred HH-HHHHHHHHHHHHHHHHhcC
Q psy8988 80 RI-ETLRLAITYISFMSELLHG 100 (133)
Q Consensus 80 Ki-~tL~~Ai~YI~~L~~~L~~ 100 (133)
|+ .+++++|+|+.+.++.|..
T Consensus 59 klfrLaQl~ieYLl~~q~~L~~ 80 (118)
T PF13815_consen 59 KLFRLAQLSIEYLLHCQEYLSS 80 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 55 8899999999999998874
No 34
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=26.05 E-value=54 Score=19.62 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy8988 51 ERRRMFNLNEAFDKLRR 67 (133)
Q Consensus 51 ER~R~~~in~aF~~LR~ 67 (133)
-..++..||.||+.|.+
T Consensus 41 ~~~~~~~l~~Ay~~L~~ 57 (60)
T smart00271 41 AEEKFKEINEAYEVLSD 57 (60)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 34588999999999975
No 35
>KOG1748|consensus
Probab=25.31 E-value=27 Score=26.22 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHH
Q psy8988 74 YEKRLSRIETLRLAITYISFMSE 96 (133)
Q Consensus 74 ~~~klSKi~tL~~Ai~YI~~L~~ 96 (133)
++++.-|+.+.+.|++||..+.+
T Consensus 106 pd~dAdki~t~~da~~yI~~~~d 128 (131)
T KOG1748|consen 106 PDEDADKIKTVRDAADYIADKPD 128 (131)
T ss_pred CcchhhhhCCHHHHHHHHHhccc
Confidence 67889999999999999987654
No 36
>KOG3429|consensus
Probab=22.19 E-value=58 Score=25.53 Aligned_cols=35 Identities=23% Similarity=0.422 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHhhC------CC-CCCCCCCCHHHHHH
Q psy8988 51 ERRRMFNLNEAFDKLRRKV------PT-FAYEKRLSRIETLR 85 (133)
Q Consensus 51 ER~R~~~in~aF~~LR~~l------P~-~~~~~klSKi~tL~ 85 (133)
-|.|...|-+||+.||+.| |+ .+.++..-|+.++.
T Consensus 105 TRsq~~NiaDcleKlr~~I~~~~~~~~~~~teE~~kk~r~~~ 146 (172)
T KOG3429|consen 105 TRSQHKNIADCLEKLRDIIRAAEQTPPVDPTEETIKKIRIRK 146 (172)
T ss_pred hHHhhccHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 4556667779999999886 43 23444444554443
No 37
>KOG1164|consensus
Probab=21.56 E-value=1.8e+02 Score=23.49 Aligned_cols=40 Identities=28% Similarity=0.425 Sum_probs=29.4
Q ss_pred HHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy8988 61 AFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELLHGTPNG 104 (133)
Q Consensus 61 aF~~LR~~lP~~~~~~klSKi~tL~~Ai~YI~~L~~~L~~~~~~ 104 (133)
-++.|+...| ++++|+-.+|+.|++-|..|+.+=+..-.+
T Consensus 106 sL~dl~~~~~----~~~fs~~T~l~ia~q~l~~l~~lH~~G~iH 145 (322)
T KOG1164|consen 106 SLEDLRKRNP----PGRFSRKTVLRIAIQNLNALEDLHSKGFIH 145 (322)
T ss_pred cHHHHHHhCC----CCCcCHhHHHHHHHHHHHHHHHHHhcCccc
Confidence 3445666665 588999999999999999999754433333
No 38
>KOG1189|consensus
Probab=20.96 E-value=92 Score=30.13 Aligned_cols=29 Identities=31% Similarity=0.335 Sum_probs=25.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHhhCCCC
Q psy8988 44 RRAANIRERRRMFNLNEAFDKLRRKVPTF 72 (133)
Q Consensus 44 R~~an~RER~R~~~in~aF~~LR~~lP~~ 72 (133)
-..+..+||.|++.||.+|...-..||.+
T Consensus 708 el~~EQ~Er~rr~~ln~~FksF~~kv~~~ 736 (960)
T KOG1189|consen 708 ELEQEQEERDRRAKLNMAFKSFAEKVAEA 736 (960)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35688999999999999999999888764
No 39
>PF01267 F-actin_cap_A: F-actin capping protein alpha subunit; InterPro: IPR002189 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. The actin filament system, a prominent part of the cytoskeleton in eukaryotic cells, is both a static structure and a dynamic network that can undergo rearrangements: it is thought to be involved in processes such as cell movement and phagocytosis [], as well as muscle contraction. The F-actin capping protein binds in a calcium-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike gelsolin and severin this protein does not sever actin filaments. The F-actin capping protein is a heterodimer composed of two unrelated subunits: alpha and beta (see IPR001698 from INTERPRO). Neither of the subunits shows sequence similarity to other filament-capping proteins []. The alpha subunit is a protein of about 268 to 286 amino acid residues whose sequence is well conserved in eukaryotic species [].; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0008290 F-actin capping protein complex; PDB: 1MQ1_D 1MWN_X 2KBM_Y 2KZ7_A 3AAE_C 3AA6_A 3LK4_G 1IZN_A 3AA7_A 3AAA_A ....
Probab=20.52 E-value=58 Score=26.83 Aligned_cols=17 Identities=47% Similarity=0.765 Sum_probs=11.2
Q ss_pred HHHHH-HHHHHHhhCCCC
Q psy8988 56 FNLNE-AFDKLRRKVPTF 72 (133)
Q Consensus 56 ~~in~-aF~~LR~~lP~~ 72 (133)
..||+ .|..||+.||.-
T Consensus 237 ~~ls~~tFK~LRR~LPVT 254 (271)
T PF01267_consen 237 NNLSEKTFKALRRQLPVT 254 (271)
T ss_dssp HHHHHTHHHHHS-SS-TT
T ss_pred HHhhHHHHHHhhhhCCCC
Confidence 45555 789999999973
Done!