Query psy899
Match_columns 411
No_of_seqs 166 out of 195
Neff 5.6
Searched_HMMs 46136
Date Sat Aug 17 00:51:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy899.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/899hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2545|consensus 100.0 1.2E-79 2.6E-84 614.7 25.3 346 13-391 190-543 (543)
2 COG1241 MCM2 Predicted ATPase 100.0 2.7E-52 5.8E-57 446.6 30.0 355 3-395 175-604 (682)
3 KOG0480|consensus 100.0 1.6E-46 3.5E-51 392.3 27.4 354 3-393 203-653 (764)
4 KOG0482|consensus 100.0 1.4E-45 3E-50 377.5 20.6 339 7-383 234-638 (721)
5 KOG0481|consensus 100.0 7E-44 1.5E-48 365.3 25.6 371 4-393 215-681 (729)
6 PTZ00111 DNA replication licen 100.0 5.3E-43 1.2E-47 382.9 28.7 341 4-383 306-804 (915)
7 KOG0478|consensus 100.0 9.7E-42 2.1E-46 358.7 25.3 343 4-384 309-725 (804)
8 KOG0479|consensus 100.0 6.8E-41 1.5E-45 347.1 26.0 340 3-382 192-641 (818)
9 smart00350 MCM minichromosome 100.0 7.1E-39 1.5E-43 337.5 29.5 344 4-383 84-504 (509)
10 KOG0477|consensus 100.0 5.2E-38 1.1E-42 327.5 24.0 341 3-383 337-757 (854)
11 PF00493 MCM: MCM2/3/5 family 100.0 1.7E-37 3.6E-42 311.2 3.8 265 83-384 13-327 (331)
12 PF13615 Racemase_4: Putative 100.0 1.2E-29 2.5E-34 214.9 7.5 101 89-192 1-102 (102)
13 TIGR02442 Cob-chelat-sub cobal 99.0 8.8E-08 1.9E-12 104.4 23.4 244 95-384 5-305 (633)
14 TIGR02031 BchD-ChlD magnesium 98.9 1.7E-07 3.7E-12 101.4 20.2 238 101-384 2-259 (589)
15 TIGR02030 BchI-ChlI magnesium 98.6 5.1E-06 1.1E-10 84.4 20.5 242 95-384 5-310 (337)
16 PRK13407 bchI magnesium chelat 98.5 2.6E-05 5.6E-10 79.2 20.8 240 95-382 9-305 (334)
17 TIGR00368 Mg chelatase-related 98.4 1.2E-05 2.5E-10 85.8 18.1 208 125-382 210-498 (499)
18 PRK09862 putative ATP-dependen 98.3 1.3E-05 2.7E-10 85.6 16.3 215 125-383 209-492 (506)
19 CHL00081 chlI Mg-protoporyphyr 98.3 0.00014 3E-09 74.5 22.8 240 95-384 18-323 (350)
20 PRK13531 regulatory ATPase Rav 98.2 0.0004 8.7E-09 73.8 24.1 240 82-378 8-279 (498)
21 TIGR00764 lon_rel lon-related 98.2 4.2E-05 9.2E-10 83.3 16.7 169 183-393 207-401 (608)
22 PRK13406 bchD magnesium chelat 98.0 0.00026 5.5E-09 77.0 16.8 228 99-384 8-251 (584)
23 CHL00181 cbbX CbbX; Provisiona 97.8 0.00063 1.4E-08 67.6 15.4 222 85-342 14-251 (287)
24 COG1239 ChlI Mg-chelatase subu 97.3 0.02 4.3E-07 59.9 18.2 251 91-391 14-330 (423)
25 TIGR02881 spore_V_K stage V sp 97.2 0.011 2.4E-07 57.4 14.8 182 125-342 41-235 (261)
26 COG0714 MoxR-like ATPases [Gen 97.0 0.13 2.8E-06 51.8 21.2 248 83-378 13-291 (329)
27 PRK13765 ATP-dependent proteas 97.0 0.007 1.5E-07 66.6 12.8 161 182-381 215-398 (637)
28 PF01078 Mg_chelatase: Magnesi 96.6 0.0082 1.8E-07 57.3 8.3 132 95-251 4-157 (206)
29 TIGR02640 gas_vesic_GvpN gas v 96.4 0.057 1.2E-06 52.7 13.1 203 127-381 22-255 (262)
30 TIGR02880 cbbX_cfxQ probable R 96.4 0.079 1.7E-06 52.5 13.9 219 87-342 15-250 (284)
31 COG1067 LonB Predicted ATP-dep 95.9 0.035 7.7E-07 61.2 9.7 176 182-393 214-409 (647)
32 COG0606 Predicted ATPase with 95.9 0.06 1.3E-06 57.2 10.9 124 96-244 181-327 (490)
33 TIGR02902 spore_lonB ATP-depen 95.7 0.71 1.5E-05 49.9 18.3 219 96-381 67-330 (531)
34 PRK10787 DNA-binding ATP-depen 95.4 0.28 6E-06 55.5 14.3 214 90-339 318-549 (784)
35 TIGR02329 propionate_PrpR prop 95.2 0.68 1.5E-05 50.1 15.9 188 123-339 232-444 (526)
36 PRK15424 propionate catabolism 94.8 0.52 1.1E-05 51.2 13.9 195 123-339 239-459 (538)
37 PRK11608 pspF phage shock prot 94.7 0.18 3.8E-06 51.0 9.4 112 126-251 29-149 (326)
38 TIGR02974 phageshock_pspF psp 94.4 0.18 4E-06 51.1 8.8 113 125-251 21-142 (329)
39 PF00158 Sigma54_activat: Sigm 94.0 0.11 2.5E-06 47.6 5.7 113 125-251 21-142 (168)
40 TIGR02639 ClpA ATP-dependent C 93.6 1.4 3.1E-05 49.4 14.6 128 86-230 446-583 (731)
41 COG2204 AtoC Response regulato 93.5 0.54 1.2E-05 50.1 10.4 186 125-339 163-368 (464)
42 TIGR01613 primase_Cterm phage/ 93.3 4.7 0.0001 40.1 16.4 134 88-251 43-180 (304)
43 PF13654 AAA_32: AAA domain; P 93.2 0.6 1.3E-05 50.4 10.3 159 182-382 321-505 (509)
44 TIGR01242 26Sp45 26S proteasom 93.1 4.6 0.0001 41.2 16.3 36 328-381 326-361 (364)
45 PRK05022 anaerobic nitric oxid 92.7 1.2 2.6E-05 47.8 11.8 181 125-339 209-414 (509)
46 PF07728 AAA_5: AAA domain (dy 92.4 0.24 5.3E-06 42.8 5.1 89 128-231 1-96 (139)
47 PRK11034 clpA ATP-dependent Cl 92.2 2.6 5.6E-05 47.7 14.1 129 86-230 450-587 (758)
48 PRK11388 DNA-binding transcrip 92.2 1.4 3E-05 48.4 11.7 113 125-251 347-465 (638)
49 PRK10865 protein disaggregatio 91.8 1.9 4.2E-05 49.3 12.8 131 86-230 560-700 (857)
50 PRK10923 glnG nitrogen regulat 91.6 2.4 5.1E-05 44.4 12.3 115 123-251 158-281 (469)
51 TIGR03346 chaperone_ClpB ATP-d 91.5 9.4 0.0002 43.7 17.8 130 87-230 558-697 (852)
52 TIGR02915 PEP_resp_reg putativ 91.2 1.3 2.8E-05 45.9 9.8 113 125-251 161-282 (445)
53 TIGR02903 spore_lon_C ATP-depe 91.0 4.5 9.7E-05 44.7 14.1 97 128-236 177-301 (615)
54 PRK10820 DNA-binding transcrip 90.4 2.4 5.3E-05 45.6 11.2 113 125-251 226-347 (520)
55 TIGR01817 nifA Nif-specific re 90.4 2.5 5.3E-05 45.5 11.2 113 125-251 218-339 (534)
56 PF07726 AAA_3: ATPase family 90.3 0.72 1.6E-05 41.2 5.9 100 128-249 1-107 (131)
57 PRK10365 transcriptional regul 88.9 1.7 3.7E-05 44.8 8.4 112 126-251 162-282 (441)
58 PRK05342 clpX ATP-dependent pr 88.4 2 4.4E-05 45.1 8.6 131 87-230 64-217 (412)
59 TIGR03345 VI_ClpV1 type VI sec 88.1 4 8.7E-05 46.8 11.3 159 75-251 548-717 (852)
60 PRK05201 hslU ATP-dependent pr 87.9 6.5 0.00014 41.8 11.8 138 189-339 244-400 (443)
61 TIGR01818 ntrC nitrogen regula 87.6 11 0.00024 39.2 13.5 113 125-251 156-277 (463)
62 PRK15429 formate hydrogenlyase 87.5 4.9 0.00011 44.7 11.4 183 124-340 397-604 (686)
63 PRK15115 response regulator Gl 87.4 5 0.00011 41.6 10.8 115 123-251 154-277 (444)
64 TIGR01650 PD_CobS cobaltochela 86.9 22 0.00048 36.4 14.7 92 128-231 66-166 (327)
65 PTZ00361 26 proteosome regulat 86.6 5 0.00011 42.6 10.3 193 128-385 219-426 (438)
66 PRK08084 DNA replication initi 85.9 14 0.0003 35.4 12.2 33 127-164 46-82 (235)
67 TIGR03420 DnaA_homol_Hda DnaA 85.8 17 0.00036 33.8 12.5 50 303-379 175-224 (226)
68 TIGR02653 Lon_rel_chp conserve 85.7 19 0.00042 40.2 14.5 237 86-399 184-456 (675)
69 PRK03992 proteasome-activating 85.7 9.1 0.0002 39.7 11.6 189 128-381 167-370 (389)
70 PTZ00454 26S protease regulato 85.5 12 0.00026 39.1 12.4 38 328-383 349-386 (398)
71 PRK14709 hypothetical protein; 85.2 26 0.00057 37.5 15.0 123 88-236 172-294 (469)
72 TIGR00763 lon ATP-dependent pr 85.1 6 0.00013 44.8 10.6 122 88-226 314-444 (775)
73 CHL00095 clpC Clp protease ATP 84.4 6.9 0.00015 44.6 10.8 157 75-251 491-660 (821)
74 PRK13342 recombination factor 82.4 13 0.00027 38.8 11.0 85 128-231 38-123 (413)
75 TIGR00382 clpX endopeptidase C 82.2 6.5 0.00014 41.4 8.8 129 86-227 69-222 (413)
76 CHL00176 ftsH cell division pr 81.1 32 0.00068 38.4 14.0 36 328-381 386-421 (638)
77 PRK11361 acetoacetate metaboli 80.5 8.9 0.00019 39.8 9.1 114 124-251 164-286 (457)
78 PRK00080 ruvB Holliday junctio 79.4 72 0.0015 32.0 16.3 78 128-230 53-132 (328)
79 TIGR02688 conserved hypothetic 78.9 14 0.00031 39.4 9.9 70 311-397 366-447 (449)
80 PHA02244 ATPase-like protein 77.1 9.6 0.00021 39.9 8.0 109 126-251 119-229 (383)
81 TIGR00635 ruvB Holliday juncti 76.6 78 0.0017 30.9 16.2 78 128-230 32-111 (305)
82 CHL00195 ycf46 Ycf46; Provisio 75.0 46 0.001 35.9 12.7 53 96-156 230-284 (489)
83 cd00009 AAA The AAA+ (ATPases 74.3 8.6 0.00019 31.6 5.7 88 127-228 20-112 (151)
84 TIGR01241 FtsH_fam ATP-depende 72.6 43 0.00093 35.8 11.8 23 128-155 90-112 (495)
85 PF12774 AAA_6: Hydrolytic ATP 71.5 13 0.00027 36.1 6.8 119 130-265 36-160 (231)
86 PRK08903 DnaA regulatory inact 71.0 91 0.002 29.1 14.4 52 302-380 172-223 (227)
87 PF13335 Mg_chelatase_2: Magne 70.7 19 0.00041 30.2 6.9 55 305-382 41-95 (96)
88 TIGR03015 pepcterm_ATPase puta 69.2 99 0.0021 29.4 12.5 23 359-381 242-264 (269)
89 PRK00411 cdc6 cell division co 67.9 1.3E+02 0.0029 30.4 13.8 53 306-381 228-280 (394)
90 PRK06893 DNA replication initi 67.1 1.2E+02 0.0025 28.9 16.1 61 127-206 40-104 (229)
91 KOG2170|consensus 65.6 3.5 7.5E-05 42.1 1.6 145 85-251 73-223 (344)
92 COG3829 RocR Transcriptional r 63.4 11 0.00024 41.1 5.0 112 125-251 267-389 (560)
93 PF13337 Lon_2: Putative ATP-d 62.6 1.4E+02 0.0031 32.1 13.0 209 136-399 216-447 (457)
94 PRK13341 recombination factor 61.1 75 0.0016 36.1 11.2 160 128-341 54-221 (725)
95 TIGR02928 orc1/cdc6 family rep 60.9 1.8E+02 0.004 29.0 14.0 55 305-382 219-273 (365)
96 COG1221 PspF Transcriptional r 55.8 18 0.0004 38.1 5.0 144 86-252 70-223 (403)
97 PRK00149 dnaA chromosomal repl 51.7 94 0.002 32.7 9.6 23 128-155 150-172 (450)
98 TIGR00362 DnaA chromosomal rep 50.7 1.9E+02 0.0041 29.8 11.6 31 128-163 138-174 (405)
99 COG3284 AcoR Transcriptional a 49.8 13 0.00028 41.1 2.9 114 123-251 333-455 (606)
100 PRK08727 hypothetical protein; 49.8 2.4E+02 0.0051 26.9 13.9 66 289-383 163-231 (233)
101 COG2256 MGS1 ATPase related to 48.9 1.6E+02 0.0036 31.4 10.5 113 127-268 49-164 (436)
102 PF05496 RuvB_N: Holliday junc 47.2 65 0.0014 31.6 6.9 170 127-342 51-226 (233)
103 PRK11034 clpA ATP-dependent Cl 44.1 1.8E+02 0.0039 33.3 10.8 98 126-232 207-319 (758)
104 PRK14962 DNA polymerase III su 40.9 4.3E+02 0.0093 28.4 12.6 25 128-157 38-62 (472)
105 KOG1051|consensus 40.4 1.6E+02 0.0035 34.4 9.7 130 84-230 552-690 (898)
106 COG3604 FhlA Transcriptional r 40.3 53 0.0011 35.8 5.5 113 124-251 244-366 (550)
107 TIGR00390 hslU ATP-dependent p 39.8 1.3E+02 0.0029 32.1 8.4 144 183-339 236-398 (441)
108 PRK07078 hypothetical protein; 38.2 6.7E+02 0.015 28.8 18.6 243 87-379 457-722 (759)
109 TIGR02639 ClpA ATP-dependent C 38.0 98 0.0021 34.9 7.6 124 126-266 203-344 (731)
110 PF07724 AAA_2: AAA domain (Cd 37.8 1.5E+02 0.0033 27.1 7.6 85 127-230 4-109 (171)
111 PF14532 Sigma54_activ_2: Sigm 36.5 45 0.00097 28.9 3.7 76 125-226 20-95 (138)
112 PRK10733 hflB ATP-dependent me 36.1 2.1E+02 0.0047 31.8 9.7 36 328-381 355-390 (644)
113 PRK04195 replication factor C 36.0 5.6E+02 0.012 27.2 14.9 26 126-156 39-64 (482)
114 PF01443 Viral_helicase1: Vira 35.9 49 0.0011 30.7 4.1 67 131-205 3-74 (234)
115 COG2871 NqrF Na+-transporting 35.3 36 0.00078 34.8 3.2 36 6-44 228-267 (410)
116 PLN03025 replication factor C 33.8 4.9E+02 0.011 25.9 12.2 23 128-155 36-58 (319)
117 smart00382 AAA ATPases associa 32.1 36 0.00078 27.3 2.3 72 127-203 3-88 (148)
118 PRK14956 DNA polymerase III su 31.6 3.5E+02 0.0077 29.4 10.1 24 129-157 43-66 (484)
119 TIGR00390 hslU ATP-dependent p 31.3 1.5E+02 0.0032 31.8 7.1 65 87-157 5-73 (441)
120 PRK06620 hypothetical protein; 31.2 4.6E+02 0.0099 24.8 13.3 24 127-155 45-68 (214)
121 PF00004 AAA: ATPase family as 29.9 45 0.00098 27.5 2.6 89 129-228 1-97 (132)
122 PRK14964 DNA polymerase III su 29.9 7.3E+02 0.016 27.0 12.2 21 128-153 37-57 (491)
123 COG0464 SpoVK ATPases of the A 29.6 5.5E+02 0.012 27.2 11.2 65 128-203 278-345 (494)
124 PF05707 Zot: Zonular occluden 29.4 72 0.0016 29.4 4.1 13 191-203 77-89 (193)
125 PF05272 VirE: Virulence-assoc 29.4 83 0.0018 29.7 4.5 102 104-240 34-135 (198)
126 COG3283 TyrR Transcriptional r 29.3 47 0.001 35.1 2.9 112 122-251 223-342 (511)
127 PF03266 NTPase_1: NTPase; In 28.9 1.6E+02 0.0035 26.9 6.2 33 192-228 94-126 (168)
128 PF06309 Torsin: Torsin; Inte 28.2 2E+02 0.0043 25.6 6.4 56 86-147 17-72 (127)
129 PRK13889 conjugal transfer rel 28.2 63 0.0014 38.0 4.1 73 127-205 364-445 (988)
130 COG4930 Predicted ATP-dependen 27.9 1.3E+02 0.0029 32.3 6.0 218 125-397 224-462 (683)
131 TIGR03345 VI_ClpV1 type VI sec 27.0 5.6E+02 0.012 29.7 11.4 196 126-342 208-432 (852)
132 PRK07003 DNA polymerase III su 26.8 4.2E+02 0.0091 30.8 10.0 59 193-268 119-179 (830)
133 cd04486 YhcR_OBF_like YhcR_OBF 25.7 59 0.0013 26.1 2.4 19 28-46 42-60 (78)
134 PRK14086 dnaA chromosomal repl 25.3 6.7E+02 0.015 28.2 11.1 31 128-163 316-352 (617)
135 KOG0734|consensus 24.3 6.3E+02 0.014 28.4 10.3 141 195-390 398-551 (752)
136 PRK14951 DNA polymerase III su 23.8 3.6E+02 0.0079 30.1 8.8 20 129-153 41-60 (618)
137 PRK08691 DNA polymerase III su 23.7 3.2E+02 0.0068 31.2 8.3 21 129-154 41-61 (709)
138 PRK11507 ribosome-associated p 21.8 52 0.0011 26.4 1.3 14 29-42 51-64 (70)
139 PRK14949 DNA polymerase III su 21.6 4.9E+02 0.011 30.8 9.4 49 193-251 119-169 (944)
140 COG3923 PriC Primosomal replic 21.1 38 0.00082 31.6 0.5 43 358-400 125-169 (175)
141 PF13173 AAA_14: AAA domain 21.0 1.6E+02 0.0034 25.0 4.3 76 129-225 5-85 (128)
142 COG4019 Uncharacterized protei 21.0 1.5E+02 0.0033 26.7 4.2 32 286-317 22-54 (156)
143 PRK09087 hypothetical protein; 20.9 7.3E+02 0.016 23.6 15.3 30 128-163 46-75 (226)
144 cd04496 SSB_OBF SSB_OBF: A sub 20.4 92 0.002 24.9 2.6 24 27-50 58-81 (100)
145 TIGR03177 pilus_cpaB Flp pilus 20.3 1E+02 0.0022 30.1 3.3 31 16-46 110-146 (261)
No 1
>KOG2545|consensus
Probab=100.00 E-value=1.2e-79 Score=614.67 Aligned_cols=346 Identities=34% Similarity=0.537 Sum_probs=305.5
Q ss_pred CCCCCCCCccccee-----eecccCCCCEEEEEeEecCCccc-cccCCcccc-cccccccccccccccCCCChHHH-HHH
Q psy899 13 QPPCPNGYHTRLAQ-----WRHRVRYPVVSKFFGTWGSGCFQ-PCENNRVER-PVMELPLKVSSTVSLKDISSEEI-AST 84 (411)
Q Consensus 13 ~p~~~~g~~~~~i~-----~~~~~rpgd~v~~~G~l~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~is~~~~-~~i 84 (411)
-||+|+-.-++|++ +.-.+..+|.|+|+||+..++-- ..+..+-.. ..|+-+ +++...--.++.++-. .++
T Consensus 190 ePPlps~ds~aClVKvYe~~et~~qvnd~vdf~Gilsvdp~la~ld~ld~~~~ae~qa~-hvq~lqh~nPllp~ilr~el 268 (543)
T KOG2545|consen 190 EPPLPSNDSGACLVKVYEGMETKVQVNDAVDFIGILSVDPELASLDGLDCLHMAEFQAY-HVQALQHPNPLLPEILRKEL 268 (543)
T ss_pred CCCCCCCCCCceEEEEecCcccceehhhhhhhheeeecChhhhcCCCcccccHHHHHHH-HHhccCCCCccchHHHHHHh
Confidence 36799999999976 55569999999999999866211 112111110 000000 1111111124555555 678
Q ss_pred HHHHHHHHHhhhcCcHHHHHHHHHHHhcceeeecCCceeeeceEEEEeecCCCCccchhHHHHHHHHHHhccceEEeecc
Q psy899 85 RKDLKLLLTQLLMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELN 164 (411)
Q Consensus 85 R~~Li~~La~~l~GD~laAEyLLL~L~S~V~~r~d~~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt 164 (411)
|++|+.||+.+|+||.+|||||+|||+|.||+|+|+ .++|+|+|||+| ||.+ +.|.++|+.+|+.|+|+++++|||
T Consensus 269 ~~~Llkylt~~Lg~d~iAAeyLllhLlStV~~R~d~-l~iGkftlNL~n--cpke-s~f~tqLy~iL~~Llpas~~~pmt 344 (543)
T KOG2545|consen 269 RPKLLKYLTKVLGNDNIAAEYLLLHLLSTVYHRTDG-LVIGKFTLNLTN--CPKE-SIFVTQLYSILRPLLPASVIQPMT 344 (543)
T ss_pred hHHHHHHHHHhhcCchHHHHHHHHHHHHHhhccccc-eEeeeeEEeecC--CCch-hHHHHHHHHHHHHhchhhheeeee
Confidence 899999999999999999999999999999999999 999999999999 9998 599999999999999999999999
Q ss_pred ccccccCCcceeecCCCCcccccceeeeCCcEEEEecCCCCCCccccccchHHHHHHHHHHcCccceeecCCccccccCC
Q psy899 165 VKSLNETTMIPRKDYNTNRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDI 244 (411)
Q Consensus 165 ~~~LN~~~l~P~kD~~~~~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl 244 (411)
+++||++.|.|+|||++|+|.+|+||||+|||+|||||.|++|+||..||+|+++|+++|++|+|.|||+||+|++++|+
T Consensus 345 ie~lNta~f~PkkDyetNrLvsgvLQlapgThLVLDETeLqqGtLn~vGvhnvq~LsnLI~~Qkl~ydfqyyqme~~~nv 424 (543)
T KOG2545|consen 345 IEELNTAPFYPKKDYETNRLVSGVLQLAPGTHLVLDETELQQGTLNDVGVHNVQFLSNLISQQKLTYDFQYYQMEVHSNV 424 (543)
T ss_pred HHhhcccCccccccccccccccceeecCCCceEEeehhhcCCCccCccchhhHHHHHHHhhccccceecceEEEEeccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEeecCCCCCCcceEEEecCCCCCchhHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHHhh
Q psy899 245 PVLSLSDTKSMLPSDCHIKLKPDPSCSSVIRETFSAAHQYLKPELLNKIRTYISWIQNRGFDIPENLTEIVQKDFVEMRK 324 (411)
Q Consensus 245 ~vliLS~gKS~lp~Dl~vpl~~~~~~~~~~~e~i~~~~~~~~~~~l~~lR~YLa~aR~~~~~i~ee~~~~IqddFV~~R~ 324 (411)
+++|+|+|+||+|.|+.++++|+..+. +++..|+.+++||.|++.+|+..++|++|++++||+|||+|||
T Consensus 425 ~vlIlSeGrsilPADl~i~lqp~~v~~----------le~~tps~l~q~rcyltt~r~l~~nIsee~t~~iq~dfV~mRq 494 (543)
T KOG2545|consen 425 RVLILSEGRSILPADLGIRLQPDSVDT----------LEFPTPSDLLQFRCYLTTMRNLRANISEEMTDYIQSDFVSMRQ 494 (543)
T ss_pred eEEEeeCCcccCcccccccCCCCCCCc----------cccCChhHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHHHHh
Confidence 999999999999999999999887432 3456899999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHhhhccccCCcccchhhHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhccc
Q psy899 325 ENKKTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALAMEKERKSRPR 391 (411)
Q Consensus 325 ~~~~it~~dLh~ll~LAR~~~~~~~~~~~~~~~~~rLlalS~G~~~lt~e~W~~a~~LE~~R~~R~~ 391 (411)
.++.++++|||.+|++|| ++++|+|+++||+|+|+.|++||+.|+.|++
T Consensus 495 ~n~~snaddLs~lLv~sR------------------lls~S~G~ttlsre~wq~a~ele~lrr~rlq 543 (543)
T KOG2545|consen 495 YNKESNADDLSLLLVCSR------------------LLSKSFGRTTLSREDWQAARELENLRRVRLQ 543 (543)
T ss_pred hCcccchhHHHHHHHHHH------------------HHHHhhccchhhHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999 9999999999999999999999999999974
No 2
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.7e-52 Score=446.63 Aligned_cols=355 Identities=20% Similarity=0.180 Sum_probs=304.1
Q ss_pred CcCccceeecCCC-CCCCCccccee------eecccCCCCEEEEEeEecCCccccccCCccccccccccccccc-c----
Q psy899 3 RDMSSLDVQKQPP-CPNGYHTRLAQ------WRHRVRYPVVSKFFGTWGSGCFQPCENNRVERPVMELPLKVSS-T---- 70 (411)
Q Consensus 3 ~~~~~~~~q~~p~-~~~g~~~~~i~------~~~~~rpgd~v~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~---- 70 (411)
.|-.+++|||.|+ +|||++|++++ +++.++|||||.++||++..+......+ ...+.|+.++++.+ +
T Consensus 175 ~d~Q~vkiQE~pe~~p~g~~Prs~~vil~~dlv~~~~pGdrV~itGi~~~~~~~~~~~~-~~~~~~~~~~~a~~v~~~~~ 253 (682)
T COG1241 175 IDFQKVKIQELPELVPGGELPRSIEVILEDDLVDSVRPGDRVKITGVVRIVPSRSLSGR-RKGPVFEIYLEANSVEKLDK 253 (682)
T ss_pred eeceEEEEecCcccCCCCCCCceEEEEEecCcccccCCCCEEEEEEEEecccccccccc-cCCceEEEEEEEEEEEeccc
Confidence 3667899999997 99999999997 8999999999999999987742222122 22377888887744 1
Q ss_pred cccCCCChHHHH---------HHHHHHHHHHHhhhcCcHHHHHHHHHHHhcceeee-cCCceeeeceEEEEeecCCCCcc
Q psy899 71 VSLKDISSEEIA---------STRKDLKLLLTQLLMGDDVAADYLICYLLSRVYCR-DEVGFALGKFSLNIFHRDLATSC 140 (411)
Q Consensus 71 ~~~~~is~~~~~---------~iR~~Li~~La~~l~GD~laAEyLLL~L~S~V~~r-~d~~~~lG~~sLnL~g~~~P~~~ 140 (411)
.....+|+++.+ ++++.|+++|+|+++|++.+++++||+|||+|... +||+..+|++|++|+| +|+++
T Consensus 254 ~~~~~~t~ed~e~i~elak~~~i~~~l~~SiaPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvG--DPgta 331 (682)
T COG1241 254 REEVEITEEDEEEIKELAKRPDIYDILIKSIAPSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVG--DPGTA 331 (682)
T ss_pred hhhccCCHHHHHHHHHHhcCCcHHHHHHHHhcccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcC--CCchh
Confidence 144578888875 57788999999999999999999999999999985 7787899999999999 99999
Q ss_pred chhHHHHHHHHHHhccceEEeeccccccccCCcceeecCC--CCcccccceeeeCCcEEEEecCCCCCCccccccchHHH
Q psy899 141 SDYAQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDYN--TNRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVK 218 (411)
Q Consensus 141 ~~~~s~L~~~l~~L~Prs~yl~lt~~~LN~~~l~P~kD~~--~~~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~N~~ 218 (411)
||||++++..++||++|+++..++..+++++-++|.. .|.|++|+|+|||||++||||+ |+|...++.
T Consensus 332 ---KSqlLk~v~~~aPr~vytsgkgss~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEf-------dKm~~~dr~ 401 (682)
T COG1241 332 ---KSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEF-------DKMNEEDRV 401 (682)
T ss_pred ---HHHHHHHHHhhCCceEEEccccccccCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEec-------cCCChHHHH
Confidence 9999999999999999999977777777777788865 5899999999999999999999 577889999
Q ss_pred HHHHHHHcCccc--------------------------eeecCCccccccCCCeeEeecCCCCCCcceEEEecCCCCC--
Q psy899 219 ALSSVVNNQRMS--------------------------YDFQFYDGTFPTDIPVLSLSDTKSMLPSDCHIKLKPDPSC-- 270 (411)
Q Consensus 219 AL~~li~~Q~v~--------------------------YdF~y~~ie~~~Dl~vliLS~gKS~lp~Dl~vpl~~~~~~-- 270 (411)
|||++|+||+|+ || ++.++..++|+|..+||| ||++|++.++++.
T Consensus 402 aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd-~~~~~~enI~l~~~lLSR------FDLifvl~D~~d~~~ 474 (682)
T COG1241 402 AIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYD-PKKTVAENINLPAPLLSR------FDLIFVLKDDPDEEK 474 (682)
T ss_pred HHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCC-CCCCHHHhcCCChhHHhh------CCeeEEecCCCCccc
Confidence 999999999999 56 777899999999999999 9999999999864
Q ss_pred chhHHHHHHHhhhcCChh--------------hHHHHHHHHHHhhc-cCCCCChhHHHHHHHHHHHHhhcC--------C
Q psy899 271 SSVIRETFSAAHQYLKPE--------------LLNKIRTYISWIQN-RGFDIPENLTEIVQKDFVEMRKEN--------K 327 (411)
Q Consensus 271 ~~~~~e~i~~~~~~~~~~--------------~l~~lR~YLa~aR~-~~~~i~ee~~~~IqddFV~~R~~~--------~ 327 (411)
|..+++|+...|....++ +.+.+|+||+|||. ..|.|++++.++|.+.||+||+.+ -
T Consensus 475 D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~ 554 (682)
T COG1241 475 DEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTI 554 (682)
T ss_pred hHHHHHHHHHHHhccccccccccccccccccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCcc
Confidence 888999999888643333 47889999999997 779999999999999999999954 1
Q ss_pred CCCHHHHHHHHHHHhhhccccCCcccchhhHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhccccccc
Q psy899 328 KTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALAMEKERKSRPRLGLR 395 (411)
Q Consensus 328 ~it~~dLh~ll~LAR~~~~~~~~~~~~~~~~~rLlalS~G~~~lt~e~W~~a~~LE~~R~~R~~~~~~ 395 (411)
+||+++|+++++||+ .+|-..=...++.++-+.|..|=..-........+
T Consensus 555 piT~RqLEsiiRLae------------------A~Ak~rLS~~V~~eD~~eAi~lv~~~l~~v~~dp~ 604 (682)
T COG1241 555 PITARQLESIIRLAE------------------AHAKMRLSDVVEEEDVDEAIRLVDFSLKTVAVDPE 604 (682)
T ss_pred cccHHHHHHHHHHHH------------------HHHhhhccCCCCHHHHHHHHHHHHHHHHHhhcCcc
Confidence 799999999999999 78888888999999999998876644444444433
No 3
>KOG0480|consensus
Probab=100.00 E-value=1.6e-46 Score=392.28 Aligned_cols=354 Identities=19% Similarity=0.173 Sum_probs=295.9
Q ss_pred CcCccceeecCC-CCCCCCccccee------eecccCCCCEEEEEeEecCCc--------cccccCCc-cccccccccc-
Q psy899 3 RDMSSLDVQKQP-PCPNGYHTRLAQ------WRHRVRYPVVSKFFGTWGSGC--------FQPCENNR-VERPVMELPL- 65 (411)
Q Consensus 3 ~~~~~~~~q~~p-~~~~g~~~~~i~------~~~~~rpgd~v~~~G~l~~~~--------~~~~~~~~-~~~~~~~~~~- 65 (411)
.|..||+|||-- |+|+|..|+.++ +++.+.|||+|+|||++...+ ....+.+. .+.-.+=.++
T Consensus 203 ~D~QkIrIQE~~~E~p~GsiPRtvdviLr~dlVe~~~pGD~v~~TGiliVvpdv~~l~~pgsk~~n~r~~~~~~~i~~lk 282 (764)
T KOG0480|consen 203 LDWQKIRIQELQAEIPRGSIPRTVDVILRGDLVETAQPGDKVDITGILIVVPDVSQLGGPGSKAENNRGGETGDGITGLK 282 (764)
T ss_pred eeeeeeehhhhhhhCCCCCCCceeEEEEhhhhHhhcCCCCEEEEEEEEEEecChHHhcCCccccccccCCCcccceeeeh
Confidence 477899999999 599999999998 889999999999999998442 11123331 1100011111
Q ss_pred ----------------ccccccccC---------CCChHHHH---------HHHHHHHHHHHhhhcCcHHHHHHHHHHHh
Q psy899 66 ----------------KVSSTVSLK---------DISSEEIA---------STRKDLKLLLTQLLMGDDVAADYLICYLL 111 (411)
Q Consensus 66 ----------------~~~~~~~~~---------~is~~~~~---------~iR~~Li~~La~~l~GD~laAEyLLL~L~ 111 (411)
+++++.... ..|.+|.. +++..|+.+|.|++||++++|.-+||+||
T Consensus 283 al~Vrdl~yq~aFlac~~~~~~~~ee~~~~~~~~~~s~~e~~~~~em~~~~nly~~lv~Sl~PsIyGhe~VK~GilL~Lf 362 (764)
T KOG0480|consen 283 ALGVRDLTYQLAFLACHVQSTLAVEEDDEEDMLNSMSSEEFAEIREMSKDENLYKNLVNSLFPSIYGHELVKAGILLSLF 362 (764)
T ss_pred hcccccchhhhhHhhhhcccccccchhhhHHHhhhccHHHHHHHHHHhcCchHHHHHHHhhCccccchHHHHhhHHHHHh
Confidence 112111111 24445543 67789999999999999999999999999
Q ss_pred cceeeecC-CceeeeceEEEEeecCCCCccchhHHHHHHHHHHhccceEEeeccccccccCCcceeecCCC--Ccccccc
Q psy899 112 SRVYCRDE-VGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDYNT--NRLKSGL 188 (411)
Q Consensus 112 S~V~~r~d-~~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt~~~LN~~~l~P~kD~~~--~~L~aG~ 188 (411)
|+|+++.+ ++..+|++++.|+| +|+++ |||+++....++||++|+++...+-.+++.+-+||.++ ..+|||+
T Consensus 363 GGv~K~a~eg~~lRGDinv~iVG--DPgt~---KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaaVvkD~esgdf~iEAGA 437 (764)
T KOG0480|consen 363 GGVHKSAGEGTSLRGDINVCIVG--DPGTG---KSQFLKAVCAFSPRSVYTSGKASSAAGLTAAVVKDEESGDFTIEAGA 437 (764)
T ss_pred CCccccCCCCccccCCceEEEeC--CCCcc---HHHHHHHHhccCCcceEecCcccccccceEEEEecCCCCceeeecCc
Confidence 99999855 66777999999999 99999 99999999999999999999877777777777999866 5889999
Q ss_pred eeeeCCcEEEEecCCCCCCccccccchHHHHHHHHHHcCccc--------------------------eeecCCcccccc
Q psy899 189 LQLSSSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMS--------------------------YDFQFYDGTFPT 242 (411)
Q Consensus 189 LQLa~gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~--------------------------YdF~y~~ie~~~ 242 (411)
|.|||||++||||+ |||++++-.|||++||||+|+ || .-.++..|+
T Consensus 438 LmLADnGICCIDEF-------DKMd~~dqvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYd-R~ktl~eNi 509 (764)
T KOG0480|consen 438 LMLADNGICCIDEF-------DKMDVKDQVAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYD-RKKTLRENI 509 (764)
T ss_pred EEEccCceEEechh-------cccChHhHHHHHHHHHhheehheecceEEeecchhhhhhhcCCcCCccc-cccchhhhc
Confidence 99999999999999 599999999999999999999 66 556899999
Q ss_pred CCCeeEeecCCCCCCcceEEEecCCCC--CchhHHHHHHHhhhcCCh-------hhHHHHHHHHHHhhccCCCCChhHHH
Q psy899 243 DIPVLSLSDTKSMLPSDCHIKLKPDPS--CSSVIRETFSAAHQYLKP-------ELLNKIRTYISWIQNRGFDIPENLTE 313 (411)
Q Consensus 243 Dl~vliLS~gKS~lp~Dl~vpl~~~~~--~~~~~~e~i~~~~~~~~~-------~~l~~lR~YLa~aR~~~~~i~ee~~~ 313 (411)
++...|+|| ||+.|.+-++++ .|..+++||...|..+.+ -.++++|+||.|||+..|.++.|+.+
T Consensus 510 ~msApimSR------FDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrkYi~yAR~~~P~ls~ea~~ 583 (764)
T KOG0480|consen 510 NMSAPIMSR------FDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRKYIRYARNFKPKLSKEASE 583 (764)
T ss_pred CCCchhhhh------hcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHHHHHHHHHhcCccccHHHHH
Confidence 999999999 999999999996 477899999988865432 26899999999999999999999999
Q ss_pred HHHHHHHHHhhcCC--------CCCHHHHHHHHHHHhhhccccCCcccchhhHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q psy899 314 IVQKDFVEMRKENK--------KTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALAMEKE 385 (411)
Q Consensus 314 ~IqddFV~~R~~~~--------~it~~dLh~ll~LAR~~~~~~~~~~~~~~~~~rLlalS~G~~~lt~e~W~~a~~LE~~ 385 (411)
+|.+.|+.+|+.+. .||.+||+.++||++ .+|--+=..++|+++-+.|.+|=++
T Consensus 584 ~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsE------------------A~Ar~~~~devt~~~v~ea~eLlk~ 645 (764)
T KOG0480|consen 584 MLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSE------------------ARARVECRDEVTKEDVEEAVELLKK 645 (764)
T ss_pred HHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHH------------------HHHhhhhhhhccHHHHHHHHHHHHh
Confidence 99999999999772 699999999999999 6777777889999999999999877
Q ss_pred HHhccccc
Q psy899 386 RKSRPRLG 393 (411)
Q Consensus 386 R~~R~~~~ 393 (411)
=.-|....
T Consensus 646 Siv~ve~d 653 (764)
T KOG0480|consen 646 SIVRVEGD 653 (764)
T ss_pred hheeeccc
Confidence 66665444
No 4
>KOG0482|consensus
Probab=100.00 E-value=1.4e-45 Score=377.50 Aligned_cols=339 Identities=18% Similarity=0.180 Sum_probs=275.3
Q ss_pred cceeecCCC-CCCCCccccee------eecccCCCCEEEEEeEecCCccccccCCcccccccccccccc------ccccc
Q psy899 7 SLDVQKQPP-CPNGYHTRLAQ------WRHRVRYPVVSKFFGTWGSGCFQPCENNRVERPVMELPLKVS------STVSL 73 (411)
Q Consensus 7 ~~~~q~~p~-~~~g~~~~~i~------~~~~~rpgd~v~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 73 (411)
.+.+||+.+ +|-|-.|+++. ++..+.|||+|.|+||.-.-++.-...- +....-+.|+++. +....
T Consensus 234 e~kmQEls~qVPvG~IPRsltv~~~ge~tr~~~PGDvV~vsGiFLP~pytGfr~~-~aGLladtYLeAh~v~~~nk~~~~ 312 (721)
T KOG0482|consen 234 EVKMQELSDQVPVGHIPRSLTVHVYGEMTRKCQPGDVVVVSGIFLPIPYTGFRAL-KAGLLADTYLEAHRVVQINKKYDN 312 (721)
T ss_pred hhhHHHHhccCCCCccCceeEEEEecccceecCCCCEEEEeeeecccchhhHHHH-HhhhHHHHHHHHhhhhhhcccccc
Confidence 357899997 99999999997 8889999999999999653321111000 0012255666552 11111
Q ss_pred ----CCCChHHHH-----HHHHHHHHHHHhhhcCcHHHHHHHHHHHhcceeeec-CCceeeeceEEEEeecCCCCccchh
Q psy899 74 ----KDISSEEIA-----STRKDLKLLLTQLLMGDDVAADYLICYLLSRVYCRD-EVGFALGKFSLNIFHRDLATSCSDY 143 (411)
Q Consensus 74 ----~~is~~~~~-----~iR~~Li~~La~~l~GD~laAEyLLL~L~S~V~~r~-d~~~~lG~~sLnL~g~~~P~~~~~~ 143 (411)
.+.+++..+ +.+++|-.+|||.|||+++++++|||.|+|+|..++ ||-.++|++++.|+| +||.+
T Consensus 313 ~~~~~~~~~~~~~~~~~~d~yekLa~SiAPEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmG--DPGVA--- 387 (721)
T KOG0482|consen 313 IEKTGELEPEELELIAEGDFYEKLAASIAPEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMG--DPGVA--- 387 (721)
T ss_pred ccccccccHHHHHHhhcccHHHHHHHhhchhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecC--CCchh---
Confidence 144444443 578999999999999999999999999999999986 774666999999999 99999
Q ss_pred HHHHHHHHHHhccceEEeeccccccccCCcceeecCCC--CcccccceeeeCCcEEEEecCCCCCCccccccchHHHHHH
Q psy899 144 AQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDYNT--NRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVKALS 221 (411)
Q Consensus 144 ~s~L~~~l~~L~Prs~yl~lt~~~LN~~~l~P~kD~~~--~~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~N~~AL~ 221 (411)
||||++++..|+||++|+.+..++--+++.+--||.-+ -.||.|+|+|||||++||||+ |+|...++.|||
T Consensus 388 KSQLLkyi~rlapRgvYTTGrGSSGVGLTAAVmkDpvTgEM~LEGGALVLAD~GICCIDEf-------DKM~e~DRtAIH 460 (721)
T KOG0482|consen 388 KSQLLKYISRLAPRGVYTTGRGSSGVGLTAAVMKDPVTGEMVLEGGALVLADGGICCIDEF-------DKMDESDRTAIH 460 (721)
T ss_pred HHHHHHHHHhcCcccceecCCCCCccccchhhhcCCCCCeeEeccceEEEccCceEeehhh-------hhhhhhhhHHHH
Confidence 99999999999999999998666555555444677644 489999999999999999999 477779999999
Q ss_pred HHHHcCccc--------------------------eeecCCccccccCCCeeEeecCCCCCCcceEEEecCCCC--Cchh
Q psy899 222 SVVNNQRMS--------------------------YDFQFYDGTFPTDIPVLSLSDTKSMLPSDCHIKLKPDPS--CSSV 273 (411)
Q Consensus 222 ~li~~Q~v~--------------------------YdF~y~~ie~~~Dl~vliLS~gKS~lp~Dl~vpl~~~~~--~~~~ 273 (411)
++|+||+|+ |+ |..+++.++|+|..+||+ ||+.+-+++.|+ .|..
T Consensus 461 EVMEQQTISIaKAGI~TtLNAR~sILaAANPayGRYn-prrs~e~NI~LPaALLSR------FDll~Li~D~pdrd~D~~ 533 (721)
T KOG0482|consen 461 EVMEQQTISIAKAGINTTLNARTSILAAANPAYGRYN-PRRSPEQNINLPAALLSR------FDLLWLIQDRPDRDNDLR 533 (721)
T ss_pred HHHHhhhhhhhhhccccchhhhHHhhhhcCccccccC-cccChhHhcCCcHHHHHh------hhhhhhhccCCcccchHH
Confidence 999999999 66 777899999999999999 999999998885 6778
Q ss_pred HHHHHHHhhhc-------CChhhHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHHhhcCC------CCCHHHHHHHHHH
Q psy899 274 IRETFSAAHQY-------LKPELLNKIRTYISWIQNRGFDIPENLTEIVQKDFVEMRKENK------KTDANDLHTLIVL 340 (411)
Q Consensus 274 ~~e~i~~~~~~-------~~~~~l~~lR~YLa~aR~~~~~i~ee~~~~IqddFV~~R~~~~------~it~~dLh~ll~L 340 (411)
+|+|+..+|+. +.|.+++.+|.||+.||..+|.+|+++.++|...||+|||+.+ ..|++.|-.+|+|
T Consensus 534 LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRl 613 (721)
T KOG0482|consen 534 LAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRL 613 (721)
T ss_pred HHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHH
Confidence 99999999974 2445899999999999999999999999999999999999763 5899999999999
Q ss_pred HhhhccccCCcccchhhHHHHHHhhcCCCCCCHHHHHHHHHHH
Q psy899 341 ARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALAME 383 (411)
Q Consensus 341 AR~~~~~~~~~~~~~~~~~rLlalS~G~~~lt~e~W~~a~~LE 383 (411)
|- .+|-..=.+.+.+++-+.|..|=
T Consensus 614 s~------------------AlarLRls~~V~~~DV~EALRLm 638 (721)
T KOG0482|consen 614 ST------------------ALARLRLSDSVEEDDVNEALRLM 638 (721)
T ss_pred HH------------------HHHHhhhccccchhhHHHHHHHH
Confidence 98 44444555566666666665553
No 5
>KOG0481|consensus
Probab=100.00 E-value=7e-44 Score=365.27 Aligned_cols=371 Identities=18% Similarity=0.211 Sum_probs=291.2
Q ss_pred cCccceeecCCC-CCCCCccccee------eecccCCCCEEEEEeEecCCccccccCCcccc-ccccccccc--------
Q psy899 4 DMSSLDVQKQPP-CPNGYHTRLAQ------WRHRVRYPVVSKFFGTWGSGCFQPCENNRVER-PVMELPLKV-------- 67 (411)
Q Consensus 4 ~~~~~~~q~~p~-~~~g~~~~~i~------~~~~~rpgd~v~~~G~l~~~~~~~~~~~~~~~-~~~~~~~~~-------- 67 (411)
|...|.+||-|+ +|-|++|+.+. +++.+.||.||+++||.-...+-....-++.. .+-.+|+.+
T Consensus 215 D~QtLKLQE~pe~VP~GE~PRhl~L~~dRyL~~kvvPG~RvtI~GIYsI~~~~~~~~s~k~~v~iR~PyirVvGi~~ds~ 294 (729)
T KOG0481|consen 215 DQQTLKLQELPEDVPVGEMPRHLQLFCDRYLTNKVVPGNRVTIMGIYSIKKFGSTSSSDKSGVGIRTPYIRVVGIQDDSE 294 (729)
T ss_pred ehhheehhhCcccCCcCcCcchhhhhhhHHHhccccCCceEEEEEEEEeeeccccCCCCccceeeecceEEEEEEEeccC
Confidence 455789999998 99999999997 99999999999999997654222222212221 123444433
Q ss_pred -ccccccCCCChHHHH---------HHHHHHHHHHHhhhcCcHHHHHHHHHHHhcceeee-cCCceeeeceEEEEeecCC
Q psy899 68 -SSTVSLKDISSEEIA---------STRKDLKLLLTQLLMGDDVAADYLICYLLSRVYCR-DEVGFALGKFSLNIFHRDL 136 (411)
Q Consensus 68 -~~~~~~~~is~~~~~---------~iR~~Li~~La~~l~GD~laAEyLLL~L~S~V~~r-~d~~~~lG~~sLnL~g~~~ 136 (411)
++....--+|++|++ ++++.|-.+|||++||+++++.++.|-|||+-..+ +||-.-+|+++++|-| +
T Consensus 295 ~ss~~~~~~ft~eEEEeFk~la~~~d~Ye~is~sIAPSIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLG--D 372 (729)
T KOG0481|consen 295 GSSRSSATMFTPEEEEEFKKLAASPDVYERISKSIAPSIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLG--D 372 (729)
T ss_pred CccccCcccCChhHHHHHHHHhcCccHHHHHhhccCchhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEec--C
Confidence 111122256777664 68888999999999999999999999999998877 8995666999999999 9
Q ss_pred CCccchhHHHHHHHHHHhccceEEeeccccccccCCcceeecCCC--CcccccceeeeCCcEEEEecCCCCCCccccccc
Q psy899 137 ATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDYNT--NRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGC 214 (411)
Q Consensus 137 P~~~~~~~s~L~~~l~~L~Prs~yl~lt~~~LN~~~l~P~kD~~~--~~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv 214 (411)
|+++ +|||++|++.+.|-.+|+++..++-.+++..-.+|..+ ..||.|+++|||||++||||+ |+|..
T Consensus 373 PgtA---KSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEF-------DKMre 442 (729)
T KOG0481|consen 373 PGTA---KSQLLKFVEKVSPIAVYTSGKGSSAAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEF-------DKMRE 442 (729)
T ss_pred Cchh---HHHHHHHHHhcCceEEEecCCCcccccceeeEEecCCcceEEEecceEEEecCCEEEeehh-------hccCc
Confidence 9999 99999999999999999998766666666555777654 699999999999999999999 58888
Q ss_pred hHHHHHHHHHHcCccc--------------------------eeecCCccccccCCCeeEeecCCCCCCcceEEEecCCC
Q psy899 215 LNVKALSSVVNNQRMS--------------------------YDFQFYDGTFPTDIPVLSLSDTKSMLPSDCHIKLKPDP 268 (411)
Q Consensus 215 ~N~~AL~~li~~Q~v~--------------------------YdF~y~~ie~~~Dl~vliLS~gKS~lp~Dl~vpl~~~~ 268 (411)
+++-|||++|+||+++ || .+.+-+.|+|....|||+ ||++|.+++.-
T Consensus 443 ~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANpvfGRyD-d~Kt~~dNIDf~~TILSR------FDmIFIVKD~h 515 (729)
T KOG0481|consen 443 DDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANPVFGRYD-DTKTGEDNIDFMPTILSR------FDMIFIVKDEH 515 (729)
T ss_pred hhhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCCcccccc-ccCCcccccchhhhHhhh------ccEEEEEeccC
Confidence 9999999999999999 56 666789999999999999 99999999887
Q ss_pred C--CchhHHHHHHHhhhc----C------C--hhhHHHHHHHHHHhhc-cCCCCChhHHHHHHHHHHHHhhcCC------
Q psy899 269 S--CSSVIRETFSAAHQY----L------K--PELLNKIRTYISWIQN-RGFDIPENLTEIVQKDFVEMRKENK------ 327 (411)
Q Consensus 269 ~--~~~~~~e~i~~~~~~----~------~--~~~l~~lR~YLa~aR~-~~~~i~ee~~~~IqddFV~~R~~~~------ 327 (411)
+ .|..+|.|+..+|.. . . ...++.|++||.|||. +.|.+++++++.++..||.||+.-.
T Consensus 516 ~~~~D~~lAkHVI~vH~~~~n~~~~~~~~~~~ei~~~~~KryI~YcR~kc~PrLs~~AaekL~~~yV~~R~~~~q~e~~s 595 (729)
T KOG0481|consen 516 DEERDITLAKHVINVHVSKANAQTDSQEENEGEIPIEKLKRYIQYCRLKCGPRLSAEAAEKLSSRYVTMRKGVRQHEQDS 595 (729)
T ss_pred cchhhhHHHHHhhhhhccccccccCccccCCCcccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHhHHHHHHHHhhhcc
Confidence 5 477889998888863 1 1 1278999999999995 8999999999999999999998311
Q ss_pred ------CCCHHHHHHHHHHHhh-hccccCCcccch--hhHHHHH------HhhcC-----CCCCCHHHHHHHHHHHHHHH
Q psy899 328 ------KTDANDLHTLIVLARL-EHLRLRPATHYQ--VDLIRLM------SLSHG-----HSELTEDMWKVALAMEKERK 387 (411)
Q Consensus 328 ------~it~~dLh~ll~LAR~-~~~~~~~~~~~~--~~~~rLl------alS~G-----~~~lt~e~W~~a~~LE~~R~ 387 (411)
+||.+||++.+++++. -.++|.|=+--- -.-.||. |++.| +.-.|.|+-+.+.+.|.+-+
T Consensus 596 ~~rssIPITVRQLEAIiRI~ESLAKm~Ls~~ate~hV~EA~RLF~vSTmdAa~~g~l~g~egf~s~e~~e~i~rie~qlk 675 (729)
T KOG0481|consen 596 DKRSSIPITVRQLEAIIRIAESLAKMELSPFATEAHVEEALRLFQVSTMDAASQGTLAGVEGFTSPEDQEEIKRIEKQLK 675 (729)
T ss_pred cccCCCceeHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHhHhhHHHHhcCchhcccccCCHHHHHHHHHHHHHHH
Confidence 8999999999999871 112333321110 1122332 44444 22367788888889998888
Q ss_pred hccccc
Q psy899 388 SRPRLG 393 (411)
Q Consensus 388 ~R~~~~ 393 (411)
.|+.-+
T Consensus 676 rr~~IG 681 (729)
T KOG0481|consen 676 RRFAIG 681 (729)
T ss_pred Hhcccc
Confidence 886654
No 6
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=100.00 E-value=5.3e-43 Score=382.93 Aligned_cols=341 Identities=12% Similarity=0.103 Sum_probs=276.8
Q ss_pred cCccceeecCCC-CCCCCcc--------------------ccee------eecccCCCCEEEEEeEecCCccccccCCcc
Q psy899 4 DMSSLDVQKQPP-CPNGYHT--------------------RLAQ------WRHRVRYPVVSKFFGTWGSGCFQPCENNRV 56 (411)
Q Consensus 4 ~~~~~~~q~~p~-~~~g~~~--------------------~~i~------~~~~~rpgd~v~~~G~l~~~~~~~~~~~~~ 56 (411)
|--+|+|||.|+ +|+|.+| ++|+ ++|.++|||||+|+||++............
T Consensus 306 D~Q~IklQE~pe~vp~G~~P~~~~~~~~~~~~~~~~~~~~rsi~v~l~dDLVD~v~PGDrV~VtGIl~~~~~~~~~~~~~ 385 (915)
T PTZ00111 306 TKKIVKLLQSNSSLNNPDKDGLDNSVDNSGLNGEIYMKDNEVINLNLYDDLIDSVKTGDRVTVVGILKVTPIRTSTTRRT 385 (915)
T ss_pred eeeEEEEeeCcccCCCCCCCccccccccccccccccccCCceEEEEEecchhccCCCCCEEEEEEEEEeccccccccccc
Confidence 567899999997 9999999 9887 999999999999999999663222211111
Q ss_pred ccccccccccccc-cc-----------------ccCCCChHHHH---------HHHHHHHHHHHhhhcCcHHHHHHHHHH
Q psy899 57 ERPVMELPLKVSS-TV-----------------SLKDISSEEIA---------STRKDLKLLLTQLLMGDDVAADYLICY 109 (411)
Q Consensus 57 ~~~~~~~~~~~~~-~~-----------------~~~~is~~~~~---------~iR~~Li~~La~~l~GD~laAEyLLL~ 109 (411)
....|++|+++.+ +. .+.++|+++.+ ++++.|+.+|+|.|+|++.+++++||+
T Consensus 386 ~~~~~~~yl~~~~i~~~~~~~~~~~~~~~~~~~~~~~~t~ed~~~I~~ls~~p~i~~~L~~SiaP~I~G~e~vK~ailL~ 465 (915)
T PTZ00111 386 LKSLYTYFVNVIHVKVINSTNANQPEKGLKYLGNENDFSDLQVYKILELSRNPMIYRILLDSFAPSIKARNNVKIGLLCQ 465 (915)
T ss_pred cccccceEEEEEEEEEeccccccccccccccccccccCCHHHHHHHHHHhcCHHHHHHHHHHhCCeEECCHHHHHHHHHH
Confidence 2356788885522 10 22368888764 677889999999999999999999999
Q ss_pred Hhcceeee------cCC----ceeeeceEEEEeecCCCCccchhHHHHHHHHHHhccceEEeecc---ccccccCCccee
Q psy899 110 LLSRVYCR------DEV----GFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELN---VKSLNETTMIPR 176 (411)
Q Consensus 110 L~S~V~~r------~d~----~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt---~~~LN~~~l~P~ 176 (411)
|||++... +|| +..+|++|++|+| +||++ |++|.+++..+.||+.|+++. ..+|.+.. -.
T Consensus 466 L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvG--DPGTG---KSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~--~~ 538 (915)
T PTZ00111 466 LFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCG--DPGTA---KSQLLHYTHLLSPRSIYTSGKSSSSVGLTASI--KF 538 (915)
T ss_pred HhcCCccccccccccccccccccccCCceEEEeC--CCCcc---HHHHHHHHHHhCCccccCCCCCCccccccchh--hh
Confidence 99999642 333 5789999999999 99999 999999999999999998764 33344332 11
Q ss_pred ecC--CCCcccccceeeeCCcEEEEecCCCCCCccccccchHHHHHHHHHHcCccc------------------------
Q psy899 177 KDY--NTNRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMS------------------------ 230 (411)
Q Consensus 177 kD~--~~~~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~------------------------ 230 (411)
++. +.|.+++|+|++|+||++||||.+ ++......+|+++|++|+++
T Consensus 539 ~d~~tG~~~le~GaLvlAdgGtL~IDEid-------kms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~ 611 (915)
T PTZ00111 539 NESDNGRAMIQPGAVVLANGGVCCIDELD-------KCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPIN 611 (915)
T ss_pred cccccCcccccCCcEEEcCCCeEEecchh-------hCCHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcc
Confidence 332 458999999999999999999995 66678899999999999985
Q ss_pred --eeecCCccccccCCCeeEeecCCCCCCcceEEEecCCCC--CchhHHHHHHHhhhc----------------------
Q psy899 231 --YDFQFYDGTFPTDIPVLSLSDTKSMLPSDCHIKLKPDPS--CSSVIRETFSAAHQY---------------------- 284 (411)
Q Consensus 231 --YdF~y~~ie~~~Dl~vliLS~gKS~lp~Dl~vpl~~~~~--~~~~~~e~i~~~~~~---------------------- 284 (411)
|| ++.++..++++|..+||| ||++|.+.+.++ .|..+++|+...|..
T Consensus 612 gryd-~~~s~~eni~Lp~~LLSR------FDLIf~l~D~~d~~~D~~lA~hI~~~~~~~h~~~~~~~~~~~~~~~~~~~~ 684 (915)
T PTZ00111 612 SRYN-KNKAVIENINISPSLFTR------FDLIYLVLDHIDQDTDQLISLSIAKDFLLPHMTGSGNDEDTYDRSNTMHVE 684 (915)
T ss_pred cccC-cccCcccccCCChHHhhh------hcEEEEecCCCChHHHHHHHHHHHHhhcccccccccccccchhcccccccc
Confidence 55 677899999999999999 999999999886 477899998765410
Q ss_pred ---------CChhhHHHHHHHHHHhhc-cCCCCChhHHHHHHHHHHHHhhcC----------------------------
Q psy899 285 ---------LKPELLNKIRTYISWIQN-RGFDIPENLTEIVQKDFVEMRKEN---------------------------- 326 (411)
Q Consensus 285 ---------~~~~~l~~lR~YLa~aR~-~~~~i~ee~~~~IqddFV~~R~~~---------------------------- 326 (411)
..+.+.+.+|+||+|||. +.|.|++|+.+.|+++||+||+.+
T Consensus 685 ~~~~~~~~~~~~i~~~lLrkYI~YAR~~~~P~Ls~eA~~~i~~~Yv~mR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 764 (915)
T PTZ00111 685 DESLRSEKDYNKNDLDMLRMYIKFSKLHCFPKLSDEAKKVITREYVKMRQGNFQTSNLDELEHAQEDDDDDLYYQSSGTR 764 (915)
T ss_pred ccccccccccCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCC
Confidence 001247899999999995 899999999999999999999731
Q ss_pred -CCCCHHHHHHHHHHHhhhccccCCcccchhhHHHHHHhhcCCCCCCHHHHHHHHHHH
Q psy899 327 -KKTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALAME 383 (411)
Q Consensus 327 -~~it~~dLh~ll~LAR~~~~~~~~~~~~~~~~~rLlalS~G~~~lt~e~W~~a~~LE 383 (411)
.+||+++|++++|||+ .+|-.+-...++.++-+.|..|=
T Consensus 765 ~i~iT~RqLEsLIRLsE------------------A~AK~rLs~~Vt~~Dv~~Ai~L~ 804 (915)
T PTZ00111 765 MIYVSSRMISSIIRISV------------------SLARMRLSTVVTPADALQAVQIV 804 (915)
T ss_pred cccccHHHHHHHHHHHH------------------HHhhhcCcCcccHHHHHHHHHHH
Confidence 1699999999999999 78888888888888888888774
No 7
>KOG0478|consensus
Probab=100.00 E-value=9.7e-42 Score=358.67 Aligned_cols=343 Identities=18% Similarity=0.155 Sum_probs=281.8
Q ss_pred cCccceeecCCC-CCCCCccccee------eecccCCCCEEEEEeEecCCccccccCCccccccccccccccc--cccc-
Q psy899 4 DMSSLDVQKQPP-CPNGYHTRLAQ------WRHRVRYPVVSKFFGTWGSGCFQPCENNRVERPVMELPLKVSS--TVSL- 73 (411)
Q Consensus 4 ~~~~~~~q~~p~-~~~g~~~~~i~------~~~~~rpgd~v~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~- 73 (411)
|---+++||.|+ +|.|++|..+. ++|.++|||||.||||++........+...-+.+|..|+++-+ ....
T Consensus 309 dkQviklqEspd~~p~g~tPhtv~v~~~~dLVD~v~pGDrv~VTGi~ra~p~r~np~~r~vkSvyktyldvvh~rk~s~~ 388 (804)
T KOG0478|consen 309 DKQVIKLQESPDDMPEGSTPHTVSVVLHNDLVDKVRPGDRVEVTGILRATPVRVNPRMRMVKSVYKTYLDVVHIRKASMK 388 (804)
T ss_pred ccceeeeeeccccCcCCCCCceEEEEEehhhhhccCCCCeEEEEEEEEeEEeccCcchhhHHHHHHHHhHhhhhhhhhhh
Confidence 344589999997 99999999996 9999999999999999986643333222222245888885511 1111
Q ss_pred -----------CCCChHHH---------HHHHHHHHHHHHhhhcCcHHHHHHHHHHHhcceeee--cCCceeeeceEEEE
Q psy899 74 -----------KDISSEEI---------ASTRKDLKLLLTQLLMGDDVAADYLICYLLSRVYCR--DEVGFALGKFSLNI 131 (411)
Q Consensus 74 -----------~~is~~~~---------~~iR~~Li~~La~~l~GD~laAEyLLL~L~S~V~~r--~d~~~~lG~~sLnL 131 (411)
.-++.++. .++|+.|..+|||.++|.+++|..+||+|||+.... ..| .-+|+++++|
T Consensus 389 rl~~~d~~d~~~~~~~~~~e~i~elskrpdiy~lLa~SiAPsIye~edvKkglLLqLfGGt~k~~~~~~-~~R~~INILL 467 (804)
T KOG0478|consen 389 RLEGSDERDVDEVRRIEDLEKIQELSKRPDIYELLARSIAPSIYELEDVKKGLLLQLFGGTRKEDEKSG-RFRGDINILL 467 (804)
T ss_pred hccccccccccccccHHHHHHHHHHhcCccHHHHHHHhhchhhhcccchhhhHHHHHhcCCcccccccc-cccccceEEE
Confidence 11222333 378999999999999999999999999999998864 333 7899999999
Q ss_pred eecCCCCccchhHHHHHHHHHHhccceEEeeccccccccCCcceeecCCC--CcccccceeeeCCcEEEEecCCCCCCcc
Q psy899 132 FHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDYNT--NRLKSGLLQLSSSTYLILDEIHLQPGQL 209 (411)
Q Consensus 132 ~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt~~~LN~~~l~P~kD~~~--~~L~aG~LQLa~gT~lvIDEt~L~eG~L 209 (411)
+| +|+++ |+||++++.+|+||++|+++...+--+++..-.||.++ +-|++|+|+|+|||++||||+
T Consensus 468 ~G--DPGts---KSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEF------- 535 (804)
T KOG0478|consen 468 VG--DPGTS---KSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEF------- 535 (804)
T ss_pred ec--CCCcC---HHHHHHHHHHhCCcceeecCCccchhcceeeEEecCccceeeeecCcEEEcCCceEEchhh-------
Confidence 99 99999 99999999999999999999777777777777887654 789999999999999999999
Q ss_pred ccccchHHHHHHHHHHcCccc--------------------------eeecCCccccccCCCeeEeecCCCCCCcceEEE
Q psy899 210 NNTGCLNVKALSSVVNNQRMS--------------------------YDFQFYDGTFPTDIPVLSLSDTKSMLPSDCHIK 263 (411)
Q Consensus 210 ~~~Gv~N~~AL~~li~~Q~v~--------------------------YdF~y~~ie~~~Dl~vliLS~gKS~lp~Dl~vp 263 (411)
|||..--++-||++||||+|+ |+ |..++-.|||+|..+||+ ||+++-
T Consensus 536 DKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skyn-p~k~i~eNI~LpptLLSR------FDLIyl 608 (804)
T KOG0478|consen 536 DKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYN-PNKSIIENINLPPTLLSR------FDLIFL 608 (804)
T ss_pred hhhhHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCC-CCCchhhccCCChhhhhh------hcEEEE
Confidence 588788999999999999999 66 666899999999999999 999999
Q ss_pred ecCCCCC--chhHHHHHHHhhhcC----Chh--hHHHHHHHHHHhhc-cCCCCChhHHHHHHHHHHHHhhcCC-----CC
Q psy899 264 LKPDPSC--SSVIRETFSAAHQYL----KPE--LLNKIRTYISWIQN-RGFDIPENLTEIVQKDFVEMRKENK-----KT 329 (411)
Q Consensus 264 l~~~~~~--~~~~~e~i~~~~~~~----~~~--~l~~lR~YLa~aR~-~~~~i~ee~~~~IqddFV~~R~~~~-----~i 329 (411)
+-+.++. |..++.|+.+.|..- .++ +.+.+|.|++|||. ..+.+++|+++.+-..||.||+.+. ..
T Consensus 609 llD~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~lr~yi~yArk~i~p~l~~ea~~~l~~ayvd~rk~~~~~~~ita 688 (804)
T KOG0478|consen 609 LLDKPDERSDRRLADHIVALYPETGEKQGSEAIDMNLLRDYIRYARKNIHPALSPEASQALIQAYVDMRKIGEGAGQITA 688 (804)
T ss_pred EecCcchhHHHHHHHHHHHhcccccccchhHHHhHHHHHHHHHHHhccCCccccHHHHHHHHHHhhhhhhhcccccccch
Confidence 9988874 778999998877431 122 56679999999996 7899999999999999999999763 57
Q ss_pred CHHHHHHHHHHHhhhccccCCcccchhhHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q psy899 330 DANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALAMEK 384 (411)
Q Consensus 330 t~~dLh~ll~LAR~~~~~~~~~~~~~~~~~rLlalS~G~~~lt~e~W~~a~~LE~ 384 (411)
|.++|+.++++++ .+|--.-.+.+...+-+.|+.|=+
T Consensus 689 t~rQlesLiRlsE------------------ahak~r~s~~ve~~dV~eA~~l~R 725 (804)
T KOG0478|consen 689 TPRQLESLIRLSE------------------AHAKMRLSNRVEEIDVEEAVRLLR 725 (804)
T ss_pred hHHHHHHHHHHHH------------------HHHHhhcccccchhhHHHHHHHHH
Confidence 8899999999999 677666667777777777776643
No 8
>KOG0479|consensus
Probab=100.00 E-value=6.8e-41 Score=347.09 Aligned_cols=340 Identities=19% Similarity=0.219 Sum_probs=276.8
Q ss_pred CcCccceeecCCC-CCCCCccccee------eecccCCCCEEEEEeEecCCccccccCCccccccccccccccc-----c
Q psy899 3 RDMSSLDVQKQPP-CPNGYHTRLAQ------WRHRVRYPVVSKFFGTWGSGCFQPCENNRVERPVMELPLKVSS-----T 70 (411)
Q Consensus 3 ~~~~~~~~q~~p~-~~~g~~~~~i~------~~~~~rpgd~v~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 70 (411)
+|-..+.|||-|| .|+|+-|++|+ ++|+++|||||.|+|+.+.=+... |+.....|..-+-+++ .
T Consensus 192 kDHQtitiQEmPE~APaGQLPRSVDvilddDLVD~~KPGDRV~ivG~yr~Lp~k~---~g~tsg~FRTvliaNni~~l~k 268 (818)
T KOG0479|consen 192 KDHQTITIQEMPEKAPAGQLPRSVDVILDDDLVDRVKPGDRVNIVGIYRSLPGKS---NGNTSGTFRTVLIANNIELLSK 268 (818)
T ss_pred ecccEEEeeeccccCCCCCCCcceeEEecccccccCCCCCeeEEEEEEeeccCcc---CCcccceeEEEEEeccHHhhcc
Confidence 4677899999998 99999999998 999999999999999988554422 2111122333332211 0
Q ss_pred cccCCCChHHHH---------HHHHHHHHHHHhhhcCcHHHHHHHHHHHhcceeee-cCCceeeeceEEEEeecCCCCcc
Q psy899 71 VSLKDISSEEIA---------STRKDLKLLLTQLLMGDDVAADYLICYLLSRVYCR-DEVGFALGKFSLNIFHRDLATSC 140 (411)
Q Consensus 71 ~~~~~is~~~~~---------~iR~~Li~~La~~l~GD~laAEyLLL~L~S~V~~r-~d~~~~lG~~sLnL~g~~~P~~~ 140 (411)
-+..+++.+++. ++.+.|-.+|||+|+|++-++.++||.|+|+|... ++||..+|+|++.++| +|.++
T Consensus 269 e~~~~~t~~Di~~i~klsk~kdiFdlLa~SLAPSI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvG--DPSvA 346 (818)
T KOG0479|consen 269 EAAPDFTDEDIRNIKKLSKKKDIFDLLARSLAPSIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILLVG--DPSVA 346 (818)
T ss_pred cccccCChhhHHHHHHHHhcCCHHHHHhhccCcccccHHHHHHHHHHHHhccceeccCCCceeccceeEEEec--CchHH
Confidence 113367777775 45566777889999999999999999999999985 8888999999999999 99999
Q ss_pred chhHHHHHHHHHHhccceEEeeccccccccCCcceeecCCC--CcccccceeeeCCcEEEEecCCCCCCccccccchHHH
Q psy899 141 SDYAQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDYNT--NRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVK 218 (411)
Q Consensus 141 ~~~~s~L~~~l~~L~Prs~yl~lt~~~LN~~~l~P~kD~~~--~~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~N~~ 218 (411)
+|||++|+-+.+|+..-+.+..++--+++.+-.-|-++ -|||||+++|||.|++||||++ +|.--++.
T Consensus 347 ---KSQLLRyVLntAplAI~TTGRGSSGVGLTAAVTtD~eTGERRLEAGAMVLADRGVVCIDEFD-------KMsDiDRv 416 (818)
T KOG0479|consen 347 ---KSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFD-------KMSDIDRV 416 (818)
T ss_pred ---HHHHHHHHHhcccccccccCCCCCCccceeEEeeccccchhhhhcCceEEccCceEEehhcc-------cccchhHH
Confidence 99999999999999999987555544444444555544 5999999999999999999995 77778999
Q ss_pred HHHHHHHcCccc--------------------------eeecCCccccccCCCeeEeecCCCCCCcceEEEecCCCC--C
Q psy899 219 ALSSVVNNQRMS--------------------------YDFQFYDGTFPTDIPVLSLSDTKSMLPSDCHIKLKPDPS--C 270 (411)
Q Consensus 219 AL~~li~~Q~v~--------------------------YdF~y~~ie~~~Dl~vliLS~gKS~lp~Dl~vpl~~~~~--~ 270 (411)
|||++|+||+|. || +|.+=-.++-+|=-+||+ ||+.|.+-++.+ .
T Consensus 417 AIHEVMEQqtVTIaKAGIHasLNARCSVlAAANPvyG~Yd-~~k~P~eNIgLpDSLLSR------FDLlFv~lD~~d~~~ 489 (818)
T KOG0479|consen 417 AIHEVMEQQTVTIAKAGIHASLNARCSVLAAANPVYGQYD-QSKTPMENIGLPDSLLSR------FDLLFVVLDDIDADI 489 (818)
T ss_pred HHHHHHhcceEEeEeccchhhhccceeeeeecCccccccC-CCCChhhccCCcHHHHhh------hcEEEEEeccccchH
Confidence 999999999998 56 666666889999999999 999999998885 4
Q ss_pred chhHHHHHHHhhhcCChh-------------------------------------------------hHHHHHHHHHHhh
Q psy899 271 SSVIRETFSAAHQYLKPE-------------------------------------------------LLNKIRTYISWIQ 301 (411)
Q Consensus 271 ~~~~~e~i~~~~~~~~~~-------------------------------------------------~l~~lR~YLa~aR 301 (411)
|..+++|....|.|.+|. .++-+||||.|||
T Consensus 490 D~~iSeHVLRmHrY~~pg~~dGe~~~~g~~v~~~~~~~~e~~~et~v~ek~n~llhg~~k~~~~k~lti~F~rKYIhyAk 569 (818)
T KOG0479|consen 490 DRMISEHVLRMHRYLTPGEEDGEPVPEGNGVEGLSTENMEDKKETEVFEKFNTLLHGKAKQQHEKLLTIDFMRKYIHYAK 569 (818)
T ss_pred HHHHHHHHHHHhhccCCcccCCCcccCCCcccccccccccccccchhHhhhhhhhhccccccccceeeHHHHHHHHHHHH
Confidence 788999999999652110 1234899999999
Q ss_pred c-cCCCCChhHHHHHHHHHHHHhhcCC--------CCCHHHHHHHHHHHhhhccccCCcccchhhHHHHHHhhcCCCCCC
Q psy899 302 N-RGFDIPENLTEIVQKDFVEMRKENK--------KTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELT 372 (411)
Q Consensus 302 ~-~~~~i~ee~~~~IqddFV~~R~~~~--------~it~~dLh~ll~LAR~~~~~~~~~~~~~~~~~rLlalS~G~~~lt 372 (411)
+ ..|.+++|+.++|.+.|-..|..+. +||++.|+.+|+||- .+|-..-.+.++
T Consensus 570 ~ri~P~Lt~ea~e~Ia~~Y~~LR~~d~~~d~~rt~PiTARtLETlIRLaT------------------AhAKaRlSk~V~ 631 (818)
T KOG0479|consen 570 SRIKPKLTQEAAEYIAEEYTDLRNDDSRKDQERTSPITARTLETLIRLAT------------------AHAKARLSKVVE 631 (818)
T ss_pred hhcCccccHHHHHHHHHHHhhhhccccccccccccCCcHHHHHHHHHHHH------------------HHHHhhhcceee
Confidence 8 8899999999999999999998653 899999999999999 777777778888
Q ss_pred HHHHHHHHHH
Q psy899 373 EDMWKVALAM 382 (411)
Q Consensus 373 ~e~W~~a~~L 382 (411)
+++-+.|.+|
T Consensus 632 ~~DAe~A~~L 641 (818)
T KOG0479|consen 632 KDDAEAAVNL 641 (818)
T ss_pred hhhHHHHHHH
Confidence 8888777766
No 9
>smart00350 MCM minichromosome maintenance proteins.
Probab=100.00 E-value=7.1e-39 Score=337.46 Aligned_cols=344 Identities=16% Similarity=0.165 Sum_probs=276.3
Q ss_pred cCccceeecCCC-CCCCCccccee------eecccCCCCEEEEEeEecCCccccccCCcccccccccccccccc------
Q psy899 4 DMSSLDVQKQPP-CPNGYHTRLAQ------WRHRVRYPVVSKFFGTWGSGCFQPCENNRVERPVMELPLKVSST------ 70 (411)
Q Consensus 4 ~~~~~~~q~~p~-~~~g~~~~~i~------~~~~~rpgd~v~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 70 (411)
|.-+|+|||.|+ +|+|..|++|+ ++|.++|||+|+|+||++..............+.|+.++++.+.
T Consensus 84 D~Q~I~iQE~~e~~p~G~~Prsi~v~l~~dLvd~~~PGD~V~i~Gi~~~~~~~~~~~~~~~~~~~~~~l~a~~i~~~~~~ 163 (509)
T smart00350 84 DFQKIKLQESPEEVPAGQLPRSVDVILDGDLVDKAKPGDRVEVTGIYRNIPYGFKLNTVKGLPVFATYIEANHVRKLDYK 163 (509)
T ss_pred EEEEEEEEcCcccCCCCCCCcEEEEEEcccccCcccCCCEEEEEEEEEeeccccccccCCCcceeeEEEEEeEEEEcccc
Confidence 567899999997 99999999997 88999999999999999865322210001111346777766331
Q ss_pred --ccc-----CCCChHHHH---------HHHHHHHHHHHhhhcCcHHHHHHHHHHHhcceeee-cCCceeeeceEEEEee
Q psy899 71 --VSL-----KDISSEEIA---------STRKDLKLLLTQLLMGDDVAADYLICYLLSRVYCR-DEVGFALGKFSLNIFH 133 (411)
Q Consensus 71 --~~~-----~~is~~~~~---------~iR~~Li~~La~~l~GD~laAEyLLL~L~S~V~~r-~d~~~~lG~~sLnL~g 133 (411)
+.. ..+|+++.+ ++++.|+++|+|.++|++.++.+++|.|++++... .+|+..+|++|++|.|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~si~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G 243 (509)
T smart00350 164 RSFEDCSFSVQSLSDEEEEEIRKLSKDPDIYERLSRSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLG 243 (509)
T ss_pred ccccccccccccCCHHHHHHHHHHhcCHHHHHHHHHhhCccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeC
Confidence 111 247777764 46688999999999999999999999999998654 5666888999999999
Q ss_pred cCCCCccchhHHHHHHHHHHhccceEEeeccccccccCCcceeecC--CCCcccccceeeeCCcEEEEecCCCCCCcccc
Q psy899 134 RDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDY--NTNRLKSGLLQLSSSTYLILDEIHLQPGQLNN 211 (411)
Q Consensus 134 ~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt~~~LN~~~l~P~kD~--~~~~L~aG~LQLa~gT~lvIDEt~L~eG~L~~ 211 (411)
.||++ |+++.+++..+.|++.|+++...+..+.+..+.+|. +.+.+++|+|.+|+||+++|||.+ +
T Consensus 244 --~pGtG---Ks~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~-------~ 311 (509)
T smart00350 244 --DPGTA---KSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGALVLADNGVCCIDEFD-------K 311 (509)
T ss_pred --CCChh---HHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCccEEecCCCEEEEechh-------h
Confidence 99999 999999999999999998864333222333334543 447899999999999999999995 6
Q ss_pred ccchHHHHHHHHHHcCcccee---------------------e----cCCccccccCCCeeEeecCCCCCCcceEEEecC
Q psy899 212 TGCLNVKALSSVVNNQRMSYD---------------------F----QFYDGTFPTDIPVLSLSDTKSMLPSDCHIKLKP 266 (411)
Q Consensus 212 ~Gv~N~~AL~~li~~Q~v~Yd---------------------F----~y~~ie~~~Dl~vliLS~gKS~lp~Dl~vpl~~ 266 (411)
+..+...+|+++|++|++++. + +..++..++++|..+||| ||+++.+.+
T Consensus 312 l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsR------FdLi~~~~d 385 (509)
T smart00350 312 MDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSR------FDLLFVVLD 385 (509)
T ss_pred CCHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCc------eeeEEEecC
Confidence 666889999999999997531 1 334677889999999999 999999988
Q ss_pred CCCC--chhHHHHHHHhhhcC--------C-hhhHHHHHHHHHHhhc-cCCCCChhHHHHHHHHHHHHhhcC--------
Q psy899 267 DPSC--SSVIRETFSAAHQYL--------K-PELLNKIRTYISWIQN-RGFDIPENLTEIVQKDFVEMRKEN-------- 326 (411)
Q Consensus 267 ~~~~--~~~~~e~i~~~~~~~--------~-~~~l~~lR~YLa~aR~-~~~~i~ee~~~~IqddFV~~R~~~-------- 326 (411)
.++. +..+++|+...|... . ..+.+.+|+||++||. ..|.+++++.++|.+.|+++|+.+
T Consensus 386 ~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~ 465 (509)
T smart00350 386 EVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSS 465 (509)
T ss_pred CCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccc
Confidence 7764 667888876665421 1 1268899999999997 889999999999999999999843
Q ss_pred CCCCHHHHHHHHHHHhhhccccCCcccchhhHHHHHHhhcCCCCCCHHHHHHHHHHH
Q psy899 327 KKTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALAME 383 (411)
Q Consensus 327 ~~it~~dLh~ll~LAR~~~~~~~~~~~~~~~~~rLlalS~G~~~lt~e~W~~a~~LE 383 (411)
-.+|.++|+.++++|+ .+|..+|++.++.++-+.|.+|=
T Consensus 466 ~~~t~R~l~sliRla~------------------A~A~l~~r~~V~~~Dv~~ai~l~ 504 (509)
T smart00350 466 IPITVRQLESIIRLSE------------------AHAKMRLSDVVEEADVEEAIRLL 504 (509)
T ss_pred cCcCHHHHHHHHHHHH------------------HHHHHcCCCccCHHHHHHHHHHH
Confidence 2689999999999999 89999999999999999999874
No 10
>KOG0477|consensus
Probab=100.00 E-value=5.2e-38 Score=327.54 Aligned_cols=341 Identities=14% Similarity=0.176 Sum_probs=282.3
Q ss_pred CcCccceeecCCC-CCCCCccccee------eecccCCCCEEEEEeEecCCcccc--ccCCccccccccccccccc----
Q psy899 3 RDMSSLDVQKQPP-CPNGYHTRLAQ------WRHRVRYPVVSKFFGTWGSGCFQP--CENNRVERPVMELPLKVSS---- 69 (411)
Q Consensus 3 ~~~~~~~~q~~p~-~~~g~~~~~i~------~~~~~rpgd~v~~~G~l~~~~~~~--~~~~~~~~~~~~~~~~~~~---- 69 (411)
|+..++.+||.|- +|.|-.|++.+ ++|..+|||-|.++||...- |.. .-.|+| ++|..-+.+++
T Consensus 337 rnYQritiQEspg~v~~GrlPRsk~vILl~DLvD~~kpGdEievTGIy~nn-~d~sLN~kngF--pvfatvi~ANhV~~k 413 (854)
T KOG0477|consen 337 RNYQRITIQESPGTVPAGRLPRSKEVILLADLVDSCKPGDEIEVTGIYTNN-FDGSLNTKNGF--PVFATVIEANHVVKK 413 (854)
T ss_pred cccceeeeccCCCcCCCCccccchhheehhhhhhhcCCCcceEEeeeeccc-ccccccccCCc--cccceeheehhhhhh
Confidence 4567899999995 99999999997 89999999999999998743 222 223332 33444443322
Q ss_pred --ccccCCCChHHHHH---------HHHHHHHHHHhhhcCcHHHHHHHHHHHhcceeeecCC-ceeeeceEEEEeecCCC
Q psy899 70 --TVSLKDISSEEIAS---------TRKDLKLLLTQLLMGDDVAADYLICYLLSRVYCRDEV-GFALGKFSLNIFHRDLA 137 (411)
Q Consensus 70 --~~~~~~is~~~~~~---------iR~~Li~~La~~l~GD~laAEyLLL~L~S~V~~r~d~-~~~lG~~sLnL~g~~~P 137 (411)
.+..-+++.++.+. |.+.++.+|+|.+||+..+|-+++|.||++|...+.+ ...+|+++++|.| +|
T Consensus 414 ~~~~~~~~ltded~k~i~~lskd~~i~~rIiaSiaPsIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~G--DP 491 (854)
T KOG0477|consen 414 DGKFDVDELTDEDFKEIWELSKDPPIKERIIASIAPSIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLG--DP 491 (854)
T ss_pred ccccchhHHhHHHHHHHHHHhcCccHHHHHHHhhCchhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEec--CC
Confidence 23344677777764 4467999999999999999999999999999987654 5888999999999 99
Q ss_pred CccchhHHHHHHHHHHhccceEEeeccccccccCCcceeecC--CCCcccccceeeeCCcEEEEecCCCCCCccccccch
Q psy899 138 TSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDY--NTNRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCL 215 (411)
Q Consensus 138 ~~~~~~~s~L~~~l~~L~Prs~yl~lt~~~LN~~~l~P~kD~--~~~~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~ 215 (411)
|++ |||+++|++.+.||++++++-.++--+++..-.||. ..|.||+|+|+|||+|+++|||+ |+|.-+
T Consensus 492 GTa---KSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~KdPvtrEWTLEaGALVLADkGvClIDEF-------DKMndq 561 (854)
T KOG0477|consen 492 GTA---KSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKDPVTREWTLEAGALVLADKGVCLIDEF-------DKMNDQ 561 (854)
T ss_pred Ccc---HHHHHHHHHhcCcceeEeccCCccccceeEEEeeCCccceeeeccCeEEEccCceEEeehh-------hhhccc
Confidence 999 999999999999999999997777777777778884 56999999999999999999999 588889
Q ss_pred HHHHHHHHHHcCccc--------------------------eeecCCccccccCCCeeEeecCCCCCCcceEEEecCCCC
Q psy899 216 NVKALSSVVNNQRMS--------------------------YDFQFYDGTFPTDIPVLSLSDTKSMLPSDCHIKLKPDPS 269 (411)
Q Consensus 216 N~~AL~~li~~Q~v~--------------------------YdF~y~~ie~~~Dl~vliLS~gKS~lp~Dl~vpl~~~~~ 269 (411)
++..||++|+||.|+ |+ +--++..++|+.=.|||+ ||+-+.+++..+
T Consensus 562 DRtSIHEAMEQQSISISKAGIVtsLqArctvIAAanPigGRY~-~s~tFaqNV~ltePIlSR------FDiLcVvkD~vd 634 (854)
T KOG0477|consen 562 DRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYN-PSLTFAQNVDLTEPILSR------FDILCVVKDTVD 634 (854)
T ss_pred ccchHHHHHHhcchhhhhhhHHHHHHhhhhhheecCCCCCccC-Cccchhhccccccchhhh------cceeeeeecccC
Confidence 999999999999999 55 556899999999999999 999999998886
Q ss_pred C--chhHHHHHHHhhhcC-------------------ChhhHHHHHHHHHHhhc-cCCCCChhHHHHHHHHHHHHhhcCC
Q psy899 270 C--SSVIRETFSAAHQYL-------------------KPELLNKIRTYISWIQN-RGFDIPENLTEIVQKDFVEMRKENK 327 (411)
Q Consensus 270 ~--~~~~~e~i~~~~~~~-------------------~~~~l~~lR~YLa~aR~-~~~~i~ee~~~~IqddFV~~R~~~~ 327 (411)
+ |..+|+.+-..|.-. .+..-+++|+||.|||. +.|.+.+--.+.|..=|+++||+..
T Consensus 635 ~~~De~lA~fVV~Sh~r~hp~~~~~~~~~e~~~~~~v~~ipq~lLrkyI~yar~~v~PkL~q~d~~K~s~vya~lRkES~ 714 (854)
T KOG0477|consen 635 PVQDEKLAKFVVGSHVRHHPSNKEEDGLEEPQMPARVEPIPQELLRKYIIYAREKVRPKLNQMDMDKISSVYADLRKESM 714 (854)
T ss_pred chhHHHHHHHHHHhHhhcCCcccccCcccccccccccccChHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhhcc
Confidence 4 666777655444211 11245689999999995 8899999888999999999999764
Q ss_pred -----CCCHHHHHHHHHHHhhhccccCCcccchhhHHHHHHhhcCCCCCCHHHHHHHHHHH
Q psy899 328 -----KTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALAME 383 (411)
Q Consensus 328 -----~it~~dLh~ll~LAR~~~~~~~~~~~~~~~~~rLlalS~G~~~lt~e~W~~a~~LE 383 (411)
+||.+-++.++++++ ..|-.+=+..++.++-..|-...
T Consensus 715 ~tGs~piTvRHieS~ir~se------------------AhArm~Lr~~V~~~d~~~AI~v~ 757 (854)
T KOG0477|consen 715 ATGSLPITVRHIESMIRMSE------------------AHARMHLREYVTEEDVDMAIRVM 757 (854)
T ss_pred ccCCchhhHHHHHHHHHHHH------------------HHHHHHHHhhccHhHHHHHHHHH
Confidence 799999999999999 78888888888888888776543
No 11
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=100.00 E-value=1.7e-37 Score=311.16 Aligned_cols=265 Identities=20% Similarity=0.191 Sum_probs=214.0
Q ss_pred HHHHHHHHHHHhhhcCcHHHHHHHHHHHhcceeee-cCCceeeeceEEEEeecCCCCccchhHHHHHHHHHHhccceEEe
Q psy899 83 STRKDLKLLLTQLLMGDDVAADYLICYLLSRVYCR-DEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYF 161 (411)
Q Consensus 83 ~iR~~Li~~La~~l~GD~laAEyLLL~L~S~V~~r-~d~~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl 161 (411)
++++.|+++|+|.++|++.++.++||+|||++... ++++..+|++|+.|+| +|+++ +++|++++.+++|+++|+
T Consensus 13 ~~~~~l~~s~aP~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvG--dpg~g---KS~ll~~~~~~~pr~v~~ 87 (331)
T PF00493_consen 13 NIFDRLANSIAPSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVG--DPGTG---KSQLLKYVAKLAPRSVYT 87 (331)
T ss_dssp THHHCCHHHCSSTTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEEC--SCHHC---HHHHHHCCCCT-SSEEEE
T ss_pred cHHHHHHHHhCCcCcCcHHHHHHHHHHHHhccccccccccccccccceeecc--chhhh---HHHHHHHHHhhCCceEEE
Confidence 67899999999999999999999999999999874 5666899999999999 99999 999999999999999999
Q ss_pred eccccccccCCcceeec--CCCCcccccceeeeCCcEEEEecCCCCCCccccccchHHHHHHHHHHcCccc---------
Q psy899 162 ELNVKSLNETTMIPRKD--YNTNRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMS--------- 230 (411)
Q Consensus 162 ~lt~~~LN~~~l~P~kD--~~~~~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~--------- 230 (411)
+++-.+-.+++....+| .+.|.|++|+|+|||||++||||.+ ++...+..+|+++|++|+|+
T Consensus 88 ~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~d-------k~~~~~~~~l~eaMEqq~isi~kagi~~~ 160 (331)
T PF00493_consen 88 SGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFD-------KMKEDDRDALHEAMEQQTISIAKAGIVTT 160 (331)
T ss_dssp ECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTT-------T--CHHHHHHHHHHHCSCEEECTSSSEEE
T ss_pred CCCCcccCCccceeccccccceeEEeCCchhcccCceeeecccc-------cccchHHHHHHHHHHcCeeccchhhhccc
Confidence 98777777777677777 3558999999999999999999994 77778999999999999999
Q ss_pred -----------------eeecCCccccccCCCeeEeecCCCCCCcceEEEecCCCC--CchhHHHHHHHhhhcCC-----
Q psy899 231 -----------------YDFQFYDGTFPTDIPVLSLSDTKSMLPSDCHIKLKPDPS--CSSVIRETFSAAHQYLK----- 286 (411)
Q Consensus 231 -----------------YdF~y~~ie~~~Dl~vliLS~gKS~lp~Dl~vpl~~~~~--~~~~~~e~i~~~~~~~~----- 286 (411)
|| ++.++..++++|..+||+ ||++|.+.+.++ .|..+++|+...|....
T Consensus 161 l~ar~svlaa~NP~~g~~~-~~~~~~~ni~l~~~LLSR------FDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~ 233 (331)
T PF00493_consen 161 LNARCSVLAAANPKFGRYD-PNKSLSENINLPPPLLSR------FDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEK 233 (331)
T ss_dssp EE---EEEEEE--TT--S--TTS-CGCCT-S-CCCHCC-------SEEECC--TTT-HHHHHHHHHHHTTT---S-----
T ss_pred ccchhhhHHHHhhhhhhcc-hhhhhHHhcccchhhHhh------cCEEEEeccccccccccccceEEEeccccccccccc
Confidence 44 667889999999999999 999999998886 36778999877764321
Q ss_pred -------hhhHHHHHHHHHHhh-ccCCCCChhHHHHHHHHHHHHhhcC------CCCCHHHHHHHHHHHhhhccccCCcc
Q psy899 287 -------PELLNKIRTYISWIQ-NRGFDIPENLTEIVQKDFVEMRKEN------KKTDANDLHTLIVLARLEHLRLRPAT 352 (411)
Q Consensus 287 -------~~~l~~lR~YLa~aR-~~~~~i~ee~~~~IqddFV~~R~~~------~~it~~dLh~ll~LAR~~~~~~~~~~ 352 (411)
.-..+.+|+||+||| ...|.+++++.++|.++||++|+.. .++|.++|+.+++||+
T Consensus 234 ~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLse---------- 303 (331)
T PF00493_consen 234 KIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSE---------- 303 (331)
T ss_dssp ---SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHH----------
T ss_pred cccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHH----------
Confidence 226778999999999 6999999999999999999999965 2799999999999999
Q ss_pred cchhhHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q psy899 353 HYQVDLIRLMSLSHGHSELTEDMWKVALAMEK 384 (411)
Q Consensus 353 ~~~~~~~rLlalS~G~~~lt~e~W~~a~~LE~ 384 (411)
.+|-.+.+++++.++-..|..|=.
T Consensus 304 --------A~AKl~lr~~V~~~Dv~~Ai~L~~ 327 (331)
T PF00493_consen 304 --------AHAKLRLRDEVTEEDVEEAIRLFE 327 (331)
T ss_dssp --------HHHHCTTSSECSHHHHHHHHHHHH
T ss_pred --------HHHHHhccCceeHHHHHHHHHHHH
Confidence 899999999999999999998743
No 12
>PF13615 Racemase_4: Putative alanine racemase
Probab=99.96 E-value=1.2e-29 Score=214.91 Aligned_cols=101 Identities=50% Similarity=0.788 Sum_probs=97.2
Q ss_pred HHHHHhhhcCcHHHHHHHHHHHhcceeeecCCceeeeceEEEEeecCCCCcc-chhHHHHHHHHHHhccceEEeeccccc
Q psy899 89 KLLLTQLLMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSC-SDYAQMLYDILKLLVCKSHYFELNVKS 167 (411)
Q Consensus 89 i~~La~~l~GD~laAEyLLL~L~S~V~~r~d~~~~lG~~sLnL~g~~~P~~~-~~~~s~L~~~l~~L~Prs~yl~lt~~~ 167 (411)
|++|+.+++||.+||||+||||||+||+|+++ .++|+|++||+| +|... +.|.++|++++++|+|+++++|+|+++
T Consensus 1 l~~L~~~L~gD~LAAEylLlhLlS~v~~r~~~-~~lG~~sLNl~~--~~~~~~~~~~~~l~~~l~~l~P~~~~lpltl~~ 77 (102)
T PF13615_consen 1 LDYLTQALGGDELAAEYLLLHLLSRVYSRTDS-LPLGKFSLNLSN--CPKSSLSSFASQLYSVLSQLVPRSHYLPLTLEN 77 (102)
T ss_pred ChHHHHHhcCCHHHHHHHHHHHhCceEeccCC-ccccccceeeec--CCcchhhHHHHHHHHHHHHhhhheEEEeccHHH
Confidence 47899999999999999999999999999998 999999999999 88776 788999999999999999999999999
Q ss_pred cccCCcceeecCCCCcccccceeee
Q psy899 168 LNETTMIPRKDYNTNRLKSGLLQLS 192 (411)
Q Consensus 168 LN~~~l~P~kD~~~~~L~aG~LQLa 192 (411)
||+.+|+|+|||++|+|++|+||||
T Consensus 78 LN~~~~~P~kd~~~~rL~sG~LQLa 102 (102)
T PF13615_consen 78 LNSLRFVPKKDYETNRLVSGVLQLA 102 (102)
T ss_pred hccCCccccccCccCcCccccCCCC
Confidence 9999999999999999999999997
No 13
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.98 E-value=8.8e-08 Score=104.45 Aligned_cols=244 Identities=12% Similarity=0.100 Sum_probs=166.5
Q ss_pred hhcCcHHHHHHHHHHHhcceeeecCCceeeeceEEEEeecCCCCccchhHHHHHHHHHHhccceE---------------
Q psy899 95 LLMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSH--------------- 159 (411)
Q Consensus 95 ~l~GD~laAEyLLL~L~S~V~~r~d~~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~--------------- 159 (411)
.+.|.+.++.+|++.+++. + +| ++.|.| -||++ |+.+.+.+..++|.-.
T Consensus 5 ~ivGq~~~~~al~~~av~~---~------~g--~vli~G--~~Gtg---Ks~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 5 AIVGQEDLKLALLLNAVDP---R------IG--GVLIRG--EKGTA---KSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred hhcChHHHHHHHHHHhhCC---C------CC--eEEEEc--CCCCc---HHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 5678999999999888765 1 22 389999 99999 9999999999997211
Q ss_pred ---------------------Eeeccc--ccccc-CCcceeecCCCCcccccceeeeCCcEEEEecCCCCCCccccccch
Q psy899 160 ---------------------YFELNV--KSLNE-TTMIPRKDYNTNRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCL 215 (411)
Q Consensus 160 ---------------------yl~lt~--~~LN~-~~l~P~kD~~~~~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~ 215 (411)
.+|..+ +.|-+ ..+.-.-..+.+.+.+|.|..|+||+|+|||.. .+..+
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~-------~l~~~ 141 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVN-------LLDDH 141 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhh-------hCCHH
Confidence 122211 11111 000000011234578999999999999999995 55557
Q ss_pred HHHHHHHHHHcCccceeecCCccccccCCCeeEeecCC-CCCC------cceEEEecCCCCCchhHHHHHHHhhhcC-Ch
Q psy899 216 NVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSDTK-SMLP------SDCHIKLKPDPSCSSVIRETFSAAHQYL-KP 287 (411)
Q Consensus 216 N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~gK-S~lp------~Dl~vpl~~~~~~~~~~~e~i~~~~~~~-~~ 287 (411)
-..+|.++|+.+++.+.-.-.+..+++++.++..+.-. ..|+ |++.|.+.+..+.+. ..+.+.....+. .+
T Consensus 142 ~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~-~~~il~~~~~~~~~~ 220 (633)
T TIGR02442 142 LVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEE-RVEIIRRRLAFDADP 220 (633)
T ss_pred HHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHH-HHHHHHHHHhhccCc
Confidence 88999999999988776555566777777666654422 2232 777787776543322 122222211110 11
Q ss_pred --------hhHHHHHHHHHHhhcc--CCCCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhccccCCcccchhh
Q psy899 288 --------ELLNKIRTYISWIQNR--GFDIPENLTEIVQKDFVEMRKENKKTDANDLHTLIVLARLEHLRLRPATHYQVD 357 (411)
Q Consensus 288 --------~~l~~lR~YLa~aR~~--~~~i~ee~~~~IqddFV~~R~~~~~it~~dLh~ll~LAR~~~~~~~~~~~~~~~ 357 (411)
.+...++++|..+|.. .+.+++++.++|.+.+++++-. +.+-...++++||
T Consensus 221 ~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~----s~Ra~i~~~r~Ar--------------- 281 (633)
T TIGR02442 221 EAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVD----GHRADIVMARAAR--------------- 281 (633)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCC----CccHHHHHHHHHH---------------
Confidence 1234678899999863 4789999999999999988632 3577778888888
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHH
Q psy899 358 LIRLMSLSHGHSELTEDMWKVALAMEK 384 (411)
Q Consensus 358 ~~rLlalS~G~~~lt~e~W~~a~~LE~ 384 (411)
.+|.-.|++.++.++.+.|..|=-
T Consensus 282 ---a~AaL~gr~~V~~~Dv~~A~~lvL 305 (633)
T TIGR02442 282 ---ALAALDGRRRVTAEDVREAAELVL 305 (633)
T ss_pred ---HHHHHcCCCcCCHHHHHHHHHHHh
Confidence 999999999999999999988754
No 14
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.86 E-value=1.7e-07 Score=101.41 Aligned_cols=238 Identities=15% Similarity=0.063 Sum_probs=163.0
Q ss_pred HHHHHHHHHHhcceeeecCCceeeeceEEEEeecCCCCccchhHHHHHHHHHHhccce---EEeec--cccccccCC-cc
Q psy899 101 VAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKS---HYFEL--NVKSLNETT-MI 174 (411)
Q Consensus 101 laAEyLLL~L~S~V~~r~d~~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs---~yl~l--t~~~LN~~~-l~ 174 (411)
.++.+|+|..+.- . +| +|.|.| .||++ |+.+.+.+..+.|+. +.++. |.+.|-+.. +.
T Consensus 2 ~~~~Al~l~av~p--------~-~g--~vLl~G--~~Gtg---Ks~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~ 65 (589)
T TIGR02031 2 RAKLALTLLAVDP--------S-LG--GVAIRA--RAGTG---KTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVE 65 (589)
T ss_pred hHHHHHHHhccCC--------C-cc--eEEEEc--CCCcH---HHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhh
Confidence 3566666654432 1 33 578999 99999 999999999999974 33342 322222211 00
Q ss_pred eeecCCCCcccccceeeeCCcEEEEecCCCCCCccccccchHHHHHHHHHHcCccceeecCCccccccCCCeeEeecCCC
Q psy899 175 PRKDYNTNRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSDTKS 254 (411)
Q Consensus 175 P~kD~~~~~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~gKS 254 (411)
..-..+.+.++.|.|..|+||+++|||.. ....+-..+|.++|+.+++.+.=.-.+...++++.++..+....
T Consensus 66 ~~~~~g~~~~~~G~L~~A~~GvL~lDEi~-------rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e 138 (589)
T TIGR02031 66 ESLAGGQRVTQPGLLDEAPRGVLYVDMAN-------LLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAE 138 (589)
T ss_pred hhhhcCcccCCCCCeeeCCCCcEeccchh-------hCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCcc
Confidence 00011245788999999999999999995 55568889999999999987763344567777777777666542
Q ss_pred ---CCC------cceEEEecCCCCCchhHHHHHHHhhhcC---ChhhHHHHHHHHHHhhc--cCCCCChhHHHHHHHHHH
Q psy899 255 ---MLP------SDCHIKLKPDPSCSSVIRETFSAAHQYL---KPELLNKIRTYISWIQN--RGFDIPENLTEIVQKDFV 320 (411)
Q Consensus 255 ---~lp------~Dl~vpl~~~~~~~~~~~e~i~~~~~~~---~~~~l~~lR~YLa~aR~--~~~~i~ee~~~~IqddFV 320 (411)
-|| |+++|.+...++.+.. .+.+....... ...+....+++|..||. ..+.+++++.++|.+..+
T Consensus 139 ~~g~L~~~LldRf~l~v~~~~~~~~~er-~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~ 217 (589)
T TIGR02031 139 GGGGLPDHLLDRLALHVSLEDVASQDLR-VEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAA 217 (589)
T ss_pred ccCCCCHHHHHhccCeeecCCCCCHHHH-HHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHH
Confidence 333 6777777655543221 11111111100 11246688999999986 457899999999999998
Q ss_pred HHhhcCCCCCHHHHHHHHHHHhhhccccCCcccchhhHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q psy899 321 EMRKENKKTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALAMEK 384 (411)
Q Consensus 321 ~~R~~~~~it~~dLh~ll~LAR~~~~~~~~~~~~~~~~~rLlalS~G~~~lt~e~W~~a~~LE~ 384 (411)
++.-. +.+-...+++.|| .+|+..|++.++.|+-+.|..|=-
T Consensus 218 ~~gv~----s~Ra~i~~~r~Ar------------------A~Aal~gr~~V~~~Dv~~a~~lvl 259 (589)
T TIGR02031 218 SLGIS----GHRADLFAVRAAK------------------AHAALHGRTEVTEEDLKLAVELVL 259 (589)
T ss_pred HcCCC----CccHHHHHHHHHH------------------HHHHHhCCCCCCHHHHHHHHHHHh
Confidence 77643 2466678888888 999999999999999999988754
No 15
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.61 E-value=5.1e-06 Score=84.40 Aligned_cols=242 Identities=15% Similarity=0.112 Sum_probs=158.5
Q ss_pred hhcCcHHHHHHHHHHHhcceeeecCCceeeeceEEEEeecCCCCccchhHHHHHHHHHHhccceEEe-------------
Q psy899 95 LLMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYF------------- 161 (411)
Q Consensus 95 ~l~GD~laAEyLLL~L~S~V~~r~d~~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl------------- 161 (411)
.+-|.+.++.+|++.+++. + +| ++.|.| .||++ |+.|.+.+..+.|.....
T Consensus 5 ~ivgq~~~~~al~~~~~~~------~---~g--~vli~G--~~G~g---Kttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 5 AIVGQDEMKLALLLNVIDP------K---IG--GVMVMG--DRGTG---KSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred ccccHHHHHHHHHHHhcCC------C---CC--eEEEEc--CCCCC---HHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 4679999999999999974 1 23 467999 99999 999999999998752211
Q ss_pred ----------------------------ec--cccccccC-CcceeecCCCCcccccceeeeCCcEEEEecCCCCCCccc
Q psy899 162 ----------------------------EL--NVKSLNET-TMIPRKDYNTNRLKSGLLQLSSSTYLILDEIHLQPGQLN 210 (411)
Q Consensus 162 ----------------------------~l--t~~~LN~~-~l~P~kD~~~~~L~aG~LQLa~gT~lvIDEt~L~eG~L~ 210 (411)
|+ |-+.+.+. .+...-..+...++.|.|.-|+||+++|||..
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~------- 141 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVN------- 141 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChH-------
Confidence 11 11111111 01111112345679999999999999999995
Q ss_pred cccchHHHHHHHHHHcCccceeecCCccccccCCCeeEeecCC---CCCC------cceEEEecCCCCCchhHHHHHHHh
Q psy899 211 NTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSDTK---SMLP------SDCHIKLKPDPSCSSVIRETFSAA 281 (411)
Q Consensus 211 ~~Gv~N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~gK---S~lp------~Dl~vpl~~~~~~~~~~~e~i~~~ 281 (411)
.+..+-..+|.++|+.+.+.|.=.- .....+.++++++..- .-|| |.+.+.+....+.+. -.+.+...
T Consensus 142 ~L~~~~Q~~Ll~~l~~g~~~v~r~G--~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~ee-r~eIL~~~ 218 (337)
T TIGR02030 142 LLEDHLVDVLLDVAASGWNVVEREG--ISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVEL-RVEIVERR 218 (337)
T ss_pred hCCHHHHHHHHHHHHhCCeEEEECC--EEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHH-HHHHHHhh
Confidence 4555778889999998876653111 2234555666665542 1233 566665554432111 11111111
Q ss_pred hhcC-Ch--------hhHHHHHHHHHHhhc--cCCCCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhccccCC
Q psy899 282 HQYL-KP--------ELLNKIRTYISWIQN--RGFDIPENLTEIVQKDFVEMRKENKKTDANDLHTLIVLARLEHLRLRP 350 (411)
Q Consensus 282 ~~~~-~~--------~~l~~lR~YLa~aR~--~~~~i~ee~~~~IqddFV~~R~~~~~it~~dLh~ll~LAR~~~~~~~~ 350 (411)
.... .+ .+-...++-|..+|. ..+.+++++.++|.+-..+.|-. +.+---.|++.||
T Consensus 219 ~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~----s~Ra~i~l~raAr-------- 286 (337)
T TIGR02030 219 TEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVD----GLRGELTLNRAAK-------- 286 (337)
T ss_pred hhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCC----CCcHHHHHHHHHH--------
Confidence 1100 00 012355778888875 46889999999999988888732 3466777888888
Q ss_pred cccchhhHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q psy899 351 ATHYQVDLIRLMSLSHGHSELTEDMWKVALAMEK 384 (411)
Q Consensus 351 ~~~~~~~~~rLlalS~G~~~lt~e~W~~a~~LE~ 384 (411)
.+|+..|+..++.|+-+.+..+=-
T Consensus 287 ----------A~Aal~GR~~V~~dDv~~~a~~vL 310 (337)
T TIGR02030 287 ----------ALAAFEGRTEVTVDDIRRVAVLAL 310 (337)
T ss_pred ----------HHHHHcCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999888765
No 16
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.45 E-value=2.6e-05 Score=79.23 Aligned_cols=240 Identities=12% Similarity=0.114 Sum_probs=149.2
Q ss_pred hhcCcHHHHHHHHHHHhcceeeecCCceeeeceEEEEeecCCCCccchhHHHHHHHHHHhccceEEeecc----------
Q psy899 95 LLMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELN---------- 164 (411)
Q Consensus 95 ~l~GD~laAEyLLL~L~S~V~~r~d~~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt---------- 164 (411)
.+-|.+.+++.+++.++.. |--|+.|.| -||++ |+.+.+.+..++|.-......
T Consensus 9 ~i~Gq~~~~~~l~~~~~~~-----------~~~~vLl~G--~pG~g---KT~lar~la~llP~~~~~e~~~~~~~~~~~~ 72 (334)
T PRK13407 9 AIVGQEEMKQAMVLTAIDP-----------GIGGVLVFG--DRGTG---KSTAVRALAALLPLIKAVEGCPVNSARPEDC 72 (334)
T ss_pred HhCCHHHHHHHHHHHHhcc-----------CCCcEEEEc--CCCCC---HHHHHHHHHHHCCCcchhcccccccCcccCC
Confidence 3568899999999877632 123589999 99999 999999999999852222110
Q ss_pred --------------------------ccccccC-CcceeecCCCCcccccceeeeCCcEEEEecCCCCCCccccccchHH
Q psy899 165 --------------------------VKSLNET-TMIPRKDYNTNRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNV 217 (411)
Q Consensus 165 --------------------------~~~LN~~-~l~P~kD~~~~~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~N~ 217 (411)
-+.|-+. .+.+.-..+...+..|.|..|+||++++||.. ....+-.
T Consensus 73 ~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEIn-------rl~~~~q 145 (334)
T PRK13407 73 PEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVN-------LLEDHIV 145 (334)
T ss_pred cccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChH-------hCCHHHH
Confidence 0001100 00000001234588999999999999999995 4555778
Q ss_pred HHHHHHHHcCccceeecCCccccccCCCeeEeecCC---CCCC------cceEEEecCCCCCchhHHHHHHHhhhc-CCh
Q psy899 218 KALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSDTK---SMLP------SDCHIKLKPDPSCSSVIRETFSAAHQY-LKP 287 (411)
Q Consensus 218 ~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~gK---S~lp------~Dl~vpl~~~~~~~~~~~e~i~~~~~~-~~~ 287 (411)
.+|.++|+.+.+.+.-.-.+ +....++++++..- .-+| |.+.+.+.+..+....+ +.+...... ..+
T Consensus 146 ~~Lle~mee~~v~v~r~G~~--~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~-~il~~~~~~~~~~ 222 (334)
T PRK13407 146 DLLLDVAQSGENVVEREGLS--IRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRV-EVIRRRDAYDADH 222 (334)
T ss_pred HHHHHHHHcCCeEEEECCeE--EecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHH-HHHHHhhcccccc
Confidence 99999999988665422223 33334555554432 1233 66677775443322211 111111100 000
Q ss_pred h--------hHHHHHHHHHHhhc--cCCCCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhccccCCcccchhh
Q psy899 288 E--------LLNKIRTYISWIQN--RGFDIPENLTEIVQKDFVEMRKENKKTDANDLHTLIVLARLEHLRLRPATHYQVD 357 (411)
Q Consensus 288 ~--------~l~~lR~YLa~aR~--~~~~i~ee~~~~IqddFV~~R~~~~~it~~dLh~ll~LAR~~~~~~~~~~~~~~~ 357 (411)
. +....+.-|..+|. ..+.+++++.++|.+--...|..+. .+ ++. +++.||
T Consensus 223 ~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~--Ra-~i~-l~~aA~--------------- 283 (334)
T PRK13407 223 DAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGL--RG-ELT-LLRAAR--------------- 283 (334)
T ss_pred hhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCc--hH-HHH-HHHHHH---------------
Confidence 0 11233445566654 4688999999999998888886531 22 333 888888
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHH
Q psy899 358 LIRLMSLSHGHSELTEDMWKVALAM 382 (411)
Q Consensus 358 ~~rLlalS~G~~~lt~e~W~~a~~L 382 (411)
.+|+..|+..++.|+-+.+..+
T Consensus 284 ---a~A~l~Gr~~V~~~Di~~~~~~ 305 (334)
T PRK13407 284 ---ALAAFEGAEAVGRSHLRSVATM 305 (334)
T ss_pred ---HHHHHcCCCeeCHHHHHHHHHH
Confidence 9999999999999999877644
No 17
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.42 E-value=1.2e-05 Score=85.77 Aligned_cols=208 Identities=14% Similarity=0.136 Sum_probs=131.7
Q ss_pred eceEEEEeecCCCCccchhHHHHHHHHHHhccceEE---eec-cccc----------cccCCcc-eeec-------CCCC
Q psy899 125 GKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHY---FEL-NVKS----------LNETTMI-PRKD-------YNTN 182 (411)
Q Consensus 125 G~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~y---l~l-t~~~----------LN~~~l~-P~kD-------~~~~ 182 (411)
|.-++.|.| -||++ |+.|.+.+..++|.... +.. .+.+ ....+|. |.-. .+.+
T Consensus 210 ~g~~vlliG--~pGsG---KTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~ 284 (499)
T TIGR00368 210 GGHNLLLFG--PPGSG---KTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRPFRSPHHSASKPALVGGGP 284 (499)
T ss_pred CCCEEEEEe--cCCCC---HHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCCccccccccchhhhhCCcc
Confidence 445788999 99999 99999999988876421 110 1111 1111221 1100 1123
Q ss_pred cccccceeeeCCcEEEEecCCCCCCccccccchHHHHHHHHHHcCccceeecCCccccccC-------------------
Q psy899 183 RLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTD------------------- 243 (411)
Q Consensus 183 ~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~~ie~~~D------------------- 243 (411)
...+|.+.+|+||+|+|||.. +.+..-...|.++|+.+.+.+.=.-....++.+
T Consensus 285 ~~~pG~i~lA~~GvLfLDEi~-------e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~ 357 (499)
T TIGR00368 285 IPLPGEISLAHNGVLFLDELP-------EFKRSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKN 357 (499)
T ss_pred ccchhhhhccCCCeEecCChh-------hCCHHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCc
Confidence 478899999999999999995 667788899999999998754311122333333
Q ss_pred ----------------CCeeEeecCCCCCCcceEEEecCCCCCchhHHHHHHHhhhcCChhhHHHHHHHHHHhhcc----
Q psy899 244 ----------------IPVLSLSDTKSMLPSDCHIKLKPDPSCSSVIRETFSAAHQYLKPELLNKIRTYISWIQNR---- 303 (411)
Q Consensus 244 ----------------l~vliLS~gKS~lp~Dl~vpl~~~~~~~~~~~e~i~~~~~~~~~~~l~~lR~YLa~aR~~---- 303 (411)
++-.+|+| ||+.+.+.+.... +.... ...+.-..+|+-+..||..
T Consensus 358 ~~c~c~~~~~~~y~~~is~pllDR------~dl~~~~~~~~~~-----~l~~~----~~~e~s~~ir~rV~~Ar~~q~~R 422 (499)
T TIGR00368 358 THCRCSPQQISRYWNKLSGPFLDR------IDLSVEVPLLPPE-----KLLST----GSGESSAEVKQRVIKAREIQNIR 422 (499)
T ss_pred ccccCCHHHHHHHhhhccHhHHhh------CCEEEEEcCCCHH-----HHhcc----CCCCCHHHHHHHHHHHHHHHHHH
Confidence 44444444 9999998875421 11000 0111233344444433210
Q ss_pred ---------C-----------CCCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhccccCCcccchhhHHHHHH
Q psy899 304 ---------G-----------FDIPENLTEIVQKDFVEMRKENKKTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMS 363 (411)
Q Consensus 304 ---------~-----------~~i~ee~~~~IqddFV~~R~~~~~it~~dLh~ll~LAR~~~~~~~~~~~~~~~~~rLla 363 (411)
+ ..++++..+.+++.|-.+ .+|.+..|+++++|| -+|
T Consensus 423 ~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~-----~lS~R~~~rilrvAr------------------TiA 479 (499)
T TIGR00368 423 YEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKL-----GLSSRATHRILKVAR------------------TIA 479 (499)
T ss_pred hcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhc-----CCCchHHHHHHHHHH------------------HHH
Confidence 1 234566666666655332 489999999999999 899
Q ss_pred hhcCCCCCCHHHHHHHHHH
Q psy899 364 LSHGHSELTEDMWKVALAM 382 (411)
Q Consensus 364 lS~G~~~lt~e~W~~a~~L 382 (411)
-..|.+.++.+|-..|..+
T Consensus 480 dL~g~~~i~~~hv~eA~~~ 498 (499)
T TIGR00368 480 DLKEEKNISREHLAEAIEY 498 (499)
T ss_pred hhcCCCCCCHHHHHHHHhc
Confidence 9999999999999988753
No 18
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.35 E-value=1.3e-05 Score=85.57 Aligned_cols=215 Identities=12% Similarity=0.081 Sum_probs=134.8
Q ss_pred eceEEEEeecCCCCccchhHHHHHHHHHHhccceEE---eec----ccccc---cc-CCcceeec-----------CCCC
Q psy899 125 GKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHY---FEL----NVKSL---NE-TTMIPRKD-----------YNTN 182 (411)
Q Consensus 125 G~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~y---l~l----t~~~L---N~-~~l~P~kD-----------~~~~ 182 (411)
|.-++.|+| -|+++ |+.|.+.+..++|.... +.. ++.++ +. ..-.|.+. ++.+
T Consensus 209 ~G~~llliG--~~GsG---KTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~ 283 (506)
T PRK09862 209 GGHNLLLIG--PPGTG---KTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGA 283 (506)
T ss_pred CCcEEEEEC--CCCCc---HHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCc
Confidence 345788999 99999 99999999998885421 111 11111 10 11123221 1234
Q ss_pred cccccceeeeCCcEEEEecCCCCCCccccccchHHHHHHHHHHcCccceeecCCccccccC-------------------
Q psy899 183 RLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTD------------------- 243 (411)
Q Consensus 183 ~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~~ie~~~D------------------- 243 (411)
...+|.|.+|+||++++||.. +...+-..+|.++|+.+++...=......++.|
T Consensus 284 ~~~pG~l~~A~gGvLfLDEi~-------e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~ 356 (506)
T PRK09862 284 IPGPGEISLAHNGVLFLDELP-------EFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNH 356 (506)
T ss_pred eehhhHhhhccCCEEecCCch-------hCCHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCC
Confidence 588999999999999999984 566688999999999999853211112222222
Q ss_pred --------------CCeeEeecCCCCCCcceEEEecCCCCCc--------hhHHHHHHHhhhcCChhhHHHHHHHHHHhh
Q psy899 244 --------------IPVLSLSDTKSMLPSDCHIKLKPDPSCS--------SVIRETFSAAHQYLKPELLNKIRTYISWIQ 301 (411)
Q Consensus 244 --------------l~vliLS~gKS~lp~Dl~vpl~~~~~~~--------~~~~e~i~~~~~~~~~~~l~~lR~YLa~aR 301 (411)
++..+|+| ||+++.+.+.+... ..-++....+. ...+...-|+=...++
T Consensus 357 c~c~~~~~~~Y~~~ls~plLDR------fdL~v~v~~~~~~~l~~~~~~~ess~~i~~rV~---~ar~~q~~r~~~~n~~ 427 (506)
T PRK09862 357 NRCTPEQTLRYLNRLSGPFLDR------FDLSLEIPLPPPGILSKTVVPGESSATVKQRVM---AARERQFKRQNKLNAW 427 (506)
T ss_pred CCcCHHHHHHHHhhCCHhHHhh------ccEEEEeCCCCHHHHhcccCCCCChHHHHHHHh---hHHHHHHHHHHHHhcc
Confidence 44455555 99999998653110 00001101110 1112222221000111
Q ss_pred ----c--cCCCCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhccccCCcccchhhHHHHHHhhcCCCCCCHHH
Q psy899 302 ----N--RGFDIPENLTEIVQKDFVEMRKENKKTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDM 375 (411)
Q Consensus 302 ----~--~~~~i~ee~~~~IqddFV~~R~~~~~it~~dLh~ll~LAR~~~~~~~~~~~~~~~~~rLlalS~G~~~lt~e~ 375 (411)
. ....+++++.+.+++.|.++. ++.+..++++++|| -+|.-.|++.++.++
T Consensus 428 l~~~~l~~~~~l~~~~~~~l~~~~~~~~-----lS~Ra~~rlLrvAR------------------TiADL~g~~~V~~~h 484 (506)
T PRK09862 428 LDSPEIRQFCKLESEDARWLEETLIHLG-----LSIRAWQRLLKVAR------------------TIADIDQSDIITRQH 484 (506)
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHH------------------HHHHHcCCCCCCHHH
Confidence 0 113577778888887776553 78999999999999 899999999999999
Q ss_pred HHHHHHHH
Q psy899 376 WKVALAME 383 (411)
Q Consensus 376 W~~a~~LE 383 (411)
-..|..+=
T Consensus 485 v~eAl~yR 492 (506)
T PRK09862 485 LQEAVSYR 492 (506)
T ss_pred HHHHHHhh
Confidence 99999873
No 19
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.33 E-value=0.00014 Score=74.46 Aligned_cols=240 Identities=14% Similarity=0.123 Sum_probs=153.5
Q ss_pred hhcCcHHHHHHHHHHHhcceeeecCCceeeeceEEEEeecCCCCccchhHHHHHHHHHHhccceEEeecccccccc----
Q psy899 95 LLMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNE---- 170 (411)
Q Consensus 95 ~l~GD~laAEyLLL~L~S~V~~r~d~~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt~~~LN~---- 170 (411)
.+-|.+.++.+|++.+++- + +| .+.|.| -+|++ |+.+.+.+..++|....++.. -.|.
T Consensus 18 ~ivGq~~~k~al~~~~~~p------~---~~--~vli~G--~~GtG---Ks~~ar~~~~~l~~~~~~~~~--pf~~~p~~ 79 (350)
T CHL00081 18 AIVGQEEMKLALILNVIDP------K---IG--GVMIMG--DRGTG---KSTTIRALVDLLPEIEVVKDD--PFNSHPSD 79 (350)
T ss_pred HHhChHHHHHHHHHhccCC------C---CC--eEEEEc--CCCCC---HHHHHHHHHHHHhhcCccCCC--CCCCCCCC
Confidence 4678899999999998873 2 34 367999 99999 999999898888875543211 0000
Q ss_pred ------------------------CCcc--e---eec-------------CCCCcccccceeeeCCcEEEEecCCCCCCc
Q psy899 171 ------------------------TTMI--P---RKD-------------YNTNRLKSGLLQLSSSTYLILDEIHLQPGQ 208 (411)
Q Consensus 171 ------------------------~~l~--P---~kD-------------~~~~~L~aG~LQLa~gT~lvIDEt~L~eG~ 208 (411)
.+|+ | ..| .+...++.|.|.-|+||+|++||..
T Consensus 80 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEIn----- 154 (350)
T CHL00081 80 PELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVN----- 154 (350)
T ss_pred hhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChH-----
Confidence 0000 0 001 1224567999999999999999995
Q ss_pred cccccchHHHHHHHHHHcCccceeecCCccccccCCCeeEeecCC---CCCC------cceEEEecCCCCCchhHHHHHH
Q psy899 209 LNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSDTK---SMLP------SDCHIKLKPDPSCSSVIRETFS 279 (411)
Q Consensus 209 L~~~Gv~N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~gK---S~lp------~Dl~vpl~~~~~~~~~~~e~i~ 279 (411)
.+..+-..+|-++|+.+++.+.=.-.+ ...+.++++++..- .-|| |.+++.+....+.+. -.+.+.
T Consensus 155 --rL~~~~Q~~LLeam~e~~~~ier~G~s--~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~-e~~il~ 229 (350)
T CHL00081 155 --LLDDHLVDILLDSAASGWNTVEREGIS--IRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPEL-RVKIVE 229 (350)
T ss_pred --hCCHHHHHHHHHHHHhCCeEEeeCCee--eecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHH-HHHHHH
Confidence 444567788999999988877522222 45555777776542 1233 566666664332222 111111
Q ss_pred HhhhcC-Chh-hHH-------HHHHHHHHhhc--cCCCCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhcccc
Q psy899 280 AAHQYL-KPE-LLN-------KIRTYISWIQN--RGFDIPENLTEIVQKDFVEMRKENKKTDANDLHTLIVLARLEHLRL 348 (411)
Q Consensus 280 ~~~~~~-~~~-~l~-------~lR~YLa~aR~--~~~~i~ee~~~~IqddFV~~R~~~~~it~~dLh~ll~LAR~~~~~~ 348 (411)
.....- .+. ..+ ..+.=|..+|. ..+.+++++.++|.+--.+.|.. +.+---.+++.||
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~----s~Ra~i~l~raAr------ 299 (350)
T CHL00081 230 QRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVD----GLRGDIVTNRAAK------ 299 (350)
T ss_pred hhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCC----CChHHHHHHHHHH------
Confidence 111000 010 011 12444555553 46888999999998888887753 3466667777777
Q ss_pred CCcccchhhHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q psy899 349 RPATHYQVDLIRLMSLSHGHSELTEDMWKVALAMEK 384 (411)
Q Consensus 349 ~~~~~~~~~~~rLlalS~G~~~lt~e~W~~a~~LE~ 384 (411)
.+|+..|++.++.|+-+.+..+=-
T Consensus 300 ------------A~Aal~GR~~V~pdDv~~~a~~vL 323 (350)
T CHL00081 300 ------------ALAAFEGRTEVTPKDIFKVITLCL 323 (350)
T ss_pred ------------HHHHHcCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999887654
No 20
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.23 E-value=0.0004 Score=73.81 Aligned_cols=240 Identities=16% Similarity=0.164 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHHhhhcCcHHHHHHHHHHHhcceeeecCCceeeeceEEEEeecCCCCccchhHHHHHHHHHHhccceE--
Q psy899 82 ASTRKDLKLLLTQLLMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSH-- 159 (411)
Q Consensus 82 ~~iR~~Li~~La~~l~GD~laAEyLLL~L~S~V~~r~d~~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~-- 159 (411)
...-+.|+..|...+.|-+.+-+.++..++++ + |+.|.| -||++ |+.|.+.+...+.+..
T Consensus 8 ~~~i~~l~~~l~~~i~gre~vI~lll~aalag------~-------hVLL~G--pPGTG---KT~LAraLa~~~~~~~~F 69 (498)
T PRK13531 8 AERISRLSSALEKGLYERSHAIRLCLLAALSG------E-------SVFLLG--PPGIA---KSLIARRLKFAFQNARAF 69 (498)
T ss_pred HHHHHHHHHHHhhhccCcHHHHHHHHHHHccC------C-------CEEEEC--CCChh---HHHHHHHHHHHhcccCcc
Confidence 34456789999999999999999999999887 3 568889 99999 9999999998876531
Q ss_pred -E--eec-cccccccC-CcceeecCCCC-cccccceeeeCCcEEEEecCCCCCCccccccchHHHHHHHHHHcCccceee
Q psy899 160 -Y--FEL-NVKSLNET-TMIPRKDYNTN-RLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDF 233 (411)
Q Consensus 160 -y--l~l-t~~~LN~~-~l~P~kD~~~~-~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF 233 (411)
+ ..+ |.+.+-+. .+...++.+.. +...|.|.-++ ++++||. +..+.+-..+|-++|+...+.-+
T Consensus 70 ~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~--lLfLDEI-------~rasp~~QsaLLeam~Er~~t~g- 139 (498)
T PRK13531 70 EYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAE--IVFLDEI-------WKAGPAILNTLLTAINERRFRNG- 139 (498)
T ss_pred eeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCcccccc--EEeeccc-------ccCCHHHHHHHHHHHHhCeEecC-
Confidence 1 111 22222221 12222222333 46778776666 9999999 47788899999999988876643
Q ss_pred cCCccccccCCCeeEeecCCCCCC------------cceEEEecCCCCCchhHHHHHHHhhh----------cCChhhHH
Q psy899 234 QFYDGTFPTDIPVLSLSDTKSMLP------------SDCHIKLKPDPSCSSVIRETFSAAHQ----------YLKPELLN 291 (411)
Q Consensus 234 ~y~~ie~~~Dl~vliLS~gKS~lp------------~Dl~vpl~~~~~~~~~~~e~i~~~~~----------~~~~~~l~ 291 (411)
.-..+++.|+++.+.. . +| |-+.+.+.+-.+.++ ..+.+..... .++++++.
T Consensus 140 ---~~~~~lp~rfiv~ATN-~-LPE~g~~leAL~DRFliri~vp~l~~~~~-e~~lL~~~~~~~~~~~~~~~vis~eel~ 213 (498)
T PRK13531 140 ---AHEEKIPMRLLVTASN-E-LPEADSSLEALYDRMLIRLWLDKVQDKAN-FRSMLTSQQDENDNPVPASLQITDEEYQ 213 (498)
T ss_pred ---CeEEeCCCcEEEEECC-C-CcccCCchHHhHhhEEEEEECCCCCchHH-HHHHHHcccccccCCCcccCCCCHHHHH
Confidence 5667888899888774 2 23 322333322222222 2222221100 13445555
Q ss_pred HHHHHHHHhhccCCCCChhHHHHHHHHHHHHhhc--CCCCCHHHHHHHHHHHhhhccccCCcccchhhHHHHHHhhcCCC
Q psy899 292 KIRTYISWIQNRGFDIPENLTEIVQKDFVEMRKE--NKKTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHS 369 (411)
Q Consensus 292 ~lR~YLa~aR~~~~~i~ee~~~~IqddFV~~R~~--~~~it~~dLh~ll~LAR~~~~~~~~~~~~~~~~~rLlalS~G~~ 369 (411)
.|++.+ ..+.+++++.++|.+=--..|+. +..++.|---.++++|+ ..|+..|++
T Consensus 214 ~lq~~v-----~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~ak------------------A~A~l~GR~ 270 (498)
T PRK13531 214 QWQKEI-----GKITLPDHVFELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQ------------------ASAFFSGRD 270 (498)
T ss_pred HHHHHh-----cceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHH------------------HHHHHCCCC
Confidence 665544 34677899998885533333322 23488898888888888 999999999
Q ss_pred CCCHHHHHH
Q psy899 370 ELTEDMWKV 378 (411)
Q Consensus 370 ~lt~e~W~~ 378 (411)
.++.++-..
T Consensus 271 ~V~p~Dv~l 279 (498)
T PRK13531 271 AIAPIDLIL 279 (498)
T ss_pred CCCHHHHHH
Confidence 999997553
No 21
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.20 E-value=4.2e-05 Score=83.35 Aligned_cols=169 Identities=15% Similarity=0.188 Sum_probs=117.7
Q ss_pred cccccceeeeCCcEEEEecCCCCCCccccccchHHHHHHHHHHcCccceeecCC---------ccccccCCCeeEeecCC
Q psy899 183 RLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFY---------DGTFPTDIPVLSLSDTK 253 (411)
Q Consensus 183 ~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~---------~ie~~~Dl~vliLS~gK 253 (411)
++++|+|..|+||+|+|||.+ .+...-...|.++|+++++... .+. +...++|+.++..+.-.
T Consensus 207 ~i~~G~L~~AngGtL~Ldei~-------~L~~~~q~~Ll~~L~~~~i~~~-g~~e~~~~~~~~~~~ip~dvrvIa~~~~~ 278 (608)
T TIGR00764 207 RVEAGAIHRAHKGVLYIDEIK-------TMPLEVQQYLLTALQDKKFPIT-GQSENSSGAMVRTEPVPCDFILVASGNLD 278 (608)
T ss_pred cCCCCceEECCCCEEEEEChH-------hCCHHHHHHHHHHHHhCcEEec-CccccccccccCCCCCccceEEEEECCHH
Confidence 578999999999999999996 3344677899999999998875 221 33456666555555421
Q ss_pred ---CCCC-----cc---eEEEecCCCCCchhHHHHHHHhhhcCChhhHHHHHHHHHH-hh-c-cCCCCChhHHHHHHHHH
Q psy899 254 ---SMLP-----SD---CHIKLKPDPSCSSVIRETFSAAHQYLKPELLNKIRTYISW-IQ-N-RGFDIPENLTEIVQKDF 319 (411)
Q Consensus 254 ---S~lp-----~D---l~vpl~~~~~~~~~~~e~i~~~~~~~~~~~l~~lR~YLa~-aR-~-~~~~i~ee~~~~IqddF 319 (411)
.+-| |+ +.+.+.+..+. +++..+.+..|++. ++ . ..+.+++++.+.|.+++
T Consensus 279 ~l~~l~~~l~~rf~~y~v~v~~~~~~~~---------------~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~ 343 (608)
T TIGR00764 279 DLEGMHPALRSRIRGYGYEVYMKDTMPD---------------TPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREA 343 (608)
T ss_pred HHhhcCHHHHHHhcCCeEEEEeeccCCC---------------CHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHH
Confidence 1111 23 33333322211 23345556667765 33 3 35689999999998876
Q ss_pred HHHhhcCC---CCCHHHHHHHHHHHhhhccccCCcccchhhHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhccccc
Q psy899 320 VEMRKENK---KTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALAMEKERKSRPRLG 393 (411)
Q Consensus 320 V~~R~~~~---~it~~dLh~ll~LAR~~~~~~~~~~~~~~~~~rLlalS~G~~~lt~e~W~~a~~LE~~R~~R~~~~ 393 (411)
..+ ..++ +++.+++..+++.|+ ..|-..|...++.++-++|++.=..|.++++..
T Consensus 344 ~R~-ag~r~~lsl~~R~L~~llR~A~------------------~iA~~~~~~~I~~ehV~~Ai~~~~~~~~~i~~~ 401 (608)
T TIGR00764 344 QRR-AGRKDHLTLRLRELGGLVRAAG------------------DIAKSSGKVYVTAEHVLKAKKLAKTLEKQLADN 401 (608)
T ss_pred HHH-HhcccccCCCHHHHHHHHHHHH------------------HHHHhcCCceecHHHHHHHHHHHHHHHHHHHHH
Confidence 543 2222 688999999999998 788888999999999999998888888777655
No 22
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.96 E-value=0.00026 Score=76.99 Aligned_cols=228 Identities=11% Similarity=0.048 Sum_probs=148.3
Q ss_pred cHHHHHHHHHHHhcceeeecCCceeeeceEEEEeecCCCCccchhHHHHHHHHHHhccc---eEEeec--cccccccCC-
Q psy899 99 DDVAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCK---SHYFEL--NVKSLNETT- 172 (411)
Q Consensus 99 D~laAEyLLL~L~S~V~~r~d~~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Pr---s~yl~l--t~~~LN~~~- 172 (411)
.+.++.+|+|..+.-+ + +|- +.|.| -+|++ ++.+...+..|+|. .+-+|. |-+.|-+.-
T Consensus 8 ~~~~~~Al~l~av~p~-----~---~gG--v~i~g--~~G~~---ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~D 72 (584)
T PRK13406 8 WADAALAAALLAVDPA-----G---LGG--VVLRA--RAGPV---RDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLD 72 (584)
T ss_pred HHHHHHHHHHhCcCcc-----c---cce--EEEEc--CCCcH---HHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCch
Confidence 4566777776555331 1 222 57778 88998 99999999999986 222332 434333321
Q ss_pred cceeecCCCCcccccceeeeCCcEEEEecCCCCCCccccccchHHHHHHHHHHcCccceeecCCccccccCCCeeEeecC
Q psy899 173 MIPRKDYNTNRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSDT 252 (411)
Q Consensus 173 l~P~kD~~~~~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~g 252 (411)
+.-.-..+.-.++.|.|-+|+||+|+|||.. ...-+-+.+|-+.|+...|...=.-.++.+|.+.-++-+-++
T Consensus 73 l~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n-------~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~ 145 (584)
T PRK13406 73 LAATLRAGRPVAQRGLLAEADGGVLVLAMAE-------RLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEG 145 (584)
T ss_pred HHhHhhcCCcCCCCCceeeccCCEEEecCcc-------cCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCC
Confidence 1111111122488999999999999999995 555588999999999999886423334444544444443222
Q ss_pred C---CCCC------cceEEEecCCCCCchhHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHHh
Q psy899 253 K---SMLP------SDCHIKLKPDPSCSSVIRETFSAAHQYLKPELLNKIRTYISWIQNRGFDIPENLTEIVQKDFVEMR 323 (411)
Q Consensus 253 K---S~lp------~Dl~vpl~~~~~~~~~~~e~i~~~~~~~~~~~l~~lR~YLa~aR~~~~~i~ee~~~~IqddFV~~R 323 (411)
. .-|| ||+.|.+......+. .. .....+++...|.-+ .+..+++++.++|-+-+..+
T Consensus 146 ~~~~~~L~~~lLDRf~l~v~v~~~~~~~~-----~~---~~~~~~~I~~AR~rl-----~~v~v~~~~l~~i~~~~~~~- 211 (584)
T PRK13406 146 AEEDERAPAALADRLAFHLDLDGLALRDA-----RE---IPIDADDIAAARARL-----PAVGPPPEAIAALCAAAAAL- 211 (584)
T ss_pred hhcccCCCHHhHhheEEEEEcCCCChHHh-----cc---cCCCHHHHHHHHHHH-----ccCCCCHHHHHHHHHHHHHh-
Confidence 2 1122 899998886653221 00 011233444455422 36889999888877555432
Q ss_pred hcCCCC-CHHHHHHHHHHHhhhccccCCcccchhhHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q psy899 324 KENKKT-DANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALAMEK 384 (411)
Q Consensus 324 ~~~~~i-t~~dLh~ll~LAR~~~~~~~~~~~~~~~~~rLlalS~G~~~lt~e~W~~a~~LE~ 384 (411)
.+ +.+-.+.++++|| .+|.-.|++.++.++-..|..+=-
T Consensus 212 ----gv~S~Ra~i~llraAR------------------a~AaL~Gr~~V~~~dv~~Aa~lvL 251 (584)
T PRK13406 212 ----GIASLRAPLLALRAAR------------------AAAALAGRTAVEEEDLALAARLVL 251 (584)
T ss_pred ----CCCCcCHHHHHHHHHH------------------HHHHHcCCCCCCHHHHHHHHHHHH
Confidence 24 7788899999999 999999999999999999988754
No 23
>CHL00181 cbbX CbbX; Provisional
Probab=97.81 E-value=0.00063 Score=67.63 Aligned_cols=222 Identities=14% Similarity=0.089 Sum_probs=124.3
Q ss_pred HHHHHHHHHhhhcCcHHHHHHH----HHHHhcceeeecCCceeeeceEEEEeecCCCCccchhHHHHHHHHHHhc-----
Q psy899 85 RKDLKLLLTQLLMGDDVAADYL----ICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLV----- 155 (411)
Q Consensus 85 R~~Li~~La~~l~GD~laAEyL----LL~L~S~V~~r~d~~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~----- 155 (411)
.+++...|.+.+.|-+.+++-+ .+..+.+...+.+...+-..+|+.|.| -||++ |+.+.+.+...+
T Consensus 14 ~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G--~pGtG---KT~lAr~la~~~~~~g~ 88 (287)
T CHL00181 14 IQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTG--SPGTG---KTTVALKMADILYKLGY 88 (287)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEEC--CCCCC---HHHHHHHHHHHHHHcCC
Confidence 3557778887888987777633 332333322222221222357899999 99999 888888776654
Q ss_pred -cceEEeeccccccccCCcceeecCCCCcccccceeeeCCcEEEEecCC-CC-CCccccccchHHHHHHHHHHcCcc--c
Q psy899 156 -CKSHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQLSSSTYLILDEIH-LQ-PGQLNNTGCLNVKALSSVVNNQRM--S 230 (411)
Q Consensus 156 -Prs~yl~lt~~~LN~~~l~P~kD~~~~~L~aG~LQLa~gT~lvIDEt~-L~-eG~L~~~Gv~N~~AL~~li~~Q~v--~ 230 (411)
+...++..+.+.|.+.. -..+..-..+.+.-+.||+|+|||.. |. .+.-+..|.+-+..|..+|+.+.- -
T Consensus 89 ~~~~~~~~v~~~~l~~~~-----~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~ 163 (287)
T CHL00181 89 IKKGHLLTVTRDDLVGQY-----IGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLV 163 (287)
T ss_pred CCCCceEEecHHHHHHHH-----hccchHHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEE
Confidence 22333334433332211 01111223466777889999999998 32 222244667777888888886431 1
Q ss_pred eeecCC--ccccccCCCeeEeecCCCCCCcceEEEecCCCCCchhHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCC
Q psy899 231 YDFQFY--DGTFPTDIPVLSLSDTKSMLPSDCHIKLKPDPSCSSVIRETFSAAHQYLKPELLNKIRTYISWIQNRGFDIP 308 (411)
Q Consensus 231 YdF~y~--~ie~~~Dl~vliLS~gKS~lp~Dl~vpl~~~~~~~~~~~e~i~~~~~~~~~~~l~~lR~YLa~aR~~~~~i~ 308 (411)
+-+-.| .++-=.+.++-+.|+ |+..|.+.+-. .++....++.|+.. ..+.++
T Consensus 164 vI~ag~~~~~~~~~~~np~L~sR------~~~~i~F~~~t-----------------~~el~~I~~~~l~~---~~~~l~ 217 (287)
T CHL00181 164 VIFAGYKDRMDKFYESNPGLSSR------IANHVDFPDYT-----------------PEELLQIAKIMLEE---QQYQLT 217 (287)
T ss_pred EEEeCCcHHHHHHHhcCHHHHHh------CCceEEcCCcC-----------------HHHHHHHHHHHHHH---hcCCCC
Confidence 111111 111111223333444 55555444332 11234455555543 357788
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q psy899 309 ENLTEIVQKDFVEMRKENKKTDANDLHTLIVLAR 342 (411)
Q Consensus 309 ee~~~~IqddFV~~R~~~~~it~~dLh~ll~LAR 342 (411)
++..+.+-+.+.+.+..+..-+++.+..++.-|.
T Consensus 218 ~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~ 251 (287)
T CHL00181 218 PEAEKALLDYIKKRMEQPLFANARSVRNALDRAR 251 (287)
T ss_pred hhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 8888888887776665554567899988876444
No 24
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=97.27 E-value=0.02 Score=59.87 Aligned_cols=251 Identities=13% Similarity=0.082 Sum_probs=150.5
Q ss_pred HHHhhhcCcHHHHHHHHHHHhcceeeecCCceeeeceEEEEeecCCCCccchhHHHHHHHHHHhccceEEeecc------
Q psy899 91 LLTQLLMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELN------ 164 (411)
Q Consensus 91 ~La~~l~GD~laAEyLLL~L~S~V~~r~d~~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt------ 164 (411)
+...++-|.+..+.+|+|.-+ .-.-.| +.|.| ..|++ |+.+.+.|..|+|--..+-..
T Consensus 14 ~pf~aivGqd~lk~aL~l~av---~P~igg--------vLI~G--~kGta---KSt~~Rala~LLp~~~~V~gc~f~cdP 77 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAV---DPQIGG--------ALIAG--EKGTA---KSTLARALADLLPEIEVVIGCPFNCDP 77 (423)
T ss_pred cchhhhcCchHHHHHHhhhhc---ccccce--------eEEec--CCCcc---HHHHHHHHHHhCCccceecCCCCCCCC
Confidence 445577899999999998732 112222 36779 99999 999999999999975532110
Q ss_pred --c--------cc---------------cccCCcceeec-------------CCCCcccccceeeeCCcEEEEecCCCCC
Q psy899 165 --V--------KS---------------LNETTMIPRKD-------------YNTNRLKSGLLQLSSSTYLILDEIHLQP 206 (411)
Q Consensus 165 --~--------~~---------------LN~~~l~P~kD-------------~~~~~L~aG~LQLa~gT~lvIDEt~L~e 206 (411)
- +. .-++++....| ++.-.++.|.|=-||+|++-|||..
T Consensus 78 ~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvn--- 154 (423)
T COG1239 78 DDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVN--- 154 (423)
T ss_pred CChhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccc---
Confidence 0 00 00111111112 2345799999999999999999996
Q ss_pred CccccccchHHHHHHHHHHc--CccceeecCCccccccCCCeeEeecCC----CCCC-----cceEEEecCCCCCchhHH
Q psy899 207 GQLNNTGCLNVKALSSVVNN--QRMSYDFQFYDGTFPTDIPVLSLSDTK----SMLP-----SDCHIKLKPDPSCSSVIR 275 (411)
Q Consensus 207 G~L~~~Gv~N~~AL~~li~~--Q~v~YdF~y~~ie~~~Dl~vliLS~gK----S~lp-----~Dl~vpl~~~~~~~~~~~ 275 (411)
-..-+=+.+|.++++. |.|.-+ .| + +.-.+.++++-..- -+-| |.+.+-+....+.+..++
T Consensus 155 ----lL~d~lvd~LLd~aaeG~n~vere-Gi-s--i~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~ 226 (423)
T COG1239 155 ----LLDDHLVDALLDVAAEGVNDVERE-GI-S--IRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVE 226 (423)
T ss_pred ----cccHHHHHHHHHHHHhCCceeeeC-ce-e--eccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHH
Confidence 2333678899999998 677765 33 3 33333344432211 1211 788887776665433221
Q ss_pred HHHHHhhhc-CChh--------hHHHHHHHHHHhhc--cCCCCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhh
Q psy899 276 ETFSAAHQY-LKPE--------LLNKIRTYISWIQN--RGFDIPENLTEIVQKDFVEMRKENKKTDANDLHTLIVLARLE 344 (411)
Q Consensus 276 e~i~~~~~~-~~~~--------~l~~lR~YLa~aR~--~~~~i~ee~~~~IqddFV~~R~~~~~it~~dLh~ll~LAR~~ 344 (411)
.+.....+ ..|+ ....+|.=+..||. ..+.+++++..+|.+-= .|-.-.. -+-=-.+.+.|+
T Consensus 227 -Ii~r~~~f~~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~--~~~~v~g--~radi~~~r~a~-- 299 (423)
T COG1239 227 -IIRRRLAFEAVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELC--ARLAVDG--HRADIVVVRAAK-- 299 (423)
T ss_pred -HHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHH--HHhccCC--CchhhHHHHHHH--
Confidence 11111111 1222 34455555555654 35778888777775532 2211111 111223444555
Q ss_pred ccccCCcccchhhHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhccc
Q psy899 345 HLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALAMEKERKSRPR 391 (411)
Q Consensus 345 ~~~~~~~~~~~~~~~rLlalS~G~~~lt~e~W~~a~~LE~~R~~R~~ 391 (411)
.+|.-+|+++++.|+...+..|.-..+.|-.
T Consensus 300 ----------------a~aa~~Gr~~v~~~Di~~a~~l~l~hR~~~~ 330 (423)
T COG1239 300 ----------------ALAALRGRTEVEEEDIREAAELALLHRRRRK 330 (423)
T ss_pred ----------------HHHHhcCceeeehhhHHHHHhhhhhhhhccc
Confidence 9999999999999999999999977655533
No 25
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.20 E-value=0.011 Score=57.45 Aligned_cols=182 Identities=14% Similarity=0.135 Sum_probs=103.5
Q ss_pred eceEEEEeecCCCCccchhHHHHHHHHHHhc------cceEEeeccccccccCCcceeecCCCCcccccceeeeCCcEEE
Q psy899 125 GKFSLNIFHRDLATSCSDYAQMLYDILKLLV------CKSHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQLSSSTYLI 198 (411)
Q Consensus 125 G~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~------Prs~yl~lt~~~LN~~~l~P~kD~~~~~L~aG~LQLa~gT~lv 198 (411)
+..|+.|.| -||++ |+.+.+.+...+ +...++.+..+.+.+.. -.++..-..+.+.-+.|++++
T Consensus 41 ~~~~vll~G--ppGtG---KTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~-----~g~~~~~~~~~~~~a~~~VL~ 110 (261)
T TIGR02881 41 QVLHMIFKG--NPGTG---KTTVARILGKLFKEMNVLSKGHLIEVERADLVGEY-----IGHTAQKTREVIKKALGGVLF 110 (261)
T ss_pred CcceEEEEc--CCCCC---HHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhh-----ccchHHHHHHHHHhccCCEEE
Confidence 346889999 99999 888777776543 44455444444443321 111122234566777899999
Q ss_pred EecCC-CCCCccccccchHHHHHHHHHHcCcccee--ecCCc--cccccCCCeeEeecCCCCCCcceEEEecCCCCCchh
Q psy899 199 LDEIH-LQPGQLNNTGCLNVKALSSVVNNQRMSYD--FQFYD--GTFPTDIPVLSLSDTKSMLPSDCHIKLKPDPSCSSV 273 (411)
Q Consensus 199 IDEt~-L~eG~L~~~Gv~N~~AL~~li~~Q~v~Yd--F~y~~--ie~~~Dl~vliLS~gKS~lp~Dl~vpl~~~~~~~~~ 273 (411)
|||.. |..|+-...|.+-+.+|-..|+...-.+- +-.++ ++.-..++.-+.|+ |+..|.+.+-.
T Consensus 111 IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sR------f~~~i~f~~~~----- 179 (261)
T TIGR02881 111 IDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSR------FPISIDFPDYT----- 179 (261)
T ss_pred EechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhc------cceEEEECCCC-----
Confidence 99998 55543333444455666666666532221 11111 11111234445555 55555553221
Q ss_pred HHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHHhh--cCCCCCHHHHHHHHHHHh
Q psy899 274 IRETFSAAHQYLKPELLNKIRTYISWIQNRGFDIPENLTEIVQKDFVEMRK--ENKKTDANDLHTLIVLAR 342 (411)
Q Consensus 274 ~~e~i~~~~~~~~~~~l~~lR~YLa~aR~~~~~i~ee~~~~IqddFV~~R~--~~~~it~~dLh~ll~LAR 342 (411)
.++..+.+++++. ...+.+++++.++|.+.+-..++ ...+-+++....++..|.
T Consensus 180 ------------~~el~~Il~~~~~---~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~ 235 (261)
T TIGR02881 180 ------------VEELMEIAERMVK---EREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAI 235 (261)
T ss_pred ------------HHHHHHHHHHHHH---HcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHH
Confidence 1123344454442 35678999999999888877663 333567888888877665
No 26
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.05 E-value=0.13 Score=51.78 Aligned_cols=248 Identities=14% Similarity=0.124 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHhhhcCcHHHHHHHHHHHhcceeeecCCceeeeceEEEEeecCCCCccchhHHHHHHHHHHhcc-ceEEe
Q psy899 83 STRKDLKLLLTQLLMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVC-KSHYF 161 (411)
Q Consensus 83 ~iR~~Li~~La~~l~GD~laAEyLLL~L~S~V~~r~d~~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~P-rs~yl 161 (411)
.....+...+.+.+.|++.++..++..+.++ + |+.|.| -||++ |+.|.+.++..+- ..+.+
T Consensus 13 ~~~~~~~~~~~~~~~g~~~~~~~~l~a~~~~------~-------~vll~G--~PG~g---KT~la~~lA~~l~~~~~~i 74 (329)
T COG0714 13 EILGKIRSELEKVVVGDEEVIELALLALLAG------G-------HVLLEG--PPGVG---KTLLARALARALGLPFVRI 74 (329)
T ss_pred hHHHHHHhhcCCeeeccHHHHHHHHHHHHcC------C-------CEEEEC--CCCcc---HHHHHHHHHHHhCCCeEEE
Confidence 3445566677777789999999999988887 3 568889 99999 8888776655543 45555
Q ss_pred ecccccccc----CC-cceeec-CCCCcccccceeeeCCcEEEEecCCCCCCccccccchHHHHHHHHHHcCccceeecC
Q psy899 162 ELNVKSLNE----TT-MIPRKD-YNTNRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQF 235 (411)
Q Consensus 162 ~lt~~~LN~----~~-l~P~kD-~~~~~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y 235 (411)
.+|-+.+-+ .. +.+.+. ....++..|.|--+-++++.+||+ |....+...+|.++|+...+.+. ..
T Consensus 75 ~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEI-------nra~p~~q~aLl~~l~e~~vtv~-~~ 146 (329)
T COG0714 75 QCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEI-------NRAPPEVQNALLEALEERQVTVP-GL 146 (329)
T ss_pred ecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEecc-------ccCCHHHHHHHHHHHhCcEEEEC-Cc
Confidence 554333322 22 222221 445678899988887799999999 57778999999999999888776 33
Q ss_pred CccccccCCCeeEee--c-----CCCCCC------cceEEEecCCCCCchhHHHHHHHhhhc-C---ChhhHHHHHH---
Q psy899 236 YDGTFPTDIPVLSLS--D-----TKSMLP------SDCHIKLKPDPSCSSVIRETFSAAHQY-L---KPELLNKIRT--- 295 (411)
Q Consensus 236 ~~ie~~~Dl~vliLS--~-----gKS~lp------~Dl~vpl~~~~~~~~~~~e~i~~~~~~-~---~~~~l~~lR~--- 295 (411)
.+ +...-|++++. . |-+=+| |.+.+.+. -++... -+..+...... . .......+-.
T Consensus 147 ~~--~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~-yp~~~~-e~~~i~~~~~~~~~~~~~~~v~~~~~~~~ 222 (329)
T COG0714 147 TT--IRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVD-YPDSEE-EERIILARVGGVDELDLESLVKPVLSDEE 222 (329)
T ss_pred CC--cCCCCCCEEEEccCccccCCCcCCCHHHHhhEEEEEecC-CCCchH-HHHHHHHhCccccccccchhhhhhhCHHH
Confidence 33 45555555443 3 433333 22333222 221111 11111111110 0 0111111111
Q ss_pred HHHHhhc-cCCCCChhHHHHHHHHHHHHhhcCC---CCCHHHHHHHHHHHhhhccccCCcccchhhHHHHHHhhcCCCCC
Q psy899 296 YISWIQN-RGFDIPENLTEIVQKDFVEMRKENK---KTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSEL 371 (411)
Q Consensus 296 YLa~aR~-~~~~i~ee~~~~IqddFV~~R~~~~---~it~~dLh~ll~LAR~~~~~~~~~~~~~~~~~rLlalS~G~~~l 371 (411)
++..... ....+++++.+++..-+-..|.... .++.+..-.++..++ .+|...|....
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~r~~~~~~~~~~------------------~~a~~~~~~~~ 284 (329)
T COG0714 223 LLRLQKEVKKVPVSDEVIDYIVTLVAALREAPDVALGASPRASLALLAALR------------------ALALLDGRDAV 284 (329)
T ss_pred HHHHHhhhccCCchHHHHHHHHHHHHhhccccchhccCCchhHHHHHHHHH------------------hhhhhcCcccc
Confidence 1111111 2577888888888777777776532 467788888888888 89999999888
Q ss_pred CHHHHHH
Q psy899 372 TEDMWKV 378 (411)
Q Consensus 372 t~e~W~~ 378 (411)
..++-+.
T Consensus 285 ~~~dv~~ 291 (329)
T COG0714 285 IPDDVKA 291 (329)
T ss_pred CHHHHHH
Confidence 8776443
No 27
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.03 E-value=0.007 Score=66.59 Aligned_cols=161 Identities=14% Similarity=0.218 Sum_probs=104.4
Q ss_pred CcccccceeeeCCcEEEEecCCCCCCccccccchHHHHHHHHHHcCccceeecC---------CccccccCCCeeEeecC
Q psy899 182 NRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQF---------YDGTFPTDIPVLSLSDT 252 (411)
Q Consensus 182 ~~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y---------~~ie~~~Dl~vliLS~g 252 (411)
..+++|+|..|+||+|+|||.+ .+...-...|.++|+.+++... .. .+-.+++|+.++..+..
T Consensus 215 ~~i~~G~L~kAnGGtL~LDei~-------~L~~~~q~~Llr~L~~~~i~i~-g~~e~~~~~~~~~~~ip~dvrvI~a~~~ 286 (637)
T PRK13765 215 DRVEAGAIHKAHKGVLFIDEIN-------TLDLESQQSLLTAMQEKKFPIT-GQSERSSGAMVRTEPVPCDFIMVAAGNL 286 (637)
T ss_pred ccCCCCceeECCCcEEEEeChH-------hCCHHHHHHHHHHHHhCCEEec-ccccccccccCCCcceeeeeEEEEecCc
Confidence 3569999999999999999996 2334567889999999988763 22 13445566665555542
Q ss_pred CCCCCcceEEEecCCCCCchhHHHHHHH--hhhcC---ChhhHHHHHHHHHHhh-c-----cCCCCChhHHHHHHHHHHH
Q psy899 253 KSMLPSDCHIKLKPDPSCSSVIRETFSA--AHQYL---KPELLNKIRTYISWIQ-N-----RGFDIPENLTEIVQKDFVE 321 (411)
Q Consensus 253 KS~lp~Dl~vpl~~~~~~~~~~~e~i~~--~~~~~---~~~~l~~lR~YLa~aR-~-----~~~~i~ee~~~~IqddFV~ 321 (411)
.++. -+ +..+.+.+.. +.-.+ .+...+.+++|+.... . ..+.+++++.+.|-+.+..
T Consensus 287 -~ll~-----~~------dpdL~~rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R 354 (637)
T PRK13765 287 -DALE-----NM------HPALRSRIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKR 354 (637)
T ss_pred -CHHH-----hh------hHHHHHHhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHH
Confidence 1100 00 1111111110 00001 2335667777777543 1 2467999999999988854
Q ss_pred HhhcCC---CCCHHHHHHHHHHHhhhccccCCcccchhhHHHHHHhhcCCCCCCHHHHHHHHH
Q psy899 322 MRKENK---KTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALA 381 (411)
Q Consensus 322 ~R~~~~---~it~~dLh~ll~LAR~~~~~~~~~~~~~~~~~rLlalS~G~~~lt~e~W~~a~~ 381 (411)
.- .++ +...+++..+++.|- -+|...|.+.++.++-.+|..
T Consensus 355 ~a-g~r~~lsl~~~~l~~l~r~a~------------------~~a~~~~~~~i~~~~v~~a~~ 398 (637)
T PRK13765 355 RA-GRKGHLTLKLRDLGGLVRVAG------------------DIARSEGAELTTAEHVLEAKK 398 (637)
T ss_pred Hh-CCccccccCHHHHHHHHHHHH------------------HHHHhhccceecHHHHHHHHH
Confidence 21 222 467899999999998 789999999999999888763
No 28
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.63 E-value=0.0082 Score=57.31 Aligned_cols=132 Identities=16% Similarity=0.117 Sum_probs=87.5
Q ss_pred hhcCcHHHHHHHHHHHhcceeeecCCceeeeceEEEEeecCCCCccchhHHHHHHHHHHhccceEEeec----ccccccc
Q psy899 95 LLMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFEL----NVKSLNE 170 (411)
Q Consensus 95 ~l~GD~laAEyLLL~L~S~V~~r~d~~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~l----t~~~LN~ 170 (411)
.+-|.+.++.+|++...++ =+|.+.| -||++ |+.+.+.+..|+|....-.. .+.+++.
T Consensus 4 dI~GQe~aKrAL~iAAaG~-------------h~lLl~G--ppGtG---KTmlA~~l~~lLP~l~~~e~le~~~i~s~~~ 65 (206)
T PF01078_consen 4 DIVGQEEAKRALEIAAAGG-------------HHLLLIG--PPGTG---KTMLARRLPSLLPPLTEEEALEVSKIYSVAG 65 (206)
T ss_dssp CSSSTHHHHHHHHHHHHCC---------------EEEES---CCCT---HHHHHHHHHHCS--CCEECCESS--S-TT--
T ss_pred hhcCcHHHHHHHHHHHcCC-------------CCeEEEC--CCCCC---HHHHHHHHHHhCCCCchHHHhhhcccccccc
Confidence 3568999999999987764 2789999 99999 99999999999998766532 1111111
Q ss_pred -------CCcceeec-----------CCCCcccccceeeeCCcEEEEecCCCCCCccccccchHHHHHHHHHHcCcccee
Q psy899 171 -------TTMIPRKD-----------YNTNRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYD 232 (411)
Q Consensus 171 -------~~l~P~kD-----------~~~~~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~Yd 232 (411)
..-.|.+. ++.-....|.+-||++|+|.+||.. +..-.-+.+|.+.|+..+|...
T Consensus 66 ~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~-------ef~~~vld~Lr~ple~g~v~i~ 138 (206)
T PF01078_consen 66 LGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELN-------EFDRSVLDALRQPLEDGEVTIS 138 (206)
T ss_dssp -S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETT-------TS-HHHHHHHHHHHHHSBEEEE
T ss_pred CCCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhh-------hcCHHHHHHHHHHHHCCeEEEE
Confidence 01122221 0112678999999999999999995 5556789999999999999877
Q ss_pred ecCCccccccCCCeeEeec
Q psy899 233 FQFYDGTFPTDIPVLSLSD 251 (411)
Q Consensus 233 F~y~~ie~~~Dl~vliLS~ 251 (411)
=...++.+|+|.-++.-..
T Consensus 139 R~~~~~~~Pa~f~lv~a~N 157 (206)
T PF01078_consen 139 RAGGSVTYPARFLLVAAMN 157 (206)
T ss_dssp ETTEEEEEB--EEEEEEE-
T ss_pred ECCceEEEecccEEEEEec
Confidence 6666777777755544444
No 29
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.44 E-value=0.057 Score=52.72 Aligned_cols=203 Identities=10% Similarity=0.064 Sum_probs=106.3
Q ss_pred eEEEEeecCCCCccchhHHHHHHHHHHhccce-EEeeccc----cccccCCcceee---------------c-CCCCccc
Q psy899 127 FSLNIFHRDLATSCSDYAQMLYDILKLLVCKS-HYFELNV----KSLNETTMIPRK---------------D-YNTNRLK 185 (411)
Q Consensus 127 ~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs-~yl~lt~----~~LN~~~l~P~k---------------D-~~~~~L~ 185 (411)
.+++|.| -||++ |+.|.+.+....-.- ..+.++. +.+=+. +.+.. + .......
T Consensus 22 ~~vLL~G--~~GtG---KT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (262)
T TIGR02640 22 YPVHLRG--PAGTG---KTTLAMHVARKRDRPVMLINGDAELTTSDLVGS-YAGYTRKKVHDQFIHNVVKLEDIVRQNWV 95 (262)
T ss_pred CeEEEEc--CCCCC---HHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhh-hcccchhhHHHHHHHHhhhhhcccceeec
Confidence 4678999 99999 999998888644222 2222221 111000 00000 0 0011334
Q ss_pred ccceee--eCCcEEEEecCCCCCCccccccchHHHHHHHHHHcCccceeecC----CccccccCCCeeEeecCCCCCCcc
Q psy899 186 SGLLQL--SSSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQF----YDGTFPTDIPVLSLSDTKSMLPSD 259 (411)
Q Consensus 186 aG~LQL--a~gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y----~~ie~~~Dl~vliLS~gKS~lp~D 259 (411)
.|.|.. .+|+.++|||.+ ....+-..+|.++|+.+.+... .. ..+..+-+..+++.|...
T Consensus 96 ~g~l~~A~~~g~~lllDEi~-------r~~~~~q~~Ll~~Le~~~~~i~-~~~~~~~~i~~~~~frvIaTsN~~------ 161 (262)
T TIGR02640 96 DNRLTLAVREGFTLVYDEFT-------RSKPETNNVLLSVFEEGVLELP-GKRGTSRYVDVHPEFRVIFTSNPV------ 161 (262)
T ss_pred CchHHHHHHcCCEEEEcchh-------hCCHHHHHHHHHHhcCCeEEcc-CCCCCCceEecCCCCEEEEeeCCc------
Confidence 677774 688999999996 4445677889999998765532 11 112334455555555511
Q ss_pred eEEEecCCCCCchhHHHHHHHhh-hcCCh-hhHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHHhhcCC--CCCHHHHH
Q psy899 260 CHIKLKPDPSCSSVIRETFSAAH-QYLKP-ELLNKIRTYISWIQNRGFDIPENLTEIVQKDFVEMRKENK--KTDANDLH 335 (411)
Q Consensus 260 l~vpl~~~~~~~~~~~e~i~~~~-~~~~~-~~l~~lR~YLa~aR~~~~~i~ee~~~~IqddFV~~R~~~~--~it~~dLh 335 (411)
..--...- .+..+... ..++ .+.+. ++...+++. +.++++..+.|-+-|-+.|..+. ..+ .-
T Consensus 162 ~~~g~~~l--~~aL~~R~-~~i~i~~P~~~~e~~Il~~~--------~~~~~~~~~~iv~~~~~~R~~~~~~~~~---~r 227 (262)
T TIGR02640 162 EYAGVHET--QDALLDRL-ITIFMDYPDIDTETAILRAK--------TDVAEDSAATIVRLVREFRASGDEITSG---LR 227 (262)
T ss_pred cccceecc--cHHHHhhc-EEEECCCCCHHHHHHHHHHh--------hCCCHHHHHHHHHHHHHHHhhCCccCCc---HH
Confidence 00000000 01111111 0000 01111 233334332 24677888888888888883322 233 23
Q ss_pred HHHHHHhhhccccCCcccchhhHHHHHHhhcCCCCCCHHHHHHHHH
Q psy899 336 TLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALA 381 (411)
Q Consensus 336 ~ll~LAR~~~~~~~~~~~~~~~~~rLlalS~G~~~lt~e~W~~a~~ 381 (411)
..+.++| .++...+....+.|+++.++.
T Consensus 228 ~~i~~~~------------------~~~~~~~~~~~~~~~~~~~~~ 255 (262)
T TIGR02640 228 ASLMIAE------------------VATQQDIPVDVDDEDFVDLCI 255 (262)
T ss_pred HHHHHHH------------------HHHHcCCCCCCCcHHHHHHHH
Confidence 3344444 777778899999999988763
No 30
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.39 E-value=0.079 Score=52.55 Aligned_cols=219 Identities=16% Similarity=0.103 Sum_probs=109.4
Q ss_pred HHHHHHHhhhcCcHHHHHHHHH-HHhccee-eec-CCceee--eceEEEEeecCCCCccchhHHHHHHHHHHhcc-----
Q psy899 87 DLKLLLTQLLMGDDVAADYLIC-YLLSRVY-CRD-EVGFAL--GKFSLNIFHRDLATSCSDYAQMLYDILKLLVC----- 156 (411)
Q Consensus 87 ~Li~~La~~l~GD~laAEyLLL-~L~S~V~-~r~-d~~~~l--G~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~P----- 156 (411)
++++-|...+.|-..+++-+-= .....+. .|. -| ... +.+++.|.| -||++ |+.+...+...+-
T Consensus 15 ~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g-~~~~~~~~~vll~G--~pGTG---KT~lA~~ia~~l~~~g~~ 88 (284)
T TIGR02880 15 EVLDQLDRELIGLKPVKTRIREIAALLLVERLRQRLG-LASAAPTLHMSFTG--NPGTG---KTTVALRMAQILHRLGYV 88 (284)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhC-CCcCCCCceEEEEc--CCCCC---HHHHHHHHHHHHHHcCCc
Confidence 3556666566777777666411 1111111 121 12 222 456899999 99999 7777655444332
Q ss_pred -ceEEeeccccccccCCcceeecCCCCcccccceeeeCCcEEEEecCC-CC-CCccccccchHHHHHHHHHHcCccce--
Q psy899 157 -KSHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQLSSSTYLILDEIH-LQ-PGQLNNTGCLNVKALSSVVNNQRMSY-- 231 (411)
Q Consensus 157 -rs~yl~lt~~~LN~~~l~P~kD~~~~~L~aG~LQLa~gT~lvIDEt~-L~-eG~L~~~Gv~N~~AL~~li~~Q~v~Y-- 231 (411)
...++..+.+.+-+.. .- .+..-..+.+.-+.||+|+|||.. |. .++-+..|.+-...|.++|+......
T Consensus 89 ~~~~~v~v~~~~l~~~~-~g----~~~~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~v 163 (284)
T TIGR02880 89 RKGHLVSVTRDDLVGQY-IG----HTAPKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVV 163 (284)
T ss_pred ccceEEEecHHHHhHhh-cc----cchHHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEE
Confidence 1223333333332211 10 111122456777889999999997 42 11112345555677777777542110
Q ss_pred ee-cCCc-cccccCCCeeEeecCCCCCCcceEEEecCCCCCchhHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCCh
Q psy899 232 DF-QFYD-GTFPTDIPVLSLSDTKSMLPSDCHIKLKPDPSCSSVIRETFSAAHQYLKPELLNKIRTYISWIQNRGFDIPE 309 (411)
Q Consensus 232 dF-~y~~-ie~~~Dl~vliLS~gKS~lp~Dl~vpl~~~~~~~~~~~e~i~~~~~~~~~~~l~~lR~YLa~aR~~~~~i~e 309 (411)
-+ .|.. ++.-..++.-+.|+ |+..|.+.+-. .++....++.|+.. ..+.+++
T Consensus 164 I~a~~~~~~~~~~~~np~L~sR------~~~~i~fp~l~-----------------~edl~~I~~~~l~~---~~~~l~~ 217 (284)
T TIGR02880 164 ILAGYKDRMDSFFESNPGFSSR------VAHHVDFPDYS-----------------EAELLVIAGLMLKE---QQYRFSA 217 (284)
T ss_pred EEeCCcHHHHHHHhhCHHHHhh------CCcEEEeCCcC-----------------HHHHHHHHHHHHHH---hccccCH
Confidence 00 0000 00000111112222 33334333221 11234456655544 3567888
Q ss_pred hHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q psy899 310 NLTEIVQKDFVEMRKENKKTDANDLHTLIVLAR 342 (411)
Q Consensus 310 e~~~~IqddFV~~R~~~~~it~~dLh~ll~LAR 342 (411)
++.+.+.+.+...|..+.+=+.+.+..++.-+.
T Consensus 218 ~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~ 250 (284)
T TIGR02880 218 EAEEAFADYIALRRTQPHFANARSIRNAIDRAR 250 (284)
T ss_pred HHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Confidence 888888775554454444678899988876555
No 31
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.035 Score=61.20 Aligned_cols=176 Identities=18% Similarity=0.186 Sum_probs=102.7
Q ss_pred CcccccceeeeCCcEEEEecCC-CCCCccccccchHHHHHHHHHHcCccceeecCCccccccCCCeeEeecCCCCCCcce
Q psy899 182 NRLKSGLLQLSSSTYLILDEIH-LQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSDTKSMLPSDC 260 (411)
Q Consensus 182 ~~L~aG~LQLa~gT~lvIDEt~-L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~gKS~lp~Dl 260 (411)
-++++|++-=||||+|+|||.. |.+. .--..|+.+...+...+.-.-.+- +..+-. +=.|+|+
T Consensus 214 ~~i~pGaVHkAngGVLiIdei~lL~~~-------~~w~~LKa~~~k~~~~~~~~~~s~------~~~v~~---e~vP~d~ 277 (647)
T COG1067 214 IRVKPGAVHKANGGVLIIDEIGLLAQP-------LQWKLLKALLDKEQPIWGSSEPSS------GAPVRP---ESVPLDL 277 (647)
T ss_pred ccccCcccccccCcEEEEEhhhhhCcH-------HHHHHHHHHHhccccccCcCcccc------CcccCC---CCcccce
Confidence 4799999999999999999997 3321 223456666666655544211111 111111 2356788
Q ss_pred EEEecCCCCC-------chhHHHHH--HHhh-h--cCChh-hHHHHHHHHHHhhc--cCCCCChhHHHHHHHHHHHHhhc
Q psy899 261 HIKLKPDPSC-------SSVIRETF--SAAH-Q--YLKPE-LLNKIRTYISWIQN--RGFDIPENLTEIVQKDFVEMRKE 325 (411)
Q Consensus 261 ~vpl~~~~~~-------~~~~~e~i--~~~~-~--~~~~~-~l~~lR~YLa~aR~--~~~~i~ee~~~~IqddFV~~R~~ 325 (411)
.+.+-..... +....+-. .+.. . ..+++ ....|.-|.....+ .-+.++.++.+.|-..= .|++
T Consensus 278 klI~~Gn~~~l~~l~~~~~~r~~g~~y~ae~~~~m~~~~~nr~k~~~~~~q~v~~d~~ip~~~~~Av~~li~~a--~R~A 355 (647)
T COG1067 278 KLILAGNREDLEDLHEPDRSRIEGFGYEAEFEDTMPITDANRSKLVQFYVQELARDGNIPHLDKDAVEELIREA--ARRA 355 (647)
T ss_pred EEEeeCCHHHHHhhcccCHHHHhhcceEEEEcCCCCCChHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH--HHhc
Confidence 7777655421 11000000 0000 0 01222 34455555555433 23666666665554322 3333
Q ss_pred CC----CCCHHHHHHHHHHHhhhccccCCcccchhhHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhccccc
Q psy899 326 NK----KTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALAMEKERKSRPRLG 393 (411)
Q Consensus 326 ~~----~it~~dLh~ll~LAR~~~~~~~~~~~~~~~~~rLlalS~G~~~lt~e~W~~a~~LE~~R~~R~~~~ 393 (411)
+. ++..++|-.+++.|. .+|-+.|..-+|.++.+.|+..-..|..+++..
T Consensus 356 g~~~~Ltl~~rdl~~lv~~A~------------------~ia~~~~~~~I~ae~Ve~a~~~~~~~e~~l~e~ 409 (647)
T COG1067 356 GDQNKLTLRLRDLGNLVREAG------------------DIAVSEGRKLITAEDVEEALQKRELREGQLAER 409 (647)
T ss_pred cccceeccCHHHHHHHHHHhh------------------HHHhcCCcccCcHHHHHHHHHhhhhHHHHHHHH
Confidence 32 678888888888888 999999999999999999999866666665544
No 32
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.06 Score=57.19 Aligned_cols=124 Identities=17% Similarity=0.095 Sum_probs=83.9
Q ss_pred hcCcHHHHHHHHHHHhcceeeecCCceeeeceEEEEeecCCCCccchhHHHHHHHHHHhccceEEe---------ecccc
Q psy899 96 LMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYF---------ELNVK 166 (411)
Q Consensus 96 l~GD~laAEyLLL~L~S~V~~r~d~~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl---------~lt~~ 166 (411)
+-|.+.|+.++-..--| -=+|.++| -||++ |+.|.+-+..|+|-...- +++..
T Consensus 181 V~GQ~~AKrAleiAAAG-------------gHnLl~~G--pPGtG---KTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~ 242 (490)
T COG0606 181 VKGQEQAKRALEIAAAG-------------GHNLLLVG--PPGTG---KTMLASRLPGLLPPLSIPEALEVSAIHSLAGD 242 (490)
T ss_pred hcCcHHHHHHHHHHHhc-------------CCcEEEec--CCCCc---hHHhhhhhcccCCCCChHHHHHHHHHhhhccc
Confidence 34677788777765444 44678999 99999 999999888888864432 12222
Q ss_pred ccccC---Ccceeec-----------CCCCcccccceeeeCCcEEEEecCCCCCCccccccchHHHHHHHHHHcCcccee
Q psy899 167 SLNET---TMIPRKD-----------YNTNRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYD 232 (411)
Q Consensus 167 ~LN~~---~l~P~kD-----------~~~~~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~Yd 232 (411)
..+.. .-.|.+. ++...-+.|-..||+||+|.+||.. +....-+.+|.+-||+.++..-
T Consensus 243 ~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH~GVLFLDElp-------ef~~~iLe~LR~PLE~g~i~Is 315 (490)
T COG0606 243 LHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLAHNGVLFLDELP-------EFKRSILEALREPLENGKIIIS 315 (490)
T ss_pred ccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeeecCCEEEeeccc-------hhhHHHHHHHhCccccCcEEEE
Confidence 22211 1222221 1235678999999999999999995 5555788888888999888865
Q ss_pred ecCCccccccCC
Q psy899 233 FQFYDGTFPTDI 244 (411)
Q Consensus 233 F~y~~ie~~~Dl 244 (411)
=-.+++.|+++.
T Consensus 316 Ra~~~v~ypa~F 327 (490)
T COG0606 316 RAGSKVTYPARF 327 (490)
T ss_pred EcCCeeEEeeee
Confidence 455556666654
No 33
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.71 E-value=0.71 Score=49.92 Aligned_cols=219 Identities=13% Similarity=0.221 Sum_probs=122.7
Q ss_pred hcCcHHHHHHHHHHHhcceeeecCCceeeeceEEEEeecCCCCccchhHHHHHHHHHHhc------cc---eEEeecccc
Q psy899 96 LMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLV------CK---SHYFELNVK 166 (411)
Q Consensus 96 l~GD~laAEyLLL~L~S~V~~r~d~~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~------Pr---s~yl~lt~~ 166 (411)
+.|.+.+.+.+.-.+++. ...|+.|+| -||++ |+.+.+++...+ |+ ..++.+...
T Consensus 67 iiGqs~~i~~l~~al~~~-----------~~~~vLi~G--e~GtG---Kt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~ 130 (531)
T TIGR02902 67 IIGQEEGIKALKAALCGP-----------NPQHVIIYG--PPGVG---KTAAARLVLEEAKKNPASPFKEGAAFVEIDAT 130 (531)
T ss_pred eeCcHHHHHHHHHHHhCC-----------CCceEEEEC--CCCCC---HHHHHHHHHHHhhhccCCCcCCCCCEEEEccc
Confidence 456666666666555433 135889999 99999 888888776542 22 122322211
Q ss_pred c-------cccCCc----ceeecC-------CCCcccccceeeeCCcEEEEecCCCCCCccccccchHHHHHHHHHHcCc
Q psy899 167 S-------LNETTM----IPRKDY-------NTNRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQR 228 (411)
Q Consensus 167 ~-------LN~~~l----~P~kD~-------~~~~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~ 228 (411)
. +....+ .|.... +......|.+..++||+++|||.+ .+...-...|-.+|+..+
T Consensus 131 ~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~-------~L~~~~q~~LL~~Le~~~ 203 (531)
T TIGR02902 131 TARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIG-------ELHPVQMNKLLKVLEDRK 203 (531)
T ss_pred cccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechh-------hCCHHHHHHHHHHHHhCe
Confidence 1 110000 011000 001245788889999999999996 444467788889999887
Q ss_pred cceeecCCc---------------cccccCCCeeEeecC-CCCCCcceEEEecCCCCCchhHHHHHHHhh-hcCChh-hH
Q psy899 229 MSYDFQFYD---------------GTFPTDIPVLSLSDT-KSMLPSDCHIKLKPDPSCSSVIRETFSAAH-QYLKPE-LL 290 (411)
Q Consensus 229 v~YdF~y~~---------------ie~~~Dl~vliLS~g-KS~lp~Dl~vpl~~~~~~~~~~~e~i~~~~-~~~~~~-~l 290 (411)
+..+=.||. ...+.|+.++..+.. ..-+|-+ +......+. ..++++ ..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~pa--------------LrsR~~~I~f~pL~~eei~ 269 (531)
T TIGR02902 204 VFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPA--------------LRSRCVEIFFRPLLDEEIK 269 (531)
T ss_pred eeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChH--------------HhhhhheeeCCCCCHHHHH
Confidence 765433332 123445544333221 0111100 000000000 012233 23
Q ss_pred HHHHHHHHHhhccCCCCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhccccCCcccchhhHHHHHHhhcCCCC
Q psy899 291 NKIRTYISWIQNRGFDIPENLTEIVQKDFVEMRKENKKTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSE 370 (411)
Q Consensus 291 ~~lR~YLa~aR~~~~~i~ee~~~~IqddFV~~R~~~~~it~~dLh~ll~LAR~~~~~~~~~~~~~~~~~rLlalS~G~~~ 370 (411)
..++.+ ++...+.+++++.+.|...- + +.+++..++..|- .+|...|+..
T Consensus 270 ~Il~~~---a~k~~i~is~~al~~I~~y~---~------n~Rel~nll~~Aa------------------~~A~~~~~~~ 319 (531)
T TIGR02902 270 EIAKNA---AEKIGINLEKHALELIVKYA---S------NGREAVNIVQLAA------------------GIALGEGRKR 319 (531)
T ss_pred HHHHHH---HHHcCCCcCHHHHHHHHHhh---h------hHHHHHHHHHHHH------------------HHHhhCCCcE
Confidence 334432 33456889999988876532 1 4588888888777 6888889999
Q ss_pred CCHHHHHHHHH
Q psy899 371 LTEDMWKVALA 381 (411)
Q Consensus 371 lt~e~W~~a~~ 381 (411)
++.++-+.+..
T Consensus 320 It~~dI~~vl~ 330 (531)
T TIGR02902 320 ILAEDIEWVAE 330 (531)
T ss_pred EcHHHHHHHhC
Confidence 99999988864
No 34
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=95.38 E-value=0.28 Score=55.51 Aligned_cols=214 Identities=15% Similarity=0.207 Sum_probs=115.4
Q ss_pred HHHHhhhcCcHHHHHHHHHHHhcceeeecCCceeeeceEEEEeecCCCCccchhHHHHHHHHHHhccceEEeeccccccc
Q psy899 90 LLLTQLLMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLN 169 (411)
Q Consensus 90 ~~La~~l~GD~laAEyLLL~L~S~V~~r~d~~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt~~~LN 169 (411)
..|...++|.+.+++.++-+|-... +.+ ...|. .+.|.| -||.+ |+.+.+.+...+.+. +..++..+..
T Consensus 318 ~~l~~~~~g~~~vK~~i~~~l~~~~--~~~--~~~g~-~i~l~G--ppG~G---KTtl~~~ia~~l~~~-~~~i~~~~~~ 386 (784)
T PRK10787 318 EILDTDHYGLERVKDRILEYLAVQS--RVN--KIKGP-ILCLVG--PPGVG---KTSLGQSIAKATGRK-YVRMALGGVR 386 (784)
T ss_pred HHhhhhccCHHHHHHHHHHHHHHHH--hcc--cCCCc-eEEEEC--CCCCC---HHHHHHHHHHHhCCC-EEEEEcCCCC
Confidence 3456678999999999984444221 111 12455 488999 99999 999999998877654 3334333322
Q ss_pred cC-Cccee-ecCCCCccccccee--e----eCCcEEEEecCC-CCCCccccccchHHHHHHHHHH-cCccceeecCCccc
Q psy899 170 ET-TMIPR-KDYNTNRLKSGLLQ--L----SSSTYLILDEIH-LQPGQLNNTGCLNVKALSSVVN-NQRMSYDFQFYDGT 239 (411)
Q Consensus 170 ~~-~l~P~-kD~~~~~L~aG~LQ--L----a~gT~lvIDEt~-L~eG~L~~~Gv~N~~AL~~li~-~Q~v~YdF~y~~ie 239 (411)
.. .+... +.|. +. .+|.+. + ..+.+++|||.+ +... ..| .=..||.+++. .|...|..+|..++
T Consensus 387 d~~~i~g~~~~~~-g~-~~G~~~~~l~~~~~~~~villDEidk~~~~---~~g-~~~~aLlevld~~~~~~~~d~~~~~~ 460 (784)
T PRK10787 387 DEAEIRGHRRTYI-GS-MPGKLIQKMAKVGVKNPLFLLDEIDKMSSD---MRG-DPASALLEVLDPEQNVAFSDHYLEVD 460 (784)
T ss_pred CHHHhccchhccC-CC-CCcHHHHHHHhcCCCCCEEEEEChhhcccc---cCC-CHHHHHHHHhccccEEEEeccccccc
Confidence 21 11111 1221 11 123221 1 246689999997 3321 011 12589999997 57788877887665
Q ss_pred cccCCCeeEeecCCCCCCcceEEEecCCCCCchhHHHHHHHhhhcCC-hhhHHHHHHHHH--Hhh-c----cCCCCChhH
Q psy899 240 FPTDIPVLSLSDTKSMLPSDCHIKLKPDPSCSSVIRETFSAAHQYLK-PELLNKIRTYIS--WIQ-N----RGFDIPENL 311 (411)
Q Consensus 240 ~~~Dl~vliLS~gKS~lp~Dl~vpl~~~~~~~~~~~e~i~~~~~~~~-~~~l~~lR~YLa--~aR-~----~~~~i~ee~ 311 (411)
++..--+.| ....|+ .+.+.- .+. + +.+ .. ..++ ++..+..++||. ..+ + ..+.+++++
T Consensus 461 ~dls~v~~i-~TaN~~-------~i~~aL-l~R-~-~ii-~~-~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~a 527 (784)
T PRK10787 461 YDLSDVMFV-ATSNSM-------NIPAPL-LDR-M-EVI-RL-SGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSA 527 (784)
T ss_pred ccCCceEEE-EcCCCC-------CCCHHH-hcc-e-eee-ec-CCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHH
Confidence 555433333 333332 010000 000 0 000 00 0122 335667777874 221 1 347789999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q psy899 312 TEIVQKDFVEMRKENKKTDANDLHTLIV 339 (411)
Q Consensus 312 ~~~IqddFV~~R~~~~~it~~dLh~ll~ 339 (411)
.+.|-+.|- +...+|.|.+.+.
T Consensus 528 i~~ii~~yt------~e~GaR~LeR~I~ 549 (784)
T PRK10787 528 IIGIIRYYT------REAGVRSLEREIS 549 (784)
T ss_pred HHHHHHhCC------cccCCcHHHHHHH
Confidence 988876552 2345677777654
No 35
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=95.17 E-value=0.68 Score=50.10 Aligned_cols=188 Identities=14% Similarity=0.166 Sum_probs=113.6
Q ss_pred eeeceEEEEeecCCCCccchhHHHHHHHHHHhccceE--EeeccccccccCC-----cceeecCCCC---cccccceeee
Q psy899 123 ALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSH--YFELNVKSLNETT-----MIPRKDYNTN---RLKSGLLQLS 192 (411)
Q Consensus 123 ~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~--yl~lt~~~LN~~~-----l~P~kD~~~~---~L~aG~LQLa 192 (411)
+-.+.++.|.| -+|++ |+.+.+.+....++.. ++.+.-..++... |--.+..-++ .-.+|.+..|
T Consensus 232 A~~~~pVLI~G--E~GTG---Ke~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A 306 (526)
T TIGR02329 232 ARSDATVLILG--ESGTG---KELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAA 306 (526)
T ss_pred hCCCCcEEEEC--CCCcC---HHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhcCCcccccccccccccccchhhc
Confidence 34567899999 99999 9999999998877643 4444333332211 1000000001 1257999999
Q ss_pred CCcEEEEecCCCCCCccccccchHHHHHHHHHHcCccceeecCCccccccCCCeeEeecCC-------CCCCcce-----
Q psy899 193 SSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSDTK-------SMLPSDC----- 260 (411)
Q Consensus 193 ~gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~gK-------S~lp~Dl----- 260 (411)
+||.++|||.+ ++...-...|-.+++.+++.-- . ..-..++|++++..|... .-|..|+
T Consensus 307 ~gGTLfLdeI~-------~Lp~~~Q~~Ll~~L~~~~~~r~-g-~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~ 377 (526)
T TIGR02329 307 HRGTLFLDEIG-------EMPLPLQTRLLRVLEEREVVRV-G-GTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLS 377 (526)
T ss_pred CCceEEecChH-------hCCHHHHHHHHHHHhcCcEEec-C-CCceeeecceEEeccCCCHHHHhhhcchhHHHHHhcC
Confidence 99999999996 5555677788889988765321 2 233577888888877621 0111121
Q ss_pred --EEEecCCCCCchhHHHHHHHhhhcCChhhHHHHHHHHHHhh-ccCCCCChhHHHHHHHHHHHHhhcCCCCCHHHHHHH
Q psy899 261 --HIKLKPDPSCSSVIRETFSAAHQYLKPELLNKIRTYISWIQ-NRGFDIPENLTEIVQKDFVEMRKENKKTDANDLHTL 337 (411)
Q Consensus 261 --~vpl~~~~~~~~~~~e~i~~~~~~~~~~~l~~lR~YLa~aR-~~~~~i~ee~~~~IqddFV~~R~~~~~it~~dLh~l 337 (411)
.+.+.|=.+ . .++-...++.||.... .....+++++.+..++-+-.+.+-+.|=+-++|...
T Consensus 378 ~~~I~lPPLRe-------R--------~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nv 442 (526)
T TIGR02329 378 ILRIALPPLRE-------R--------PGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPLQRYPWPGNVRELRNL 442 (526)
T ss_pred CcEEeCCCchh-------c--------hhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHHHhCCCCchHHHHHHH
Confidence 111111111 0 1234556777877653 334558888877766555555666667788888877
Q ss_pred HH
Q psy899 338 IV 339 (411)
Q Consensus 338 l~ 339 (411)
+.
T Consensus 443 ie 444 (526)
T TIGR02329 443 VE 444 (526)
T ss_pred HH
Confidence 65
No 36
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=94.83 E-value=0.52 Score=51.19 Aligned_cols=195 Identities=14% Similarity=0.136 Sum_probs=113.0
Q ss_pred eeeceEEEEeecCCCCccchhHHHHHHHHHHh--------ccceE--EeeccccccccCCcce-----eecCCCC---cc
Q psy899 123 ALGKFSLNIFHRDLATSCSDYAQMLYDILKLL--------VCKSH--YFELNVKSLNETTMIP-----RKDYNTN---RL 184 (411)
Q Consensus 123 ~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L--------~Prs~--yl~lt~~~LN~~~l~P-----~kD~~~~---~L 184 (411)
+..+.++.|.| -+|++ |+.+.+.+... .++.. ++.+.-..++...+-. .+..-++ .-
T Consensus 239 A~s~~pVLI~G--E~GTG---Ke~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lleseLFG~~~gaftga~~~~ 313 (538)
T PRK15424 239 ARSSAAVLIQG--ETGTG---KELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGG 313 (538)
T ss_pred hCCCCcEEEEC--CCCCC---HHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHHHhcCCccccccCccccc
Confidence 34567899999 99999 99999999887 44432 3333333332211100 0000011 13
Q ss_pred cccceeeeCCcEEEEecCCCCCCccccccchHHHHHHHHHHcCccceeecCCccccccCCCeeEeecCC-------CCCC
Q psy899 185 KSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSDTK-------SMLP 257 (411)
Q Consensus 185 ~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~gK-------S~lp 257 (411)
..|.+..|+||.++|||.+ ++...-...|-.+++.+++.-. . ..-..++|+.++..|... .-|.
T Consensus 314 ~~Gl~e~A~gGTLfLdeI~-------~Lp~~~Q~kLl~~L~e~~~~r~-G-~~~~~~~dvRiIaat~~~L~~~v~~g~Fr 384 (538)
T PRK15424 314 RAGLFEIAHGGTLFLDEIG-------EMPLPLQTRLLRVLEEKEVTRV-G-GHQPVPVDVRVISATHCDLEEDVRQGRFR 384 (538)
T ss_pred cCCchhccCCCEEEEcChH-------hCCHHHHHHHHhhhhcCeEEec-C-CCceeccceEEEEecCCCHHHHHhcccch
Confidence 4689999999999999995 5666777888889988766432 1 234567888888777621 0011
Q ss_pred cceEEEecCCCCCchhHHHHHHHhhhcCChhhHHHHHHHHHHh-hccCCCCChhHHHHHHHHHHHHhhcCCCCCHHHHHH
Q psy899 258 SDCHIKLKPDPSCSSVIRETFSAAHQYLKPELLNKIRTYISWI-QNRGFDIPENLTEIVQKDFVEMRKENKKTDANDLHT 336 (411)
Q Consensus 258 ~Dl~vpl~~~~~~~~~~~e~i~~~~~~~~~~~l~~lR~YLa~a-R~~~~~i~ee~~~~IqddFV~~R~~~~~it~~dLh~ 336 (411)
.|+-..+..-.-.-..+.+. .++-...++.||... +.....+++++.....+..=.+++-+.+=+-++|..
T Consensus 385 ~dL~yrL~~~~I~lPPLReR--------~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~a~~~L~~y~WPGNvREL~n 456 (538)
T PRK15424 385 RDLFYRLSILRLQLPPLRER--------VADILPLAESFLKQSLAALSAPFSAALRQGLQQCETLLLHYDWPGNVRELRN 456 (538)
T ss_pred HHHHHHhcCCeecCCChhhc--------hhHHHHHHHHHHHHHHHHcCCCCCHHHHHhhHHHHHHHHhCCCCchHHHHHH
Confidence 12111000000000000010 223455777888763 344556888887777665555666666778888887
Q ss_pred HHH
Q psy899 337 LIV 339 (411)
Q Consensus 337 ll~ 339 (411)
.+.
T Consensus 457 vie 459 (538)
T PRK15424 457 LME 459 (538)
T ss_pred HHH
Confidence 765
No 37
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=94.70 E-value=0.18 Score=51.02 Aligned_cols=112 Identities=14% Similarity=0.176 Sum_probs=75.6
Q ss_pred ceEEEEeecCCCCccchhHHHHHHHHHHhccce--EEeeccccccccC-----CcceeecC--CCCcccccceeeeCCcE
Q psy899 126 KFSLNIFHRDLATSCSDYAQMLYDILKLLVCKS--HYFELNVKSLNET-----TMIPRKDY--NTNRLKSGLLQLSSSTY 196 (411)
Q Consensus 126 ~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs--~yl~lt~~~LN~~-----~l~P~kD~--~~~~L~aG~LQLa~gT~ 196 (411)
+.++.|+| -+|++ |+.+.+++....++. .++.+.-..++.. .|--.+.. +...-..|.+..++||.
T Consensus 29 ~~pVlI~G--E~GtG---K~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGt 103 (326)
T PRK11608 29 DKPVLIIG--ERGTG---KELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGT 103 (326)
T ss_pred CCCEEEEC--CCCCc---HHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHccccccccCCcccccCCchhccCCCe
Confidence 56889999 99999 999999999998854 4665555544321 11111111 01122478899999999
Q ss_pred EEEecCCCCCCccccccchHHHHHHHHHHcCccceeecCCccccccCCCeeEeec
Q psy899 197 LILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSD 251 (411)
Q Consensus 197 lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~ 251 (411)
++|||.+ .+...-...|-++++.+.+.-. -..-..++|+.++..|.
T Consensus 104 L~l~~i~-------~L~~~~Q~~L~~~l~~~~~~~~--g~~~~~~~~~RiI~~s~ 149 (326)
T PRK11608 104 LFLDELA-------TAPMLVQEKLLRVIEYGELERV--GGSQPLQVNVRLVCATN 149 (326)
T ss_pred EEeCChh-------hCCHHHHHHHHHHHhcCcEEeC--CCCceeeccEEEEEeCc
Confidence 9999995 5555777888999988763321 22346677888777665
No 38
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=94.43 E-value=0.18 Score=51.09 Aligned_cols=113 Identities=15% Similarity=0.163 Sum_probs=75.2
Q ss_pred eceEEEEeecCCCCccchhHHHHHHHHHHhccce--EEeeccccccccCC-----cceeec-C-CCCcccccceeeeCCc
Q psy899 125 GKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKS--HYFELNVKSLNETT-----MIPRKD-Y-NTNRLKSGLLQLSSST 195 (411)
Q Consensus 125 G~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs--~yl~lt~~~LN~~~-----l~P~kD-~-~~~~L~aG~LQLa~gT 195 (411)
-+.++.|+| -+|++ |+.+.+++....++. -|+.+....++... |--.+. + +...-..|.+..|+||
T Consensus 21 ~~~pVLI~G--E~GtG---K~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~gG 95 (329)
T TIGR02974 21 LDRPVLIIG--ERGTG---KELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERADGG 95 (329)
T ss_pred CCCCEEEEC--CCCCh---HHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhCCCC
Confidence 356889999 99999 999999999888864 34444433333211 100110 0 1122357889999999
Q ss_pred EEEEecCCCCCCccccccchHHHHHHHHHHcCccceeecCCccccccCCCeeEeec
Q psy899 196 YLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSD 251 (411)
Q Consensus 196 ~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~ 251 (411)
.|+|||.+ .+...-...|..+++.+++.-. -..-..++|+.++..|.
T Consensus 96 tL~Ldei~-------~L~~~~Q~~Ll~~l~~~~~~~~--g~~~~~~~~~RiI~at~ 142 (329)
T TIGR02974 96 TLFLDELA-------TASLLVQEKLLRVIEYGEFERV--GGSQTLQVDVRLVCATN 142 (329)
T ss_pred EEEeCChH-------hCCHHHHHHHHHHHHcCcEEec--CCCceeccceEEEEech
Confidence 99999995 5556777888899988764321 22345677887777765
No 39
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=93.98 E-value=0.11 Score=47.63 Aligned_cols=113 Identities=18% Similarity=0.191 Sum_probs=75.9
Q ss_pred eceEEEEeecCCCCccchhHHHHHHHHHHhccce--EEeeccccccccCC-----cceeecC--CCCcccccceeeeCCc
Q psy899 125 GKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKS--HYFELNVKSLNETT-----MIPRKDY--NTNRLKSGLLQLSSST 195 (411)
Q Consensus 125 G~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs--~yl~lt~~~LN~~~-----l~P~kD~--~~~~L~aG~LQLa~gT 195 (411)
-+.|+.|.| -+|++ |+.+.+.+....+|. -++.+.-..++... |=-.+.. +...-..|.|..|+||
T Consensus 21 ~~~pVlI~G--E~GtG---K~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~G 95 (168)
T PF00158_consen 21 SDLPVLITG--ETGTG---KELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANGG 95 (168)
T ss_dssp STS-EEEEC--STTSS---HHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTS
T ss_pred CCCCEEEEc--CCCCc---HHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccce
Confidence 357899999 99999 999999999988864 46665554443321 1111111 1234567999999999
Q ss_pred EEEEecCCCCCCccccccchHHHHHHHHHHcCccceeecCCccccccCCCeeEeec
Q psy899 196 YLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSD 251 (411)
Q Consensus 196 ~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~ 251 (411)
.|+|||.+ .+...-...|-.+|+.+++.-- -..-..++|+.++..|.
T Consensus 96 tL~Ld~I~-------~L~~~~Q~~Ll~~l~~~~~~~~--g~~~~~~~~~RiI~st~ 142 (168)
T PF00158_consen 96 TLFLDEIE-------DLPPELQAKLLRVLEEGKFTRL--GSDKPVPVDVRIIASTS 142 (168)
T ss_dssp EEEEETGG-------GS-HHHHHHHHHHHHHSEEECC--TSSSEEE--EEEEEEES
T ss_pred EEeecchh-------hhHHHHHHHHHHHHhhchhccc--cccccccccceEEeecC
Confidence 99999995 6667888899999999875332 12345667777777766
No 40
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=93.63 E-value=1.4 Score=49.37 Aligned_cols=128 Identities=18% Similarity=0.195 Sum_probs=79.6
Q ss_pred HHHHHHHHhhhcCcHHHHHHHHHHHhcc-eeeecCCceeeeceEEEEeecCCCCccchhHHHHHHHHHHhccce-EEeec
Q psy899 86 KDLKLLLTQLLMGDDVAADYLICYLLSR-VYCRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKS-HYFEL 163 (411)
Q Consensus 86 ~~Li~~La~~l~GD~laAEyLLL~L~S~-V~~r~d~~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs-~yl~l 163 (411)
..+-..|...+.|.+.|.+.+.-++... .-..... .++|. +.+.| -||++ |+.|.+.+...+... ..+.|
T Consensus 446 ~~l~~~l~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~-~p~~~--~lf~G--p~GvG---KT~lA~~la~~l~~~~~~~d~ 517 (731)
T TIGR02639 446 KNLEKNLKAKIFGQDEAIDSLVSSIKRSRAGLGNPN-KPVGS--FLFTG--PTGVG---KTELAKQLAEALGVHLERFDM 517 (731)
T ss_pred HHHHHHHhcceeCcHHHHHHHHHHHHHHhcCCCCCC-CCcee--EEEEC--CCCcc---HHHHHHHHHHHhcCCeEEEeC
Confidence 3467788888999999989887665532 1111122 45554 68899 89999 888888888777432 22232
Q ss_pred ccccccc----CCcc--ee--ecCCCCcccccceeeeCCcEEEEecCCCCCCccccccchHHHHHHHHHHcCccc
Q psy899 164 NVKSLNE----TTMI--PR--KDYNTNRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMS 230 (411)
Q Consensus 164 t~~~LN~----~~l~--P~--kD~~~~~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~ 230 (411)
+ .... ..+. |. ..|+..+.-..++...+.+++++||.+ ++...-..+|-.+|+...+.
T Consensus 518 s--e~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEie-------ka~~~~~~~Ll~~ld~g~~~ 583 (731)
T TIGR02639 518 S--EYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIE-------KAHPDIYNILLQVMDYATLT 583 (731)
T ss_pred c--hhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechh-------hcCHHHHHHHHHhhccCeee
Confidence 1 1100 0111 11 112222233344555678999999995 66677888999999988875
No 41
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=93.46 E-value=0.54 Score=50.12 Aligned_cols=186 Identities=11% Similarity=0.110 Sum_probs=108.3
Q ss_pred eceEEEEeecCCCCccchhHHHHHHHHHHhccceE--Eeecccccc-----ccCCcceeecC--CCCcccccceeeeCCc
Q psy899 125 GKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSH--YFELNVKSL-----NETTMIPRKDY--NTNRLKSGLLQLSSST 195 (411)
Q Consensus 125 G~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~--yl~lt~~~L-----N~~~l~P~kD~--~~~~L~aG~LQLa~gT 195 (411)
-+.++.|+| -.|++ |.-+.++|....+|.. |+++.-..+ .+--|-..|-- +...=..|.++.|+||
T Consensus 163 s~a~VLI~G--ESGtG---KElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~~~r~G~fE~A~GG 237 (464)
T COG2204 163 SDASVLITG--ESGTG---KELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAITRRIGRFEQANGG 237 (464)
T ss_pred CCCCEEEEC--CCCCc---HHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhcccccCcCCcccccCcceeEcCCc
Confidence 467899999 99999 9999999999999865 222211111 11111111200 1234567899999999
Q ss_pred EEEEecCCCCCCccccccchHHHHHHHHHHcCccceeecCCccccccCCCeeEeecCC-------CCCCcceEEEecCCC
Q psy899 196 YLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSDTK-------SMLPSDCHIKLKPDP 268 (411)
Q Consensus 196 ~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~gK-------S~lp~Dl~vpl~~~~ 268 (411)
.|.+||+. +|..+=-.-|-.+++.+++.-- -..-.+++|+.++.-|... --|.-|+-..+..-+
T Consensus 238 TLfLDEI~-------~mpl~~Q~kLLRvLqe~~~~rv--G~~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLnV~~ 308 (464)
T COG2204 238 TLFLDEIG-------EMPLELQVKLLRVLQEREFERV--GGNKPIKVDVRIIAATNRDLEEEVAAGRFREDLYYRLNVVP 308 (464)
T ss_pred eEEeeccc-------cCCHHHHHHHHHHHHcCeeEec--CCCcccceeeEEEeecCcCHHHHHHcCCcHHHHHhhhccce
Confidence 99999996 6667777788888888865433 3355678888888777621 112223322221111
Q ss_pred CCchhHHHHHHHhhhcCChhhHHHHHHHHHHhhc----cCCCCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q psy899 269 SCSSVIRETFSAAHQYLKPELLNKIRTYISWIQN----RGFDIPENLTEIVQKDFVEMRKENKKTDANDLHTLIV 339 (411)
Q Consensus 269 ~~~~~~~e~i~~~~~~~~~~~l~~lR~YLa~aR~----~~~~i~ee~~~~IqddFV~~R~~~~~it~~dLh~ll~ 339 (411)
-.-..+.|- .++-+.+++.|+..+.. ....+++++.+.+.. -+.|=+-++|...+.
T Consensus 309 i~iPpLRER--------~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~-------y~WPGNVREL~N~ve 368 (464)
T COG2204 309 LRLPPLRER--------KEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLA-------YDWPGNVRELENVVE 368 (464)
T ss_pred ecCCccccc--------chhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh-------CCCChHHHHHHHHHH
Confidence 000000000 22345577777776531 346688877776632 233556666665543
No 42
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=93.32 E-value=4.7 Score=40.14 Aligned_cols=134 Identities=13% Similarity=0.168 Sum_probs=77.5
Q ss_pred HHHHHHhhhcCcHHHHHHHHHHHhcceeeecCCceeeeceEEEEeecCCCCccchhHHHHHHHHHHhccceE---Eeecc
Q psy899 88 LKLLLTQLLMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSH---YFELN 164 (411)
Q Consensus 88 Li~~La~~l~GD~laAEyLLL~L~S~V~~r~d~~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~---yl~lt 164 (411)
...+|...+.||....+++.-.+=... ... ....++ +-+.| -.+++ |+.+.++++.|+.... ..+.+
T Consensus 43 ~~~~L~~~~~~d~~~~~~l~~~lg~~L-~~~---~~~~~~-~~l~G--~g~nG---KStl~~~l~~l~G~~~~~~~~~~~ 112 (304)
T TIGR01613 43 WNGFLLETFGGDNELIEYLQRVIGYSL-TGN---YTEQKL-FFLYG--NGGNG---KSTFQNLLSNLLGDYATTAVASLK 112 (304)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhHHh-cCC---CCceEE-EEEEC--CCCCc---HHHHHHHHHHHhChhhccCCcchh
Confidence 445788788889877776665543332 221 123333 56678 78889 9999999999998754 11223
Q ss_pred ccccccCCcceeecCCCCcccccceeeeCCcEEEEecCCCCCCccccccchHHHHHHHHHHcCccceeecCC-ccccccC
Q psy899 165 VKSLNETTMIPRKDYNTNRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFY-DGTFPTD 243 (411)
Q Consensus 165 ~~~LN~~~l~P~kD~~~~~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~-~ie~~~D 243 (411)
+..+++.. ..+ --|...-.+++||... ....|-..|++++..-+|.....|. ++++.-.
T Consensus 113 ~~~~~~~~---------f~~----a~l~gk~l~~~~E~~~-------~~~~~~~~lK~lt~gd~i~~~~k~k~~~~~~~~ 172 (304)
T TIGR01613 113 MNEFQEHR---------FGL----ARLEGKRAVIGDEVQK-------GYRDDESTFKSLTGGDTITARFKNKDPFEFTPK 172 (304)
T ss_pred hhhccCCC---------chh----hhhcCCEEEEecCCCC-------CccccHHhhhhhhcCCeEEeecccCCcEEEEEe
Confidence 33332211 111 1234456788899852 1334668899999877887665444 2333333
Q ss_pred CCeeEeec
Q psy899 244 IPVLSLSD 251 (411)
Q Consensus 244 l~vliLS~ 251 (411)
..+++.|.
T Consensus 173 ~~~i~~tN 180 (304)
T TIGR01613 173 FTLVQSTN 180 (304)
T ss_pred eEEEEEcC
Confidence 33333333
No 43
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=93.15 E-value=0.6 Score=50.35 Aligned_cols=159 Identities=16% Similarity=0.138 Sum_probs=90.5
Q ss_pred CcccccceeeeCCcEEEEecCCCCCCccccccchHHHHHHHHHHcCccceeecC--C--------ccccccCCCeeEeec
Q psy899 182 NRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQF--Y--------DGTFPTDIPVLSLSD 251 (411)
Q Consensus 182 ~~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y--~--------~ie~~~Dl~vliLS~ 251 (411)
..+.+|+|.=||||+||||-.+|=. -..--..|+.++..+++.+.-+. . +-++|+|
T Consensus 321 ~~I~~GaLhkANGGyLIL~a~~LL~------~p~~W~~LKr~L~~~~i~ie~~~~~~~~~~~~l~PepIpl~-------- 386 (509)
T PF13654_consen 321 TLIKPGALHKANGGYLILDAEDLLA------NPYAWERLKRALRTGEIEIESPEEYGLSSTVSLEPEPIPLD-------- 386 (509)
T ss_dssp GGEE--HHHHTTTSEEEETTGGGS-------HHH-HHHHHHHHHHSEE--B-S---TTSGGGG-B-S-EE----------
T ss_pred ceEcCceEEecCCeEEEEEHHHhhh------ChHHHHHHHHHHHcCceeeccccccccCCCCCCCCCCcceE--------
Confidence 4589999999999999999988332 11347899999999999987442 1 1234444
Q ss_pred CCCCCCcceEEEecCCCCC-------chhHHHHHHHhhh------cCChhhHHHHHHHHHH-hhc-cCCCCChhHHHHHH
Q psy899 252 TKSMLPSDCHIKLKPDPSC-------SSVIRETFSAAHQ------YLKPELLNKIRTYISW-IQN-RGFDIPENLTEIVQ 316 (411)
Q Consensus 252 gKS~lp~Dl~vpl~~~~~~-------~~~~~e~i~~~~~------~~~~~~l~~lR~YLa~-aR~-~~~~i~ee~~~~Iq 316 (411)
+-|.+-.++.. |..+.+.+. +.. ..+++....|=.||+. |+. .-+.++.++...+-
T Consensus 387 --------vKVILiG~~~~y~~L~~~D~dF~~lFk-v~aef~~~~~~~~e~~~~~~~~i~~~~~~~~L~~~~~~Av~~li 457 (509)
T PF13654_consen 387 --------VKVILIGDRELYYLLYEYDPDFYKLFK-VKAEFDSEMPRTEENIRQYARFIASICQKEGLPPFDRSAVARLI 457 (509)
T ss_dssp ---------EEEEEE-TTHHHHS-HHHHHHHHHHS-EEEE--SEEE--HHHHHHHHHHHHHHHHHHSS--BBHHHHHHHH
T ss_pred --------EEEEEEcCHHHHHHHHHhCHHHHhCCC-EEEEccccCCCCHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 44444444321 111111110 000 0134445555555553 333 34678888888888
Q ss_pred HHHHHHhhcCC-CCCHHHHHHHHHHHhhhccccCCcccchhhHHHHHHhhcCCCCCCHHHHHHHHHH
Q psy899 317 KDFVEMRKENK-KTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALAM 382 (411)
Q Consensus 317 ddFV~~R~~~~-~it~~dLh~ll~LAR~~~~~~~~~~~~~~~~~rLlalS~G~~~lt~e~W~~a~~L 382 (411)
+.-+.+ ..++ +....++..+|+-|- .+|-..|.+.++.++-++|.+-
T Consensus 458 ~~~~R~-~q~kLsl~~~~l~~ll~EA~------------------~~A~~~~~~~I~~~~V~~Ai~~ 505 (509)
T PF13654_consen 458 EYSARL-DQDKLSLRFSWLADLLREAN------------------YWARKEGAKVITAEHVEQAIEE 505 (509)
T ss_dssp HHHHHC-C-SEEE--HHHHHHHHHHHH------------------HHHHHCT-SSB-HHHHHHHHHH
T ss_pred HHHHHH-hCCEeCCCHHHHHHHHHHHH------------------HHHHHhCCCccCHHHHHHHHHc
Confidence 777665 2223 677789999999888 8999999999999999998753
No 44
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=93.12 E-value=4.6 Score=41.18 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHHhhhccccCCcccchhhHHHHHHhhcCCCCCCHHHHHHHHH
Q psy899 328 KTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALA 381 (411)
Q Consensus 328 ~it~~dLh~ll~LAR~~~~~~~~~~~~~~~~~rLlalS~G~~~lt~e~W~~a~~ 381 (411)
..+..|+..+.+-|- ..|+..|...++.+++..|.+
T Consensus 326 g~sg~dl~~l~~~A~------------------~~a~~~~~~~i~~~d~~~a~~ 361 (364)
T TIGR01242 326 GASGADLKAICTEAG------------------MFAIREERDYVTMDDFIKAVE 361 (364)
T ss_pred CCCHHHHHHHHHHHH------------------HHHHHhCCCccCHHHHHHHHH
Confidence 468999999999888 899999999999999998864
No 45
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=92.69 E-value=1.2 Score=47.78 Aligned_cols=181 Identities=16% Similarity=0.180 Sum_probs=105.5
Q ss_pred eceEEEEeecCCCCccchhHHHHHHHHHHhccceE--EeeccccccccCC-----cceeecCCCC--cccccceeeeCCc
Q psy899 125 GKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSH--YFELNVKSLNETT-----MIPRKDYNTN--RLKSGLLQLSSST 195 (411)
Q Consensus 125 G~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~--yl~lt~~~LN~~~-----l~P~kD~~~~--~L~aG~LQLa~gT 195 (411)
.+.++.|+| -+|++ |+.+.+.+....++.. ++.+.-..+.... |--.+..-++ .=..|.+..|+||
T Consensus 209 ~~~pVlI~G--e~GtG---K~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gG 283 (509)
T PRK05022 209 SDLNVLILG--ETGVG---KELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAFTGAISNRSGKFELADGG 283 (509)
T ss_pred CCCcEEEEC--CCCcc---HHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhcCccccccCCCcccCCcchhhcCCC
Confidence 467899999 99999 9999999999888643 3333323332110 1001100000 1146788999999
Q ss_pred EEEEecCCCCCCccccccchHHHHHHHHHHcCccceeecCCccccccCCCeeEeecCC-------CCCCcce-----EEE
Q psy899 196 YLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSDTK-------SMLPSDC-----HIK 263 (411)
Q Consensus 196 ~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~gK-------S~lp~Dl-----~vp 263 (411)
.++|||.+ .+...-...|-.+++.+.+.- .-..-..++|++++..|... .-|..|+ .++
T Consensus 284 tL~ldeI~-------~L~~~~Q~~Ll~~l~~~~~~~--~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~~~~ 354 (509)
T PRK05022 284 TLFLDEIG-------ELPLALQAKLLRVLQYGEIQR--VGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFP 354 (509)
T ss_pred EEEecChh-------hCCHHHHHHHHHHHhcCCEee--CCCCcceecceEEEEecCCCHHHHHHcCCccHHHHhcccccE
Confidence 99999996 455566778888888776421 12234567788888877632 1233343 222
Q ss_pred ecCCCCCchhHHHHHHHhhhcCChhhHHHHHHHHHHhh-c---cCCCCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q psy899 264 LKPDPSCSSVIRETFSAAHQYLKPELLNKIRTYISWIQ-N---RGFDIPENLTEIVQKDFVEMRKENKKTDANDLHTLIV 339 (411)
Q Consensus 264 l~~~~~~~~~~~e~i~~~~~~~~~~~l~~lR~YLa~aR-~---~~~~i~ee~~~~IqddFV~~R~~~~~it~~dLh~ll~ 339 (411)
+.-.| +.+. .++....++.|+.... . ..+.+++++.+.+... +.+=+-++|...+.
T Consensus 355 i~lPp-----LreR--------~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y-------~WPGNvrEL~~~i~ 414 (509)
T PRK05022 355 LSVPP-----LRER--------GDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAY-------DWPGNVRELEHVIS 414 (509)
T ss_pred eeCCC-----chhc--------hhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC-------CCCCcHHHHHHHHH
Confidence 22111 0111 1223445666766542 2 2467888888777542 33556777776554
No 46
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.38 E-value=0.24 Score=42.79 Aligned_cols=89 Identities=18% Similarity=0.191 Sum_probs=59.9
Q ss_pred EEEEeecCCCCccchhHHHHHHHHHHhccceEE-eec----cccccccCCcceeecCCCCcccccceeee--CCcEEEEe
Q psy899 128 SLNIFHRDLATSCSDYAQMLYDILKLLVCKSHY-FEL----NVKSLNETTMIPRKDYNTNRLKSGLLQLS--SSTYLILD 200 (411)
Q Consensus 128 sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~y-l~l----t~~~LN~~~l~P~kD~~~~~L~aG~LQLa--~gT~lvID 200 (411)
++.|+| -||++ |+.|.+.+..+.....+ +.+ +.+.|-... .+. ......+.|.|.-+ +|.+++||
T Consensus 1 ~vlL~G--~~G~G---Kt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~-~~~--~~~~~~~~~~l~~a~~~~~il~lD 72 (139)
T PF07728_consen 1 PVLLVG--PPGTG---KTTLARELAALLGRPVIRINCSSDTTEEDLIGSY-DPS--NGQFEFKDGPLVRAMRKGGILVLD 72 (139)
T ss_dssp EEEEEE--SSSSS---HHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEE-ET---TTTTCEEE-CCCTTHHEEEEEEES
T ss_pred CEEEEC--CCCCC---HHHHHHHHHHHhhcceEEEEeccccccccceeee-eec--ccccccccccccccccceeEEEEC
Confidence 578999 99999 99999999888865543 333 222232211 111 23456677777733 79999999
Q ss_pred cCCCCCCccccccchHHHHHHHHHHcCccce
Q psy899 201 EIHLQPGQLNNTGCLNVKALSSVVNNQRMSY 231 (411)
Q Consensus 201 Et~L~eG~L~~~Gv~N~~AL~~li~~Q~v~Y 231 (411)
|.. ....+-..+|.++++...+..
T Consensus 73 Ein-------~a~~~v~~~L~~ll~~~~~~~ 96 (139)
T PF07728_consen 73 EIN-------RAPPEVLESLLSLLEERRIQL 96 (139)
T ss_dssp SCG-------G--HHHHHTTHHHHSSSEEEE
T ss_pred Ccc-------cCCHHHHHHHHHHHhhCcccc
Confidence 994 556678899999999887664
No 47
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=92.17 E-value=2.6 Score=47.71 Aligned_cols=129 Identities=18% Similarity=0.154 Sum_probs=75.8
Q ss_pred HHHHHHHHhhhcCcHHHHHHHHHHHhcceeeecCCceeeeceEEEEeecCCCCccchhHHHHHHHHHHhccceEEeeccc
Q psy899 86 KDLKLLLTQLLMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNV 165 (411)
Q Consensus 86 ~~Li~~La~~l~GD~laAEyLLL~L~S~V~~r~d~~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt~ 165 (411)
..|-..|...+.|...|.+.|.-++.-.-..-.+...++| ++.+.| -||++ |+.|.+.++..+. ..++-+..
T Consensus 450 ~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~--~~Lf~G--P~GvG---KT~lAk~LA~~l~-~~~i~id~ 521 (758)
T PRK11034 450 KNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVG--SFLFAG--PTGVG---KTEVTVQLSKALG-IELLRFDM 521 (758)
T ss_pred HHHHHHhcceEeCcHHHHHHHHHHHHHHhccccCCCCCcc--eEEEEC--CCCCC---HHHHHHHHHHHhC-CCcEEeec
Confidence 4466777778899999988877766432111111114555 679999 89999 8888887777663 22222211
Q ss_pred cccccC----Cc--ceeecC---CCCcccccceeeeCCcEEEEecCCCCCCccccccchHHHHHHHHHHcCccc
Q psy899 166 KSLNET----TM--IPRKDY---NTNRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMS 230 (411)
Q Consensus 166 ~~LN~~----~l--~P~kD~---~~~~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~ 230 (411)
...... .+ .| ..| +..++-..++.-.+.+++++||.+ ++..+-.++|..+|+.+.+.
T Consensus 522 se~~~~~~~~~LiG~~-~gyvg~~~~g~L~~~v~~~p~sVlllDEie-------ka~~~v~~~LLq~ld~G~lt 587 (758)
T PRK11034 522 SEYMERHTVSRLIGAP-PGYVGFDQGGLLTDAVIKHPHAVLLLDEIE-------KAHPDVFNLLLQVMDNGTLT 587 (758)
T ss_pred hhhcccccHHHHcCCC-CCcccccccchHHHHHHhCCCcEEEeccHh-------hhhHHHHHHHHHHHhcCeee
Confidence 111100 00 01 011 111111222333467999999995 66667788999999988775
No 48
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=92.16 E-value=1.4 Score=48.42 Aligned_cols=113 Identities=12% Similarity=0.141 Sum_probs=72.7
Q ss_pred eceEEEEeecCCCCccchhHHHHHHHHHHhccce--EEeeccccccccCC----cceeecCCCCcccccceeeeCCcEEE
Q psy899 125 GKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKS--HYFELNVKSLNETT----MIPRKDYNTNRLKSGLLQLSSSTYLI 198 (411)
Q Consensus 125 G~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs--~yl~lt~~~LN~~~----l~P~kD~~~~~L~aG~LQLa~gT~lv 198 (411)
.+.++.|.| -+|++ |+.+.+++....++. .++.+.-..++... +.-...+....=..|.+..|+||.|+
T Consensus 347 ~~~pvli~G--e~GtG---K~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ 421 (638)
T PRK11388 347 SSFPVLLCG--EEGVG---KALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSDRTDSENGRLSKFELAHGGTLF 421 (638)
T ss_pred cCCCEEEEC--CCCcC---HHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHhcCCCCcCccCCCCCceeECCCCEEE
Confidence 466899999 99999 999999999888753 34444333322110 11110111122346889999999999
Q ss_pred EecCCCCCCccccccchHHHHHHHHHHcCccceeecCCccccccCCCeeEeec
Q psy899 199 LDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSD 251 (411)
Q Consensus 199 IDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~ 251 (411)
|||.+ .+...-...|-.+++.+.+.=- ...-..++|+.++..|.
T Consensus 422 ldei~-------~l~~~~Q~~Ll~~l~~~~~~~~--~~~~~~~~~~riI~~t~ 465 (638)
T PRK11388 422 LEKVE-------YLSPELQSALLQVLKTGVITRL--DSRRLIPVDVRVIATTT 465 (638)
T ss_pred EcChh-------hCCHHHHHHHHHHHhcCcEEeC--CCCceEEeeEEEEEecc
Confidence 99996 4555666788888887765311 22345667777776665
No 49
>PRK10865 protein disaggregation chaperone; Provisional
Probab=91.85 E-value=1.9 Score=49.34 Aligned_cols=131 Identities=13% Similarity=0.189 Sum_probs=77.5
Q ss_pred HHHHHHHHhhhcCcHHHHHHHHHHHhcceeeecCCceeeeceEEEEeecCCCCccchhHHHHHHHHHHhccce--EEeec
Q psy899 86 KDLKLLLTQLLMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKS--HYFEL 163 (411)
Q Consensus 86 ~~Li~~La~~l~GD~laAEyLLL~L~S~V~~r~d~~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs--~yl~l 163 (411)
..|-..|...+.|...|-+.+.-++-.....-.+...++| ++.|.| -||++ |+.+.+.|...+..+ .++.+
T Consensus 560 ~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~--~~Lf~G--p~G~G---KT~lA~aLa~~l~~~~~~~i~i 632 (857)
T PRK10865 560 LRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIG--SFLFLG--PTGVG---KTELCKALANFMFDSDDAMVRI 632 (857)
T ss_pred HHHHHHhCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCc--eEEEEC--CCCCC---HHHHHHHHHHHhhcCCCcEEEE
Confidence 3455667767778888777766666432111111214455 778999 99999 999999888876432 22222
Q ss_pred cccccccC----Ccc--eee--cCCCCcccccceeeeCCcEEEEecCCCCCCccccccchHHHHHHHHHHcCccc
Q psy899 164 NVKSLNET----TMI--PRK--DYNTNRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMS 230 (411)
Q Consensus 164 t~~~LN~~----~l~--P~k--D~~~~~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~ 230 (411)
........ .+. |.. .|+..+.-.+.+...++++++|||.. ++...-...|-.+++.+.+.
T Consensus 633 d~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEie-------ka~~~v~~~Ll~ile~g~l~ 700 (857)
T PRK10865 633 DMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVE-------KAHPDVFNILLQVLDDGRLT 700 (857)
T ss_pred EhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehh-------hCCHHHHHHHHHHHhhCcee
Confidence 21221111 111 111 11112223445556678999999995 55567888899999988765
No 50
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=91.62 E-value=2.4 Score=44.37 Aligned_cols=115 Identities=14% Similarity=0.174 Sum_probs=75.8
Q ss_pred eeeceEEEEeecCCCCccchhHHHHHHHHHHhccce--EEeeccccccccCCc-----ceee-cC-CCCcccccceeeeC
Q psy899 123 ALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKS--HYFELNVKSLNETTM-----IPRK-DY-NTNRLKSGLLQLSS 193 (411)
Q Consensus 123 ~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs--~yl~lt~~~LN~~~l-----~P~k-D~-~~~~L~aG~LQLa~ 193 (411)
.....++.|+| -+|++ |+.+...+....++. .++.+....++...+ --.+ -+ +......|.+..++
T Consensus 158 ~~~~~~vli~G--e~GtG---K~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~~~~~~~~~~g~~~~a~ 232 (469)
T PRK10923 158 SRSSISVLING--ESGTG---KELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQAD 232 (469)
T ss_pred hccCCeEEEEe--CCCCc---HHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCCCCCCCcCCCCCeeECC
Confidence 34677899999 99999 999999998888764 344444333322111 0000 00 11235688899999
Q ss_pred CcEEEEecCCCCCCccccccchHHHHHHHHHHcCccceeecCCccccccCCCeeEeec
Q psy899 194 STYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSD 251 (411)
Q Consensus 194 gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~ 251 (411)
||.++|||.+ .+.......|..+++.+++.=. .. .-...+|+.+++.|.
T Consensus 233 ~Gtl~l~~i~-------~l~~~~q~~L~~~l~~~~~~~~-~~-~~~~~~~~rii~~~~ 281 (469)
T PRK10923 233 GGTLFLDEIG-------DMPLDVQTRLLRVLADGQFYRV-GG-YAPVKVDVRIIAATH 281 (469)
T ss_pred CCEEEEeccc-------cCCHHHHHHHHHHHhcCcEEeC-CC-CCeEEeeEEEEEeCC
Confidence 9999999995 5555777888889988764311 11 224567888888776
No 51
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=91.54 E-value=9.4 Score=43.74 Aligned_cols=130 Identities=12% Similarity=0.153 Sum_probs=77.9
Q ss_pred HHHHHHHhhhcCcHHHHHHHHHHHhcceeeecCCceeeeceEEEEeecCCCCccchhHHHHHHHHHHhccc----eEEee
Q psy899 87 DLKLLLTQLLMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCK----SHYFE 162 (411)
Q Consensus 87 ~Li~~La~~l~GD~laAEyLLL~L~S~V~~r~d~~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Pr----s~yl~ 162 (411)
.+-..|...+.|...|-+.+.-++...-..-.+...+.| ++.+.| -||++ |+.+.+.+...+-. ..++.
T Consensus 558 ~l~~~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~--~~Lf~G--p~GvG---Kt~lA~~La~~l~~~~~~~i~~d 630 (852)
T TIGR03346 558 HMEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIG--SFLFLG--PTGVG---KTELAKALAEFLFDDEDAMVRID 630 (852)
T ss_pred HHHHHhhcccCCChHHHHHHHHHHHHHhccCCCCCCCCe--EEEEEc--CCCCC---HHHHHHHHHHHhcCCCCcEEEEe
Confidence 355667778899999999988887653111011113344 457889 89999 99999999887643 23333
Q ss_pred ccc--cccccCCc--ceee--cCCCCcccccceeeeCCcEEEEecCCCCCCccccccchHHHHHHHHHHcCccc
Q psy899 163 LNV--KSLNETTM--IPRK--DYNTNRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMS 230 (411)
Q Consensus 163 lt~--~~LN~~~l--~P~k--D~~~~~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~ 230 (411)
++. +......+ .|.. .|+..+.-.+.+...++.++++||.. ++...-...|-.+++.+.+.
T Consensus 631 ~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeie-------ka~~~v~~~Ll~~l~~g~l~ 697 (852)
T TIGR03346 631 MSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVE-------KAHPDVFNVLLQVLDDGRLT 697 (852)
T ss_pred chhhcccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccc-------cCCHHHHHHHHHHHhcCcee
Confidence 321 00000011 1110 11111111233445567899999995 66667888999999998876
No 52
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=91.25 E-value=1.3 Score=45.94 Aligned_cols=113 Identities=13% Similarity=0.172 Sum_probs=73.6
Q ss_pred eceEEEEeecCCCCccchhHHHHHHHHHHhccceE--EeeccccccccCC-----cceeecC--CCCcccccceeeeCCc
Q psy899 125 GKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSH--YFELNVKSLNETT-----MIPRKDY--NTNRLKSGLLQLSSST 195 (411)
Q Consensus 125 G~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~--yl~lt~~~LN~~~-----l~P~kD~--~~~~L~aG~LQLa~gT 195 (411)
.+.++.|.| -+|++ +..+.+.+....++.. ++.+.-..++... |-..+.. +...-..|.+..++||
T Consensus 161 ~~~~vli~G--e~GtG---K~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 235 (445)
T TIGR02915 161 SDITVLLLG--ESGTG---KEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYAHGG 235 (445)
T ss_pred CCCCEEEEC--CCCcC---HHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCceeECCCC
Confidence 467889999 99999 9999999988887542 3333323322111 1111110 0112357889999999
Q ss_pred EEEEecCCCCCCccccccchHHHHHHHHHHcCccceeecCCccccccCCCeeEeec
Q psy899 196 YLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSD 251 (411)
Q Consensus 196 ~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~ 251 (411)
.++|||.+ .+...-...|-.+++.+.+.=. . ..-+.++|+.++..|.
T Consensus 236 tl~l~~i~-------~l~~~~q~~l~~~l~~~~~~~~-~-~~~~~~~~~rii~~~~ 282 (445)
T TIGR02915 236 TLFLDEIG-------DLPLNLQAKLLRFLQERVIERL-G-GREEIPVDVRIVCATN 282 (445)
T ss_pred EEEEechh-------hCCHHHHHHHHHHHhhCeEEeC-C-CCceeeeceEEEEecC
Confidence 99999995 5555777888889988764221 2 2345678888888776
No 53
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=90.99 E-value=4.5 Score=44.66 Aligned_cols=97 Identities=16% Similarity=0.234 Sum_probs=61.2
Q ss_pred EEEEeecCCCCccchhHHHHHHHHHHhccc---------eEEeeccccccccC------Cccee-ec------------C
Q psy899 128 SLNIFHRDLATSCSDYAQMLYDILKLLVCK---------SHYFELNVKSLNET------TMIPR-KD------------Y 179 (411)
Q Consensus 128 sLnL~g~~~P~~~~~~~s~L~~~l~~L~Pr---------s~yl~lt~~~LN~~------~l~P~-kD------------~ 179 (411)
++.|.| -||++ |+.|.+.+...+.. ..++.+....+... .+... .+ .
T Consensus 177 ~vlL~G--p~GtG---KTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~ 251 (615)
T TIGR02903 177 HIILYG--PPGVG---KTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAET 251 (615)
T ss_pred eEEEEC--CCCCC---HHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHc
Confidence 689999 99999 88888888766632 23333332222100 00000 00 0
Q ss_pred CCCcccccceeeeCCcEEEEecCCCCCCccccccchHHHHHHHHHHcCccceeecCC
Q psy899 180 NTNRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFY 236 (411)
Q Consensus 180 ~~~~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~ 236 (411)
+......|.+.-++||+++|||+. .+.......|..+|+.+++.+.-.|+
T Consensus 252 gl~~~~~g~v~~asgGvL~LDEi~-------~Ld~~~Q~~Ll~~Le~~~v~~~~~~~ 301 (615)
T TIGR02903 252 GVPEPKTGLVTDAHGGVLFIDEIG-------ELDPLLQNKLLKVLEDKRVEFSSSYY 301 (615)
T ss_pred CCCchhcCchhhcCCCeEEEeccc-------cCCHHHHHHHHHHHhhCeEEeeccee
Confidence 112345677778889999999985 45567889999999999887654444
No 54
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=90.39 E-value=2.4 Score=45.63 Aligned_cols=113 Identities=18% Similarity=0.148 Sum_probs=71.6
Q ss_pred eceEEEEeecCCCCccchhHHHHHHHHHHhccce--EEeeccccccccCC-----cceee-cC-CCCcccccceeeeCCc
Q psy899 125 GKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKS--HYFELNVKSLNETT-----MIPRK-DY-NTNRLKSGLLQLSSST 195 (411)
Q Consensus 125 G~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs--~yl~lt~~~LN~~~-----l~P~k-D~-~~~~L~aG~LQLa~gT 195 (411)
.+.++.|.| -+|++ |+.+.+.+....++. .|+.+.-+.+.... |-... .+ +...-..|.+..|+||
T Consensus 226 ~~~pvlI~G--E~GtG---K~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~G 300 (520)
T PRK10820 226 LDAPLLITG--DTGTG---KDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALEGKKGFFEQANGG 300 (520)
T ss_pred CCCCEEEEC--CCCcc---HHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhcCCCCCCcCCcccCCCChhhhcCCC
Confidence 356799999 99999 999999998887765 34555444443211 11010 00 0012246889999999
Q ss_pred EEEEecCCCCCCccccccchHHHHHHHHHHcCccceeecCCccccccCCCeeEeec
Q psy899 196 YLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSD 251 (411)
Q Consensus 196 ~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~ 251 (411)
.++|||.+ ++...-...|-.+++.++. .-.-..-+.++|+.++.-|.
T Consensus 301 tL~LdeI~-------~L~~~~Q~~Ll~~l~~~~~--~~~g~~~~~~~~vRiI~st~ 347 (520)
T PRK10820 301 SVLLDEIG-------EMSPRMQAKLLRFLNDGTF--RRVGEDHEVHVDVRVICATQ 347 (520)
T ss_pred EEEEeChh-------hCCHHHHHHHHHHHhcCCc--ccCCCCcceeeeeEEEEecC
Confidence 99999996 4445666778888887642 11122345677887666544
No 55
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=90.36 E-value=2.5 Score=45.49 Aligned_cols=113 Identities=15% Similarity=0.213 Sum_probs=72.2
Q ss_pred eceEEEEeecCCCCccchhHHHHHHHHHHhccce--EEeeccccccccCCcc-----eeec-CC-CCcccccceeeeCCc
Q psy899 125 GKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKS--HYFELNVKSLNETTMI-----PRKD-YN-TNRLKSGLLQLSSST 195 (411)
Q Consensus 125 G~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs--~yl~lt~~~LN~~~l~-----P~kD-~~-~~~L~aG~LQLa~gT 195 (411)
.+.++.|.| -+|++ |+.+.+++....++. .++.+.-..++...+. -.+. +. ...-..|.+..++||
T Consensus 218 ~~~pvli~G--e~GtG---K~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~G 292 (534)
T TIGR01817 218 SNSTVLLRG--ESGTG---KELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHEKGAFTGAIAQRKGRFELADGG 292 (534)
T ss_pred cCCCEEEEC--CCCcc---HHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHHHHcCCCCCccCCCCcCCCCcccccCCC
Confidence 356899999 99999 999999999988753 3454444443321110 0010 00 011246889999999
Q ss_pred EEEEecCCCCCCccccccchHHHHHHHHHHcCccceeecCCccccccCCCeeEeec
Q psy899 196 YLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSD 251 (411)
Q Consensus 196 ~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~ 251 (411)
.++|||.+ ++...-...|-.+++.+.+.= .-..-..++|+.++..|.
T Consensus 293 tL~ldei~-------~L~~~~Q~~Ll~~l~~~~~~~--~~~~~~~~~~~riI~~s~ 339 (534)
T TIGR01817 293 TLFLDEIG-------EISPAFQAKLLRVLQEGEFER--VGGNRTLKVDVRLVAATN 339 (534)
T ss_pred eEEEechh-------hCCHHHHHHHHHHHhcCcEEE--CCCCceEeecEEEEEeCC
Confidence 99999996 455566777888888765321 112235667777766665
No 56
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=90.29 E-value=0.72 Score=41.21 Aligned_cols=100 Identities=16% Similarity=0.167 Sum_probs=59.1
Q ss_pred EEEEeecCCCCccchhHHHHHHHHHHhccceEE-eec----cccccccCCcceeecC--CCCcccccceeeeCCcEEEEe
Q psy899 128 SLNIFHRDLATSCSDYAQMLYDILKLLVCKSHY-FEL----NVKSLNETTMIPRKDY--NTNRLKSGLLQLSSSTYLILD 200 (411)
Q Consensus 128 sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~y-l~l----t~~~LN~~~l~P~kD~--~~~~L~aG~LQLa~gT~lvID 200 (411)
|+.|.| .||.+ |..+.+.+...+-...- +.+ ..+.+.+.. .-|. ..+.+..|.+- .+++++|
T Consensus 1 HvLleg--~PG~G---KT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~---v~~~~~~~f~~~~GPif---~~ill~D 69 (131)
T PF07726_consen 1 HVLLEG--VPGVG---KTTLAKALARSLGLSFKRIQFTPDLLPSDILGFP---VYDQETGEFEFRPGPIF---TNILLAD 69 (131)
T ss_dssp -EEEES-----HH---HHHHHHHHHHHTT--EEEEE--TT--HHHHHEEE---EEETTTTEEEEEE-TT----SSEEEEE
T ss_pred CEeeEC--CCccH---HHHHHHHHHHHcCCceeEEEecCCCCcccceeee---eeccCCCeeEeecChhh---hceeeec
Confidence 688999 99999 88888877776654322 333 333343332 3332 34567777776 4799999
Q ss_pred cCCCCCCccccccchHHHHHHHHHHcCccceeecCCccccccCCCeeEe
Q psy899 201 EIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSL 249 (411)
Q Consensus 201 Et~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliL 249 (411)
|. |-...+-.+||-++|+..+|+++ ...++.--|+.|+
T Consensus 70 Ei-------NrappktQsAlLeam~Er~Vt~~----g~~~~lp~pf~Vi 107 (131)
T PF07726_consen 70 EI-------NRAPPKTQSALLEAMEERQVTID----GQTYPLPDPFFVI 107 (131)
T ss_dssp TG-------GGS-HHHHHHHHHHHHHSEEEET----TEEEE--SS-EEE
T ss_pred cc-------ccCCHHHHHHHHHHHHcCeEEeC----CEEEECCCcEEEE
Confidence 99 57777899999999999999976 2333344444444
No 57
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=88.86 E-value=1.7 Score=44.80 Aligned_cols=112 Identities=15% Similarity=0.231 Sum_probs=70.7
Q ss_pred ceEEEEeecCCCCccchhHHHHHHHHHHhccce--EEeeccccccccCCcce-----eec-C-CCCcccccceeeeCCcE
Q psy899 126 KFSLNIFHRDLATSCSDYAQMLYDILKLLVCKS--HYFELNVKSLNETTMIP-----RKD-Y-NTNRLKSGLLQLSSSTY 196 (411)
Q Consensus 126 ~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs--~yl~lt~~~LN~~~l~P-----~kD-~-~~~~L~aG~LQLa~gT~ 196 (411)
..++.+.| .++++ ++.+.+.+....++. .++.+.-..++...+-. .+. . +...-..|.+..|+||.
T Consensus 162 ~~~vli~g--e~g~g---k~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 236 (441)
T PRK10365 162 EATVLIHG--DSGTG---KELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 (441)
T ss_pred CCeEEEEe--cCCCC---HHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCceeECCCCE
Confidence 45788899 89998 999999998888764 34444433332211100 000 0 01122578899999999
Q ss_pred EEEecCCCCCCccccccchHHHHHHHHHHcCccceeecCCccccccCCCeeEeec
Q psy899 197 LILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSD 251 (411)
Q Consensus 197 lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~ 251 (411)
++|||.+ .+...-...|..+++.+.+.-. + ..-..++|+.++..|.
T Consensus 237 l~ldei~-------~l~~~~q~~l~~~l~~~~~~~~-~-~~~~~~~~~rii~~t~ 282 (441)
T PRK10365 237 LFLDEIG-------DISPMMQVRLLRAIQEREVQRV-G-SNQTISVDVRLIAATH 282 (441)
T ss_pred EEEeccc-------cCCHHHHHHHHHHHccCcEEeC-C-CCceeeeceEEEEeCC
Confidence 9999996 4455666788888888765322 1 2234566777766665
No 58
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=88.41 E-value=2 Score=45.12 Aligned_cols=131 Identities=18% Similarity=0.183 Sum_probs=78.6
Q ss_pred HHHHHHHhhhcCcHHHHHHHHHHHh---cceeee-c--CCceeeeceEEEEeecCCCCccchhHHHHHHHHHHhccceEE
Q psy899 87 DLKLLLTQLLMGDDVAADYLICYLL---SRVYCR-D--EVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHY 160 (411)
Q Consensus 87 ~Li~~La~~l~GD~laAEyLLL~L~---S~V~~r-~--d~~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~y 160 (411)
++..+|...+.|.+.|++.|...+. -++... . +. ..+.+-++.|+| -||++ |+.|.+.++..+.. .+
T Consensus 64 ~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~-~~~~~~~iLl~G--p~GtG---KT~lAr~lA~~l~~-pf 136 (412)
T PRK05342 64 EIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDD-VELQKSNILLIG--PTGSG---KTLLAQTLARILDV-PF 136 (412)
T ss_pred HHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccc-cccCCceEEEEc--CCCCC---HHHHHHHHHHHhCC-Cc
Confidence 3667787778999999998876653 222111 1 12 556788999999 99999 88888888766532 11
Q ss_pred eeccccccccCCcceeecCCC----Ccc------cccceeeeCCcEEEEecCC-CCCC------ccccccchHHHHHHHH
Q psy899 161 FELNVKSLNETTMIPRKDYNT----NRL------KSGLLQLSSSTYLILDEIH-LQPG------QLNNTGCLNVKALSSV 223 (411)
Q Consensus 161 l~lt~~~LN~~~l~P~kD~~~----~~L------~aG~LQLa~gT~lvIDEt~-L~eG------~L~~~Gv~N~~AL~~l 223 (411)
+.+....+ .+ ..|.. +.+ ..|.+..+.+++++|||.+ +... .=+--|..-.++|-.+
T Consensus 137 ~~id~~~l-----~~-~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~ 210 (412)
T PRK05342 137 AIADATTL-----TE-AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKI 210 (412)
T ss_pred eecchhhc-----cc-CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHH
Confidence 21221112 11 11211 111 1244566789999999998 4321 0111223346899999
Q ss_pred HHcCccc
Q psy899 224 VNNQRMS 230 (411)
Q Consensus 224 i~~Q~v~ 230 (411)
|+...+.
T Consensus 211 Leg~~~~ 217 (412)
T PRK05342 211 LEGTVAS 217 (412)
T ss_pred HhcCeEE
Confidence 9855444
No 59
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=88.05 E-value=4 Score=46.78 Aligned_cols=159 Identities=14% Similarity=0.111 Sum_probs=91.2
Q ss_pred CCChHHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHhcceeeecCCceeeeceEEEEeecCCCCccchhHHHHHHHHHHh
Q psy899 75 DISSEEIASTRKDLKLLLTQLLMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLL 154 (411)
Q Consensus 75 ~is~~~~~~iR~~Li~~La~~l~GD~laAEyLLL~L~S~V~~r~d~~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L 154 (411)
.++.++.+.+ ..|-..|...+.|-..|-+.+.-++......-.+...++| ++.+.| -||++ |+.|.+.|...
T Consensus 548 ~~~~~e~~~l-~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~--~~lf~G--p~GvG---KT~lA~~La~~ 619 (852)
T TIGR03345 548 RMVRDEIEAV-LSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLG--VFLLVG--PSGVG---KTETALALAEL 619 (852)
T ss_pred hhchhHHHHH-HHHHHHhcCeEcChHHHHHHHHHHHHHHhcCCCCCCCCce--EEEEEC--CCCCC---HHHHHHHHHHH
Confidence 3444444433 4466778888999999988888777543111112225566 678999 89999 88888888776
Q ss_pred cc----ceEEeecc-------ccccccCCcceeecCCCCcccccceeeeCCcEEEEecCCCCCCccccccchHHHHHHHH
Q psy899 155 VC----KSHYFELN-------VKSLNETTMIPRKDYNTNRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVKALSSV 223 (411)
Q Consensus 155 ~P----rs~yl~lt-------~~~LN~~~l~P~kD~~~~~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~l 223 (411)
+= +...+.|+ +..|.+.+.- .-.|+..++-..++.-.+.+++++||.. ++...-...|..+
T Consensus 620 l~~~~~~~~~~dmse~~~~~~~~~l~g~~~g-yvg~~~~g~L~~~v~~~p~svvllDEie-------ka~~~v~~~Llq~ 691 (852)
T TIGR03345 620 LYGGEQNLITINMSEFQEAHTVSRLKGSPPG-YVGYGEGGVLTEAVRRKPYSVVLLDEVE-------KAHPDVLELFYQV 691 (852)
T ss_pred HhCCCcceEEEeHHHhhhhhhhccccCCCCC-cccccccchHHHHHHhCCCcEEEEechh-------hcCHHHHHHHHHH
Confidence 51 22233331 1122111100 0112111222233444578999999994 6666778899999
Q ss_pred HHcCccceeecCCccccccCCCeeEeec
Q psy899 224 VNNQRMSYDFQFYDGTFPTDIPVLSLSD 251 (411)
Q Consensus 224 i~~Q~v~YdF~y~~ie~~~Dl~vliLS~ 251 (411)
+....+. |..-..++|. +.-+++.|.
T Consensus 692 ld~g~l~-d~~Gr~vd~~-n~iiI~TSN 717 (852)
T TIGR03345 692 FDKGVME-DGEGREIDFK-NTVILLTSN 717 (852)
T ss_pred hhcceee-cCCCcEEecc-ccEEEEeCC
Confidence 9988875 3233344443 333444444
No 60
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=87.85 E-value=6.5 Score=41.83 Aligned_cols=138 Identities=17% Similarity=0.278 Sum_probs=84.7
Q ss_pred eeee-CCcEEEEecCC-CCC-C---ccccccchHHHHHHHHHHcCccceeecCCccccccCCCeeEeecC----C--CCC
Q psy899 189 LQLS-SSTYLILDEIH-LQP-G---QLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSDT----K--SML 256 (411)
Q Consensus 189 LQLa-~gT~lvIDEt~-L~e-G---~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~g----K--S~l 256 (411)
++.+ +.|+++|||++ +.. + .-|-.|..--++|-.+|+--+|+..| ..++|+-=.-|.|.. | -|+
T Consensus 244 i~~ae~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~----~~i~T~~ILFI~~GAF~~~kp~DlI 319 (443)
T PRK05201 244 IERVEQNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKY----GMVKTDHILFIASGAFHVSKPSDLI 319 (443)
T ss_pred HHHHHcCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecc----eeEECCceeEEecCCcCCCChhhcc
Confidence 4554 89999999998 331 1 22444555667888888888887643 334555433344432 1 144
Q ss_pred C-----cceEEEecCCCCCchhHHHHHHHhhhcCChhhHHHHHHHHHHhhc--cCCCCChhHHHHHHHHHHHHhhcCCCC
Q psy899 257 P-----SDCHIKLKPDPSCSSVIRETFSAAHQYLKPELLNKIRTYISWIQN--RGFDIPENLTEIVQKDFVEMRKENKKT 329 (411)
Q Consensus 257 p-----~Dl~vpl~~~~~~~~~~~e~i~~~~~~~~~~~l~~lR~YLa~aR~--~~~~i~ee~~~~IqddFV~~R~~~~~i 329 (411)
| |.+.+.+.+=. .+.+. +.+++..-..++.|.+..+. ....+++++.+.|.+.=.++=....++
T Consensus 320 PEl~GR~Pi~v~L~~L~------~~dL~---~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~i 390 (443)
T PRK05201 320 PELQGRFPIRVELDALT------EEDFV---RILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENI 390 (443)
T ss_pred HHHhCccceEEECCCCC------HHHHH---HHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhccccccc
Confidence 4 44444444332 11111 12344455688999888774 567789999999977655543444579
Q ss_pred CHHHHHHHHH
Q psy899 330 DANDLHTLIV 339 (411)
Q Consensus 330 t~~dLh~ll~ 339 (411)
.++-||..+.
T Consensus 391 GAR~LrtI~E 400 (443)
T PRK05201 391 GARRLHTVME 400 (443)
T ss_pred chhhHHHHHH
Confidence 9999998865
No 61
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=87.55 E-value=11 Score=39.21 Aligned_cols=113 Identities=13% Similarity=0.187 Sum_probs=69.3
Q ss_pred eceEEEEeecCCCCccchhHHHHHHHHHHhccceE--EeeccccccccCCcce-----ee-cC-CCCcccccceeeeCCc
Q psy899 125 GKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSH--YFELNVKSLNETTMIP-----RK-DY-NTNRLKSGLLQLSSST 195 (411)
Q Consensus 125 G~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~--yl~lt~~~LN~~~l~P-----~k-D~-~~~~L~aG~LQLa~gT 195 (411)
...++.+.| -++++ +..+...+....++.. ++.+....++...+.. .+ .+ +...-..|.+..++||
T Consensus 156 ~~~~vli~G--e~GtG---K~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 230 (463)
T TIGR01818 156 SDITVLING--ESGTG---KELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQADGG 230 (463)
T ss_pred cCCeEEEEC--CCCCC---HHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEEECCCC
Confidence 356788999 99999 8889899988887643 3333333322111100 00 00 0112246889999999
Q ss_pred EEEEecCCCCCCccccccchHHHHHHHHHHcCccceeecCCccccccCCCeeEeec
Q psy899 196 YLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSD 251 (411)
Q Consensus 196 ~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~ 251 (411)
.++|||.+ .+...-...|-.+++.+.+.-. . ..-..++|+.++..|.
T Consensus 231 tl~l~ei~-------~l~~~~q~~ll~~l~~~~~~~~-~-~~~~~~~~~rii~~~~ 277 (463)
T TIGR01818 231 TLFLDEIG-------DMPLDAQTRLLRVLADGEFYRV-G-GRTPIKVDVRIVAATH 277 (463)
T ss_pred eEEEEchh-------hCCHHHHHHHHHHHhcCcEEEC-C-CCceeeeeeEEEEeCC
Confidence 99999996 4444556778888887754321 1 2234667777666665
No 62
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=87.55 E-value=4.9 Score=44.66 Aligned_cols=183 Identities=14% Similarity=0.189 Sum_probs=104.0
Q ss_pred eeceEEEEeecCCCCccchhHHHHHHHHHHhccce--EEeeccccccccC-----CcceeecC--CCCcccccceeeeCC
Q psy899 124 LGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKS--HYFELNVKSLNET-----TMIPRKDY--NTNRLKSGLLQLSSS 194 (411)
Q Consensus 124 lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs--~yl~lt~~~LN~~-----~l~P~kD~--~~~~L~aG~LQLa~g 194 (411)
-.+.++.|+| -+|++ |+.+.+.+....++. .++.+.-..++.. .|--.+.. +...-..|.+..++|
T Consensus 397 ~~~~pVLI~G--E~GTG---K~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~ 471 (686)
T PRK15429 397 QSDSTVLILG--ETGTG---KELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADK 471 (686)
T ss_pred CCCCCEEEEC--CCCcC---HHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcCcccccccccccchhhHHHhcCC
Confidence 4567899999 99999 999999998888754 3333333333221 11111100 011224578899999
Q ss_pred cEEEEecCCCCCCccccccchHHHHHHHHHHcCccceeecCCccccccCCCeeEeecCC-------CCCCcceE-----E
Q psy899 195 TYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSDTK-------SMLPSDCH-----I 262 (411)
Q Consensus 195 T~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~gK-------S~lp~Dl~-----v 262 (411)
|.++|||.+ .....-...|..+++.+.+.-- -..-..+.|+.++..|... .-|..|+. +
T Consensus 472 GtL~Ldei~-------~L~~~~Q~~L~~~l~~~~~~~~--g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~ 542 (686)
T PRK15429 472 SSLFLDEVG-------DMPLELQPKLLRVLQEQEFERL--GSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVF 542 (686)
T ss_pred CeEEEechh-------hCCHHHHHHHHHHHHhCCEEeC--CCCCcccceEEEEEeCCCCHHHHHHcCcccHHHHhccCee
Confidence 999999996 4555667788888887743221 1223456777777776532 11222221 1
Q ss_pred EecCCCCCchhHHHHHHHhhhcCChhhHHHHHHHHHHh-hc--cC-CCCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q psy899 263 KLKPDPSCSSVIRETFSAAHQYLKPELLNKIRTYISWI-QN--RG-FDIPENLTEIVQKDFVEMRKENKKTDANDLHTLI 338 (411)
Q Consensus 263 pl~~~~~~~~~~~e~i~~~~~~~~~~~l~~lR~YLa~a-R~--~~-~~i~ee~~~~IqddFV~~R~~~~~it~~dLh~ll 338 (411)
++.-.| +.+. .++-...++.|+... +. .. ..+++++.+.+.. -+.+=+-++|...+
T Consensus 543 ~i~lPp-----LreR--------~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~-------y~WPGNvrEL~~~i 602 (686)
T PRK15429 543 PIHLPP-----LRER--------PEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSN-------MEWPGNVRELENVI 602 (686)
T ss_pred EEeCCC-----hhhh--------HhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHh-------CCCCCcHHHHHHHH
Confidence 121111 1111 223455677777654 32 22 3588888777632 34466777887665
Q ss_pred HH
Q psy899 339 VL 340 (411)
Q Consensus 339 ~L 340 (411)
.-
T Consensus 603 ~~ 604 (686)
T PRK15429 603 ER 604 (686)
T ss_pred HH
Confidence 53
No 63
>PRK15115 response regulator GlrR; Provisional
Probab=87.40 E-value=5 Score=41.56 Aligned_cols=115 Identities=17% Similarity=0.211 Sum_probs=73.6
Q ss_pred eeeceEEEEeecCCCCccchhHHHHHHHHHHhccce--EEeeccccccccCC----cce-eec-C-CCCcccccceeeeC
Q psy899 123 ALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKS--HYFELNVKSLNETT----MIP-RKD-Y-NTNRLKSGLLQLSS 193 (411)
Q Consensus 123 ~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs--~yl~lt~~~LN~~~----l~P-~kD-~-~~~~L~aG~LQLa~ 193 (411)
+..+.++.|.| -++++ +..+...+....++. .++.+.-..++... +.. .+. + +......|.+..++
T Consensus 154 a~~~~~vli~G--e~GtG---k~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~ 228 (444)
T PRK15115 154 AQSDVSVLING--QSGTG---KEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAE 228 (444)
T ss_pred ccCCCeEEEEc--CCcch---HHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEECC
Confidence 34567889999 99999 889999998888764 23334333332211 000 010 0 11234678999999
Q ss_pred CcEEEEecCCCCCCccccccchHHHHHHHHHHcCccceeecCCccccccCCCeeEeec
Q psy899 194 STYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSD 251 (411)
Q Consensus 194 gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~ 251 (411)
||.++|||.+ .+...-...|-.+++.+++. .--..-...+|+.++..|.
T Consensus 229 ~gtl~l~~i~-------~l~~~~q~~L~~~l~~~~~~--~~g~~~~~~~~~rii~~~~ 277 (444)
T PRK15115 229 GGTLFLDEIG-------DMPAPLQVKLLRVLQERKVR--PLGSNRDIDIDVRIISATH 277 (444)
T ss_pred CCEEEEEccc-------cCCHHHHHHHHHHHhhCCEE--eCCCCceeeeeEEEEEeCC
Confidence 9999999996 44446677888888887652 1222335667777776665
No 64
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=86.87 E-value=22 Score=36.44 Aligned_cols=92 Identities=12% Similarity=0.097 Sum_probs=56.3
Q ss_pred EEEEeecCCCCccchhHHHHHHHHHHhccceEE-eec----cccccccCCcceeecCC-CCcccccceeee--CCcEEEE
Q psy899 128 SLNIFHRDLATSCSDYAQMLYDILKLLVCKSHY-FEL----NVKSLNETTMIPRKDYN-TNRLKSGLLQLS--SSTYLIL 199 (411)
Q Consensus 128 sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~y-l~l----t~~~LN~~~l~P~kD~~-~~~L~aG~LQLa--~gT~lvI 199 (411)
++.|.| -||++ |+.+.+.+..-+-...+ +.+ +...+-+......++.. ......|.|-.| .|..+++
T Consensus 66 ~ilL~G--~pGtG---KTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illl 140 (327)
T TIGR01650 66 RVMVQG--YHGTG---KSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCF 140 (327)
T ss_pred cEEEEe--CCCCh---HHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEe
Confidence 579999 99999 88888877665543332 222 22223333222233332 235678888554 5677999
Q ss_pred ecCCCCCCccccccchHHHHHHHHHHc-Cccce
Q psy899 200 DEIHLQPGQLNNTGCLNVKALSSVVNN-QRMSY 231 (411)
Q Consensus 200 DEt~L~eG~L~~~Gv~N~~AL~~li~~-Q~v~Y 231 (411)
||.+ ....+-..+|+.+++. .++..
T Consensus 141 DEin-------~a~p~~~~~L~~lLE~~~~l~i 166 (327)
T TIGR01650 141 DEYD-------AGRPDVMFVIQRVLEAGGKLTL 166 (327)
T ss_pred chhh-------ccCHHHHHHHHHHhccCCeEEE
Confidence 9996 3344567889999984 34444
No 65
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=86.57 E-value=5 Score=42.61 Aligned_cols=193 Identities=13% Similarity=0.201 Sum_probs=99.2
Q ss_pred EEEEeecCCCCccchhHHHHHHHHHHhccceEEeeccccccccCCcceeecCCCCcccccceeeeC---CcEEEEecCC-
Q psy899 128 SLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQLSS---STYLILDEIH- 203 (411)
Q Consensus 128 sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt~~~LN~~~l~P~kD~~~~~L~aG~LQLa~---gT~lvIDEt~- 203 (411)
.+.|.| -||++ |+.+.+++...+... ++.+....+-+ +...+..++....+.+|. .++++|||.+
T Consensus 219 gVLL~G--PPGTG---KT~LAraIA~el~~~-fi~V~~seL~~-----k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~ 287 (438)
T PTZ00361 219 GVILYG--PPGTG---KTLLAKAVANETSAT-FLRVVGSELIQ-----KYLGDGPKLVRELFRVAEENAPSIVFIDEIDA 287 (438)
T ss_pred EEEEEC--CCCCC---HHHHHHHHHHhhCCC-EEEEecchhhh-----hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHH
Confidence 378999 99999 999999988876543 23333222211 111122334444555553 3579999987
Q ss_pred CCCCcc--ccccchH-HHHHHHHHHcCccceeecCCccccccCCCeeEeecCCC-----CC---CcceEEEecCCCCCch
Q psy899 204 LQPGQL--NNTGCLN-VKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSDTKS-----ML---PSDCHIKLKPDPSCSS 272 (411)
Q Consensus 204 L~eG~L--~~~Gv~N-~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~gKS-----~l---p~Dl~vpl~~~~~~~~ 272 (411)
+-...- +..|... ...+.+++.+- | .+ .-..++.++..+..-. ++ .||..|.+.+-.
T Consensus 288 l~~kR~~~~sgg~~e~qr~ll~LL~~L----d-g~---~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd---- 355 (438)
T PTZ00361 288 IGTKRYDATSGGEKEIQRTMLELLNQL----D-GF---DSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPD---- 355 (438)
T ss_pred HhccCCCCCCcccHHHHHHHHHHHHHH----h-hh---cccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCC----
Confidence 211110 1112221 23344444321 1 11 1122343444333221 22 145444443221
Q ss_pred hHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhccccCCcc
Q psy899 273 VIRETFSAAHQYLKPELLNKIRTYISWIQNRGFDIPENLTEIVQKDFVEMRKENKKTDANDLHTLIVLARLEHLRLRPAT 352 (411)
Q Consensus 273 ~~~e~i~~~~~~~~~~~l~~lR~YLa~aR~~~~~i~ee~~~~IqddFV~~R~~~~~it~~dLh~ll~LAR~~~~~~~~~~ 352 (411)
.....+.|+.|+... .+++++ --++++. +. ...+..|+..+++-|-
T Consensus 356 -------------~~~R~~Il~~~~~k~-----~l~~dv---dl~~la~-~t--~g~sgAdI~~i~~eA~---------- 401 (438)
T PTZ00361 356 -------------EKTKRRIFEIHTSKM-----TLAEDV---DLEEFIM-AK--DELSGADIKAICTEAG---------- 401 (438)
T ss_pred -------------HHHHHHHHHHHHhcC-----CCCcCc---CHHHHHH-hc--CCCCHHHHHHHHHHHH----------
Confidence 112344566554422 222221 0122222 21 2478999999998888
Q ss_pred cchhhHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q psy899 353 HYQVDLIRLMSLSHGHSELTEDMWKVALAMEKE 385 (411)
Q Consensus 353 ~~~~~~~rLlalS~G~~~lt~e~W~~a~~LE~~ 385 (411)
++|+-.|...++.+++..|.+--..
T Consensus 402 --------~~Alr~~r~~Vt~~D~~~A~~~v~~ 426 (438)
T PTZ00361 402 --------LLALRERRMKVTQADFRKAKEKVLY 426 (438)
T ss_pred --------HHHHHhcCCccCHHHHHHHHHHHHh
Confidence 8999999999999999998765543
No 66
>PRK08084 DNA replication initiation factor; Provisional
Probab=85.93 E-value=14 Score=35.44 Aligned_cols=33 Identities=9% Similarity=0.032 Sum_probs=23.9
Q ss_pred eEEEEeecCCCCccchhHHHHHHHHHHhcc----ceEEeecc
Q psy899 127 FSLNIFHRDLATSCSDYAQMLYDILKLLVC----KSHYFELN 164 (411)
Q Consensus 127 ~sLnL~g~~~P~~~~~~~s~L~~~l~~L~P----rs~yl~lt 164 (411)
-++-|.| -||.+ |+.|...+..-+- ++.|+++.
T Consensus 46 ~~l~l~G--p~G~G---KThLl~a~~~~~~~~~~~v~y~~~~ 82 (235)
T PRK08084 46 GYIYLWS--REGAG---RSHLLHAACAELSQRGRAVGYVPLD 82 (235)
T ss_pred CeEEEEC--CCCCC---HHHHHHHHHHHHHhCCCeEEEEEHH
Confidence 3788999 89999 9998886654332 36777764
No 67
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=85.84 E-value=17 Score=33.76 Aligned_cols=50 Identities=20% Similarity=0.312 Sum_probs=35.9
Q ss_pred cCCCCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhccccCCcccchhhHHHHHHhhcCCCCCCHHHHHHH
Q psy899 303 RGFDIPENLTEIVQKDFVEMRKENKKTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVA 379 (411)
Q Consensus 303 ~~~~i~ee~~~~IqddFV~~R~~~~~it~~dLh~ll~LAR~~~~~~~~~~~~~~~~~rLlalS~G~~~lt~e~W~~a 379 (411)
....+++++.+.|...+ +=+.++|..++.-+. ..++..|. ++|.+.-+.+
T Consensus 175 ~~~~~~~~~l~~L~~~~--------~gn~r~L~~~l~~~~------------------~~~~~~~~-~i~~~~~~~~ 224 (226)
T TIGR03420 175 RGLQLPDEVADYLLRHG--------SRDMGSLMALLDALD------------------RASLAAKR-KITIPFVKEV 224 (226)
T ss_pred cCCCCCHHHHHHHHHhc--------cCCHHHHHHHHHHHH------------------HHHHHhCC-CCCHHHHHHH
Confidence 45778999888887643 337789999988777 66767664 7887765554
No 68
>TIGR02653 Lon_rel_chp conserved hypothetical protein. This model describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to Pfam model pfam05362, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of E. coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST].
Probab=85.74 E-value=19 Score=40.21 Aligned_cols=237 Identities=16% Similarity=0.171 Sum_probs=129.0
Q ss_pred HHHHHHH--HhhhcCcHHHHHHHHHHHhcceeeecCCceeeeceEEEEe--ecCCCCccchhHHHHHHHHHHhccceEEe
Q psy899 86 KDLKLLL--TQLLMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIF--HRDLATSCSDYAQMLYDILKLLVCKSHYF 161 (411)
Q Consensus 86 ~~Li~~L--a~~l~GD~laAEyLLL~L~S~V~~r~d~~~~lG~~sLnL~--g~~~P~~~~~~~s~L~~~l~~L~Prs~yl 161 (411)
+-|+.++ .|.-+ +.-++-.+|.-|+==|.. + +|++ | =-+++ ||.+++ ++.|.++.+
T Consensus 184 d~LlrSiG~eP~~~-~~r~K~~~L~RliPlVE~---------N--~Nl~ELg--PrgTG---KS~~y~---eiSp~~~li 243 (675)
T TIGR02653 184 DVLLRSVGMEPTNL-ERRTKWHLLTRLIPLVEN---------N--YNLCELG--PRGTG---KSHVYK---ECSPNSILM 243 (675)
T ss_pred HHHHHhcCCCcccc-CHHHHHHHHHhhhhhccc---------c--cceEEEC--CCCCC---cceeee---ccCCceEEE
Confidence 3355554 33333 334555555555544322 2 3444 5 34677 888765 899999999
Q ss_pred ec---cccccccCCcceeecCCCCcccccceeeeCCcEEEEecCCCCCCccccccchHHHHHHHHHHcCccceeecCCcc
Q psy899 162 EL---NVKSLNETTMIPRKDYNTNRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDG 238 (411)
Q Consensus 162 ~l---t~~~LN~~~l~P~kD~~~~~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~~i 238 (411)
++ |.++| --|. .+=.-|.+-+ --.+++||.+ | +......-++.|+.-|++...+
T Consensus 244 SGG~~T~A~L-------Fyn~--~~~~~GlVg~--~D~VaFDEva---~-i~f~d~d~v~imK~YM~sG~Fs-------- 300 (675)
T TIGR02653 244 SGGQTTVANL-------FYNM--STRQIGLVGM--WDVVAFDEVA---G-IEFKDKDGVQIMKDYMASGSFA-------- 300 (675)
T ss_pred ECCccchhHe-------eEEc--CCCceeEEee--ccEEEEeecc---c-cccCCHHHHHHHHHHhhcCccc--------
Confidence 85 55544 1121 1124455443 3479999996 1 1123344678999999988433
Q ss_pred ccccCCCeeEeecCCCCCCcceEEEecCCCCCchhHHHHHHHhhhcCC---h------hhHHHHHHHHHHhhccCCCCCh
Q psy899 239 TFPTDIPVLSLSDTKSMLPSDCHIKLKPDPSCSSVIRETFSAAHQYLK---P------ELLNKIRTYISWIQNRGFDIPE 309 (411)
Q Consensus 239 e~~~Dl~vliLS~gKS~lp~Dl~vpl~~~~~~~~~~~e~i~~~~~~~~---~------~~l~~lR~YLa~aR~~~~~i~e 309 (411)
+||--+-.++.+.+.-..+.+. +++....+.+. + .-++.+--||-... -|+|.+
T Consensus 301 ------------RG~~~~~a~as~vfvGNi~~~v---~~~~k~~~lf~~lP~~~~~DsAflDRiH~yiPGWe--iPk~~~ 363 (675)
T TIGR02653 301 ------------RGKESIEGKASIVFVGNINQSV---ETLVKTSHLFAPFPEAMRIDTAFFDRFHYYIPGWE--IPKMRP 363 (675)
T ss_pred ------------ccccccccceeEEEEcccCCch---HHHhhcccccccCChhhcccchHHHHhhccCcCCc--CccCCH
Confidence 3332222333333321111110 11111111000 0 01222222221111 122332
Q ss_pred h--------HHHHHHHHHHHHhhcC------------CCCCHHHHHHHHHHHhhhccccCCcccchhhHHHHHHhhcCCC
Q psy899 310 N--------LTEIVQKDFVEMRKEN------------KKTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHS 369 (411)
Q Consensus 310 e--------~~~~IqddFV~~R~~~------------~~it~~dLh~ll~LAR~~~~~~~~~~~~~~~~~rLlalS~G~~ 369 (411)
| +.+++.+.+=+||+.+ ..+++||-.+.-+..- | |+=|.|-+.
T Consensus 364 e~~t~~yGl~~DylsE~l~~lR~~~~~~~~~~~~~l~~~~~~RD~~aV~kt~S--------g---------llKLl~P~~ 426 (675)
T TIGR02653 364 EYFTNRYGFIVDYLAEYMREMRKRSFADAIDRFFKLGNNLNQRDVIAVRKTVS--------G---------LLKLLYPDG 426 (675)
T ss_pred HHcccCCcchHHHHHHHHHHHHhhhHHHHHHhhEecCCCCchhhHHHHHHHHH--------H---------HHHHhCCCC
Confidence 2 4567777777777643 2688888888777665 2 777889999
Q ss_pred CCCHHHHHHHHHHHHHHHhccccccccccc
Q psy899 370 ELTEDMWKVALAMEKERKSRPRLGLRKLEE 399 (411)
Q Consensus 370 ~lt~e~W~~a~~LE~~R~~R~~~~~~~~~~ 399 (411)
..|+|..+.+++.=-+-+.|.+.+|.|+-.
T Consensus 427 ~~~~ee~e~~l~~Ale~RrrVkeQl~~i~~ 456 (675)
T TIGR02653 427 EYTKDDVRECLTYAMEGRRRVKEQLKKLGG 456 (675)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999887776777788888877654
No 69
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=85.71 E-value=9.1 Score=39.68 Aligned_cols=189 Identities=13% Similarity=0.214 Sum_probs=96.8
Q ss_pred EEEEeecCCCCccchhHHHHHHHHHHhccceEEeeccccccccCCcceeecCCCCcccccceeeeC---CcEEEEecCC-
Q psy899 128 SLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQLSS---STYLILDEIH- 203 (411)
Q Consensus 128 sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt~~~LN~~~l~P~kD~~~~~L~aG~LQLa~---gT~lvIDEt~- 203 (411)
.+.|.| -||++ |+.+.+.+..-+.. .++.++...+.... -++..+.....++.+. .++++|||.+
T Consensus 167 gvLL~G--ppGtG---KT~lAkaia~~~~~-~~i~v~~~~l~~~~-----~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~ 235 (389)
T PRK03992 167 GVLLYG--PPGTG---KTLLAKAVAHETNA-TFIRVVGSELVQKF-----IGEGARLVRELFELAREKAPSIIFIDEIDA 235 (389)
T ss_pred ceEEEC--CCCCC---hHHHHHHHHHHhCC-CEEEeehHHHhHhh-----ccchHHHHHHHHHHHHhcCCeEEEEechhh
Confidence 479999 99999 99998888765543 23444433332111 1112233334455443 4789999998
Q ss_pred CCCCccc--cccchH-HHHHHHHHHcCccceeecCCccccccCCCeeEeecCCC-----CC---CcceEEEecCCCCCch
Q psy899 204 LQPGQLN--NTGCLN-VKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSDTKS-----ML---PSDCHIKLKPDPSCSS 272 (411)
Q Consensus 204 L~eG~L~--~~Gv~N-~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~gKS-----~l---p~Dl~vpl~~~~~~~~ 272 (411)
+....-+ ..|... ...+..+++. .| .+ .-.-++.++..+.... ++ .||..+.+.+..
T Consensus 236 l~~~r~~~~~~~~~~~~~~l~~lL~~----ld-~~---~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~---- 303 (389)
T PRK03992 236 IAAKRTDSGTSGDREVQRTLMQLLAE----MD-GF---DPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPD---- 303 (389)
T ss_pred hhcccccCCCCccHHHHHHHHHHHHh----cc-cc---CCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCC----
Confidence 3211111 111111 2233344432 11 11 1111333443343222 33 155555554321
Q ss_pred hHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhccccCCcc
Q psy899 273 VIRETFSAAHQYLKPELLNKIRTYISWIQNRGFDIPENLTEIVQKDFVEMRKENKKTDANDLHTLIVLARLEHLRLRPAT 352 (411)
Q Consensus 273 ~~~e~i~~~~~~~~~~~l~~lR~YLa~aR~~~~~i~ee~~~~IqddFV~~R~~~~~it~~dLh~ll~LAR~~~~~~~~~~ 352 (411)
.++..+.|+.|+.... ....++ . ++++ +.....+..|+..+.+-|-
T Consensus 304 -------------~~~R~~Il~~~~~~~~-~~~~~~--~-----~~la---~~t~g~sgadl~~l~~eA~---------- 349 (389)
T PRK03992 304 -------------EEGRLEILKIHTRKMN-LADDVD--L-----EELA---ELTEGASGADLKAICTEAG---------- 349 (389)
T ss_pred -------------HHHHHHHHHHHhccCC-CCCcCC--H-----HHHH---HHcCCCCHHHHHHHHHHHH----------
Confidence 1124455565543221 111111 1 1111 1123578999999999888
Q ss_pred cchhhHHHHHHhhcCCCCCCHHHHHHHHH
Q psy899 353 HYQVDLIRLMSLSHGHSELTEDMWKVALA 381 (411)
Q Consensus 353 ~~~~~~~rLlalS~G~~~lt~e~W~~a~~ 381 (411)
+.|+..+...++.+++..|..
T Consensus 350 --------~~a~~~~~~~i~~~d~~~A~~ 370 (389)
T PRK03992 350 --------MFAIRDDRTEVTMEDFLKAIE 370 (389)
T ss_pred --------HHHHHcCCCCcCHHHHHHHHH
Confidence 899999999999999998754
No 70
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=85.47 E-value=12 Score=39.14 Aligned_cols=38 Identities=11% Similarity=0.114 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHHhhhccccCCcccchhhHHHHHHhhcCCCCCCHHHHHHHHHHH
Q psy899 328 KTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALAME 383 (411)
Q Consensus 328 ~it~~dLh~ll~LAR~~~~~~~~~~~~~~~~~rLlalS~G~~~lt~e~W~~a~~LE 383 (411)
..+..|+..+.+-|. +.|+..|+..++.++|..|.+--
T Consensus 349 g~sgaDI~~l~~eA~------------------~~A~r~~~~~i~~~df~~A~~~v 386 (398)
T PTZ00454 349 KISAADIAAICQEAG------------------MQAVRKNRYVILPKDFEKGYKTV 386 (398)
T ss_pred CCCHHHHHHHHHHHH------------------HHHHHcCCCccCHHHHHHHHHHH
Confidence 578999999999998 89999999999999999997654
No 71
>PRK14709 hypothetical protein; Provisional
Probab=85.21 E-value=26 Score=37.50 Aligned_cols=123 Identities=11% Similarity=0.115 Sum_probs=72.1
Q ss_pred HHHHHHhhhcCcHHHHHHHHHHHhcceeeecCCceeeeceEEEEeecCCCCccchhHHHHHHHHHHhccceEEeeccccc
Q psy899 88 LKLLLTQLLMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKS 167 (411)
Q Consensus 88 Li~~La~~l~GD~laAEyLLL~L~S~V~~r~d~~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt~~~ 167 (411)
...+|...+.||....+||.-.+-.....+.. -..-+-+.| --+++ ||.+.+++..|+... ..+.+++.
T Consensus 172 ~~~fL~~~~~gD~e~~~~lq~~lGy~L~g~~~-----~q~~~~l~G--~G~NG---KSt~~~~i~~llG~~-~~~~~~~~ 240 (469)
T PRK14709 172 WLRFLDEATGGDDELIRFLQQWCGYCLTGDTR-----EHALVFVFG--GGGNG---KSVFLNVLAGILGDY-ATTAAMDT 240 (469)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhhHhhcCCCc-----cceEEEEEC--CCCCc---HHHHHHHHHHHHhhh-cccCCHHH
Confidence 67888888899999888876654444332222 133456678 66778 999999999998752 23344444
Q ss_pred cccCCcceeecCCCCcccccceeeeCCcEEEEecCCCCCCccccccchHHHHHHHHHHcCccceeecCC
Q psy899 168 LNETTMIPRKDYNTNRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFY 236 (411)
Q Consensus 168 LN~~~l~P~kD~~~~~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~ 236 (411)
+.... .+ .. ..+.-.|..-..++.+|+. +| ..-|-..|+.+.---.|...|.|.
T Consensus 241 ~~~~~----~~--~~--~~~lA~L~Gkrlv~~~E~~--~g-----~~~~~~~iK~ltGGD~i~ar~~~k 294 (469)
T PRK14709 241 FTASK----HD--RH--PTDLAMLRGARLVTASETE--EG-----RAWAEARIKQMTGGDTITARFMRQ 294 (469)
T ss_pred Hhhcc----cc--CC--chhhHhhcCCeEEEeecCC--cc-----cccCHHHHHhhhCCCcEEeecccC
Confidence 43221 11 11 1122233334556778874 22 123567777777766677655443
No 72
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=85.08 E-value=6 Score=44.78 Aligned_cols=122 Identities=20% Similarity=0.250 Sum_probs=64.0
Q ss_pred HHHHHHhhhcCcHHHHHHHHHHHhcceeeecCCceeeeceEEEEeecCCCCccchhHHHHHHHHHHhccc-eEEeecccc
Q psy899 88 LKLLLTQLLMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCK-SHYFELNVK 166 (411)
Q Consensus 88 Li~~La~~l~GD~laAEyLLL~L~S~V~~r~d~~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Pr-s~yl~lt~~ 166 (411)
+-..|..-++|.+.+++-++=.+-..- .+.. ..|. ++.|.| -||++ |+.+.+.+...+-+ ...+.+ .
T Consensus 314 ~~~~l~~~~~G~~~~k~~i~~~~~~~~-~~~~---~~~~-~lll~G--ppG~G---KT~lAk~iA~~l~~~~~~i~~--~ 381 (775)
T TIGR00763 314 AKEILDEDHYGLKKVKERILEYLAVQK-LRGK---MKGP-ILCLVG--PPGVG---KTSLGKSIAKALNRKFVRFSL--G 381 (775)
T ss_pred HHHHhhhhcCChHHHHHHHHHHHHHHH-hhcC---CCCc-eEEEEC--CCCCC---HHHHHHHHHHHhcCCeEEEeC--C
Confidence 344566668898888887764433221 1111 2333 789999 99999 89998888766532 222322 2
Q ss_pred ccccC-Ccce-eecCC---CCcccccceee--eCCcEEEEecCC-CCCCccccccchHHHHHHHHHHc
Q psy899 167 SLNET-TMIP-RKDYN---TNRLKSGLLQL--SSSTYLILDEIH-LQPGQLNNTGCLNVKALSSVVNN 226 (411)
Q Consensus 167 ~LN~~-~l~P-~kD~~---~~~L~aG~LQL--a~gT~lvIDEt~-L~eG~L~~~Gv~N~~AL~~li~~ 226 (411)
+.... .+.- .+.|. ..++..+ |.. ..+.+++|||.+ +..+. .| .-..+|-+++..
T Consensus 382 ~~~~~~~i~g~~~~~~g~~~g~i~~~-l~~~~~~~~villDEidk~~~~~---~~-~~~~aLl~~ld~ 444 (775)
T TIGR00763 382 GVRDEAEIRGHRRTYVGAMPGRIIQG-LKKAKTKNPLFLLDEIDKIGSSF---RG-DPASALLEVLDP 444 (775)
T ss_pred CcccHHHHcCCCCceeCCCCchHHHH-HHHhCcCCCEEEEechhhcCCcc---CC-CHHHHHHHhcCH
Confidence 21110 0000 01121 1222221 222 245699999997 44321 11 124678887764
No 73
>CHL00095 clpC Clp protease ATP binding subunit
Probab=84.42 E-value=6.9 Score=44.61 Aligned_cols=157 Identities=13% Similarity=0.119 Sum_probs=92.5
Q ss_pred CCChHHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHhcc-eeeecCCceeeeceEEEEeecCCCCccchhHHHHHHHHHH
Q psy899 75 DISSEEIASTRKDLKLLLTQLLMGDDVAADYLICYLLSR-VYCRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKL 153 (411)
Q Consensus 75 ~is~~~~~~iR~~Li~~La~~l~GD~laAEyLLL~L~S~-V~~r~d~~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~ 153 (411)
.+..++.+.+ ..|-..|...+.|...|.+.+.-++... +-..... .++| ++.+.| -||++ |+.|.+.|+.
T Consensus 491 ~~~~~~~~~l-~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~-~p~~--~~lf~G--p~GvG---Kt~lA~~LA~ 561 (821)
T CHL00095 491 KLTKSESEKL-LHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPN-RPIA--SFLFSG--PTGVG---KTELTKALAS 561 (821)
T ss_pred hhchhHHHHH-HHHHHHhcCcCcChHHHHHHHHHHHHHHhhcccCCC-CCce--EEEEEC--CCCCc---HHHHHHHHHH
Confidence 3444443333 3577788888999999999998777533 2222223 5666 456799 89999 9999998887
Q ss_pred hcc----ceEEeecccccccc-C---Cc--cee--ecCCCCcccccceeeeCCcEEEEecCCCCCCccccccchHHHHHH
Q psy899 154 LVC----KSHYFELNVKSLNE-T---TM--IPR--KDYNTNRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVKALS 221 (411)
Q Consensus 154 L~P----rs~yl~lt~~~LN~-~---~l--~P~--kD~~~~~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~N~~AL~ 221 (411)
.+= ....+.++ .... . .+ .|. ..|+..+.-...+.-.+.+++++||.+ ++...-..+|-
T Consensus 562 ~l~~~~~~~~~~d~s--~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeie-------ka~~~v~~~Ll 632 (821)
T CHL00095 562 YFFGSEDAMIRLDMS--EYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIE-------KAHPDIFNLLL 632 (821)
T ss_pred HhcCCccceEEEEch--hccccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChh-------hCCHHHHHHHH
Confidence 652 23333332 1110 0 01 111 112222222344555667899999995 66667888999
Q ss_pred HHHHcCccceeecCCccccccCCCeeEeec
Q psy899 222 SVVNNQRMSYDFQFYDGTFPTDIPVLSLSD 251 (411)
Q Consensus 222 ~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~ 251 (411)
.+++...+.-. ..+.+.|. +.-+++.|.
T Consensus 633 q~le~g~~~d~-~g~~v~~~-~~i~I~Tsn 660 (821)
T CHL00095 633 QILDDGRLTDS-KGRTIDFK-NTLIIMTSN 660 (821)
T ss_pred HHhccCceecC-CCcEEecC-ceEEEEeCC
Confidence 99999888732 34444442 333344444
No 74
>PRK13342 recombination factor protein RarA; Reviewed
Probab=82.36 E-value=13 Score=38.82 Aligned_cols=85 Identities=14% Similarity=0.089 Sum_probs=44.9
Q ss_pred EEEEeecCCCCccchhHHHHHHHHHHhcc-ceEEeeccccccccCCcceeecCCCCcccccceeeeCCcEEEEecCCCCC
Q psy899 128 SLNIFHRDLATSCSDYAQMLYDILKLLVC-KSHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQLSSSTYLILDEIHLQP 206 (411)
Q Consensus 128 sLnL~g~~~P~~~~~~~s~L~~~l~~L~P-rs~yl~lt~~~LN~~~l~P~kD~~~~~L~aG~LQLa~gT~lvIDEt~L~e 206 (411)
++.|.| -||++ |+.|.+.+..-.. ....+..+..+.... .-.-+ .. ....+...+++++|||.+
T Consensus 38 ~ilL~G--ppGtG---KTtLA~~ia~~~~~~~~~l~a~~~~~~~i--r~ii~----~~-~~~~~~g~~~vL~IDEi~--- 102 (413)
T PRK13342 38 SMILWG--PPGTG---KTTLARIIAGATDAPFEALSAVTSGVKDL--REVIE----EA-RQRRSAGRRTILFIDEIH--- 102 (413)
T ss_pred eEEEEC--CCCCC---HHHHHHHHHHHhCCCEEEEecccccHHHH--HHHHH----HH-HHhhhcCCceEEEEechh---
Confidence 788999 99999 8888888765432 222222111110000 00000 00 001223468899999996
Q ss_pred CccccccchHHHHHHHHHHcCccce
Q psy899 207 GQLNNTGCLNVKALSSVVNNQRMSY 231 (411)
Q Consensus 207 G~L~~~Gv~N~~AL~~li~~Q~v~Y 231 (411)
.+...-..+|...++..++.+
T Consensus 103 ----~l~~~~q~~LL~~le~~~iil 123 (413)
T PRK13342 103 ----RFNKAQQDALLPHVEDGTITL 123 (413)
T ss_pred ----hhCHHHHHHHHHHhhcCcEEE
Confidence 222234457777777665443
No 75
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=82.15 E-value=6.5 Score=41.45 Aligned_cols=129 Identities=17% Similarity=0.213 Sum_probs=79.4
Q ss_pred HHHHHHHHhhhcCcHHHHHHHHHHHh---cceee----e-cCCceeeeceEEEEeecCCCCccchhHHHHHHHHHHhccc
Q psy899 86 KDLKLLLTQLLMGDDVAADYLICYLL---SRVYC----R-DEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCK 157 (411)
Q Consensus 86 ~~Li~~La~~l~GD~laAEyLLL~L~---S~V~~----r-~d~~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Pr 157 (411)
.+|..+|...+.|.+.|++.+...+. .++.. . .++ ..+++-++.|.| -||++ |+.+.+.++..+..
T Consensus 69 ~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~-~~~~~~~iLL~G--P~GsG---KT~lAraLA~~l~~ 142 (413)
T TIGR00382 69 KEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNG-VELSKSNILLIG--PTGSG---KTLLAQTLARILNV 142 (413)
T ss_pred HHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccc-cccCCceEEEEC--CCCcC---HHHHHHHHHHhcCC
Confidence 34777888888999999999988763 22221 1 122 457788999999 99999 98998888766521
Q ss_pred eEEeeccccccccCCcceeecCCC----Ccc------cccceeeeCCcEEEEecCC-CCC------CccccccchHHHHH
Q psy899 158 SHYFELNVKSLNETTMIPRKDYNT----NRL------KSGLLQLSSSTYLILDEIH-LQP------GQLNNTGCLNVKAL 220 (411)
Q Consensus 158 s~yl~lt~~~LN~~~l~P~kD~~~----~~L------~aG~LQLa~gT~lvIDEt~-L~e------G~L~~~Gv~N~~AL 220 (411)
.+.-..... +.+. .|.. +.| ..|.+..+.+|+++|||.+ +.. ..-+-.|..-.++|
T Consensus 143 -pf~~~da~~-----L~~~-gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~L 215 (413)
T TIGR00382 143 -PFAIADATT-----LTEA-GYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQAL 215 (413)
T ss_pred -CeEEechhh-----cccc-ccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHH
Confidence 111112112 2221 1211 111 1344556778899999998 543 12233444567788
Q ss_pred HHHHHcC
Q psy899 221 SSVVNNQ 227 (411)
Q Consensus 221 ~~li~~Q 227 (411)
-.+|+-.
T Consensus 216 L~iLeG~ 222 (413)
T TIGR00382 216 LKIIEGT 222 (413)
T ss_pred HHHhhcc
Confidence 8999643
No 76
>CHL00176 ftsH cell division protein; Validated
Probab=81.13 E-value=32 Score=38.41 Aligned_cols=36 Identities=17% Similarity=0.202 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHHHhhhccccCCcccchhhHHHHHHhhcCCCCCCHHHHHHHHH
Q psy899 328 KTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALA 381 (411)
Q Consensus 328 ~it~~dLh~ll~LAR~~~~~~~~~~~~~~~~~rLlalS~G~~~lt~e~W~~a~~ 381 (411)
..+..||..++.-|. +.|...|...+|.++++.|..
T Consensus 386 G~sgaDL~~lvneAa------------------l~a~r~~~~~It~~dl~~Ai~ 421 (638)
T CHL00176 386 GFSGADLANLLNEAA------------------ILTARRKKATITMKEIDTAID 421 (638)
T ss_pred CCCHHHHHHHHHHHH------------------HHHHHhCCCCcCHHHHHHHHH
Confidence 357778888877666 777777877788887777753
No 77
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=80.54 E-value=8.9 Score=39.75 Aligned_cols=114 Identities=17% Similarity=0.246 Sum_probs=69.1
Q ss_pred eeceEEEEeecCCCCccchhHHHHHHHHHHhccce--EEeeccccccccCC-----cceeec-C-CCCcccccceeeeCC
Q psy899 124 LGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKS--HYFELNVKSLNETT-----MIPRKD-Y-NTNRLKSGLLQLSSS 194 (411)
Q Consensus 124 lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs--~yl~lt~~~LN~~~-----l~P~kD-~-~~~~L~aG~LQLa~g 194 (411)
..+.++.+.| -+|++ ++.+...+..-.++. .++.+....++... |-..+. . +...-..|.+..|+|
T Consensus 164 ~~~~~vli~G--e~GtG---K~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~ 238 (457)
T PRK11361 164 LSQASVLISG--ESGTG---KELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANE 238 (457)
T ss_pred CCCcEEEEEc--CCCcc---HHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEECCC
Confidence 3456889999 89999 888888887766543 23333322222111 000000 0 112235789999999
Q ss_pred cEEEEecCCCCCCccccccchHHHHHHHHHHcCccceeecCCccccccCCCeeEeec
Q psy899 195 TYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSD 251 (411)
Q Consensus 195 T~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~ 251 (411)
|.++|||.+ .+...-...|-.+++...+.- .-..-..+.|+.++..|.
T Consensus 239 gtl~ld~i~-------~l~~~~q~~L~~~l~~~~~~~--~~~~~~~~~~~rii~~t~ 286 (457)
T PRK11361 239 GTLLLDEIG-------EMPLVLQAKLLRILQEREFER--IGGHQTIKVDIRIIAATN 286 (457)
T ss_pred CEEEEechh-------hCCHHHHHHHHHHHhcCcEEe--CCCCceeeeceEEEEeCC
Confidence 999999996 444456777888888775321 122334667777777665
No 78
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=79.44 E-value=72 Score=31.96 Aligned_cols=78 Identities=18% Similarity=0.185 Sum_probs=44.2
Q ss_pred EEEEeecCCCCccchhHHHHHHHHHHhccceEE-eeccccccccCCcceeecCCCCcccccceeeeCCcEEEEecCC-CC
Q psy899 128 SLNIFHRDLATSCSDYAQMLYDILKLLVCKSHY-FELNVKSLNETTMIPRKDYNTNRLKSGLLQLSSSTYLILDEIH-LQ 205 (411)
Q Consensus 128 sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~y-l~lt~~~LN~~~l~P~kD~~~~~L~aG~LQLa~gT~lvIDEt~-L~ 205 (411)
++.|+| -||++ |+.|...+..-+..... +... .+.... .+..=.-.+..+.+++|||.+ +.
T Consensus 53 ~~ll~G--ppG~G---KT~la~~ia~~l~~~~~~~~~~-------~~~~~~-----~l~~~l~~l~~~~vl~IDEi~~l~ 115 (328)
T PRK00080 53 HVLLYG--PPGLG---KTTLANIIANEMGVNIRITSGP-------ALEKPG-----DLAAILTNLEEGDVLFIDEIHRLS 115 (328)
T ss_pred cEEEEC--CCCcc---HHHHHHHHHHHhCCCeEEEecc-------cccChH-----HHHHHHHhcccCCEEEEecHhhcc
Confidence 688999 99999 99998888776644222 1111 111111 111111124678999999997 32
Q ss_pred CCccccccchHHHHHHHHHHcCccc
Q psy899 206 PGQLNNTGCLNVKALSSVVNNQRMS 230 (411)
Q Consensus 206 eG~L~~~Gv~N~~AL~~li~~Q~v~ 230 (411)
. .--..+..+|+...+.
T Consensus 116 ~--------~~~e~l~~~~e~~~~~ 132 (328)
T PRK00080 116 P--------VVEEILYPAMEDFRLD 132 (328)
T ss_pred h--------HHHHHHHHHHHhccee
Confidence 2 1223466677765443
No 79
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=78.94 E-value=14 Score=39.36 Aligned_cols=70 Identities=17% Similarity=0.283 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhhcC------------CCCCHHHHHHHHHHHhhhccccCCcccchhhHHHHHHhhcCCCCCCHHHHHH
Q psy899 311 LTEIVQKDFVEMRKEN------------KKTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKV 378 (411)
Q Consensus 311 ~~~~IqddFV~~R~~~------------~~it~~dLh~ll~LAR~~~~~~~~~~~~~~~~~rLlalS~G~~~lt~e~W~~ 378 (411)
+.+++.+.+=+||+.+ ..++++|-.+.-...- | |+=|.|-+...|+|..+.
T Consensus 366 ~~DylsE~l~~lR~~~~~~~~~~~~~l~~~~~~RD~~aV~kt~S--------g---------llKLL~P~~~~~~ee~~~ 428 (449)
T TIGR02688 366 VVDYFAEALRELREREYADIVDRHFSLSPNLNTRDVIAVKKTFS--------G---------LMKILFPHGTITKEEFTE 428 (449)
T ss_pred hHHHHHHHHHHHHhhHHHHhhhhheecCCCcchhhHHHHHHHHH--------H---------HHHHhCCCCCCCHHHHHH
Confidence 3566777777777642 2688888888777666 2 778889899999999988
Q ss_pred HHHHHHHHHhccccccccc
Q psy899 379 ALAMEKERKSRPRLGLRKL 397 (411)
Q Consensus 379 a~~LE~~R~~R~~~~~~~~ 397 (411)
+++.=-+-+.|.+.++.++
T Consensus 429 ~l~~Ale~RrrVkeql~~i 447 (449)
T TIGR02688 429 CLEPALEGRQRVKDQLHKI 447 (449)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 8876666677777777654
No 80
>PHA02244 ATPase-like protein
Probab=77.14 E-value=9.6 Score=39.88 Aligned_cols=109 Identities=15% Similarity=0.156 Sum_probs=64.5
Q ss_pred ceEEEEeecCCCCccchhHHHHHHHHHHhccceEEeeccccccccCCcceeecCCCCccccccee--eeCCcEEEEecCC
Q psy899 126 KFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQ--LSSSTYLILDEIH 203 (411)
Q Consensus 126 ~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt~~~LN~~~l~P~kD~~~~~L~aG~LQ--La~gT~lvIDEt~ 203 (411)
..++.|.| -||++ |+.|...+...+-+- ++.++ ..+....+.-..+ ....++.|.|- +.+|+.++|||.+
T Consensus 119 ~~PVLL~G--ppGtG---KTtLA~aLA~~lg~p-fv~In-~l~d~~~L~G~i~-~~g~~~dgpLl~A~~~GgvLiLDEId 190 (383)
T PHA02244 119 NIPVFLKG--GAGSG---KNHIAEQIAEALDLD-FYFMN-AIMDEFELKGFID-ANGKFHETPFYEAFKKGGLFFIDEID 190 (383)
T ss_pred CCCEEEEC--CCCCC---HHHHHHHHHHHhCCC-EEEEe-cChHHHhhccccc-ccccccchHHHHHhhcCCEEEEeCcC
Confidence 35789999 99999 999988887764432 22222 0011111110001 11233434431 5789999999996
Q ss_pred CCCCccccccchHHHHHHHHHHcCccceeecCCccccccCCCeeEeec
Q psy899 204 LQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSD 251 (411)
Q Consensus 204 L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~ 251 (411)
.....-...|+.+++.+ .|+.....+...-|..+++.|.
T Consensus 191 -------~a~p~vq~~L~~lLd~r--~l~l~g~~i~~h~~FRlIATsN 229 (383)
T PHA02244 191 -------ASIPEALIIINSAIANK--FFDFADERVTAHEDFRVISAGN 229 (383)
T ss_pred -------cCCHHHHHHHHHHhccC--eEEecCcEEecCCCEEEEEeeC
Confidence 33345578899999876 4454555555566777777666
No 81
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=76.64 E-value=78 Score=30.91 Aligned_cols=78 Identities=19% Similarity=0.195 Sum_probs=44.2
Q ss_pred EEEEeecCCCCccchhHHHHHHHHHHhccce-EEeeccccccccCCcceeecCCCCcccccceeeeCCcEEEEecCC-CC
Q psy899 128 SLNIFHRDLATSCSDYAQMLYDILKLLVCKS-HYFELNVKSLNETTMIPRKDYNTNRLKSGLLQLSSSTYLILDEIH-LQ 205 (411)
Q Consensus 128 sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs-~yl~lt~~~LN~~~l~P~kD~~~~~L~aG~LQLa~gT~lvIDEt~-L~ 205 (411)
++.|.| -||++ |+.|...+..-+... .+...+ ...+. ..+..=.-.+..+..++|||.+ +.
T Consensus 32 ~~ll~G--p~G~G---KT~la~~ia~~~~~~~~~~~~~-------~~~~~-----~~l~~~l~~~~~~~vl~iDEi~~l~ 94 (305)
T TIGR00635 32 HLLLYG--PPGLG---KTTLAHIIANEMGVNLKITSGP-------ALEKP-----GDLAAILTNLEEGDVLFIDEIHRLS 94 (305)
T ss_pred eEEEEC--CCCCC---HHHHHHHHHHHhCCCEEEeccc-------hhcCc-----hhHHHHHHhcccCCEEEEehHhhhC
Confidence 688999 99999 999888776654322 111111 10111 1111111124567899999997 43
Q ss_pred CCccccccchHHHHHHHHHHcCccc
Q psy899 206 PGQLNNTGCLNVKALSSVVNNQRMS 230 (411)
Q Consensus 206 eG~L~~~Gv~N~~AL~~li~~Q~v~ 230 (411)
+ +-..+|.++|+...+.
T Consensus 95 ~--------~~~e~l~~~~~~~~~~ 111 (305)
T TIGR00635 95 P--------AVEELLYPAMEDFRLD 111 (305)
T ss_pred H--------HHHHHhhHHHhhhhee
Confidence 3 2345677777765543
No 82
>CHL00195 ycf46 Ycf46; Provisional
Probab=75.05 E-value=46 Score=35.93 Aligned_cols=53 Identities=11% Similarity=-0.030 Sum_probs=31.4
Q ss_pred hcCcHHHHHHHHHH--HhcceeeecCCceeeeceEEEEeecCCCCccchhHHHHHHHHHHhcc
Q psy899 96 LMGDDVAADYLICY--LLSRVYCRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVC 156 (411)
Q Consensus 96 l~GD~laAEyLLL~--L~S~V~~r~d~~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~P 156 (411)
++|-..+++++--. .++.-..+. | .. -.-.+.|.| -||++ |+.+.+.++.-.-
T Consensus 230 vgGl~~lK~~l~~~~~~~~~~~~~~-g-l~-~pkGILL~G--PpGTG---KTllAkaiA~e~~ 284 (489)
T CHL00195 230 IGGLDNLKDWLKKRSTSFSKQASNY-G-LP-TPRGLLLVG--IQGTG---KSLTAKAIANDWQ 284 (489)
T ss_pred hcCHHHHHHHHHHHHHHhhHHHHhc-C-CC-CCceEEEEC--CCCCc---HHHHHHHHHHHhC
Confidence 56767777766532 222111111 1 11 112489999 99999 9999888877653
No 83
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=74.34 E-value=8.6 Score=31.60 Aligned_cols=88 Identities=17% Similarity=0.085 Sum_probs=46.9
Q ss_pred eEEEEeecCCCCccchhHHHHHHHHHHhcc----ceEEeeccccccccCCcceeecC-CCCcccccceeeeCCcEEEEec
Q psy899 127 FSLNIFHRDLATSCSDYAQMLYDILKLLVC----KSHYFELNVKSLNETTMIPRKDY-NTNRLKSGLLQLSSSTYLILDE 201 (411)
Q Consensus 127 ~sLnL~g~~~P~~~~~~~s~L~~~l~~L~P----rs~yl~lt~~~LN~~~l~P~kD~-~~~~L~aG~LQLa~gT~lvIDE 201 (411)
-++.|+| -||++ |+.|.+.+...++ ...+++.+ ............. .............+.+.++|||
T Consensus 20 ~~v~i~G--~~G~G---KT~l~~~i~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe 92 (151)
T cd00009 20 KNLLLYG--PPGTG---KTTLARAIANELFRPGAPFLYLNAS--DLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDE 92 (151)
T ss_pred CeEEEEC--CCCCC---HHHHHHHHHHHhhcCCCCeEEEehh--hhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeC
Confidence 4688999 99999 8888888877653 22232221 1111000000000 0001122333456778999999
Q ss_pred CCCCCCccccccchHHHHHHHHHHcCc
Q psy899 202 IHLQPGQLNNTGCLNVKALSSVVNNQR 228 (411)
Q Consensus 202 t~L~eG~L~~~Gv~N~~AL~~li~~Q~ 228 (411)
.+ .+.......+..++++..
T Consensus 93 ~~-------~~~~~~~~~~~~~i~~~~ 112 (151)
T cd00009 93 ID-------SLSRGAQNALLRVLETLN 112 (151)
T ss_pred hh-------hhhHHHHHHHHHHHHhcC
Confidence 96 223345566777776653
No 84
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=72.60 E-value=43 Score=35.75 Aligned_cols=23 Identities=4% Similarity=-0.065 Sum_probs=19.6
Q ss_pred EEEEeecCCCCccchhHHHHHHHHHHhc
Q psy899 128 SLNIFHRDLATSCSDYAQMLYDILKLLV 155 (411)
Q Consensus 128 sLnL~g~~~P~~~~~~~s~L~~~l~~L~ 155 (411)
.+.|.| -||++ |+.|.+.+..-+
T Consensus 90 giLL~G--ppGtG---KT~la~alA~~~ 112 (495)
T TIGR01241 90 GVLLVG--PPGTG---KTLLAKAVAGEA 112 (495)
T ss_pred cEEEEC--CCCCC---HHHHHHHHHHHc
Confidence 478999 99999 999998887664
No 85
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=71.51 E-value=13 Score=36.13 Aligned_cols=119 Identities=15% Similarity=0.195 Sum_probs=74.4
Q ss_pred EEeecCCCCccchhHHHHHHHHHHhccceEEeeccccccccCCcceeecCC-CCcccccceeeeCCcEEEEecCC-CCCC
Q psy899 130 NIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDYN-TNRLKSGLLQLSSSTYLILDEIH-LQPG 207 (411)
Q Consensus 130 nL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt~~~LN~~~l~P~kD~~-~~~L~aG~LQLa~gT~lvIDEt~-L~eG 207 (411)
.+.| -++++ |....+.+...+=+-.++=---+ ..|+. -.++-.|+.| .|.-+|+||.+ |+.+
T Consensus 36 ~~~G--pagtG---Ktetik~La~~lG~~~~vfnc~~---------~~~~~~l~ril~G~~~--~GaW~cfdefnrl~~~ 99 (231)
T PF12774_consen 36 ALSG--PAGTG---KTETIKDLARALGRFVVVFNCSE---------QMDYQSLSRILKGLAQ--SGAWLCFDEFNRLSEE 99 (231)
T ss_dssp EEES--STTSS---HHHHHHHHHHCTT--EEEEETTS---------SS-HHHHHHHHHHHHH--HT-EEEEETCCCSSHH
T ss_pred CCcC--CCCCC---chhHHHHHHHHhCCeEEEecccc---------cccHHHHHHHHHHHhh--cCchhhhhhhhhhhHH
Confidence 5677 66778 99998888888777766522111 12221 1567889988 48999999998 7777
Q ss_pred ccccccchHHHHHHHHHHcCccceeecCCccccccCCCeeEeec----CCCCCCcceEEEec
Q psy899 208 QLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSD----TKSMLPSDCHIKLK 265 (411)
Q Consensus 208 ~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~----gKS~lp~Dl~vpl~ 265 (411)
.|.-.. +.+++|++++....-.+.|....+.++-+..+.+... |++-||.++.-..+
T Consensus 100 vLS~i~-~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lFR 160 (231)
T PF12774_consen 100 VLSVIS-QQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALFR 160 (231)
T ss_dssp HHHHHH-HHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTEE
T ss_pred HHHHHH-HHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHhh
Confidence 766665 4588888888888888888777777776666555543 34566655443333
No 86
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=70.99 E-value=91 Score=29.12 Aligned_cols=52 Identities=19% Similarity=0.350 Sum_probs=33.3
Q ss_pred ccCCCCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhccccCCcccchhhHHHHHHhhcCCCCCCHHHHHHHH
Q psy899 302 NRGFDIPENLTEIVQKDFVEMRKENKKTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVAL 380 (411)
Q Consensus 302 ~~~~~i~ee~~~~IqddFV~~R~~~~~it~~dLh~ll~LAR~~~~~~~~~~~~~~~~~rLlalS~G~~~lt~e~W~~a~ 380 (411)
...+.+++++.+++.+.+ +=+.++|..++.--. ..|+..| ..+|...-+.+.
T Consensus 172 ~~~v~l~~~al~~L~~~~--------~gn~~~l~~~l~~l~------------------~~~~~~~-~~i~~~~~~~~l 223 (227)
T PRK08903 172 ERGLQLADEVPDYLLTHF--------RRDMPSLMALLDALD------------------RYSLEQK-RPVTLPLLREML 223 (227)
T ss_pred HcCCCCCHHHHHHHHHhc--------cCCHHHHHHHHHHHH------------------HHHHHhC-CCCCHHHHHHHH
Confidence 456889999998886632 225667776665333 3455555 588877666654
No 87
>PF13335 Mg_chelatase_2: Magnesium chelatase, subunit ChlI
Probab=70.71 E-value=19 Score=30.20 Aligned_cols=55 Identities=15% Similarity=0.246 Sum_probs=44.6
Q ss_pred CCCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhccccCCcccchhhHHHHHHhhcCCCCCCHHHHHHHHHH
Q psy899 305 FDIPENLTEIVQKDFVEMRKENKKTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALAM 382 (411)
Q Consensus 305 ~~i~ee~~~~IqddFV~~R~~~~~it~~dLh~ll~LAR~~~~~~~~~~~~~~~~~rLlalS~G~~~lt~e~W~~a~~L 382 (411)
..++++..+.+++.|-. ..++.+-+|+++++|| -+|=..|...++.+|-..|..+
T Consensus 41 ~~l~~~~~~~l~~~~~~-----~~lS~R~~~rilrvAR------------------TIADL~~~~~I~~~hi~EAl~y 95 (96)
T PF13335_consen 41 CPLSSEAKKLLEQAAEK-----LNLSARGYHRILRVAR------------------TIADLEGSERITREHIAEALSY 95 (96)
T ss_pred cCCCHHHHHHHHHHHHH-----cCcCHHHHHHHHHHHH------------------HHHhHcCCCCCCHHHHHHHHhC
Confidence 34667777777665532 2589999999999999 8999999999999999888753
No 88
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=69.18 E-value=99 Score=29.37 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=19.1
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHH
Q psy899 359 IRLMSLSHGHSELTEDMWKVALA 381 (411)
Q Consensus 359 ~rLlalS~G~~~lt~e~W~~a~~ 381 (411)
+.+.|...|...++.++++.+..
T Consensus 242 ~~~~a~~~~~~~i~~~~v~~~~~ 264 (269)
T TIGR03015 242 LLLSAFLEEKREIGGEEVREVIA 264 (269)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHH
Confidence 33777889999999999998864
No 89
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=67.92 E-value=1.3e+02 Score=30.42 Aligned_cols=53 Identities=17% Similarity=0.220 Sum_probs=32.1
Q ss_pred CCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhccccCCcccchhhHHHHHHhhcCCCCCCHHHHHHHHH
Q psy899 306 DIPENLTEIVQKDFVEMRKENKKTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALA 381 (411)
Q Consensus 306 ~i~ee~~~~IqddFV~~R~~~~~it~~dLh~ll~LAR~~~~~~~~~~~~~~~~~rLlalS~G~~~lt~e~W~~a~~ 381 (411)
.+++++.+.|.+..-. ..+ ..+....++.-|- ..|...|...++.+++..|..
T Consensus 228 ~~~~~~l~~i~~~~~~--~~G---d~r~a~~ll~~a~------------------~~a~~~~~~~I~~~~v~~a~~ 280 (394)
T PRK00411 228 VVDDEVLDLIADLTAR--EHG---DARVAIDLLRRAG------------------LIAEREGSRKVTEEDVRKAYE 280 (394)
T ss_pred CCCHhHHHHHHHHHHH--hcC---cHHHHHHHHHHHH------------------HHHHHcCCCCcCHHHHHHHHH
Confidence 5778887777663321 111 2333344444443 467778888899998887775
No 90
>PRK06893 DNA replication initiation factor; Validated
Probab=67.13 E-value=1.2e+02 Score=28.88 Aligned_cols=61 Identities=15% Similarity=0.137 Sum_probs=38.8
Q ss_pred eEEEEeecCCCCccchhHHHHHHHHHHhc----cceEEeeccccccccCCcceeecCCCCcccccceeeeCCcEEEEecC
Q psy899 127 FSLNIFHRDLATSCSDYAQMLYDILKLLV----CKSHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQLSSSTYLILDEI 202 (411)
Q Consensus 127 ~sLnL~g~~~P~~~~~~~s~L~~~l~~L~----Prs~yl~lt~~~LN~~~l~P~kD~~~~~L~aG~LQLa~gT~lvIDEt 202 (411)
-++-|.| -||++ |+.|...+.+-+ +.+.|++++... .+.+ .+.. .+.+...++|||.
T Consensus 40 ~~l~l~G--~~G~G---KThL~~ai~~~~~~~~~~~~y~~~~~~~----~~~~-------~~~~---~~~~~dlLilDDi 100 (229)
T PRK06893 40 PFFYIWG--GKSSG---KSHLLKAVSNHYLLNQRTAIYIPLSKSQ----YFSP-------AVLE---NLEQQDLVCLDDL 100 (229)
T ss_pred CeEEEEC--CCCCC---HHHHHHHHHHHHHHcCCCeEEeeHHHhh----hhhH-------HHHh---hcccCCEEEEeCh
Confidence 4578999 99999 999988876543 677888874210 0000 1111 1235578999999
Q ss_pred CCCC
Q psy899 203 HLQP 206 (411)
Q Consensus 203 ~L~e 206 (411)
..-.
T Consensus 101 ~~~~ 104 (229)
T PRK06893 101 QAVI 104 (229)
T ss_pred hhhc
Confidence 7443
No 91
>KOG2170|consensus
Probab=65.62 E-value=3.5 Score=42.05 Aligned_cols=145 Identities=17% Similarity=0.196 Sum_probs=87.2
Q ss_pred HHHHHHHHHhhhcCcHHHHHHHHHHHhcceeeecCCceeeeceEEEEeecCCCCccchhHHHH-HHHHHHhccceEEeec
Q psy899 85 RKDLKLLLTQLLMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSDYAQML-YDILKLLVCKSHYFEL 163 (411)
Q Consensus 85 R~~Li~~La~~l~GD~laAEyLLL~L~S~V~~r~d~~~~lG~~sLnL~g~~~P~~~~~~~s~L-~~~l~~L~Prs~yl~l 163 (411)
++.|-.-|+..|+|..+|++-++=.+-|-+++.. +.-.+-|-+.| -+|+++.|.+++ .+.+-..-=+|-|+-.
T Consensus 73 ~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n~~----p~KPLvLSfHG--~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~ 146 (344)
T KOG2170|consen 73 LDGLEKDLARALFGQHLAKQLVVNALKSHWANPN----PRKPLVLSFHG--WTGTGKNYVAEIIAENLYRGGLRSPFVHH 146 (344)
T ss_pred chHHHHHHHHHhhchHHHHHHHHHHHHHHhcCCC----CCCCeEEEecC--CCCCchhHHHHHHHHHHHhccccchhHHH
Confidence 3457778899999999999999988888866532 34467788889 999996665444 2233222223333332
Q ss_pred cccccccCCcceeecCCC--CcccccceeeeCCcEEEEecCCCCCCccccccchHHHHHHHHHHcCccceeecCCccccc
Q psy899 164 NVKSLNETTMIPRKDYNT--NRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFP 241 (411)
Q Consensus 164 t~~~LN~~~l~P~kD~~~--~~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~~ie~~ 241 (411)
-+++++=.--.-..||.. ..=..|.+|.-..+.+|+||.+ +|-..=+++|+-.+. ||+.-.-
T Consensus 147 fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~D-------Kmp~gLld~lkpfLd---------yyp~v~g 210 (344)
T KOG2170|consen 147 FVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVD-------KLPPGLLDVLKPFLD---------YYPQVSG 210 (344)
T ss_pred hhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhh-------hcCHhHHHHHhhhhc---------ccccccc
Confidence 222221111001123311 1224688888889999999996 444456777777664 3444444
Q ss_pred cCCC---eeEeec
Q psy899 242 TDIP---VLSLSD 251 (411)
Q Consensus 242 ~Dl~---vliLS~ 251 (411)
+|.+ ++.||.
T Consensus 211 v~frkaIFIfLSN 223 (344)
T KOG2170|consen 211 VDFRKAIFIFLSN 223 (344)
T ss_pred ccccceEEEEEcC
Confidence 4443 556664
No 92
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=63.38 E-value=11 Score=41.14 Aligned_cols=112 Identities=14% Similarity=0.139 Sum_probs=68.8
Q ss_pred eceEEEEeecCCCCccchhHHHHHHHHHHhccceEEeeccccccccCC-------cceeecC-CC---CcccccceeeeC
Q psy899 125 GKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETT-------MIPRKDY-NT---NRLKSGLLQLSS 193 (411)
Q Consensus 125 G~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt~~~LN~~~-------l~P~kD~-~~---~~L~aG~LQLa~ 193 (411)
-+.++.|.| -.|++ |+-+.+.+.+..||..- |+-.-|+.+.+ +.=...+ -| ..=..|.+++|+
T Consensus 267 tdstVLi~G--ESGTG---KElfA~~IH~~S~R~~~-PFIaiNCaAiPe~LlESELFGye~GAFTGA~~~GK~GlfE~A~ 340 (560)
T COG3829 267 TDSTVLILG--ESGTG---KELFARAIHNLSPRANG-PFIAINCAAIPETLLESELFGYEKGAFTGASKGGKPGLFELAN 340 (560)
T ss_pred CCCcEEEec--CCCcc---HHHHHHHHHhcCcccCC-CeEEEecccCCHHHHHHHHhCcCCccccccccCCCCcceeecc
Confidence 356889999 99999 99999999999999763 33222222211 0000000 01 111689999999
Q ss_pred CcEEEEecCCCCCCccccccchHHHHHHHHHHcCccceeecCCccccccCCCeeEeec
Q psy899 194 STYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSD 251 (411)
Q Consensus 194 gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~ 251 (411)
||.+.+||+. +|...=-.-|--+++.-++.= =-.+-..++|++++--+.
T Consensus 341 gGTLFLDEIg-------empl~LQaKLLRVLQEkei~r--vG~t~~~~vDVRIIAATN 389 (560)
T COG3829 341 GGTLFLDEIG-------EMPLPLQAKLLRVLQEKEIER--VGGTKPIPVDVRIIAATN 389 (560)
T ss_pred CCeEEehhhc-------cCCHHHHHHHHHHHhhceEEe--cCCCCceeeEEEEEeccC
Confidence 9999999996 444444444555555443321 123556777777766554
No 93
>PF13337 Lon_2: Putative ATP-dependent Lon protease
Probab=62.58 E-value=1.4e+02 Score=32.11 Aligned_cols=209 Identities=14% Similarity=0.166 Sum_probs=119.5
Q ss_pred CCCccchhHHHHHHHHHHhccceEEeec---cccccccCCcceeecCCCCcccccceeeeCCcEEEEecCCCCCCccccc
Q psy899 136 LATSCSDYAQMLYDILKLLVCKSHYFEL---NVKSLNETTMIPRKDYNTNRLKSGLLQLSSSTYLILDEIHLQPGQLNNT 212 (411)
Q Consensus 136 ~P~~~~~~~s~L~~~l~~L~Prs~yl~l---t~~~LN~~~l~P~kD~~~~~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~ 212 (411)
=.+++ ||.+ .+++.|.++.+++ |.++| .-|..++ ..|++-.- -.+++||.+= ++-.
T Consensus 216 PrGTG---KS~v---y~eiSp~~~liSGG~~T~A~L-------Fyn~~~~--~~GlV~~~--D~VafDEv~~----i~f~ 274 (457)
T PF13337_consen 216 PRGTG---KSYV---YKEISPYGILISGGQVTVAKL-------FYNMSTG--QIGLVGRW--DVVAFDEVAG----IKFK 274 (457)
T ss_pred CCCCC---ceee---hhhcCcccEEEECCCcchHHh-------eeeccCC--cceeeeec--cEEEEEeccC----cccC
Confidence 45777 7776 4578888998874 55554 2222222 56665544 4799999971 1122
Q ss_pred cchHHHHHHHHHHcCccceeecCCccccccCCCeeEeecCCCCCCcceEEEecCCCCCchhHHHHHHHhhhcCChhhHHH
Q psy899 213 GCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSDTKSMLPSDCHIKLKPDPSCSSVIRETFSAAHQYLKPELLNK 292 (411)
Q Consensus 213 Gv~N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~gKS~lp~Dl~vpl~~~~~~~~~~~e~i~~~~~~~~~~~l~~ 292 (411)
...-++.|+.-|++..-+=. .-+...+.+++.+-. .+..+.-..... ..++.. ..... +..-++-
T Consensus 275 d~d~i~imK~YMesG~fsRG----~~~i~a~as~vf~GN------i~~~v~~~~~~~--~lf~~l-P~~~~--DsAflDR 339 (457)
T PF13337_consen 275 DKDEIQIMKDYMESGSFSRG----KEEINADASMVFVGN------INQSVENMLKTS--HLFEPL-PEEMR--DSAFLDR 339 (457)
T ss_pred ChHHHHHHHHHHhccceeec----ccccccceeEEEEcC------cCCcchhccccc--hhhhhc-CHHHH--HHHHHhH
Confidence 24455888888888854432 235666666666665 343222211111 100000 00000 0012222
Q ss_pred HHHHHHHhhccCCCCChh--------HHHHHHHHHHHHhhcC------------CCCCHHHHHHHHHHHhhhccccCCcc
Q psy899 293 IRTYISWIQNRGFDIPEN--------LTEIVQKDFVEMRKEN------------KKTDANDLHTLIVLARLEHLRLRPAT 352 (411)
Q Consensus 293 lR~YLa~aR~~~~~i~ee--------~~~~IqddFV~~R~~~------------~~it~~dLh~ll~LAR~~~~~~~~~~ 352 (411)
+--||-... -|+|.++ +.+++.+.+=+||+.+ ..++.+|-.+.-+++..
T Consensus 340 iH~~iPGWe--iPk~~~e~~t~~~gl~~Dy~aE~l~~LR~~~~~~~~~~~~~lg~~~~~RD~~AV~kt~Sg--------- 408 (457)
T PF13337_consen 340 IHGYIPGWE--IPKIRPEMFTNGYGLIVDYFAEILHELRKQSYSDAVDKYFKLGSNLSQRDTKAVKKTVSG--------- 408 (457)
T ss_pred hheeccCcc--ccccCHHHccCCceeeHHHHHHHHHHHHHHHHHHHHHhhEeeCCCcchhhHHHHHHHHHH---------
Confidence 222222111 1222222 3456666666666643 25889999888887773
Q ss_pred cchhhHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhccccccccccc
Q psy899 353 HYQVDLIRLMSLSHGHSELTEDMWKVALAMEKERKSRPRLGLRKLEE 399 (411)
Q Consensus 353 ~~~~~~~rLlalS~G~~~lt~e~W~~a~~LE~~R~~R~~~~~~~~~~ 399 (411)
++=|-|-+...|+|.-+.+++.=.+-+.|.+.++.++-.
T Consensus 409 --------llKLL~P~~~~~~ee~~~~l~~A~e~R~rVkeQl~~i~~ 447 (457)
T PF13337_consen 409 --------LLKLLFPHGEFTKEELEECLRPALEMRRRVKEQLKRIDP 447 (457)
T ss_pred --------HHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 777889999999999888888777778888888877654
No 94
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=61.07 E-value=75 Score=36.09 Aligned_cols=160 Identities=19% Similarity=0.183 Sum_probs=79.9
Q ss_pred EEEEeecCCCCccchhHHHHHHHHHHhccceEEeeccccccccCCcceeecCCCCccccc--ce-eeeCCcEEEEecCC-
Q psy899 128 SLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDYNTNRLKSG--LL-QLSSSTYLILDEIH- 203 (411)
Q Consensus 128 sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt~~~LN~~~l~P~kD~~~~~L~aG--~L-QLa~gT~lvIDEt~- 203 (411)
|+.|.| -||++ |+.|...+..-.. ..++.+. ... ...++- ...++.. .+ ....++.++|||.+
T Consensus 54 slLL~G--PpGtG---KTTLA~aIA~~~~-~~f~~ln-----a~~-~~i~di-r~~i~~a~~~l~~~~~~~IL~IDEIh~ 120 (725)
T PRK13341 54 SLILYG--PPGVG---KTTLARIIANHTR-AHFSSLN-----AVL-AGVKDL-RAEVDRAKERLERHGKRTILFIDEVHR 120 (725)
T ss_pred eEEEEC--CCCCC---HHHHHHHHHHHhc-Ccceeeh-----hhh-hhhHHH-HHHHHHHHHHhhhcCCceEEEEeChhh
Confidence 788999 99999 9998888876543 2232222 110 111110 0011110 01 12357899999996
Q ss_pred CCCCccccccchHHHHHHHHHHcCccceeecCCccccccCCCeeEeecCCCCCCcceEEEecCCCCCchhHHHHHHHhhh
Q psy899 204 LQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSDTKSMLPSDCHIKLKPDPSCSSVIRETFSAAHQ 283 (411)
Q Consensus 204 L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~gKS~lp~Dl~vpl~~~~~~~~~~~e~i~~~~~ 283 (411)
|.. .-..+|...++...+-+-.-... .....++..++|| +. .|.+.+-.
T Consensus 121 Ln~--------~qQdaLL~~lE~g~IiLI~aTTe-np~~~l~~aL~SR------~~-v~~l~pLs--------------- 169 (725)
T PRK13341 121 FNK--------AQQDALLPWVENGTITLIGATTE-NPYFEVNKALVSR------SR-LFRLKSLS--------------- 169 (725)
T ss_pred CCH--------HHHHHHHHHhcCceEEEEEecCC-ChHhhhhhHhhcc------cc-ceecCCCC---------------
Confidence 322 22456777777766544321110 0001233455566 22 23333221
Q ss_pred cCChhhHHHHHHHHHHh-h---ccCCCCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q psy899 284 YLKPELLNKIRTYISWI-Q---NRGFDIPENLTEIVQKDFVEMRKENKKTDANDLHTLIVLA 341 (411)
Q Consensus 284 ~~~~~~l~~lR~YLa~a-R---~~~~~i~ee~~~~IqddFV~~R~~~~~it~~dLh~ll~LA 341 (411)
.++....+++++... + ...+.+++++.++|.+.. +=+.+++...|..+
T Consensus 170 --~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s--------~GD~R~lln~Le~a 221 (725)
T PRK13341 170 --DEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVA--------NGDARSLLNALELA 221 (725)
T ss_pred --HHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhC--------CCCHHHHHHHHHHH
Confidence 111333455555421 1 235788999888885521 12567777666543
No 95
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=60.90 E-value=1.8e+02 Score=28.99 Aligned_cols=55 Identities=16% Similarity=0.149 Sum_probs=32.6
Q ss_pred CCCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhccccCCcccchhhHHHHHHhhcCCCCCCHHHHHHHHHH
Q psy899 305 FDIPENLTEIVQKDFVEMRKENKKTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALAM 382 (411)
Q Consensus 305 ~~i~ee~~~~IqddFV~~R~~~~~it~~dLh~ll~LAR~~~~~~~~~~~~~~~~~rLlalS~G~~~lt~e~W~~a~~L 382 (411)
-.+++++.+++.+- +. +..+ ..+..-.++..|- .+|...|...+|.++...|...
T Consensus 219 ~~~~~~~l~~i~~~-~~-~~~G---d~R~al~~l~~a~------------------~~a~~~~~~~it~~~v~~a~~~ 273 (365)
T TIGR02928 219 GVLDDGVIPLCAAL-AA-QEHG---DARKAIDLLRVAG------------------EIAEREGAERVTEDHVEKAQEK 273 (365)
T ss_pred CCCChhHHHHHHHH-HH-HhcC---CHHHHHHHHHHHH------------------HHHHHcCCCCCCHHHHHHHHHH
Confidence 34777777766552 11 1111 2344444454444 5677888888999998877543
No 96
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=55.82 E-value=18 Score=38.07 Aligned_cols=144 Identities=16% Similarity=0.221 Sum_probs=81.8
Q ss_pred HHHHHHHHhhhcCcHHHHHHHHHHHhcceeeecCCceeeeceEEEEeecCCCCccchhHHHHHHHHHHhccc---eEEee
Q psy899 86 KDLKLLLTQLLMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCK---SHYFE 162 (411)
Q Consensus 86 ~~Li~~La~~l~GD~laAEyLLL~L~S~V~~r~d~~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Pr---s~yl~ 162 (411)
..+.......|-|+.-..+-++=++-. .+-...|+.|.| -+|++ |+.+...|..+..+ .-++.
T Consensus 70 ~~~~~~~~~~LIG~~~~~~~~~eqik~---------~ap~~~~vLi~G--etGtG---Kel~A~~iH~~s~r~~~~PFI~ 135 (403)
T COG1221 70 PYLKSEALDDLIGESPSLQELREQIKA---------YAPSGLPVLIIG--ETGTG---KELFARLIHALSARRAEAPFIA 135 (403)
T ss_pred hhccchhhhhhhccCHHHHHHHHHHHh---------hCCCCCcEEEec--CCCcc---HHHHHHHHHHhhhcccCCCEEE
Confidence 334444455555666665555544433 334567899999 99999 66665555555555 33443
Q ss_pred ccccccccCC----cceeec--C-CCCcccccceeeeCCcEEEEecCCCCCCccccccchHHHHHHHHHHcCccceeecC
Q psy899 163 LNVKSLNETT----MIPRKD--Y-NTNRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQF 235 (411)
Q Consensus 163 lt~~~LN~~~----l~P~kD--~-~~~~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y 235 (411)
+.-+.++... +.=.+. + +...=.+|.+..||||.|.+||.. .+-.+=...|-.+|+...+.=- .-
T Consensus 136 ~NCa~~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~-------~LP~~~Q~kLl~~le~g~~~rv-G~ 207 (403)
T COG1221 136 FNCAAYSENLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIH-------RLPPEGQEKLLRVLEEGEYRRV-GG 207 (403)
T ss_pred EEHHHhCcCHHHHHHhccccceeecccCCcCchheecCCCEEehhhhh-------hCCHhHHHHHHHHHHcCceEec-CC
Confidence 3222222211 111111 1 123346899999999999999996 3334455667777776643311 11
Q ss_pred CccccccCCCeeEeecC
Q psy899 236 YDGTFPTDIPVLSLSDT 252 (411)
Q Consensus 236 ~~ie~~~Dl~vliLS~g 252 (411)
+-+.++|++++--+..
T Consensus 208 -~~~~~~dVRli~AT~~ 223 (403)
T COG1221 208 -SQPRPVDVRLICATTE 223 (403)
T ss_pred -CCCcCCCceeeecccc
Confidence 4556777766655443
No 97
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=51.66 E-value=94 Score=32.71 Aligned_cols=23 Identities=13% Similarity=0.049 Sum_probs=19.1
Q ss_pred EEEEeecCCCCccchhHHHHHHHHHHhc
Q psy899 128 SLNIFHRDLATSCSDYAQMLYDILKLLV 155 (411)
Q Consensus 128 sLnL~g~~~P~~~~~~~s~L~~~l~~L~ 155 (411)
++.|.| -||.+ |+.|...+..-+
T Consensus 150 ~l~l~G--~~G~G---KThL~~ai~~~~ 172 (450)
T PRK00149 150 PLFIYG--GVGLG---KTHLLHAIGNYI 172 (450)
T ss_pred eEEEEC--CCCCC---HHHHHHHHHHHH
Confidence 588999 99999 999888776654
No 98
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=50.73 E-value=1.9e+02 Score=29.83 Aligned_cols=31 Identities=16% Similarity=0.079 Sum_probs=22.1
Q ss_pred EEEEeecCCCCccchhHHHHHHHHHHhc------cceEEeec
Q psy899 128 SLNIFHRDLATSCSDYAQMLYDILKLLV------CKSHYFEL 163 (411)
Q Consensus 128 sLnL~g~~~P~~~~~~~s~L~~~l~~L~------Prs~yl~l 163 (411)
++.|.| -||++ |+.|...+..-+ -++.|++.
T Consensus 138 ~l~l~G--~~G~G---KThL~~ai~~~l~~~~~~~~v~yi~~ 174 (405)
T TIGR00362 138 PLFIYG--GVGLG---KTHLLHAIGNEILENNPNAKVVYVSS 174 (405)
T ss_pred eEEEEC--CCCCc---HHHHHHHHHHHHHHhCCCCcEEEEEH
Confidence 578999 99999 888888765433 24566653
No 99
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=49.83 E-value=13 Score=41.05 Aligned_cols=114 Identities=15% Similarity=0.076 Sum_probs=73.8
Q ss_pred eeeceEEEEeecCCCCccchhHHHHHHHHHHhccce-EEeec----cccccccCCcceeecC-CC---CcccccceeeeC
Q psy899 123 ALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKS-HYFEL----NVKSLNETTMIPRKDY-NT---NRLKSGLLQLSS 193 (411)
Q Consensus 123 ~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs-~yl~l----t~~~LN~~~l~P~kD~-~~---~~L~aG~LQLa~ 193 (411)
..=++++.+.| -|+++ |..|.+.+.+=..+. -|+-+ -.+.|+..-|.-.--. .+ -..-.|.+|.|+
T Consensus 333 ~~~~~pvll~G--EtGtG---Ke~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~ 407 (606)
T COG3284 333 AATDLPVLLQG--ETGTG---KEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQAD 407 (606)
T ss_pred hhcCCCeEecC--Ccchh---HHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecC
Confidence 34578899999 99999 888888886654411 11111 0111222211111100 01 134579999999
Q ss_pred CcEEEEecCCCCCCccccccchHHHHHHHHHHcCccceeecCCccccccCCCeeEeec
Q psy899 194 STYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSD 251 (411)
Q Consensus 194 gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~ 251 (411)
||.+.+||+. +|...=-.+|-.+++..+|.=- .-.. .++|+.|+--|.
T Consensus 408 gGtlFldeIg-------d~p~~~Qs~LLrVl~e~~v~p~-g~~~--~~vdirvi~ath 455 (606)
T COG3284 408 GGTLFLDEIG-------DMPLALQSRLLRVLQEGVVTPL-GGTR--IKVDIRVIAATH 455 (606)
T ss_pred CCccHHHHhh-------hchHHHHHHHHHHHhhCceecc-CCcc--eeEEEEEEeccC
Confidence 9999999996 7777888999999999888633 2223 788888877776
No 100
>PRK08727 hypothetical protein; Validated
Probab=49.80 E-value=2.4e+02 Score=26.89 Aligned_cols=66 Identities=20% Similarity=0.158 Sum_probs=41.4
Q ss_pred hHHHHHHHHHH-hhccCCCCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhccccCCcccchhhHHHHH--Hhh
Q psy899 289 LLNKIRTYISW-IQNRGFDIPENLTEIVQKDFVEMRKENKKTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLM--SLS 365 (411)
Q Consensus 289 ~l~~lR~YLa~-aR~~~~~i~ee~~~~IqddFV~~R~~~~~it~~dLh~ll~LAR~~~~~~~~~~~~~~~~~rLl--alS 365 (411)
+.+.++.+|.. |+.....+++++.++|-+.+ .+|+..++.+-. +|. ++.
T Consensus 163 ~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~-----------~rd~r~~l~~L~-----------------~l~~~~~~ 214 (233)
T PRK08727 163 DDVARAAVLRERAQRRGLALDEAAIDWLLTHG-----------ERELAGLVALLD-----------------RLDRESLA 214 (233)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhC-----------CCCHHHHHHHHH-----------------HHHHHHHH
Confidence 44556666664 55557889999998885532 245555544333 132 555
Q ss_pred cCCCCCCHHHHHHHHHHH
Q psy899 366 HGHSELTEDMWKVALAME 383 (411)
Q Consensus 366 ~G~~~lt~e~W~~a~~LE 383 (411)
.|. .+|.+.++.+.+.+
T Consensus 215 ~~~-~it~~~~~~~l~~~ 231 (233)
T PRK08727 215 AKR-RVTVPFLRRVLEEG 231 (233)
T ss_pred hCC-CCCHHHHHHHHhhc
Confidence 554 79999998887554
No 101
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=48.94 E-value=1.6e+02 Score=31.35 Aligned_cols=113 Identities=19% Similarity=0.156 Sum_probs=65.7
Q ss_pred eEEEEeecCCCCccchhHHHHHHHHHHhccceEEeeccccccccCCcceeecCCCCccccc--ceeeeCCcEEEEecCC-
Q psy899 127 FSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDYNTNRLKSG--LLQLSSSTYLILDEIH- 203 (411)
Q Consensus 127 ~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt~~~LN~~~l~P~kD~~~~~L~aG--~LQLa~gT~lvIDEt~- 203 (411)
.|+-|-| =||++ |..|.+.|+.-. ...+..++ + ...-+||- ..-++.. .+....+|+|.|||+.
T Consensus 49 ~SmIl~G--PPG~G---KTTlA~liA~~~-~~~f~~~s-----A-v~~gvkdl-r~i~e~a~~~~~~gr~tiLflDEIHR 115 (436)
T COG2256 49 HSMILWG--PPGTG---KTTLARLIAGTT-NAAFEALS-----A-VTSGVKDL-REIIEEARKNRLLGRRTILFLDEIHR 115 (436)
T ss_pred ceeEEEC--CCCCC---HHHHHHHHHHhh-CCceEEec-----c-ccccHHHH-HHHHHHHHHHHhcCCceEEEEehhhh
Confidence 3677889 89999 999998888732 33333332 1 11122331 1122221 2334678999999996
Q ss_pred CCCCccccccchHHHHHHHHHHcCccceeecCCccccccCCCeeEeecCCCCCCcceEEEecCCC
Q psy899 204 LQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSDTKSMLPSDCHIKLKPDP 268 (411)
Q Consensus 204 L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~gKS~lp~Dl~vpl~~~~ 268 (411)
+.. .-..++--.||+.+|-+. .--+=.--..++..++|| -.+|.++|-.
T Consensus 116 fnK--------~QQD~lLp~vE~G~iilI-GATTENPsF~ln~ALlSR-------~~vf~lk~L~ 164 (436)
T COG2256 116 FNK--------AQQDALLPHVENGTIILI-GATTENPSFELNPALLSR-------ARVFELKPLS 164 (436)
T ss_pred cCh--------hhhhhhhhhhcCCeEEEE-eccCCCCCeeecHHHhhh-------hheeeeecCC
Confidence 433 234678888999988874 221111113467788888 4556665543
No 102
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=47.19 E-value=65 Score=31.60 Aligned_cols=170 Identities=15% Similarity=0.179 Sum_probs=88.2
Q ss_pred eEEEEeecCCCCccchhHHHHHHHHHHhccceEEeeccccccccCCcceeecCCCCcccccceeeeCCcEEEEecCCCCC
Q psy899 127 FSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQLSSSTYLILDEIHLQP 206 (411)
Q Consensus 127 ~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt~~~LN~~~l~P~kD~~~~~L~aG~LQLa~gT~lvIDEt~L~e 206 (411)
-|+.+.| =||.+ |..|..++++=+-..... .+...+ -+. ..|.+=.-++.+|+++.|||..
T Consensus 51 ~h~lf~G--PPG~G---KTTLA~IIA~e~~~~~~~-~sg~~i------~k~----~dl~~il~~l~~~~ILFIDEIH--- 111 (233)
T PF05496_consen 51 DHMLFYG--PPGLG---KTTLARIIANELGVNFKI-TSGPAI------EKA----GDLAAILTNLKEGDILFIDEIH--- 111 (233)
T ss_dssp -EEEEES--STTSS---HHHHHHHHHHHCT--EEE-EECCC--------SC----HHHHHHHHT--TT-EEEECTCC---
T ss_pred ceEEEEC--CCccc---hhHHHHHHHhccCCCeEe-ccchhh------hhH----HHHHHHHHhcCCCcEEEEechh---
Confidence 3789999 99999 999999998776654432 111111 111 1122222346789999999996
Q ss_pred CccccccchHHHHHHHHHHcCccceee--cCCccccccCCCeeEe--ecCCC-CCCcceEEEecCCCCCchhHHHHHHHh
Q psy899 207 GQLNNTGCLNVKALSSVVNNQRMSYDF--QFYDGTFPTDIPVLSL--SDTKS-MLPSDCHIKLKPDPSCSSVIRETFSAA 281 (411)
Q Consensus 207 G~L~~~Gv~N~~AL~~li~~Q~v~YdF--~y~~ie~~~Dl~vliL--S~gKS-~lp~Dl~vpl~~~~~~~~~~~e~i~~~ 281 (411)
...-.--.+|-.+||+.+|..-- .+..-.+.+++|...| ..+++ ++.. |+++--.-...+
T Consensus 112 ----Rlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~----pLrdRFgi~~~l------- 176 (233)
T PF05496_consen 112 ----RLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSS----PLRDRFGIVLRL------- 176 (233)
T ss_dssp ----C--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSH----CCCTTSSEEEE--------
T ss_pred ----hccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccch----hHHhhcceecch-------
Confidence 33335678999999999987643 4445556667775444 33342 4431 111111000000
Q ss_pred hhcCChhhHHHHHHHHH-HhhccCCCCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q psy899 282 HQYLKPELLNKIRTYIS-WIQNRGFDIPENLTEIVQKDFVEMRKENKKTDANDLHTLIVLAR 342 (411)
Q Consensus 282 ~~~~~~~~l~~lR~YLa-~aR~~~~~i~ee~~~~IqddFV~~R~~~~~it~~dLh~ll~LAR 342 (411)
.+++++++.. -|. .|+.....|++++...|. .|..+ |++--.++++=.|
T Consensus 177 -~~Y~~~el~~---Iv~r~a~~l~i~i~~~~~~~Ia-----~rsrG---tPRiAnrll~rvr 226 (233)
T PF05496_consen 177 -EFYSEEELAK---IVKRSARILNIEIDEDAAEEIA-----RRSRG---TPRIANRLLRRVR 226 (233)
T ss_dssp ----THHHHHH---HHHHCCHCTT-EE-HHHHHHHH-----HCTTT---SHHHHHHHHHHHC
T ss_pred -hcCCHHHHHH---HHHHHHHHhCCCcCHHHHHHHH-----HhcCC---ChHHHHHHHHHHH
Confidence 1224444433 333 345688999999988873 23322 7787777776444
No 103
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=44.14 E-value=1.8e+02 Score=33.30 Aligned_cols=98 Identities=15% Similarity=0.192 Sum_probs=49.4
Q ss_pred ceEEEEeecCCCCccchhHHHHHHHHHHhc-----cc----eEEeeccccccccCCcceeecCCC--Ccccc--cceeee
Q psy899 126 KFSLNIFHRDLATSCSDYAQMLYDILKLLV-----CK----SHYFELNVKSLNETTMIPRKDYNT--NRLKS--GLLQLS 192 (411)
Q Consensus 126 ~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~-----Pr----s~yl~lt~~~LN~~~l~P~kD~~~--~~L~a--G~LQLa 192 (411)
+-++.|+| -||++ |+.+.+.+..-+ |. .....+++..+. .+.+-.+. .++.. ..+.-.
T Consensus 207 ~~n~LLvG--ppGvG---KT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~ll----aG~~~~Ge~e~rl~~l~~~l~~~ 277 (758)
T PRK11034 207 KNNPLLVG--ESGVG---KTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL----AGTKYRGDFEKRFKALLKQLEQD 277 (758)
T ss_pred CCCeEEEC--CCCCC---HHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHh----cccchhhhHHHHHHHHHHHHHhc
Confidence 34557899 99999 888888776543 21 111122222221 11110011 11211 112224
Q ss_pred CCcEEEEecCC--CCCCccccccchHHHHHHHHHHcCcccee
Q psy899 193 SSTYLILDEIH--LQPGQLNNTGCLNVKALSSVVNNQRMSYD 232 (411)
Q Consensus 193 ~gT~lvIDEt~--L~eG~L~~~Gv~N~~AL~~li~~Q~v~Yd 232 (411)
.+++|+|||.. +..|.-......-.+.|+.+++..++..-
T Consensus 278 ~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vI 319 (758)
T PRK11034 278 TNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVI 319 (758)
T ss_pred CCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEE
Confidence 56899999998 33331111112233458888888887754
No 104
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.94 E-value=4.3e+02 Score=28.41 Aligned_cols=25 Identities=8% Similarity=-0.130 Sum_probs=20.2
Q ss_pred EEEEeecCCCCccchhHHHHHHHHHHhccc
Q psy899 128 SLNIFHRDLATSCSDYAQMLYDILKLLVCK 157 (411)
Q Consensus 128 sLnL~g~~~P~~~~~~~s~L~~~l~~L~Pr 157 (411)
++.++| -||++ ++.+.+.+...+..
T Consensus 38 ~~Lf~G--PpGtG---KTTlA~~lA~~l~~ 62 (472)
T PRK14962 38 AYIFAG--PRGTG---KTTVARILAKSLNC 62 (472)
T ss_pred EEEEEC--CCCCC---HHHHHHHHHHHhcc
Confidence 378999 99999 88888888776554
No 105
>KOG1051|consensus
Probab=40.35 E-value=1.6e+02 Score=34.38 Aligned_cols=130 Identities=12% Similarity=0.073 Sum_probs=93.4
Q ss_pred HHHHHHHHHHhhhcCcHHHHHHHHHHHhcceeeecCCceeeeceEEEEeecCCCCccchhHHHHHHHHHHhccce----E
Q psy899 84 TRKDLKLLLTQLLMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKS----H 159 (411)
Q Consensus 84 iR~~Li~~La~~l~GD~laAEyLLL~L~S~V~~r~d~~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs----~ 159 (411)
-...|.+-|...+.|-..|+.++...+.-... +.+.+-++.++++.| -.+.+ |+.|.+.++.++=-+ .
T Consensus 552 ~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~---gl~~~~~~awflflG--pdgvG---Kt~lAkaLA~~~Fgse~~~I 623 (898)
T KOG1051|consen 552 RLKKLEERLHERVIGQDEAVAAIAAAIRRSRA---GLKDPNPDAWFLFLG--PDGVG---KTELAKALAEYVFGSEENFI 623 (898)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHhhhc---ccCCCCCCeEEEEEC--CCchh---HHHHHHHHHHHHcCCccceE
Confidence 34567778888899999999999998887743 211113688999999 66778 999999888887333 3
Q ss_pred Eeeccc----cccccCCcce-eecCCCCcccccceeeeCCcEEEEecCCCCCCccccccchHHHHHHHHHHcCccc
Q psy899 160 YFELNV----KSLNETTMIP-RKDYNTNRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMS 230 (411)
Q Consensus 160 yl~lt~----~~LN~~~l~P-~kD~~~~~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~ 230 (411)
.+.|+- ..+.+.+ | .+.|+...--++++.--+..++++||.+ +.-..-..-|..++...++.
T Consensus 624 riDmse~~evskligsp--~gyvG~e~gg~LteavrrrP~sVVLfdeIE-------kAh~~v~n~llq~lD~Grlt 690 (898)
T KOG1051|consen 624 RLDMSEFQEVSKLIGSP--PGYVGKEEGGQLTEAVKRRPYSVVLFEEIE-------KAHPDVLNILLQLLDRGRLT 690 (898)
T ss_pred EechhhhhhhhhccCCC--cccccchhHHHHHHHHhcCCceEEEEechh-------hcCHHHHHHHHHHHhcCccc
Confidence 333431 2333322 1 1344445556889999999999999994 77778888899999999886
No 106
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=40.34 E-value=53 Score=35.85 Aligned_cols=113 Identities=14% Similarity=0.087 Sum_probs=72.7
Q ss_pred eeceEEEEeecCCCCccchhHHHHHHHHHHhccceEEeeccccccccCC--------cceeecC--CCCcccccceeeeC
Q psy899 124 LGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETT--------MIPRKDY--NTNRLKSGLLQLSS 193 (411)
Q Consensus 124 lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt~~~LN~~~--------l~P~kD~--~~~~L~aG~LQLa~ 193 (411)
--+.++.|.| -.|++ |+-+.+.|.++.||..- |+---|+.+.+ |==.|-- +...=..|..-|||
T Consensus 244 ~Sd~tVLi~G--ETGtG---KElvAraIH~~S~R~~k-PfV~~NCAAlPesLlESELFGHeKGAFTGA~~~r~GrFElAd 317 (550)
T COG3604 244 KSDSTVLIRG--ETGTG---KELVARAIHQLSPRRDK-PFVKLNCAALPESLLESELFGHEKGAFTGAINTRRGRFELAD 317 (550)
T ss_pred cCCCeEEEec--CCCcc---HHHHHHHHHhhCcccCC-CceeeeccccchHHHHHHHhcccccccccchhccCcceeecC
Confidence 3477899999 99999 99999999999999752 22111111111 1111111 11244689999999
Q ss_pred CcEEEEecCCCCCCccccccchHHHHHHHHHHcCccceeecCCccccccCCCeeEeec
Q psy899 194 STYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSD 251 (411)
Q Consensus 194 gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~ 251 (411)
||.+.+||+. ++...=-.-|--+++.+.+.=- -..-...+|+.++--..
T Consensus 318 GGTLFLDEIG-------elPL~lQaKLLRvLQegEieRv--G~~r~ikVDVRiIAATN 366 (550)
T COG3604 318 GGTLFLDEIG-------ELPLALQAKLLRVLQEGEIERV--GGDRTIKVDVRVIAATN 366 (550)
T ss_pred CCeEechhhc-------cCCHHHHHHHHHHHhhcceeec--CCCceeEEEEEEEeccc
Confidence 9999999996 4555555566777777765532 12345677777766554
No 107
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=39.81 E-value=1.3e+02 Score=32.14 Aligned_cols=144 Identities=15% Similarity=0.267 Sum_probs=88.8
Q ss_pred cccccceee-eCCcEEEEecCC-CCC-C---ccccccchHHHHHHHHHHcCccceeecCCccccccCCCeeEeecCCC--
Q psy899 183 RLKSGLLQL-SSSTYLILDEIH-LQP-G---QLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSDTKS-- 254 (411)
Q Consensus 183 ~L~aG~LQL-a~gT~lvIDEt~-L~e-G---~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~gKS-- 254 (411)
.+..=+++. +..|+++|||++ +.. + .-|-.|..--++|-.+|+--+|+..| ..++|+-=.-|.|..=+
T Consensus 236 ~v~~~a~~~~e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~----~~v~T~~ILFI~~GAF~~~ 311 (441)
T TIGR00390 236 EIKQEAIDAVEQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKY----GMVKTDHILFIAAGAFQLA 311 (441)
T ss_pred HHHHHHHHHHHcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecc----eeEECCceeEEecCCcCCC
Confidence 355556666 789999999998 432 1 23445555668888899888887643 23455443333333211
Q ss_pred ----CCC-----cceEEEecCCCCCchhHHHHHHHhhhcCChhhHHHHHHHHHHhhc--cCCCCChhHHHHHHHHHHHHh
Q psy899 255 ----MLP-----SDCHIKLKPDPSCSSVIRETFSAAHQYLKPELLNKIRTYISWIQN--RGFDIPENLTEIVQKDFVEMR 323 (411)
Q Consensus 255 ----~lp-----~Dl~vpl~~~~~~~~~~~e~i~~~~~~~~~~~l~~lR~YLa~aR~--~~~~i~ee~~~~IqddFV~~R 323 (411)
|+| |.+.+.+++-. .+.+. +.+++..-..+|.|-+..+. +...+++++.+.|-+.=.++=
T Consensus 312 kp~DlIPEl~GR~Pi~v~L~~L~------~edL~---rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N 382 (441)
T TIGR00390 312 KPSDLIPELQGRFPIRVELQALT------TDDFE---RILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVN 382 (441)
T ss_pred ChhhccHHHhCccceEEECCCCC------HHHHH---HHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhc
Confidence 333 33444443322 11111 12243344688999888875 567789999999987766554
Q ss_pred hcCCCCCHHHHHHHHH
Q psy899 324 KENKKTDANDLHTLIV 339 (411)
Q Consensus 324 ~~~~~it~~dLh~ll~ 339 (411)
....++.++-||..+.
T Consensus 383 ~~~~~iGAR~LrtilE 398 (441)
T TIGR00390 383 EKTENIGARRLHTVLE 398 (441)
T ss_pred ccccccchhhHHHHHH
Confidence 4456899999998865
No 108
>PRK07078 hypothetical protein; Validated
Probab=38.24 E-value=6.7e+02 Score=28.82 Aligned_cols=243 Identities=11% Similarity=0.105 Sum_probs=117.4
Q ss_pred HHHHHHHhhhcCcHHHHHHHHHHHhcceeeecCCceeeeceEEEEeecCCCCccchhHHHHHHHHHHhccceEEeecccc
Q psy899 87 DLKLLLTQLLMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVK 166 (411)
Q Consensus 87 ~Li~~La~~l~GD~laAEyLLL~L~S~V~~r~d~~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt~~ 166 (411)
....+|...+.||....+||.- +++-. -... ... ..-+-+.| --+++ ||.+.++|..|+-... ....++
T Consensus 457 ~w~~FL~ei~~gD~el~~fLq~-~~GY~--Ltg~-~~~-q~~~~l~G--~G~NG---KSt~l~~l~~llG~ya-~~~~~~ 525 (759)
T PRK07078 457 TWRRFLAEVTGGDAELQAYLQR-MAGYA--LTGS-TSE-HALFFLYG--TGANG---KSVFVNTLATILGDYA-ANAPMD 525 (759)
T ss_pred HHHHHHHHHhCCCHHHHHHHHH-Hhhhh--hcCC-Cch-heEEEEEC--CCCCC---chHHHHHHHHHhhhhh-ccCCHH
Confidence 3567888888899888877543 33321 1111 111 22244678 67788 9999999999998632 333333
Q ss_pred ccccCCcceeecCCCCcccccceeeeCCcE-EEEecCCCCCCccccccchHHHHHHHHHHcCccceee---------cCC
Q psy899 167 SLNETTMIPRKDYNTNRLKSGLLQLSSSTY-LILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDF---------QFY 236 (411)
Q Consensus 167 ~LN~~~l~P~kD~~~~~L~aG~LQLa~gT~-lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF---------~y~ 236 (411)
.+.... .+-....| + -| .|.. ++..|+. +|+ .-|-..|+.+.---+|.-.| |+.
T Consensus 526 ~~~~~~----~~~~~~dl-A---~L-~GkRlv~~sE~~--~g~-----~~~~~~iK~lTGGD~I~AR~~~kd~f~f~p~~ 589 (759)
T PRK07078 526 TFMETR----GDRHPTDL-A---GL-RGARFVSAIETE--QGR-----RWAESKVKNLTGGDKISARFMRQDFFEFFPQF 589 (759)
T ss_pred HHhhhc----cccCchhH-H---hh-cCceEEEecccc--ccc-----ccchHHhhhhhcCCeEEEeeccCCceEeccce
Confidence 332211 00000001 0 11 1222 3456663 321 23555666666666665333 344
Q ss_pred ccccccCCCeeEeecCCC------CCCcceEEEecCCCCCchhHHHHHHHhhhcCChhhHHHHHHHHHHhhc---cCCCC
Q psy899 237 DGTFPTDIPVLSLSDTKS------MLPSDCHIKLKPDPSCSSVIRETFSAAHQYLKPELLNKIRTYISWIQN---RGFDI 307 (411)
Q Consensus 237 ~ie~~~Dl~vliLS~gKS------~lp~Dl~vpl~~~~~~~~~~~e~i~~~~~~~~~~~l~~lR~YLa~aR~---~~~~i 307 (411)
++-|.+|-.+.+-..... ++||+..||-.. .+..+.+-+. .+-.-.|...|..|+. ..+..
T Consensus 590 kli~~tN~~P~i~~~d~a~~RRl~iIPF~~~ip~e~---~D~~L~~KL~-------~E~~GIL~WaieG~~~~~~~GL~~ 659 (759)
T PRK07078 590 KLLIAGNHKPAIRNVDEAMKRRLHLIPFTVTVPPER---RDKRLQQKLL-------AERDGILAWAVEGCLDWQRNGLDP 659 (759)
T ss_pred eEEEEcCCCCcccCCCcceEeeEEEEeccccCChhh---cCccHHHHHH-------HHHHHHHHHHHHHHHHHHHcCCCC
Confidence 556666655444322222 677887775321 1222333221 1112234444444431 23667
Q ss_pred ChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhccccCCcccch----hhHHHHHHhhcCCCCCCHHHHHHH
Q psy899 308 PENLTEIVQKDFVEMRKENKKTDANDLHTLIVLARLEHLRLRPATHYQ----VDLIRLMSLSHGHSELTEDMWKVA 379 (411)
Q Consensus 308 ~ee~~~~IqddFV~~R~~~~~it~~dLh~ll~LAR~~~~~~~~~~~~~----~~~~rLlalS~G~~~lt~e~W~~a 379 (411)
|+.+.+..++.+-+ .+.+..+|. |.+.+.|+..-. -+--+-.|-..|...+|.-.+.+.
T Consensus 660 P~~V~~at~eY~~e---------~D~v~~Fl~----e~c~~~~~~~~~~~~LY~~Y~~wc~~~G~~~~s~k~F~~~ 722 (759)
T PRK07078 660 PQSVVEATEEYFEA---------EDALGQWIE----ERCERGANAKELTAELFNDWKEWAERAGEFVGSQKRFSDL 722 (759)
T ss_pred CHHHHHHHHHHHHh---------CChHHHHHH----HhceeCCCCceeHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 77776666554321 123333332 111122221100 011225688999999988877543
No 109
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=38.03 E-value=98 Score=34.91 Aligned_cols=124 Identities=15% Similarity=0.097 Sum_probs=60.9
Q ss_pred ceEEEEeecCCCCccchhHHHHHHHHHHhc-----c----ceEEeeccccccccCCcceeecCCC-Cccccccee---ee
Q psy899 126 KFSLNIFHRDLATSCSDYAQMLYDILKLLV-----C----KSHYFELNVKSLNETTMIPRKDYNT-NRLKSGLLQ---LS 192 (411)
Q Consensus 126 ~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~-----P----rs~yl~lt~~~LN~~~l~P~kD~~~-~~L~aG~LQ---La 192 (411)
+-++.|+| -||++ |+.+.+.+.+-+ | ......+++..+-+.. +.-++. .+| ..++. -.
T Consensus 203 ~~n~lL~G--~pG~G---KT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~---~~~g~~e~~l-~~i~~~~~~~ 273 (731)
T TIGR02639 203 KNNPLLVG--EPGVG---KTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGT---KYRGDFEERL-KAVVSEIEKE 273 (731)
T ss_pred CCceEEEC--CCCCC---HHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhc---cccchHHHHH-HHHHHHHhcc
Confidence 34568999 99999 888888776643 2 2233333333332211 000000 011 11111 12
Q ss_pred CCcEEEEecCC--CCCCcccccc-chHHHHHHHHHHcCccceeecCCc--cccccCCCeeEeecCCCCCCcceEEEecC
Q psy899 193 SSTYLILDEIH--LQPGQLNNTG-CLNVKALSSVVNNQRMSYDFQFYD--GTFPTDIPVLSLSDTKSMLPSDCHIKLKP 266 (411)
Q Consensus 193 ~gT~lvIDEt~--L~eG~L~~~G-v~N~~AL~~li~~Q~v~YdF~y~~--ie~~~Dl~vliLS~gKS~lp~Dl~vpl~~ 266 (411)
.+.+++|||.. ...|.-. -| ..--..|+..++...|.+.=--.. +.-..+....+.|+ |. .|.+.+
T Consensus 274 ~~~ILfiDEih~l~~~g~~~-~~~~~~~~~L~~~l~~g~i~~IgaTt~~e~~~~~~~d~al~rR------f~-~i~v~~ 344 (731)
T TIGR02639 274 PNAILFIDEIHTIVGAGATS-GGSMDASNLLKPALSSGKLRCIGSTTYEEYKNHFEKDRALSRR------FQ-KIDVGE 344 (731)
T ss_pred CCeEEEEecHHHHhccCCCC-CccHHHHHHHHHHHhCCCeEEEEecCHHHHHHHhhhhHHHHHh------Cc-eEEeCC
Confidence 36899999998 3333211 12 112345777788777765311111 11123445566777 76 355543
No 110
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=37.82 E-value=1.5e+02 Score=27.07 Aligned_cols=85 Identities=14% Similarity=0.143 Sum_probs=54.6
Q ss_pred eEEEEeecCCCCccchhHHHHHHHHHHhcc-----ceEEeeccccccccCCcceeecCC--CCcc---cccceeeeCCcE
Q psy899 127 FSLNIFHRDLATSCSDYAQMLYDILKLLVC-----KSHYFELNVKSLNETTMIPRKDYN--TNRL---KSGLLQLSSSTY 196 (411)
Q Consensus 127 ~sLnL~g~~~P~~~~~~~s~L~~~l~~L~P-----rs~yl~lt~~~LN~~~l~P~kD~~--~~~L---~aG~LQLa~gT~ 196 (411)
.++.+.| -++.+ |..|.+.+..++= ....+.++ . +....|.. -.+| ..|....+++++
T Consensus 4 ~~~ll~G--psGvG---KT~la~~la~~l~~~~~~~~~~~d~s-----~--~~~~~~~~~~~~~l~~~~~~~v~~~~~gV 71 (171)
T PF07724_consen 4 SNFLLAG--PSGVG---KTELAKALAELLFVGSERPLIRIDMS-----E--YSEGDDVESSVSKLLGSPPGYVGAEEGGV 71 (171)
T ss_dssp EEEEEES--STTSS---HHHHHHHHHHHHT-SSCCEEEEEEGG-----G--HCSHHHCSCHCHHHHHHTTCHHHHHHHTE
T ss_pred EEEEEEC--CCCCC---HHHHHHHHHHHhccCCccchHHHhhh-----c--ccccchHHhhhhhhhhcccceeeccchhh
Confidence 4678899 78888 8888888887765 33333332 1 11101100 0111 234555667789
Q ss_pred EEEecCCCCCCccccccc-----------hHHHHHHHHHHcCccc
Q psy899 197 LILDEIHLQPGQLNNTGC-----------LNVKALSSVVNNQRMS 230 (411)
Q Consensus 197 lvIDEt~L~eG~L~~~Gv-----------~N~~AL~~li~~Q~v~ 230 (411)
+++||.+ |... .-.++|-.+++..++.
T Consensus 72 VllDEid-------Ka~~~~~~~~~v~~~~V~~~LL~~le~g~~~ 109 (171)
T PF07724_consen 72 VLLDEID-------KAHPSNSGGADVSGEGVQNSLLQLLEGGTLT 109 (171)
T ss_dssp EEEETGG-------GCSHTTTTCSHHHHHHHHHHHHHHHHHSEEE
T ss_pred hhhHHHh-------hccccccccchhhHHHHHHHHHHHhccccee
Confidence 9999995 5555 6788999999999888
No 111
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=36.51 E-value=45 Score=28.85 Aligned_cols=76 Identities=14% Similarity=0.091 Sum_probs=49.3
Q ss_pred eceEEEEeecCCCCccchhHHHHHHHHHHhccceEEeeccccccccCCcceeecCCCCcccccceeeeCCcEEEEecCCC
Q psy899 125 GKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQLSSSTYLILDEIHL 204 (411)
Q Consensus 125 G~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt~~~LN~~~l~P~kD~~~~~L~aG~LQLa~gT~lvIDEt~L 204 (411)
.+.++.|+| -||++ ++.+.+++.....+... |+...++.. +....++-+.||.++|+|.+
T Consensus 20 ~~~pvli~G--E~GtG---K~~~A~~lh~~~~~~~~-~~~~~~~~~-------------~~~~~l~~a~~gtL~l~~i~- 79 (138)
T PF14532_consen 20 SSSPVLITG--EPGTG---KSLLARALHRYSGRANG-PFIVIDCAS-------------LPAELLEQAKGGTLYLKNID- 79 (138)
T ss_dssp SSS-EEEEC--CTTSS---HHHHHHCCHHTTTTCCS--CCCCCHHC-------------TCHHHHHHCTTSEEEEECGC-
T ss_pred CCCcEEEEc--CCCCC---HHHHHHHHHhhcCccCC-CeEEechhh-------------CcHHHHHHcCCCEEEECChH-
Confidence 466889999 99999 99999999888777322 111111111 11223444689999999996
Q ss_pred CCCccccccchHHHHHHHHHHc
Q psy899 205 QPGQLNNTGCLNVKALSSVVNN 226 (411)
Q Consensus 205 ~eG~L~~~Gv~N~~AL~~li~~ 226 (411)
.....-...|-+.+..
T Consensus 80 ------~L~~~~Q~~L~~~l~~ 95 (138)
T PF14532_consen 80 ------RLSPEAQRRLLDLLKR 95 (138)
T ss_dssp ------CS-HHHHHHHHHHHHH
T ss_pred ------HCCHHHHHHHHHHHHh
Confidence 4445677777777776
No 112
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=36.14 E-value=2.1e+02 Score=31.82 Aligned_cols=36 Identities=17% Similarity=0.113 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHHHhhhccccCCcccchhhHHHHHHhhcCCCCCCHHHHHHHHH
Q psy899 328 KTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALA 381 (411)
Q Consensus 328 ~it~~dLh~ll~LAR~~~~~~~~~~~~~~~~~rLlalS~G~~~lt~e~W~~a~~ 381 (411)
..|..|+..+++-|. +.|+-.|...++.++++.|+.
T Consensus 355 G~sgadl~~l~~eAa------------------~~a~r~~~~~i~~~d~~~a~~ 390 (644)
T PRK10733 355 GFSGADLANLVNEAA------------------LFAARGNKRVVSMVEFEKAKD 390 (644)
T ss_pred CCCHHHHHHHHHHHH------------------HHHHHcCCCcccHHHHHHHHH
Confidence 578899999999888 889988999999999888764
No 113
>PRK04195 replication factor C large subunit; Provisional
Probab=35.99 E-value=5.6e+02 Score=27.24 Aligned_cols=26 Identities=15% Similarity=-0.055 Sum_probs=20.9
Q ss_pred ceEEEEeecCCCCccchhHHHHHHHHHHhcc
Q psy899 126 KFSLNIFHRDLATSCSDYAQMLYDILKLLVC 156 (411)
Q Consensus 126 ~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~P 156 (411)
.-++.|+| -||++ ++.+...+.+-+.
T Consensus 39 ~~~lLL~G--ppG~G---KTtla~ala~el~ 64 (482)
T PRK04195 39 KKALLLYG--PPGVG---KTSLAHALANDYG 64 (482)
T ss_pred CCeEEEEC--CCCCC---HHHHHHHHHHHcC
Confidence 45789999 99999 8888888866553
No 114
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=35.90 E-value=49 Score=30.65 Aligned_cols=67 Identities=19% Similarity=0.061 Sum_probs=33.1
Q ss_pred EeecCCCCccchhHHHHHHHHHHhccceEEeec--cccccccCCcceeecCCCCcccccceeee---CCcEEEEecCCCC
Q psy899 131 IFHRDLATSCSDYAQMLYDILKLLVCKSHYFEL--NVKSLNETTMIPRKDYNTNRLKSGLLQLS---SSTYLILDEIHLQ 205 (411)
Q Consensus 131 L~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~l--t~~~LN~~~l~P~kD~~~~~L~aG~LQLa---~gT~lvIDEt~L~ 205 (411)
+.| .||.+ |+.++.-+-.-. ...++. +....+... ....+...+.+.+-..... .+..++|||..|-
T Consensus 3 v~G--~pGsG---KSt~i~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~s~~~~~~~~~~~~~liiDE~~~~ 74 (234)
T PF01443_consen 3 VHG--VPGSG---KSTLIKKLLKDR--LVVTVISPTIELYTEWL-PDPPSKSVRTVDSFLKALVKPKSYDTLIIDEAQLL 74 (234)
T ss_pred EEc--CCCCC---HHHHHHHHHHhc--cccccccccceeccccc-cccCCccccEEeEhhhcccccCcCCEEEEeccccC
Confidence 568 99999 777654333331 111111 111111111 1222222344555555544 4789999999843
No 115
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=35.29 E-value=36 Score=34.77 Aligned_cols=36 Identities=17% Similarity=0.376 Sum_probs=27.3
Q ss_pred ccceeecCCC----CCCCCcccceeeecccCCCCEEEEEeEec
Q psy899 6 SSLDVQKQPP----CPNGYHTRLAQWRHRVRYPVVSKFFGTWG 44 (411)
Q Consensus 6 ~~~~~q~~p~----~~~g~~~~~i~~~~~~rpgd~v~~~G~l~ 44 (411)
-.+||.-||+ +|+|++.+ ..=+++|||.|++.|-.+
T Consensus 228 ~NvRIAtPPp~~~~~PpG~mSS---yi~sLKpGDKvtisGPfG 267 (410)
T COG2871 228 LNVRIATPPPRNPDAPPGQMSS---YIWSLKPGDKVTISGPFG 267 (410)
T ss_pred EEEEeccCCCCCCCCCccceee---eEEeecCCCeEEEeccch
Confidence 4578999985 56665332 556899999999999876
No 116
>PLN03025 replication factor C subunit; Provisional
Probab=33.81 E-value=4.9e+02 Score=25.89 Aligned_cols=23 Identities=9% Similarity=-0.154 Sum_probs=18.5
Q ss_pred EEEEeecCCCCccchhHHHHHHHHHHhc
Q psy899 128 SLNIFHRDLATSCSDYAQMLYDILKLLV 155 (411)
Q Consensus 128 sLnL~g~~~P~~~~~~~s~L~~~l~~L~ 155 (411)
|+.|.| -||++ |+.+...+..-+
T Consensus 36 ~lll~G--p~G~G---KTtla~~la~~l 58 (319)
T PLN03025 36 NLILSG--PPGTG---KTTSILALAHEL 58 (319)
T ss_pred eEEEEC--CCCCC---HHHHHHHHHHHH
Confidence 688999 99999 888888765543
No 117
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=32.08 E-value=36 Score=27.32 Aligned_cols=72 Identities=18% Similarity=0.055 Sum_probs=41.2
Q ss_pred eEEEEeecCCCCccchhHHHHHHHHHHhccceE--EeeccccccccCCcc-------e--eecCCCCcccccceeeeCC-
Q psy899 127 FSLNIFHRDLATSCSDYAQMLYDILKLLVCKSH--YFELNVKSLNETTMI-------P--RKDYNTNRLKSGLLQLSSS- 194 (411)
Q Consensus 127 ~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~--yl~lt~~~LN~~~l~-------P--~kD~~~~~L~aG~LQLa~g- 194 (411)
-++.|.| -||++ |+.+...+...+.... .+-++.+........ + .............+..+..
T Consensus 3 ~~~~l~G--~~G~G---KTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (148)
T smart00382 3 EVILIVG--PPGSG---KTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKL 77 (148)
T ss_pred CEEEEEC--CCCCc---HHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhc
Confidence 3678899 89999 9999988877777642 332332222211100 0 0111112223355666665
Q ss_pred --cEEEEecCC
Q psy899 195 --TYLILDEIH 203 (411)
Q Consensus 195 --T~lvIDEt~ 203 (411)
.+++|||..
T Consensus 78 ~~~viiiDei~ 88 (148)
T smart00382 78 KPDVLILDEIT 88 (148)
T ss_pred CCCEEEEECCc
Confidence 899999996
No 118
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.55 E-value=3.5e+02 Score=29.37 Aligned_cols=24 Identities=13% Similarity=-0.045 Sum_probs=18.7
Q ss_pred EEEeecCCCCccchhHHHHHHHHHHhccc
Q psy899 129 LNIFHRDLATSCSDYAQMLYDILKLLVCK 157 (411)
Q Consensus 129 LnL~g~~~P~~~~~~~s~L~~~l~~L~Pr 157 (411)
+.++| -||++ |..+...+..-+-.
T Consensus 43 ~Lf~G--P~GtG---KTTlAriLAk~Lnc 66 (484)
T PRK14956 43 YIFFG--PRGVG---KTTIARILAKRLNC 66 (484)
T ss_pred EEEEC--CCCCC---HHHHHHHHHHhcCc
Confidence 78999 99999 88887777665543
No 119
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=31.31 E-value=1.5e+02 Score=31.82 Aligned_cols=65 Identities=15% Similarity=0.108 Sum_probs=48.4
Q ss_pred HHHHHHHhhhcCcHHHHHHHHHHHhcceeeec----CCceeeeceEEEEeecCCCCccchhHHHHHHHHHHhccc
Q psy899 87 DLKLLLTQLLMGDDVAADYLICYLLSRVYCRD----EVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCK 157 (411)
Q Consensus 87 ~Li~~La~~l~GD~laAEyLLL~L~S~V~~r~----d~~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Pr 157 (411)
++..+|...+.|-..|+.++..++..+. .|. +....+-+=++.|.| -||++ |+.+.+.++..+..
T Consensus 5 ~I~~~Ld~~IiGQ~eAkk~lsvAl~n~~-~r~~~~~~~~~e~~p~~ILLiG--ppG~G---KT~lAraLA~~l~~ 73 (441)
T TIGR00390 5 EIVAELDKYIIGQDNAKKSVAIALRNRY-RRSQLNEELKDEVTPKNILMIG--PTGVG---KTEIARRLAKLANA 73 (441)
T ss_pred HHHHHHhhhccCHHHHHHHHHHHHHhhh-hhhccccccccccCCceEEEEC--CCCCC---HHHHHHHHHHHhCC
Confidence 4788898889999999999999998762 121 110112234789999 99999 99999998888753
No 120
>PRK06620 hypothetical protein; Validated
Probab=31.16 E-value=4.6e+02 Score=24.77 Aligned_cols=24 Identities=29% Similarity=0.225 Sum_probs=20.5
Q ss_pred eEEEEeecCCCCccchhHHHHHHHHHHhc
Q psy899 127 FSLNIFHRDLATSCSDYAQMLYDILKLLV 155 (411)
Q Consensus 127 ~sLnL~g~~~P~~~~~~~s~L~~~l~~L~ 155 (411)
.++-|.| -||.+ |+.|.+++..-.
T Consensus 45 ~~l~l~G--p~G~G---KThLl~a~~~~~ 68 (214)
T PRK06620 45 FTLLIKG--PSSSG---KTYLTKIWQNLS 68 (214)
T ss_pred ceEEEEC--CCCCC---HHHHHHHHHhcc
Confidence 4789999 99999 999999877654
No 121
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=29.94 E-value=45 Score=27.49 Aligned_cols=89 Identities=15% Similarity=0.145 Sum_probs=47.6
Q ss_pred EEEeecCCCCccchhHHHHHHHHHHhccceEEeeccccccccCCcceeecCCCCcccccceeee----CCcEEEEecCC-
Q psy899 129 LNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQLS----SSTYLILDEIH- 203 (411)
Q Consensus 129 LnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt~~~LN~~~l~P~kD~~~~~L~aG~LQLa----~gT~lvIDEt~- 203 (411)
|.|.| -||++ |+.+.+.+.+.+- .+++.++...+.+....- ....-.+.++-+ ...+++|||.+
T Consensus 1 ill~G--~~G~G---KT~l~~~la~~l~-~~~~~i~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~~~vl~iDe~d~ 69 (132)
T PF00004_consen 1 ILLHG--PPGTG---KTTLARALAQYLG-FPFIEIDGSELISSYAGD-----SEQKIRDFFKKAKKSAKPCVLFIDEIDK 69 (132)
T ss_dssp EEEES--STTSS---HHHHHHHHHHHTT-SEEEEEETTHHHTSSTTH-----HHHHHHHHHHHHHHTSTSEEEEEETGGG
T ss_pred CEEEC--cCCCC---eeHHHHHHHhhcc-cccccccccccccccccc-----cccccccccccccccccceeeeeccchh
Confidence 57889 99999 9999998888763 334444444443221000 011111222221 35899999998
Q ss_pred CCCCc---cccccchHHHHHHHHHHcCc
Q psy899 204 LQPGQ---LNNTGCLNVKALSSVVNNQR 228 (411)
Q Consensus 204 L~eG~---L~~~Gv~N~~AL~~li~~Q~ 228 (411)
+.... -+.....-...|-+.+++..
T Consensus 70 l~~~~~~~~~~~~~~~~~~L~~~l~~~~ 97 (132)
T PF00004_consen 70 LFPKSQPSSSSFEQRLLNQLLSLLDNPS 97 (132)
T ss_dssp TSHHCSTSSSHHHHHHHHHHHHHHHTTT
T ss_pred cccccccccccccccccceeeecccccc
Confidence 32211 22222333566666666543
No 122
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.85 E-value=7.3e+02 Score=26.96 Aligned_cols=21 Identities=14% Similarity=0.085 Sum_probs=17.6
Q ss_pred EEEEeecCCCCccchhHHHHHHHHHH
Q psy899 128 SLNIFHRDLATSCSDYAQMLYDILKL 153 (411)
Q Consensus 128 sLnL~g~~~P~~~~~~~s~L~~~l~~ 153 (411)
++.++| -||++ |+.+...+..
T Consensus 37 a~Lf~G--p~G~G---KTT~ArilAk 57 (491)
T PRK14964 37 SILLVG--ASGVG---KTTCARIISL 57 (491)
T ss_pred eEEEEC--CCCcc---HHHHHHHHHH
Confidence 489999 99999 8888877765
No 123
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=29.58 E-value=5.5e+02 Score=27.19 Aligned_cols=65 Identities=12% Similarity=0.191 Sum_probs=42.4
Q ss_pred EEEEeecCCCCccchhHHHHHHHHHHhccceEEeeccccccccCCcceeecCCCCcccccceeeeC---CcEEEEecCC
Q psy899 128 SLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQLSS---STYLILDEIH 203 (411)
Q Consensus 128 sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt~~~LN~~~l~P~kD~~~~~L~aG~LQLa~---gT~lvIDEt~ 203 (411)
.+.|.| -||++ ++-|.+.+..-. ++.++.+....+.+.+ =+++.....-+...|. ..++.|||.+
T Consensus 278 giLl~G--pPGtG---KT~lAkava~~~-~~~fi~v~~~~l~sk~-----vGesek~ir~~F~~A~~~~p~iiFiDEiD 345 (494)
T COG0464 278 GVLLYG--PPGTG---KTLLAKAVALES-RSRFISVKGSELLSKW-----VGESEKNIRELFEKARKLAPSIIFIDEID 345 (494)
T ss_pred eeEEEC--CCCCC---HHHHHHHHHhhC-CCeEEEeeCHHHhccc-----cchHHHHHHHHHHHHHcCCCcEEEEEchh
Confidence 689999 99999 888888888733 4444554433443322 2233444445555555 6889999998
No 124
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=29.43 E-value=72 Score=29.42 Aligned_cols=13 Identities=23% Similarity=0.611 Sum_probs=10.7
Q ss_pred eeCCcEEEEecCC
Q psy899 191 LSSSTYLILDEIH 203 (411)
Q Consensus 191 La~gT~lvIDEt~ 203 (411)
+++|+.+||||+.
T Consensus 77 ~~~~~liviDEa~ 89 (193)
T PF05707_consen 77 LPKGSLIVIDEAQ 89 (193)
T ss_dssp SGTT-EEEETTGG
T ss_pred cCCCcEEEEECCh
Confidence 5589999999998
No 125
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=29.37 E-value=83 Score=29.68 Aligned_cols=102 Identities=18% Similarity=0.178 Sum_probs=64.6
Q ss_pred HHHHHHHhcceeeecCCceeeeceEEEEeecCCCCccchhHHHHHHHHHHhccceEEeeccccccccCCcceeecCCCCc
Q psy899 104 DYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDYNTNR 183 (411)
Q Consensus 104 EyLLL~L~S~V~~r~d~~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt~~~LN~~~l~P~kD~~~~~ 183 (411)
.+.|+.++++++ ++ | . --+..+-|.| --|.+ |+...+.| .|. .|... ++... .||.
T Consensus 34 ~~wl~~~Var~~-~p-g-~-k~d~~lvl~G--~QG~G---KStf~~~L---~~~-~~~d~----~~~~~---~kd~---- 89 (198)
T PF05272_consen 34 RKWLVGAVARAY-EP-G-C-KNDTVLVLVG--KQGIG---KSTFFRKL---GPE-YFSDS----INDFD---DKDF---- 89 (198)
T ss_pred HHHHHHHHHHHh-CC-C-C-cCceeeeEec--CCccc---HHHHHHHH---hHH-hccCc----cccCC---CcHH----
Confidence 445666666665 23 4 2 2356777888 77888 88877665 444 33222 11111 1221
Q ss_pred ccccceeeeCCcEEEEecCCCCCCccccccchHHHHHHHHHHcCccceeecCCcccc
Q psy899 184 LKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTF 240 (411)
Q Consensus 184 L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~~ie~ 240 (411)
..++...-.+.+||.. .++..+..+|+++|+..++.|-=||.....
T Consensus 90 ----~~~l~~~~iveldEl~-------~~~k~~~~~lK~~iT~~~~~~R~pY~~~~~ 135 (198)
T PF05272_consen 90 ----LEQLQGKWIVELDELD-------GLSKKDVEALKSFITRRTDTYRPPYGRDPE 135 (198)
T ss_pred ----HHHHHHhHheeHHHHh-------hcchhhHHHHHHHhcccceeeecCCcCcce
Confidence 2345666778899985 555788999999999999999877765433
No 126
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=29.26 E-value=47 Score=35.12 Aligned_cols=112 Identities=14% Similarity=0.099 Sum_probs=72.4
Q ss_pred eeeeceEEEEeecCCCCccchhHHHHHHHHHHhccceEEeeccccccccCCcceeecCCC--------CcccccceeeeC
Q psy899 122 FALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDYNT--------NRLKSGLLQLSS 193 (411)
Q Consensus 122 ~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt~~~LN~~~l~P~kD~~~--------~~L~aG~LQLa~ 193 (411)
++--+-+|.|.| ..|++ |.-|.+......||+. -|.-.-|+.+++ ..+-++ ..=..|.+-.|+
T Consensus 223 ~AmlDAPLLI~G--eTGTG---KdLlAkaCH~~S~R~~-~pFlalNCA~lP---e~~aEsElFG~apg~~gk~GffE~An 293 (511)
T COG3283 223 LAMLDAPLLITG--ETGTG---KDLLAKACHLASPRHS-KPFLALNCASLP---EDAAESELFGHAPGDEGKKGFFEQAN 293 (511)
T ss_pred hhccCCCeEEec--CCCch---HHHHHHHHhhcCcccC-CCeeEeecCCCc---hhHhHHHHhcCCCCCCCccchhhhcc
Confidence 344567899999 99999 9999999999999976 233222222222 111111 122579999999
Q ss_pred CcEEEEecCCCCCCccccccchHHHHHHHHHHcCccceeecCCccccccCCCeeEeec
Q psy899 194 STYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSD 251 (411)
Q Consensus 194 gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~ 251 (411)
||.+.+||+. +|..+=..-|-.+++..+.-= --..-|..+|+.|+--|.
T Consensus 294 gGTVlLDeIg-------EmSp~lQaKLLRFL~DGtFRR--VGee~Ev~vdVRVIcatq 342 (511)
T COG3283 294 GGTVLLDEIG-------EMSPRLQAKLLRFLNDGTFRR--VGEDHEVHVDVRVICATQ 342 (511)
T ss_pred CCeEEeehhh-------hcCHHHHHHHHHHhcCCceee--cCCcceEEEEEEEEeccc
Confidence 9999999997 444455555666666664221 122456777777776665
No 127
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=28.94 E-value=1.6e+02 Score=26.89 Aligned_cols=33 Identities=24% Similarity=0.406 Sum_probs=22.2
Q ss_pred eCCcEEEEecCCCCCCccccccchHHHHHHHHHHcCc
Q psy899 192 SSSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQR 228 (411)
Q Consensus 192 a~gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~ 228 (411)
.+.-.++|||. |.+.-.+..=.+++.++++..+
T Consensus 94 ~~~~liviDEI----G~mEl~~~~F~~~v~~~l~s~~ 126 (168)
T PF03266_consen 94 SSSDLIVIDEI----GKMELKSPGFREAVEKLLDSNK 126 (168)
T ss_dssp HCCHEEEE-------STTCCC-CHHHHHHHHHHCTTS
T ss_pred CCCCEEEEecc----chhhhcCHHHHHHHHHHHcCCC
Confidence 46679999999 5555678888999999998543
No 128
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=28.25 E-value=2e+02 Score=25.63 Aligned_cols=56 Identities=13% Similarity=0.167 Sum_probs=40.7
Q ss_pred HHHHHHHHhhhcCcHHHHHHHHHHHhcceeeecCCceeeeceEEEEeecCCCCccchhHHHH
Q psy899 86 KDLKLLLTQLLMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSDYAQML 147 (411)
Q Consensus 86 ~~Li~~La~~l~GD~laAEyLLL~L~S~V~~r~d~~~~lG~~sLnL~g~~~P~~~~~~~s~L 147 (411)
+.|-..|...|+|-.+|.+-++=++-+-..+. .+.-.+-|-+.| .||++++|.++|
T Consensus 17 ~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~~----~p~KpLVlSfHG--~tGtGKn~v~~l 72 (127)
T PF06309_consen 17 TGLEKDLQRNLFGQHLAVEVVVNAIKGHLANP----NPRKPLVLSFHG--WTGTGKNFVSRL 72 (127)
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHcCC----CCCCCEEEEeec--CCCCcHHHHHHH
Confidence 45777888899999999999888777765443 223357778889 999994444433
No 129
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=28.20 E-value=63 Score=37.99 Aligned_cols=73 Identities=14% Similarity=0.138 Sum_probs=37.3
Q ss_pred eEEEEeecCCCCccchhHHHHHHHHHHhccc----eEEeeccc---cccccCCcceeecCCC--CcccccceeeeCCcEE
Q psy899 127 FSLNIFHRDLATSCSDYAQMLYDILKLLVCK----SHYFELNV---KSLNETTMIPRKDYNT--NRLKSGLLQLSSSTYL 197 (411)
Q Consensus 127 ~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Pr----s~yl~lt~---~~LN~~~l~P~kD~~~--~~L~aG~LQLa~gT~l 197 (411)
+.+ |+| .||++ |+.+++.+..+.-. +..+..|. ..|....=.+.+.-.. .....|.-.+.+++++
T Consensus 364 v~v-v~G--~AGTG---KTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~tGi~a~TI~sll~~~~~~~~~l~~~~vl 437 (988)
T PRK13889 364 LGV-VVG--YAGTG---KSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIASRTIASLEHGWGQGRDLLTSRDVL 437 (988)
T ss_pred eEE-EEe--CCCCC---HHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhccCcchhhHHHHHhhhcccccccccCcEE
Confidence 444 899 99999 77777766555432 23222111 1111100000000000 0112345567889999
Q ss_pred EEecCCCC
Q psy899 198 ILDEIHLQ 205 (411)
Q Consensus 198 vIDEt~L~ 205 (411)
||||..|-
T Consensus 438 IVDEASMv 445 (988)
T PRK13889 438 VIDEAGMV 445 (988)
T ss_pred EEECcccC
Confidence 99999865
No 130
>COG4930 Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=27.91 E-value=1.3e+02 Score=32.29 Aligned_cols=218 Identities=15% Similarity=0.210 Sum_probs=118.8
Q ss_pred eceEEEEeecCCCCccchhHHHHHHHHHHhccceEEeec---cccccccCCcceeecCCCCcccccceeeeCCcEEEEec
Q psy899 125 GKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFEL---NVKSLNETTMIPRKDYNTNRLKSGLLQLSSSTYLILDE 201 (411)
Q Consensus 125 G~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~l---t~~~LN~~~l~P~kD~~~~~L~aG~LQLa~gT~lvIDE 201 (411)
|+.++.=.| --+++ ++.+|+ .+.|.+..+++ |.++|= |+--.=..|.+-+- -.+++||
T Consensus 224 nNyN~cElG--Pr~TG---KshvYk---evSpn~~liSGGqttvAnLF---------YNmatrqiGlvg~w--DvVaFDE 284 (683)
T COG4930 224 NNYNMCELG--PRQTG---KSHVYK---EVSPNVRLISGGQTTVANLF---------YNMATRQIGLVGLW--DVVAFDE 284 (683)
T ss_pred CCcchhhcC--CCccC---ccceeh---ccCCceEEeeCCcccHHHHH---------HHHhhccccceeee--eeeeehh
Confidence 444444445 33445 666654 66788888775 444330 11111134444433 3688999
Q ss_pred CC-CCCCccccccchHHHHHHHHHHcCccceeecCCccccccCCCeeEeecC----CCCCC-cceEEEecCCCCCchhHH
Q psy899 202 IH-LQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSDT----KSMLP-SDCHIKLKPDPSCSSVIR 275 (411)
Q Consensus 202 t~-L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~g----KS~lp-~Dl~vpl~~~~~~~~~~~ 275 (411)
.. .. =....-++-|+.-|.....+ .-.-....|.+.+.+-.- .+++| .|+.-|+. .+-.|.
T Consensus 285 Vagir-----FkdkDg~qilKDYMaSGsf~----RG~~~v~~~ASlVFvGNvnqs~E~lvktshL~~pfP-eaM~Dt--- 351 (683)
T COG4930 285 VAGIR-----FKDKDGMQILKDYMASGSFE----RGDKKVVSDASLVFVGNVNQSSEGLVKTSHLTYPFP-EAMRDT--- 351 (683)
T ss_pred hcccc-----ccCccHHHHHHHHHhcCCcc----cccccccccceEEEEecccccccceeehhhccccCc-hhhhhh---
Confidence 85 11 11112467778888876322 111222233333222111 13444 23333332 221222
Q ss_pred HHHHHhhhcCChhhHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHHhhcC------------CCCCHHHHHHHHHHHhh
Q psy899 276 ETFSAAHQYLKPELLNKIRTYISWIQNRGFDIPENLTEIVQKDFVEMRKEN------------KKTDANDLHTLIVLARL 343 (411)
Q Consensus 276 e~i~~~~~~~~~~~l~~lR~YLa~aR~~~~~i~ee~~~~IqddFV~~R~~~------------~~it~~dLh~ll~LAR~ 343 (411)
..+...|.++..=++-++|.|--.-| |- -+.+++.+.|=+||+.+ .+.+++|-.+.-+..-
T Consensus 352 AFfDR~H~yiPGWEiPK~rpehft~r---YG---~isDY~AE~~reMRKrS~sd~i~rf~kLgnNlnqRDviavkrt~S- 424 (683)
T COG4930 352 AFFDRIHGYIPGWEIPKIRPEHFTKR---YG---VISDYFAEALREMRKRSLSDLIGRFVKLGNNLNQRDVIAVKRTTS- 424 (683)
T ss_pred HHHHHHhccCccccCccCCHHHhccc---cc---hHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHH-
Confidence 23445555554436666776643333 11 26788999999999853 1577777766544333
Q ss_pred hccccCCcccchhhHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhccccccccc
Q psy899 344 EHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALAMEKERKSRPRLGLRKL 397 (411)
Q Consensus 344 ~~~~~~~~~~~~~~~~rLlalS~G~~~lt~e~W~~a~~LE~~R~~R~~~~~~~~ 397 (411)
| ||-|.|-..+.+++.-+.+.+.--+-+.|.+.+|.|+
T Consensus 425 -------G---------LlKLL~Pd~t~~kee~k~ileyAle~RrRVkeqLkKi 462 (683)
T COG4930 425 -------G---------LLKLLFPDKTFDKEELKTILEYALELRRRVKEQLKKI 462 (683)
T ss_pred -------H---------HHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3 8899999999999988887765555566777777765
No 131
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=27.01 E-value=5.6e+02 Score=29.71 Aligned_cols=196 Identities=13% Similarity=0.100 Sum_probs=99.6
Q ss_pred ceEEEEeecCCCCccchhHHHHHHHHHHhccce---------EEeeccccccccCCcceeecC-CC--Ccccccceee--
Q psy899 126 KFSLNIFHRDLATSCSDYAQMLYDILKLLVCKS---------HYFELNVKSLNETTMIPRKDY-NT--NRLKSGLLQL-- 191 (411)
Q Consensus 126 ~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs---------~yl~lt~~~LN~~~l~P~kD~-~~--~~L~aG~LQL-- 191 (411)
+-++.|+| .||.+ |+.|.+.+.+-++.. .++.+.+..+.+.. .| +. .+|..=.-.+
T Consensus 208 ~~n~lLvG--~pGvG---KTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~-----~~~ge~e~~lk~ii~e~~~ 277 (852)
T TIGR03345 208 QNNPILTG--EAGVG---KTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGA-----SVKGEFENRLKSVIDEVKA 277 (852)
T ss_pred cCceeEEC--CCCCC---HHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhccc-----ccchHHHHHHHHHHHHHHh
Confidence 34668999 99999 999988887765322 22333333333211 11 00 1111111011
Q ss_pred -eCCcEEEEecCC-C-CCCccccccch-HHHHHHHHHHcCccceeecCCccc--cccCCCeeEeecCCCCCCcceEEEec
Q psy899 192 -SSSTYLILDEIH-L-QPGQLNNTGCL-NVKALSSVVNNQRMSYDFQFYDGT--FPTDIPVLSLSDTKSMLPSDCHIKLK 265 (411)
Q Consensus 192 -a~gT~lvIDEt~-L-~eG~L~~~Gv~-N~~AL~~li~~Q~v~YdF~y~~ie--~~~Dl~vliLS~gKS~lp~Dl~vpl~ 265 (411)
..+++++|||.. | ..|. ..|-. .-..|+-.++...+.+.---..-+ --+.+...+.++ |. .|.+.
T Consensus 278 ~~~~~ILfIDEih~l~~~g~--~~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~~~~~~~d~AL~rR------f~-~i~v~ 348 (852)
T TIGR03345 278 SPQPIILFIDEAHTLIGAGG--QAGQGDAANLLKPALARGELRTIAATTWAEYKKYFEKDPALTRR------FQ-VVKVE 348 (852)
T ss_pred cCCCeEEEEeChHHhccCCC--ccccccHHHHhhHHhhCCCeEEEEecCHHHHhhhhhccHHHHHh------Ce-EEEeC
Confidence 246789999999 3 3231 11111 123478888888877542111111 124456667777 75 45555
Q ss_pred CCCCCchhHHHHHHHhhh----cCC-hhhHHHHHHHHHHhh-c-cCCCCChhHHHHHHH--HHHHHhhcCCCCCHHHHHH
Q psy899 266 PDPSCSSVIRETFSAAHQ----YLK-PELLNKIRTYISWIQ-N-RGFDIPENLTEIVQK--DFVEMRKENKKTDANDLHT 336 (411)
Q Consensus 266 ~~~~~~~~~~e~i~~~~~----~~~-~~~l~~lR~YLa~aR-~-~~~~i~ee~~~~Iqd--dFV~~R~~~~~it~~dLh~ 336 (411)
+-.. +. ..+.+..... +.. .-.-+.++.-+..+. . ..-.+|+.+.+.|-+ ..+.+.+...++..+++.+
T Consensus 349 eps~-~~-~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~ 426 (852)
T TIGR03345 349 EPDE-ET-AIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACARVALSQNATPAALEDLRR 426 (852)
T ss_pred CCCH-HH-HHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHHHHHHHHHHHhccCCchhHHHHHH
Confidence 4332 11 1111111110 001 112334554445443 2 346688888888877 5566666666677777777
Q ss_pred HHHHHh
Q psy899 337 LIVLAR 342 (411)
Q Consensus 337 ll~LAR 342 (411)
-+.-++
T Consensus 427 ~~~~~~ 432 (852)
T TIGR03345 427 RIAALE 432 (852)
T ss_pred HHHHHH
Confidence 665555
No 132
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=26.76 E-value=4.2e+02 Score=30.77 Aligned_cols=59 Identities=22% Similarity=0.336 Sum_probs=35.9
Q ss_pred CCcEEEEecCCCCCCccccccchHHHHHHHHHHcC--ccceeecCCccccccCCCeeEeecCCCCCCcceEEEecCCC
Q psy899 193 SSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQ--RMSYDFQFYDGTFPTDIPVLSLSDTKSMLPSDCHIKLKPDP 268 (411)
Q Consensus 193 ~gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q--~v~YdF~y~~ie~~~Dl~vliLS~gKS~lp~Dl~vpl~~~~ 268 (411)
...++||||.++ +...-.++|-..||.- .+.|.|--. .+-.|+..|+|| | ..|.+++-.
T Consensus 119 r~KVIIIDEah~-------LT~~A~NALLKtLEEPP~~v~FILaTt---d~~KIp~TIrSR------C-q~f~Fk~Ls 179 (830)
T PRK07003 119 RFKVYMIDEVHM-------LTNHAFNAMLKTLEEPPPHVKFILATT---DPQKIPVTVLSR------C-LQFNLKQMP 179 (830)
T ss_pred CceEEEEeChhh-------CCHHHHHHHHHHHHhcCCCeEEEEEEC---Chhhccchhhhh------e-EEEecCCcC
Confidence 457899999972 2224456777777763 455555221 123467788888 4 566665543
No 133
>cd04486 YhcR_OBF_like YhcR_OBF_like: A subfamily of OB-fold domains similar to the OB folds of Bacillus subtilis YhcR. YhcR is a sugar-nonspecific nuclease, which is active in the presence of Ca2+ and Mn2+. It cleaves RNA endonucleolytically, producing 3'-monophosphate nucleosides. YhcR appears to be the major Ca2+ activated nuclease of B. subtilis. YhcR may be localized in the cell wall.
Probab=25.70 E-value=59 Score=26.13 Aligned_cols=19 Identities=16% Similarity=-0.031 Sum_probs=15.7
Q ss_pred ecccCCCCEEEEEeEecCC
Q psy899 28 RHRVRYPVVSKFFGTWGSG 46 (411)
Q Consensus 28 ~~~~rpgd~v~~~G~l~~~ 46 (411)
...+.+||+|.++|.+...
T Consensus 42 ~~~~~~Gd~V~vtG~v~ey 60 (78)
T cd04486 42 GADVAVGDLVRVTGTVTEY 60 (78)
T ss_pred CCCCCCCCEEEEEEEEEee
Confidence 4578999999999998633
No 134
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=25.34 E-value=6.7e+02 Score=28.17 Aligned_cols=31 Identities=13% Similarity=0.100 Sum_probs=23.0
Q ss_pred EEEEeecCCCCccchhHHHHHHHHHHhc----c--ceEEeec
Q psy899 128 SLNIFHRDLATSCSDYAQMLYDILKLLV----C--KSHYFEL 163 (411)
Q Consensus 128 sLnL~g~~~P~~~~~~~s~L~~~l~~L~----P--rs~yl~l 163 (411)
+|.|.| -+|.+ |+.|+..+.+-+ | ++.|++.
T Consensus 316 pL~LyG--~sGsG---KTHLL~AIa~~a~~~~~g~~V~Yita 352 (617)
T PRK14086 316 PLFIYG--ESGLG---KTHLLHAIGHYARRLYPGTRVRYVSS 352 (617)
T ss_pred cEEEEC--CCCCC---HHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 488999 99999 999988776644 2 4566654
No 135
>KOG0734|consensus
Probab=24.31 E-value=6.3e+02 Score=28.44 Aligned_cols=141 Identities=21% Similarity=0.257 Sum_probs=83.7
Q ss_pred cEEEEecCCCCCCccccccchHHHHHHHHHHcCccceeecCCccccccCCCeeEeecCC-------CCCC---cceEEEe
Q psy899 195 TYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSDTK-------SMLP---SDCHIKL 264 (411)
Q Consensus 195 T~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~gK-------S~lp---~Dl~vpl 264 (411)
-++.|||.+-=-| +....+.+-.+.-++|--++.| .|++-+ +++|+--.- .++. ||.+|.+
T Consensus 398 cIIFIDEiDavG~---kR~~~~~~y~kqTlNQLLvEmD-GF~qNe-----GiIvigATNfpe~LD~AL~RPGRFD~~v~V 468 (752)
T KOG0734|consen 398 CIIFIDEIDAVGG---KRNPSDQHYAKQTLNQLLVEMD-GFKQNE-----GIIVIGATNFPEALDKALTRPGRFDRHVTV 468 (752)
T ss_pred eEEEEechhhhcc---cCCccHHHHHHHHHHHHHHHhc-CcCcCC-----ceEEEeccCChhhhhHHhcCCCccceeEec
Confidence 4688999972211 1222233344555555556677 666544 777775442 2222 7877766
Q ss_pred cCCCCCchhHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhh
Q psy899 265 KPDPSCSSVIRETFSAAHQYLKPELLNKIRTYISWIQNRGFDIPENLTEIVQKDFVEMRKENKKTDANDLHTLIVLARLE 344 (411)
Q Consensus 265 ~~~~~~~~~~~e~i~~~~~~~~~~~l~~lR~YLa~aR~~~~~i~ee~~~~IqddFV~~R~~~~~it~~dLh~ll~LAR~~ 344 (411)
. .||-. ...+.+..|+..... .-.++.. +| .| ..+..+-.||+.++..|-
T Consensus 469 p-~PDv~----------------GR~eIL~~yl~ki~~-~~~VD~~---ii------AR-GT~GFsGAdLaNlVNqAA-- 518 (752)
T KOG0734|consen 469 P-LPDVR----------------GRTEILKLYLSKIPL-DEDVDPK---II------AR-GTPGFSGADLANLVNQAA-- 518 (752)
T ss_pred C-CCCcc----------------cHHHHHHHHHhcCCc-ccCCCHh---Hh------cc-CCCCCchHHHHHHHHHHH--
Confidence 4 22211 134556666655432 1122222 11 22 223578899999999999
Q ss_pred ccccCCcccchhhHHHHHHhhcCCCCCCHHHHHHHHH---HHHHHHhcc
Q psy899 345 HLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALA---MEKERKSRP 390 (411)
Q Consensus 345 ~~~~~~~~~~~~~~~rLlalS~G~~~lt~e~W~~a~~---LE~~R~~R~ 390 (411)
|.|.-.|...+|..+.+.|+. |=.+|+.+.
T Consensus 519 ----------------lkAa~dga~~VtM~~LE~akDrIlMG~ERks~~ 551 (752)
T KOG0734|consen 519 ----------------LKAAVDGAEMVTMKHLEFAKDRILMGPERKSMV 551 (752)
T ss_pred ----------------HHHHhcCcccccHHHHhhhhhheeecccccccc
Confidence 999999999999998888764 455666664
No 136
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.78 E-value=3.6e+02 Score=30.14 Aligned_cols=20 Identities=10% Similarity=-0.122 Sum_probs=15.3
Q ss_pred EEEeecCCCCccchhHHHHHHHHHH
Q psy899 129 LNIFHRDLATSCSDYAQMLYDILKL 153 (411)
Q Consensus 129 LnL~g~~~P~~~~~~~s~L~~~l~~ 153 (411)
+.++| -+|.+ |+.+...+..
T Consensus 41 ~Lf~G--p~GvG---KTtlAr~lAk 60 (618)
T PRK14951 41 YLFTG--TRGVG---KTTVSRILAK 60 (618)
T ss_pred EEEEC--CCCCC---HHHHHHHHHH
Confidence 57889 88998 7777776643
No 137
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=23.69 E-value=3.2e+02 Score=31.20 Aligned_cols=21 Identities=10% Similarity=-0.110 Sum_probs=16.1
Q ss_pred EEEeecCCCCccchhHHHHHHHHHHh
Q psy899 129 LNIFHRDLATSCSDYAQMLYDILKLL 154 (411)
Q Consensus 129 LnL~g~~~P~~~~~~~s~L~~~l~~L 154 (411)
+.|+| -||.+ |+.+...+..-
T Consensus 41 ~Lf~G--P~GvG---KTTlAriLAk~ 61 (709)
T PRK08691 41 YLLTG--TRGVG---KTTIARILAKS 61 (709)
T ss_pred EEEEC--CCCCc---HHHHHHHHHHH
Confidence 68899 89999 77777766443
No 138
>PRK11507 ribosome-associated protein; Provisional
Probab=21.81 E-value=52 Score=26.41 Aligned_cols=14 Identities=14% Similarity=0.176 Sum_probs=12.2
Q ss_pred cccCCCCEEEEEeE
Q psy899 29 HRVRYPVVSKFFGT 42 (411)
Q Consensus 29 ~~~rpgd~v~~~G~ 42 (411)
-.++|||+|.|.|.
T Consensus 51 kKl~~GD~V~~~g~ 64 (70)
T PRK11507 51 CKIVAGQTVSFAGH 64 (70)
T ss_pred CCCCCCCEEEECCE
Confidence 36999999999886
No 139
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.61 E-value=4.9e+02 Score=30.76 Aligned_cols=49 Identities=20% Similarity=0.329 Sum_probs=28.9
Q ss_pred CCcEEEEecCCCCCCccccccchHHHHHHHHHHc--CccceeecCCccccccCCCeeEeec
Q psy899 193 SSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNN--QRMSYDFQFYDGTFPTDIPVLSLSD 251 (411)
Q Consensus 193 ~gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~--Q~v~YdF~y~~ie~~~Dl~vliLS~ 251 (411)
...++||||.. .+...-..+|-..||. ..+-|-|- .- .+-.++..|+||
T Consensus 119 k~KViIIDEAh-------~LT~eAqNALLKtLEEPP~~vrFILa--TT-e~~kLl~TIlSR 169 (944)
T PRK14949 119 RFKVYLIDEVH-------MLSRSSFNALLKTLEEPPEHVKFLLA--TT-DPQKLPVTVLSR 169 (944)
T ss_pred CcEEEEEechH-------hcCHHHHHHHHHHHhccCCCeEEEEE--CC-CchhchHHHHHh
Confidence 45689999996 3444567788888885 33444432 11 111245566676
No 140
>COG3923 PriC Primosomal replication protein N'' [DNA replication, recombination, and repair]
Probab=21.12 E-value=38 Score=31.59 Aligned_cols=43 Identities=19% Similarity=0.277 Sum_probs=30.5
Q ss_pred HHHHHHhhcCCCC--CCHHHHHHHHHHHHHHHhcccccccccccc
Q psy899 358 LIRLMSLSHGHSE--LTEDMWKVALAMEKERKSRPRLGLRKLEEE 400 (411)
Q Consensus 358 ~~rLlalS~G~~~--lt~e~W~~a~~LE~~R~~R~~~~~~~~~~~ 400 (411)
|++..++-.++.+ .-.+.-.+.++.=..|..||+.++-|+|+.
T Consensus 125 m~~~r~l~l~q~s~~vEqq~lqqel~~~e~RlarCr~AlekiE~~ 169 (175)
T COG3923 125 MVQDRRLQLAQQSDLVEQQKLQQELEAYEQRLARCRHALEKIENR 169 (175)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555544 233467777888889999999999999863
No 141
>PF13173 AAA_14: AAA domain
Probab=21.05 E-value=1.6e+02 Score=25.04 Aligned_cols=76 Identities=21% Similarity=0.235 Sum_probs=42.9
Q ss_pred EEEeecCCCCccchhHHHHH-HHHHHhc--cceEEeeccccccccCCcceeecCCCCcccccceee--eCCcEEEEecCC
Q psy899 129 LNIFHRDLATSCSDYAQMLY-DILKLLV--CKSHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQL--SSSTYLILDEIH 203 (411)
Q Consensus 129 LnL~g~~~P~~~~~~~s~L~-~~l~~L~--Prs~yl~lt~~~LN~~~l~P~kD~~~~~L~aG~LQL--a~gT~lvIDEt~ 203 (411)
+-|.| ..+.+ |+.|. ++++.+. ....|+++.-...+... .+. +..-.++. ..+++++|||.+
T Consensus 5 ~~l~G--~R~vG---KTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~i~iDEiq 71 (128)
T PF13173_consen 5 IILTG--PRGVG---KTTLLKQLAKDLLPPENILYINFDDPRDRRLA-DPD-------LLEYFLELIKPGKKYIFIDEIQ 71 (128)
T ss_pred EEEEC--CCCCC---HHHHHHHHHHHhcccccceeeccCCHHHHHHh-hhh-------hHHHHHHhhccCCcEEEEehhh
Confidence 56788 88888 88776 5666777 45555555433222211 000 22233332 267999999996
Q ss_pred CCCCccccccchHHHHHHHHHH
Q psy899 204 LQPGQLNNTGCLNVKALSSVVN 225 (411)
Q Consensus 204 L~eG~L~~~Gv~N~~AL~~li~ 225 (411)
.-+ ....+++.+..
T Consensus 72 ~~~--------~~~~~lk~l~d 85 (128)
T PF13173_consen 72 YLP--------DWEDALKFLVD 85 (128)
T ss_pred hhc--------cHHHHHHHHHH
Confidence 322 35566666665
No 142
>COG4019 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.04 E-value=1.5e+02 Score=26.68 Aligned_cols=32 Identities=22% Similarity=0.190 Sum_probs=22.4
Q ss_pred ChhhHHHHHHHHHHhhc-cCCCCChhHHHHHHH
Q psy899 286 KPELLNKIRTYISWIQN-RGFDIPENLTEIVQK 317 (411)
Q Consensus 286 ~~~~l~~lR~YLa~aR~-~~~~i~ee~~~~Iqd 317 (411)
.+++++.+|+||..|+. .-++=.++--+.|.+
T Consensus 22 ~eeEve~ireyi~sA~r~vV~t~N~~K~~aind 54 (156)
T COG4019 22 KEEEVEKIREYIVSAKRIVVATNNQKKFKAIND 54 (156)
T ss_pred hHHHHHHHHHHHhccceEEEecCCHHHHHHHHH
Confidence 45689999999999986 344455555555554
No 143
>PRK09087 hypothetical protein; Validated
Probab=20.86 E-value=7.3e+02 Score=23.59 Aligned_cols=30 Identities=10% Similarity=-0.063 Sum_probs=22.8
Q ss_pred EEEEeecCCCCccchhHHHHHHHHHHhccceEEeec
Q psy899 128 SLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFEL 163 (411)
Q Consensus 128 sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~l 163 (411)
.+.|.| -+|.+ |+.|.+.+..-. ...|++.
T Consensus 46 ~l~l~G--~~GsG---KThLl~~~~~~~-~~~~i~~ 75 (226)
T PRK09087 46 VVVLAG--PVGSG---KTHLASIWREKS-DALLIHP 75 (226)
T ss_pred eEEEEC--CCCCC---HHHHHHHHHHhc-CCEEecH
Confidence 479999 89999 999999877643 4456554
No 144
>cd04496 SSB_OBF SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart
Probab=20.44 E-value=92 Score=24.87 Aligned_cols=24 Identities=4% Similarity=-0.035 Sum_probs=19.2
Q ss_pred eecccCCCCEEEEEeEecCCcccc
Q psy899 27 WRHRVRYPVVSKFFGTWGSGCFQP 50 (411)
Q Consensus 27 ~~~~~rpgd~v~~~G~l~~~~~~~ 50 (411)
+...+++||+|.|.|.++...+..
T Consensus 58 ~~~~~~kG~~V~v~G~l~~~~~~~ 81 (100)
T cd04496 58 AAKYLKKGDLVYVEGRLRTRSWED 81 (100)
T ss_pred HHHHhCCCCEEEEEEEEEeceeEC
Confidence 445699999999999998774443
No 145
>TIGR03177 pilus_cpaB Flp pilus assembly protein CpaB. Members of this protein family are the CpaB protein of Flp-type pilus assembly. Similar proteins include the FlgA protein of bacterial flagellum biosynthesis.
Probab=20.31 E-value=1e+02 Score=30.09 Aligned_cols=31 Identities=10% Similarity=-0.088 Sum_probs=21.7
Q ss_pred CCCCCccccee------eecccCCCCEEEEEeEecCC
Q psy899 16 CPNGYHTRLAQ------WRHRVRYPVVSKFFGTWGSG 46 (411)
Q Consensus 16 ~~~g~~~~~i~------~~~~~rpgd~v~~~G~l~~~ 46 (411)
+++|..+=.|. ..+.++|||+|+++...+..
T Consensus 110 l~~g~rav~i~v~~~~~v~g~i~pGD~VDV~~~~~~~ 146 (261)
T TIGR03177 110 IPPGMRAVAIRVDEVTGVGGFILPGDRVDVLLTRRDD 146 (261)
T ss_pred cCCCCEEEEEEecccccccccccCCCEEEEEEEeccC
Confidence 56666444443 44679999999999886533
Done!