Query psy8988
Match_columns 133
No_of_seqs 114 out of 792
Neff 5.5
Searched_HMMs 29240
Date Sat Aug 17 00:49:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8988.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8988hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ql2_B Neurod1, neurogenic dif 99.9 5.5E-25 1.9E-29 143.0 8.6 58 43-100 2-59 (60)
2 1mdy_A Protein (MYOD BHLH doma 99.9 9E-25 3.1E-29 145.3 8.9 65 35-100 4-68 (68)
3 2lfh_A DNA-binding protein inh 99.8 2.1E-22 7.1E-27 133.8 1.3 50 47-96 18-67 (68)
4 4aya_A DNA-binding protein inh 99.8 5.3E-21 1.8E-25 134.9 7.3 65 43-107 25-89 (97)
5 3u5v_A Protein MAX, transcript 99.8 7E-19 2.4E-23 119.0 5.0 64 41-104 3-67 (76)
6 1nkp_A C-MYC, MYC proto-oncoge 99.7 1.7E-16 5.9E-21 109.6 7.8 60 40-99 3-62 (88)
7 1hlo_A Protein (transcription 99.7 2.1E-16 7.1E-21 106.9 8.0 58 41-99 10-67 (80)
8 1nkp_B MAX protein, MYC proto- 99.6 7.6E-16 2.6E-20 104.6 7.4 56 43-99 2-57 (83)
9 1nlw_A MAD protein, MAX dimeri 99.6 1.1E-15 3.7E-20 104.0 7.6 56 44-99 2-57 (80)
10 1am9_A Srebp-1A, protein (ster 99.5 8.3E-14 2.8E-18 94.8 7.9 57 41-99 4-60 (82)
11 1an4_A Protein (upstream stimu 99.4 1.4E-14 4.8E-19 94.2 1.2 55 43-97 5-62 (65)
12 1a0a_A BHLH, protein (phosphat 99.4 9.4E-14 3.2E-18 90.6 1.1 57 43-99 2-62 (63)
13 4h10_B Circadian locomoter out 99.4 3.1E-12 1.1E-16 85.4 8.4 57 41-99 6-62 (71)
14 4ati_A MITF, microphthalmia-as 99.3 5.2E-12 1.8E-16 91.3 7.4 57 43-99 27-84 (118)
15 4h10_A ARYL hydrocarbon recept 99.3 3.6E-12 1.2E-16 85.4 5.3 58 42-99 8-66 (73)
16 4f3l_A Mclock, circadian locom 98.7 2.1E-08 7E-13 82.1 7.4 56 42-99 11-66 (361)
17 4f3l_B BMAL1B; BHLH, PAS, circ 98.5 1.5E-07 5E-12 78.0 5.8 54 42-95 12-66 (387)
18 4ath_A MITF, microphthalmia-as 98.0 1.7E-05 5.9E-10 54.1 6.6 43 56-98 5-48 (83)
19 3muj_A Transcription factor CO 93.3 0.19 6.6E-06 36.9 5.9 39 57-95 95-134 (138)
20 3mlp_A Transcription factor CO 63.7 1.2 4E-05 37.6 -0.5 38 57-94 321-359 (402)
21 1pd7_B MAD1; PAH2, SIN3, eukar 51.1 11 0.00037 20.0 2.1 20 77-96 1-20 (26)
22 1iur_A KIAA0730 protein; DNAJ 37.4 33 0.0011 22.4 3.4 20 52-71 57-76 (88)
23 1faf_A Large T antigen; J doma 31.8 31 0.0011 21.8 2.5 17 53-69 50-66 (79)
24 2guz_A Mitochondrial import in 24.5 48 0.0016 20.4 2.3 15 54-68 53-67 (71)
25 1gk7_A Vimentin; intermediate 22.0 71 0.0024 18.1 2.5 19 49-67 2-20 (39)
26 2dn9_A DNAJ homolog subfamily 21.6 55 0.0019 20.1 2.2 15 53-67 48-62 (79)
27 2kt9_A Probable 30S ribosomal 21.1 26 0.00087 24.8 0.5 39 59-97 45-83 (116)
28 2ctr_A DNAJ homolog subfamily 20.8 57 0.0019 20.7 2.2 16 52-67 46-61 (88)
29 2dmx_A DNAJ homolog subfamily 20.6 58 0.002 20.8 2.2 16 53-68 51-66 (92)
30 2cug_A Mkiaa0962 protein; DNAJ 20.2 59 0.002 20.6 2.2 16 52-67 56-71 (88)
No 1
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.92 E-value=5.5e-25 Score=143.03 Aligned_cols=58 Identities=52% Similarity=0.766 Sum_probs=56.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcC
Q psy8988 43 QRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELLHG 100 (133)
Q Consensus 43 rR~~an~RER~R~~~in~aF~~LR~~lP~~~~~~klSKi~tL~~Ai~YI~~L~~~L~~ 100 (133)
+|.+||+|||+||++||+||+.||.+||..+.++||||++||+.||+||.+|+++|++
T Consensus 2 rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~~ 59 (60)
T 2ql2_B 2 RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRS 59 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 6889999999999999999999999999998999999999999999999999999975
No 2
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.91 E-value=9e-25 Score=145.28 Aligned_cols=65 Identities=40% Similarity=0.661 Sum_probs=59.1
Q ss_pred ccchhhHHHHHHhHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcC
Q psy8988 35 RRRVATLAQRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELLHG 100 (133)
Q Consensus 35 rrr~~~~~rR~~an~RER~R~~~in~aF~~LR~~lP~~~~~~klSKi~tL~~Ai~YI~~L~~~L~~ 100 (133)
+++..+.++|.+||+|||+||++||+||+.||++||.. +++|+||++||+.||+||.+|+++|++
T Consensus 4 kr~~~~~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~-~~~KlSKi~tLr~Ai~YI~~L~~~L~~ 68 (68)
T 1mdy_A 4 KRKTTNADRRKAATMRERRRLSKVNEAFETLKRSTSSN-PNQRLPKVEILRNAIRYIEGLQALLRD 68 (68)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSC-TTSCCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred CcCCCchhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCC-CCCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 34456778999999999999999999999999999985 489999999999999999999999974
No 3
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.84 E-value=2.1e-22 Score=133.81 Aligned_cols=50 Identities=26% Similarity=0.367 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy8988 47 ANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSE 96 (133)
Q Consensus 47 an~RER~R~~~in~aF~~LR~~lP~~~~~~klSKi~tL~~Ai~YI~~L~~ 96 (133)
+|+|||+||+.||+||+.||++||..+.++||||||||+.||+||.+||+
T Consensus 18 a~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 18 AAEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CBCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 58999999999999999999999999999999999999999999999985
No 4
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=99.83 E-value=5.3e-21 Score=134.86 Aligned_cols=65 Identities=23% Similarity=0.369 Sum_probs=54.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy8988 43 QRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELLHGTPNGSTS 107 (133)
Q Consensus 43 rR~~an~RER~R~~~in~aF~~LR~~lP~~~~~~klSKi~tL~~Ai~YI~~L~~~L~~~~~~~~~ 107 (133)
|+.....+||.||+.||+||+.||.+||..+.++||||||||++||+||.+|+++|++.+.....
T Consensus 25 R~k~~~~~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~~~~~~ 89 (97)
T 4aya_A 25 RSKTPVDDPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHLKPSFL 89 (97)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTTSTTCC
T ss_pred HHhcccccHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCCCCcch
Confidence 33344566799999999999999999999999999999999999999999999999987765544
No 5
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.75 E-value=7e-19 Score=119.01 Aligned_cols=64 Identities=23% Similarity=0.290 Sum_probs=52.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHhhCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy8988 41 LAQRRAANIRERRRMFNLNEAFDKLRRKVPT-FAYEKRLSRIETLRLAITYISFMSELLHGTPNG 104 (133)
Q Consensus 41 ~~rR~~an~RER~R~~~in~aF~~LR~~lP~-~~~~~klSKi~tL~~Ai~YI~~L~~~L~~~~~~ 104 (133)
.++|..||++||+|+..||++|+.||.+||. .+.++.+||++||+.||+||..|++.|++....
T Consensus 3 ~~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~~ 67 (76)
T 3u5v_A 3 ADKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNLN 67 (76)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred hhHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4578999999999999999999999999995 445666699999999999999999999975544
No 6
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.66 E-value=1.7e-16 Score=109.63 Aligned_cols=60 Identities=25% Similarity=0.393 Sum_probs=55.3
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc
Q psy8988 40 TLAQRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELLH 99 (133)
Q Consensus 40 ~~~rR~~an~RER~R~~~in~aF~~LR~~lP~~~~~~klSKi~tL~~Ai~YI~~L~~~L~ 99 (133)
...+|..||+.||+|+..||++|+.||.+||..+.+.|+||+.||..||+||.+|+....
T Consensus 3 d~~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~ 62 (88)
T 1nkp_A 3 MNVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQ 62 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 346899999999999999999999999999998788999999999999999999997643
No 7
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.66 E-value=2.1e-16 Score=106.94 Aligned_cols=58 Identities=31% Similarity=0.499 Sum_probs=53.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc
Q psy8988 41 LAQRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELLH 99 (133)
Q Consensus 41 ~~rR~~an~RER~R~~~in~aF~~LR~~lP~~~~~~klSKi~tL~~Ai~YI~~L~~~L~ 99 (133)
..+|..||++||+|+..||++|+.|+.+||..+ +.|+||++||+.|++||.+|+..++
T Consensus 10 ~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~-~~k~sK~~iL~~Ai~YI~~L~~~~~ 67 (80)
T 1hlo_A 10 ADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQ-GEKASRAQILDKATEYIQYMRRKNH 67 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGT-TSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCC-CCCccHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999854 5689999999999999999998765
No 8
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.63 E-value=7.6e-16 Score=104.60 Aligned_cols=56 Identities=32% Similarity=0.525 Sum_probs=51.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc
Q psy8988 43 QRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELLH 99 (133)
Q Consensus 43 rR~~an~RER~R~~~in~aF~~LR~~lP~~~~~~klSKi~tL~~Ai~YI~~L~~~L~ 99 (133)
+|..||.+||+|+..||++|+.|+.+||..+ +.|+||++||+.||+||..|+..++
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~-~~k~sK~~iL~~Ai~YI~~L~~~~~ 57 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQ-GEKASRAQILDKATEYIQYMRRKNH 57 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGT-TSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999854 6789999999999999999996554
No 9
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.62 E-value=1.1e-15 Score=104.04 Aligned_cols=56 Identities=23% Similarity=0.204 Sum_probs=52.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc
Q psy8988 44 RRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELLH 99 (133)
Q Consensus 44 R~~an~RER~R~~~in~aF~~LR~~lP~~~~~~klSKi~tL~~Ai~YI~~L~~~L~ 99 (133)
|..||+.||+|+..||++|+.||+.||..+.+.|+||+.||+.|++||..|++...
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~ 57 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDR 57 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999998889999999999999999999987543
No 10
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.49 E-value=8.3e-14 Score=94.77 Aligned_cols=57 Identities=30% Similarity=0.366 Sum_probs=52.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc
Q psy8988 41 LAQRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELLH 99 (133)
Q Consensus 41 ~~rR~~an~RER~R~~~in~aF~~LR~~lP~~~~~~klSKi~tL~~Ai~YI~~L~~~L~ 99 (133)
..+|..||..||+|+..||++|..|+..||. .+.|++|+.||..||+||.+|+..++
T Consensus 4 ~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~--~~~k~~Ka~IL~~Ai~YI~~Lq~~~~ 60 (82)
T 1am9_A 4 GEKRTAHNAIEKRYRSSINDKIIELKDLVVG--TEAKLNKSAVLRKAIDYIRFLQHSNQ 60 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--SSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHHhccC--CCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999999999999997 46899999999999999999998765
No 11
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.44 E-value=1.4e-14 Score=94.23 Aligned_cols=55 Identities=27% Similarity=0.277 Sum_probs=49.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhhCCCCCCC---CCCCHHHHHHHHHHHHHHHHHH
Q psy8988 43 QRRAANIRERRRMFNLNEAFDKLRRKVPTFAYE---KRLSRIETLRLAITYISFMSEL 97 (133)
Q Consensus 43 rR~~an~RER~R~~~in~aF~~LR~~lP~~~~~---~klSKi~tL~~Ai~YI~~L~~~ 97 (133)
+|..||..||.|+..||++|+.|+.+||..... .|++|+.||..||+||..|+..
T Consensus 5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~ 62 (65)
T 1an4_A 5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQS 62 (65)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTT
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 466799999999999999999999999986543 5899999999999999999864
No 12
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.36 E-value=9.4e-14 Score=90.56 Aligned_cols=57 Identities=21% Similarity=0.208 Sum_probs=50.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhhCCCCC----CCCCCCHHHHHHHHHHHHHHHHHHhc
Q psy8988 43 QRRAANIRERRRMFNLNEAFDKLRRKVPTFA----YEKRLSRIETLRLAITYISFMSELLH 99 (133)
Q Consensus 43 rR~~an~RER~R~~~in~aF~~LR~~lP~~~----~~~klSKi~tL~~Ai~YI~~L~~~L~ 99 (133)
+|..|+.-||.|+..||.+|+.|+.+||... .+.++||.+||..||+||..|++.+.
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 3567899999999999999999999999753 25799999999999999999987553
No 13
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.36 E-value=3.1e-12 Score=85.41 Aligned_cols=57 Identities=19% Similarity=0.317 Sum_probs=52.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc
Q psy8988 41 LAQRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELLH 99 (133)
Q Consensus 41 ~~rR~~an~RER~R~~~in~aF~~LR~~lP~~~~~~klSKi~tL~~Ai~YI~~L~~~L~ 99 (133)
..+|..+|..||+|+..||+.|..|+..||. ...|++|..||+.||+||..|+..+.
T Consensus 6 ~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~--~~~K~dK~sIL~~aI~yik~Lq~~~~ 62 (71)
T 4h10_B 6 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPG--NARKMDKSTVLQKSIDFLRKHKEITA 62 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS--CCSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhhhHHHhhHHHHHHHHHHHHHHhCCC--CCCCCcHHHHHHHHHHHHHHHHHhhh
Confidence 4578899999999999999999999999995 46799999999999999999998764
No 14
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.30 E-value=5.2e-12 Score=91.29 Aligned_cols=57 Identities=25% Similarity=0.424 Sum_probs=47.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhhCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHhc
Q psy8988 43 QRRAANIRERRRMFNLNEAFDKLRRKVPTFA-YEKRLSRIETLRLAITYISFMSELLH 99 (133)
Q Consensus 43 rR~~an~RER~R~~~in~aF~~LR~~lP~~~-~~~klSKi~tL~~Ai~YI~~L~~~L~ 99 (133)
+|..||.-||+|+..||+.|..|+..||... .+.|++|+.||..||+||.+|+..++
T Consensus 27 kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~ 84 (118)
T 4ati_A 27 KKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQ 84 (118)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 5778999999999999999999999999865 36799999999999999999987655
No 15
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.28 E-value=3.6e-12 Score=85.36 Aligned_cols=58 Identities=26% Similarity=0.383 Sum_probs=50.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhhCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHhc
Q psy8988 42 AQRRAANIRERRRMFNLNEAFDKLRRKVPTFA-YEKRLSRIETLRLAITYISFMSELLH 99 (133)
Q Consensus 42 ~rR~~an~RER~R~~~in~aF~~LR~~lP~~~-~~~klSKi~tL~~Ai~YI~~L~~~L~ 99 (133)
.+|..|+..||+|+..||.+|+.|+..||... ...|++|+.||+.||+||..|+..-.
T Consensus 8 ~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~~~~ 66 (73)
T 4h10_A 8 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGAWL 66 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSCC--
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhcCcc
Confidence 46788999999999999999999999999743 46899999999999999999876443
No 16
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.73 E-value=2.1e-08 Score=82.07 Aligned_cols=56 Identities=20% Similarity=0.310 Sum_probs=44.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc
Q psy8988 42 AQRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELLH 99 (133)
Q Consensus 42 ~rR~~an~RER~R~~~in~aF~~LR~~lP~~~~~~klSKi~tL~~Ai~YI~~L~~~L~ 99 (133)
.+|..||..||+|+..||..|..|+..||. ...||.|+.||++||.||..|+.+-.
T Consensus 11 ~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~--~~~~~dk~~il~~~~~~~~~~~~~~~ 66 (361)
T 4f3l_A 11 AKRVSRNKSEKKRRDQFNVLIKELGSMLPG--NARKMDKSTVLQKSIDFLRKHKETTA 66 (361)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCCS--SSCCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhCCC--CCCCcCHHHHHHHHHHHHHHHHhhcc
Confidence 357789999999999999999999999993 56899999999999999999998654
No 17
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.48 E-value=1.5e-07 Score=78.00 Aligned_cols=54 Identities=28% Similarity=0.440 Sum_probs=49.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhhCCCCC-CCCCCCHHHHHHHHHHHHHHHH
Q psy8988 42 AQRRAANIRERRRMFNLNEAFDKLRRKVPTFA-YEKRLSRIETLRLAITYISFMS 95 (133)
Q Consensus 42 ~rR~~an~RER~R~~~in~aF~~LR~~lP~~~-~~~klSKi~tL~~Ai~YI~~L~ 95 (133)
.+|..||.-||+|+..||..|.+|+.+||... ...|+.|..||++||+||..|+
T Consensus 12 ~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~ 66 (387)
T 4f3l_B 12 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLR 66 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHH
T ss_pred hhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhh
Confidence 35778999999999999999999999999643 4689999999999999999987
No 18
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.00 E-value=1.7e-05 Score=54.12 Aligned_cols=43 Identities=21% Similarity=0.375 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhhCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHh
Q psy8988 56 FNLNEAFDKLRRKVPTFA-YEKRLSRIETLRLAITYISFMSELL 98 (133)
Q Consensus 56 ~~in~aF~~LR~~lP~~~-~~~klSKi~tL~~Ai~YI~~L~~~L 98 (133)
-.||+.|.+|...||... .+-|.+|-.||+.|++||.+|++-.
T Consensus 5 ~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~ 48 (83)
T 4ath_A 5 FNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQ 48 (83)
T ss_dssp HHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTH
T ss_pred hhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHH
Confidence 469999999999999753 6789999999999999999997743
No 19
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=93.25 E-value=0.19 Score=36.95 Aligned_cols=39 Identities=18% Similarity=0.368 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhhCCCCC-CCCCCCHHHHHHHHHHHHHHHH
Q psy8988 57 NLNEAFDKLRRKVPTFA-YEKRLSRIETLRLAITYISFMS 95 (133)
Q Consensus 57 ~in~aF~~LR~~lP~~~-~~~klSKi~tL~~Ai~YI~~L~ 95 (133)
.|+-+|+.|.+.+|-++ ...+|.|-.||+.|.++...|-
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~~ 134 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEALY 134 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHHh
Confidence 58899999999999987 4688999999999999888763
No 20
>3mlp_A Transcription factor COE1; transcription factor, pseudo-IG-fold, TIG-domain, IPT-domain loop-helix; HET: DNA CIT; 2.80A {Mus musculus} PDB: 3n50_A
Probab=63.74 E-value=1.2 Score=37.59 Aligned_cols=38 Identities=18% Similarity=0.400 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhhCCCCC-CCCCCCHHHHHHHHHHHHHHH
Q psy8988 57 NLNEAFDKLRRKVPTFA-YEKRLSRIETLRLAITYISFM 94 (133)
Q Consensus 57 ~in~aF~~LR~~lP~~~-~~~klSKi~tL~~Ai~YI~~L 94 (133)
.|.-+|+.|.+.||-++ ...+|.|-.||+.|.+++..|
T Consensus 321 tIdygfqRLqK~iPrhpGdpErLpKevilkRaadl~eal 359 (402)
T 3mlp_A 321 TIDYGFQRLQKVIPRHPGDPERLPKEVILKRAADLVEAL 359 (402)
T ss_dssp TTTTTTTTTTTC-----------CHHHHHHHHHHHHHHH
T ss_pred ccccchhhhcccCCCCCCChHhChHHHHHHHHHHHHHHh
Confidence 46778999999999987 468899999999999988776
No 21
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=51.11 E-value=11 Score=20.04 Aligned_cols=20 Identities=20% Similarity=0.117 Sum_probs=16.7
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q psy8988 77 RLSRIETLRLAITYISFMSE 96 (133)
Q Consensus 77 klSKi~tL~~Ai~YI~~L~~ 96 (133)
++..|++|..|.+|+...+.
T Consensus 1 ~~~nvq~LLeAAeyLErrEr 20 (26)
T 1pd7_B 1 VRMNIQMLLEAADYLERRER 20 (26)
T ss_dssp CCCSTHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHH
Confidence 35678999999999998775
No 22
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=37.44 E-value=33 Score=22.37 Aligned_cols=20 Identities=10% Similarity=0.223 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHhhCCC
Q psy8988 52 RRRMFNLNEAFDKLRRKVPT 71 (133)
Q Consensus 52 R~R~~~in~aF~~LR~~lP~ 71 (133)
..+.+.||+||+.|.+..+-
T Consensus 57 ~~~F~~I~~AYevL~~~~~r 76 (88)
T 1iur_A 57 NEVFKHLQNEINRLEKQAFL 76 (88)
T ss_dssp HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhhccc
Confidence 34789999999999988754
No 23
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=31.78 E-value=31 Score=21.81 Aligned_cols=17 Identities=24% Similarity=0.384 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHhhC
Q psy8988 53 RRMFNLNEAFDKLRRKV 69 (133)
Q Consensus 53 ~R~~~in~aF~~LR~~l 69 (133)
.+++.||+||+.|.+.+
T Consensus 50 ~~f~~i~~AYe~L~~~~ 66 (79)
T 1faf_A 50 ALMQELNSLWGTFKTEV 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHH
Confidence 47999999999998743
No 24
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=24.51 E-value=48 Score=20.37 Aligned_cols=15 Identities=33% Similarity=0.361 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhh
Q psy8988 54 RMFNLNEAFDKLRRK 68 (133)
Q Consensus 54 R~~~in~aF~~LR~~ 68 (133)
+++.||.|++.|.+.
T Consensus 53 ~f~~i~~Aye~L~~~ 67 (71)
T 2guz_A 53 LATKINEAKDFLEKR 67 (71)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh
Confidence 789999999999874
No 25
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=21.99 E-value=71 Score=18.06 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy8988 49 IRERRRMFNLNEAFDKLRR 67 (133)
Q Consensus 49 ~RER~R~~~in~aF~~LR~ 67 (133)
..|+.=|+.+|+.|..--+
T Consensus 2 ~~EKe~mq~LNdrlAsyid 20 (39)
T 1gk7_A 2 SNEKVELQELNDRFANYID 20 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHH
Confidence 4688889999998875433
No 26
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.59 E-value=55 Score=20.14 Aligned_cols=15 Identities=27% Similarity=0.488 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHh
Q psy8988 53 RRMFNLNEAFDKLRR 67 (133)
Q Consensus 53 ~R~~~in~aF~~LR~ 67 (133)
.+++.||+||+.|.+
T Consensus 48 ~~f~~i~~Ay~~L~d 62 (79)
T 2dn9_A 48 EKFSQLAEAYEVLSD 62 (79)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCC
Confidence 478999999999975
No 27
>2kt9_A Probable 30S ribosomal protein PSRP-3; structural genomics, northeast structural genomics consortium (NESG), target SGR46, PSI-2; NMR {Synechocystis SP}
Probab=21.07 E-value=26 Score=24.83 Aligned_cols=39 Identities=23% Similarity=0.408 Sum_probs=28.3
Q ss_pred HHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q psy8988 59 NEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSEL 97 (133)
Q Consensus 59 n~aF~~LR~~lP~~~~~~klSKi~tL~~Ai~YI~~L~~~ 97 (133)
++|.+.|+..|-.-+=-....+|.+|..|.+-|++=|+.
T Consensus 45 ~DAWe~LK~eLEsK~WIse~e~i~lLN~~TeiIN~WQe~ 83 (116)
T 2kt9_A 45 ADAWQQLKDELEAKHWIAEADRINVLNQATEVINFWQDL 83 (116)
T ss_dssp SCHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 367788888773322223356899999999999999983
No 28
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.83 E-value=57 Score=20.71 Aligned_cols=16 Identities=19% Similarity=0.453 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHh
Q psy8988 52 RRRMFNLNEAFDKLRR 67 (133)
Q Consensus 52 R~R~~~in~aF~~LR~ 67 (133)
..+++.||+||+.|.+
T Consensus 46 ~~~f~~i~~Ay~~L~d 61 (88)
T 2ctr_A 46 EAKFREIAEAYETLSD 61 (88)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCC
Confidence 4578999999999976
No 29
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.55 E-value=58 Score=20.75 Aligned_cols=16 Identities=19% Similarity=0.399 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHhh
Q psy8988 53 RRMFNLNEAFDKLRRK 68 (133)
Q Consensus 53 ~R~~~in~aF~~LR~~ 68 (133)
.+++.||+||+.|.+-
T Consensus 51 ~~f~~i~~Ay~~L~d~ 66 (92)
T 2dmx_A 51 KKFKLVSEAYEVLSDS 66 (92)
T ss_dssp HHHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHHCCH
Confidence 4789999999999764
No 30
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=20.21 E-value=59 Score=20.60 Aligned_cols=16 Identities=19% Similarity=0.526 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHh
Q psy8988 52 RRRMFNLNEAFDKLRR 67 (133)
Q Consensus 52 R~R~~~in~aF~~LR~ 67 (133)
..+.+.||+||+.|.+
T Consensus 56 ~~~f~~i~~Ay~~L~d 71 (88)
T 2cug_A 56 EDRFIQISKAYEILSN 71 (88)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCC
Confidence 4578999999999975
Done!