RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8988
         (133 letters)



>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 68

 Score = 64.9 bits (158), Expect = 8e-16
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 33 KTRRRVATLAQRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYIS 92
          + +R+     +R+AA +RERRR+  +NEAF+ L+R   +    +RL ++E LR AI YI 
Sbjct: 2  ELKRKTTNADRRKAATMRERRRLSKVNEAFETLKRSTSSN-PNQRLPKVEILRNAIRYIE 60

Query: 93 FMSELLH 99
           +  LL 
Sbjct: 61 GLQALLR 67


>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 88

 Score = 56.1 bits (135), Expect = 3e-12
 Identities = 15/58 (25%), Positives = 27/58 (46%)

Query: 42 AQRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELLH 99
           +RR  N+ ER+R   L  +F  LR ++P     ++  ++  L+ A  YI  +     
Sbjct: 5  VKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQ 62


>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 79

 Score = 54.9 bits (132), Expect = 8e-12
 Identities = 13/56 (23%), Positives = 23/56 (41%)

Query: 44 RRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELLH 99
          R   N  E+ R  +L  + +KL+  VP      R + +  L  A  +I  + +   
Sbjct: 2  RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDR 57


>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 65

 Score = 54.4 bits (131), Expect = 1e-11
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 43 QRRAANIRERRRMFNLNEAFDKLRRKVPTFAYE---KRLSRIETLRLAITYISFMSE 96
          +R   N  ERRR   +N    +L + +P  + E      S+   L  A  YI  + +
Sbjct: 5  RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQ 61


>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 63

 Score = 52.2 bits (125), Expect = 5e-11
 Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 4/58 (6%)

Query: 43 QRRAANIRERRRMFNLNEAFDKLRRKVPTFAYE----KRLSRIETLRLAITYISFMSE 96
          +R +    E+ R   L  A  +L   +P    +       S+  T+  A  YI  + +
Sbjct: 2  KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQ 59


>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 83

 Score = 51.0 bits (122), Expect = 3e-10
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 43 QRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELLH 99
          +R   N  ER+R  ++ ++F  LR  VP+    ++ SR + L  A  YI +M    H
Sbjct: 2  KRAHHNALERKRRDHIKDSFHSLRDSVPSL-QGEKASRAQILDKATEYIQYMRRKNH 57


>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 80

 Score = 44.2 bits (104), Expect = 1e-07
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 43 QRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFMSELLH 99
          +R A N  E+R   ++N+   +L+  V     E +L++   LR AI YI F+     
Sbjct: 6  KRTAHNAIEKRYRSSINDKIIELKDLVVG--TEAKLNKSAVLRKAIDYIRFLQHSNQ 60


>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 61

 Score = 27.4 bits (61), Expect = 0.13
 Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 56 FNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYISFM 94
           ++N+   +L+  V     + ++ +   LR AI YI ++
Sbjct: 2  SSINDKIIELKDLVM--GTDAKMHKSGVLRKAIDYIKYL 38


>d1vjza_ c.1.8.3 (A:) Endoglucanase homologue TM1752 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 325

 Score = 28.1 bits (61), Expect = 0.32
 Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 2/54 (3%)

Query: 52  RRRMFNLNEAFDKLRRKVPTFAYEKRLSR--IETLRLAITYISFMSELLHGTPN 103
           R R FNL EAF               +++     +R+ + ++ +          
Sbjct: 3   RWRGFNLLEAFSIKSTGNFKEEDFLWMAQWDFNFVRIPMCHLLWSDRGNPFIIR 56


>d1m53a2 c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Klebsiella
           sp., lx3 [TaxId: 576]}
          Length = 478

 Score = 25.4 bits (54), Expect = 2.7
 Identities = 8/58 (13%), Positives = 18/58 (31%), Gaps = 5/58 (8%)

Query: 17  SGHGGSSTGTNGGHTKKTRRRVATLAQRRAANIRERRRMFNLNEAFDKLRRKVPTFAY 74
           + + G + G    H       +    +    +      + N  +   +LR  +P   Y
Sbjct: 426 TLNAGFTRGKPWFHINPNYVEINAEREETRED-----SVLNYYKKMIQLRHHIPALVY 478


>d1xova2 c.56.5.6 (A:1-180) Endolysin Ply, catalytic domain
          {Bacteriophage Psa [TaxId: 171618]}
          Length = 180

 Score = 24.2 bits (52), Expect = 5.0
 Identities = 6/38 (15%), Positives = 11/38 (28%), Gaps = 5/38 (13%)

Query: 18 GHGGSSTGTNGGH-----TKKTRRRVATLAQRRAANIR 50
          GH     G           +K     +   +R   N++
Sbjct: 9  GHSDKCVGAEDILSEIKEAEKVLNAASDELKREGHNVK 46


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0552    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 483,573
Number of extensions: 20662
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 13
Length of query: 133
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 57
Effective length of database: 1,364,116
Effective search space: 77754612
Effective search space used: 77754612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.7 bits)