Query psy899
Match_columns 411
No_of_seqs 166 out of 195
Neff 5.6
Searched_HMMs 29240
Date Sat Aug 17 00:51:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy899.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/899hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f8t_A Predicted ATPase involv 100.0 5.3E-34 1.8E-38 295.8 20.2 316 4-388 115-488 (506)
2 3f9v_A Minichromosome maintena 100.0 1.7E-31 6E-36 284.4 14.1 342 4-385 185-589 (595)
3 2r44_A Uncharacterized protein 98.6 8.4E-06 2.9E-10 79.0 23.8 238 84-383 17-297 (331)
4 1ltl_A DNA replication initiat 98.6 1.4E-08 4.8E-13 98.6 3.0 75 4-85 178-265 (279)
5 3nbx_X ATPase RAVA; AAA+ ATPas 98.6 2E-06 6.9E-11 90.0 18.8 246 80-377 8-280 (500)
6 1g8p_A Magnesium-chelatase 38 98.5 2.2E-06 7.4E-11 82.9 17.0 242 96-383 26-322 (350)
7 2vl6_A SSO MCM N-TER, minichro 98.3 2.3E-07 7.8E-12 89.4 3.3 64 4-69 191-261 (268)
8 3k1j_A LON protease, ATP-depen 98.2 5.8E-05 2E-09 80.0 18.6 157 183-382 191-374 (604)
9 3syl_A Protein CBBX; photosynt 97.3 0.00091 3.1E-08 63.5 9.5 221 86-342 23-259 (309)
10 4fcw_A Chaperone protein CLPB; 97.1 0.0082 2.8E-07 56.7 13.7 131 86-230 9-149 (311)
11 1ofh_A ATP-dependent HSL prote 96.6 0.014 4.8E-07 54.7 11.5 234 86-340 7-268 (310)
12 3pfi_A Holliday junction ATP-d 96.3 0.065 2.2E-06 51.4 14.2 81 128-231 57-137 (338)
13 3pxi_A Negative regulator of g 96.1 0.027 9.1E-07 61.0 11.2 208 88-339 485-718 (758)
14 3uk6_A RUVB-like 2; hexameric 95.5 0.32 1.1E-05 46.9 15.3 56 302-382 274-329 (368)
15 1ojl_A Transcriptional regulat 95.0 0.48 1.7E-05 45.5 14.7 112 126-251 25-145 (304)
16 1r6b_X CLPA protein; AAA+, N-t 94.8 0.13 4.3E-06 55.5 11.1 127 87-230 451-587 (758)
17 3h4m_A Proteasome-activating n 94.7 0.53 1.8E-05 43.7 13.9 38 328-383 221-258 (285)
18 3hws_A ATP-dependent CLP prote 94.5 0.062 2.1E-06 52.6 7.1 135 87-227 8-157 (363)
19 2bjv_A PSP operon transcriptio 94.1 0.54 1.9E-05 43.4 12.4 109 127-251 30-149 (265)
20 1um8_A ATP-dependent CLP prote 94.0 0.062 2.1E-06 52.7 5.8 135 87-230 14-181 (376)
21 2qz4_A Paraplegin; AAA+, SPG7, 93.9 0.4 1.4E-05 43.6 10.8 37 328-382 212-248 (262)
22 1hqc_A RUVB; extended AAA-ATPa 93.8 1.3 4.5E-05 41.6 14.5 80 127-231 39-121 (324)
23 1lv7_A FTSH; alpha/beta domain 93.0 1.1 3.8E-05 41.1 12.3 37 327-381 214-250 (257)
24 3co5_A Putative two-component 92.7 0.046 1.6E-06 46.5 2.2 76 126-227 27-102 (143)
25 3pvs_A Replication-associated 92.3 0.25 8.5E-06 50.5 7.5 182 127-380 51-241 (447)
26 3bos_A Putative DNA replicatio 91.9 5 0.00017 35.2 14.9 52 303-381 190-241 (242)
27 1g41_A Heat shock protein HSLU 91.6 3.4 0.00012 42.4 14.9 66 88-159 9-78 (444)
28 3n70_A Transport activator; si 91.2 0.29 9.8E-06 41.5 5.6 76 125-224 23-100 (145)
29 3vfd_A Spastin; ATPase, microt 90.6 2.3 8E-05 41.8 12.3 96 96-203 117-217 (389)
30 3dzd_A Transcriptional regulat 90.4 2.1 7.3E-05 42.2 11.8 113 125-251 151-271 (368)
31 4b4t_M 26S protease regulatory 90.4 9.8 0.00033 38.8 16.9 187 128-381 217-420 (434)
32 1qvr_A CLPB protein; coiled co 89.9 1.9 6.6E-05 47.2 12.0 126 91-230 555-690 (854)
33 1ny5_A Transcriptional regulat 88.6 0.58 2E-05 46.5 6.1 113 125-251 159-280 (387)
34 3hu3_A Transitional endoplasmi 87.7 2.9 0.0001 43.1 10.9 88 127-225 239-333 (489)
35 2qp9_X Vacuolar protein sortin 86.4 9.2 0.00032 37.2 13.2 66 127-203 85-153 (355)
36 3b9p_A CG5977-PA, isoform A; A 85.9 4.4 0.00015 37.6 10.3 66 127-203 55-123 (297)
37 2v1u_A Cell division control p 85.9 5.3 0.00018 37.9 11.0 55 304-381 220-274 (387)
38 2z4s_A Chromosomal replication 84.3 2.6 9E-05 42.6 8.4 52 303-381 279-330 (440)
39 3d8b_A Fidgetin-like protein 1 84.3 5 0.00017 39.0 10.2 97 95-203 85-186 (357)
40 4b4t_J 26S protease regulatory 83.9 15 0.00051 37.2 13.7 189 129-384 185-390 (405)
41 1ixz_A ATP-dependent metallopr 83.3 4.4 0.00015 36.8 8.8 35 328-380 219-253 (254)
42 1in4_A RUVB, holliday junction 83.2 22 0.00075 34.0 14.2 65 292-382 184-249 (334)
43 3m6a_A ATP-dependent protease 82.2 5.7 0.0002 41.3 10.2 26 128-158 110-135 (543)
44 2ce7_A Cell division protein F 82.2 8.2 0.00028 39.8 11.2 36 328-381 219-254 (476)
45 2qby_B CDC6 homolog 3, cell di 80.3 20 0.00069 34.0 12.7 22 128-154 47-68 (384)
46 3eie_A Vacuolar protein sortin 79.6 4.3 0.00015 38.8 7.5 67 126-203 51-120 (322)
47 4b4t_L 26S protease subunit RP 79.4 21 0.00071 36.4 12.9 187 129-381 218-420 (437)
48 4b4t_I 26S protease regulatory 79.2 11 0.00036 38.8 10.6 186 129-381 219-421 (437)
49 1sxj_A Activator 1 95 kDa subu 78.8 36 0.0012 34.7 14.7 89 127-227 78-178 (516)
50 2dhr_A FTSH; AAA+ protein, hex 78.6 8.9 0.00031 39.7 10.1 64 129-203 67-133 (499)
51 1xwi_A SKD1 protein; VPS4B, AA 78.1 21 0.00071 34.2 12.0 67 127-203 46-115 (322)
52 2chg_A Replication factor C sm 77.6 32 0.0011 29.1 13.1 85 128-226 40-128 (226)
53 2c9o_A RUVB-like 1; hexameric 77.5 20 0.00069 36.0 12.2 132 195-386 297-442 (456)
54 1iy2_A ATP-dependent metallopr 75.9 13 0.00045 34.3 9.6 35 328-380 243-277 (278)
55 2r62_A Cell division protease 74.8 1.9 6.5E-05 39.6 3.4 35 328-380 216-250 (268)
56 1sxj_D Activator 1 41 kDa subu 74.8 19 0.00065 33.7 10.6 23 128-155 60-82 (353)
57 2qby_A CDC6 homolog 1, cell di 73.8 25 0.00087 33.0 11.2 23 128-155 47-69 (386)
58 2zan_A Vacuolar protein sortin 72.6 27 0.00093 35.0 11.7 97 96-203 136-237 (444)
59 4b4t_H 26S protease regulatory 72.1 16 0.00053 37.8 9.7 186 129-381 246-448 (467)
60 4b4t_K 26S protease regulatory 71.2 46 0.0016 33.7 12.9 187 129-381 209-412 (428)
61 1fnn_A CDC6P, cell division co 69.1 51 0.0018 31.1 12.2 24 128-156 46-69 (389)
62 1r6b_X CLPA protein; AAA+, N-t 68.1 29 0.001 37.0 11.3 24 127-155 208-231 (758)
63 3t15_A Ribulose bisphosphate c 65.6 11 0.00038 35.5 6.6 119 125-256 35-168 (293)
64 1l8q_A Chromosomal replication 54.4 15 0.00052 34.6 5.4 23 128-155 39-61 (324)
65 1jbk_A CLPB protein; beta barr 45.4 7.5 0.00026 32.3 1.5 23 128-155 45-67 (195)
66 2x8a_A Nuclear valosin-contain 42.2 73 0.0025 29.6 8.0 65 129-204 47-114 (274)
67 1qvr_A CLPB protein; coiled co 38.9 27 0.00094 38.0 5.0 98 128-233 193-304 (854)
68 3u61_B DNA polymerase accessor 38.0 52 0.0018 30.6 6.3 77 129-226 51-132 (324)
69 2chq_A Replication factor C sm 33.6 1.3E+02 0.0044 27.3 8.1 22 128-154 40-61 (319)
70 2kjg_A Archaeal protein SSO690 32.3 46 0.0016 26.9 4.0 55 316-389 6-60 (99)
71 1tue_A Replication protein E1; 28.4 1.1E+02 0.0038 28.1 6.6 94 128-251 60-155 (212)
72 4akg_A Glutathione S-transfera 27.8 2.6E+02 0.0089 35.0 11.3 108 127-257 646-765 (2695)
73 3pxg_A Negative regulator of g 24.9 34 0.0012 34.5 2.6 24 128-156 203-226 (468)
74 1ji8_A Dissimilatory siroheme- 24.5 66 0.0023 26.9 3.8 29 356-384 32-61 (111)
75 3or1_C Sulfite reductase GAMA; 24.1 66 0.0022 26.5 3.7 30 356-385 27-56 (105)
76 2p65_A Hypothetical protein PF 24.0 18 0.0006 30.1 0.2 23 128-155 45-67 (187)
77 1njg_A DNA polymerase III subu 23.9 3.2E+02 0.011 22.8 15.2 23 128-155 47-69 (250)
78 3cf0_A Transitional endoplasmi 20.6 28 0.00094 32.7 0.8 65 128-203 51-118 (301)
79 1iqp_A RFCS; clamp loader, ext 20.5 45 0.0015 30.6 2.3 85 128-226 48-136 (327)
80 2kjq_A DNAA-related protein; s 20.1 1.3E+02 0.0044 25.1 5.0 67 128-225 38-108 (149)
No 1
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=100.00 E-value=5.3e-34 Score=295.78 Aligned_cols=316 Identities=13% Similarity=0.098 Sum_probs=251.0
Q ss_pred cCccceeecCCC-CCCCCccccee------eec------ccCCCCEEEEEeEecCCccccccCCcccccccccccccccc
Q psy899 4 DMSSLDVQKQPP-CPNGYHTRLAQ------WRH------RVRYPVVSKFFGTWGSGCFQPCENNRVERPVMELPLKVSST 70 (411)
Q Consensus 4 ~~~~~~~q~~p~-~~~g~~~~~i~------~~~------~~rpgd~v~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (411)
|-..|.|||.|+ +|+|..|++++ ++| .++|||+|+|+||++.. ..++|.++. .+.
T Consensus 115 d~Q~IkiQE~pe~~~~G~~Prsi~v~l~~dLvd~~~~~~~~~pGd~V~v~GI~~~~---~l~a~~i~~---------~~~ 182 (506)
T 3f8t_A 115 DGALISIEGVVREVRGAERLEHAIVDTGSELVAVRLHGHRLGPGLRVEILGIVRSA---TLDALEVHK---------KDP 182 (506)
T ss_dssp TTCEEEEEEEEEEEEESSSEEEEEEECSSSEEEEECTTCCCCTTCEEEEEEEEETT---EEEEEEEEE---------ECS
T ss_pred ccEEEEEecCcccCCCCCCCceEEEEecccccCcccccccccCCCEEEEEEEEEEe---EEEEEEEEE---------cCc
Confidence 557889999997 99999999997 999 99999999999999755 345555441 233
Q ss_pred cccCCCChHHHHH--------HHHHHHHHHHhhhcCcHHHHHHHHHHHhcceeeecCCceeeeceEEEEeecCCCCccch
Q psy899 71 VSLKDISSEEIAS--------TRKDLKLLLTQLLMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSD 142 (411)
Q Consensus 71 ~~~~~is~~~~~~--------iR~~Li~~La~~l~GD~laAEyLLL~L~S~V~~r~d~~~~lG~~sLnL~g~~~P~~~~~ 142 (411)
+....+|+++.+. +++.|..+|++ ++|.+.++.+|+|.|++++.. .+|++|+.|.| .|| .
T Consensus 183 ~~~~~~t~ed~~~i~~l~~~~~~~~l~~sIap-I~G~e~vK~aLll~L~GG~~k------~rgdihVLL~G--~PG---t 250 (506)
T 3f8t_A 183 IPEVHPDPAELEEFRELADKDPLTTFARAIAP-LPGAEEVGKMLALQLFSCVGK------NSERLHVLLAG--YPV---V 250 (506)
T ss_dssp SCCCCCCHHHHHHHHHHHHSCHHHHHHHHHCC-STTCHHHHHHHHHHHTTCCSS------GGGCCCEEEES--CHH---H
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHhcc-cCCCHHHHHHHHHHHcCCccc------cCCceeEEEEC--CCC---h
Confidence 4556788877664 45689999999 999999999999999999644 68999999999 886 5
Q ss_pred hHHHHHHHH-HHhccceEEeecccc---ccccCCcceeec-CCCCcccccceeeeCCcEEEEecCCCCCCccccccchHH
Q psy899 143 YAQMLYDIL-KLLVCKSHYFELNVK---SLNETTMIPRKD-YNTNRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNV 217 (411)
Q Consensus 143 ~~s~L~~~l-~~L~Prs~yl~lt~~---~LN~~~l~P~kD-~~~~~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~N~ 217 (411)
|++|.+++ ..++|+..|++.... +|+.. .++ .+ +.+++|.+.||+||++++||. +++..+..
T Consensus 251 -KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s----~r~~tG-~~~~~G~l~LAdgGvl~lDEI-------n~~~~~~q 317 (506)
T 3f8t_A 251 -CSEILHHVLDHLAPRGVYVDLRRTELTDLTAV----LKEDRG-WALRAGAAVLADGGILAVDHL-------EGAPEPHR 317 (506)
T ss_dssp -HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEE----EEESSS-EEEEECHHHHTTTSEEEEECC-------TTCCHHHH
T ss_pred -HHHHHHHHHHHhCCCeEEecCCCCCccCceEE----EEcCCC-cccCCCeeEEcCCCeeehHhh-------hhCCHHHH
Confidence 99999999 999999999986543 34443 233 34 899999999999999999999 57888999
Q ss_pred HHHHHHHHcCcccee-------e-------------cCCccccccCCCeeEeecCCCCCCcceEEEecCCCCCchhHHHH
Q psy899 218 KALSSVVNNQRMSYD-------F-------------QFYDGTFPTDIPVLSLSDTKSMLPSDCHIKLKPDPSCSSVIRET 277 (411)
Q Consensus 218 ~AL~~li~~Q~v~Yd-------F-------------~y~~ie~~~Dl~vliLS~gKS~lp~Dl~vpl~~~~~~~~~~~e~ 277 (411)
.+|+++|++|+|+.. | ++.++ .++++|-.+||| ||+.+.+.+.++.+...++
T Consensus 318 saLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~-~~~~Lp~alLDR------FDLi~i~~d~pd~e~d~e~- 389 (506)
T 3f8t_A 318 WALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPI-ARIDLDQDFLSH------FDLIAFLGVDPRPGEPEEQ- 389 (506)
T ss_dssp HHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGG-GGCCSCHHHHTT------CSEEEETTC-----------
T ss_pred HHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCc-cccCCChHHhhh------eeeEEEecCCCChhHhhcc-
Confidence 999999999987643 1 11123 456788888888 9999999988865432111
Q ss_pred HHHhhhcCChhhHHHHHHHHHHhh--ccCCCCChhHHHHHHHHHHHHhhc----------CCCCCHHHHHHHHHHHhhhc
Q psy899 278 FSAAHQYLKPELLNKIRTYISWIQ--NRGFDIPENLTEIVQKDFVEMRKE----------NKKTDANDLHTLIVLARLEH 345 (411)
Q Consensus 278 i~~~~~~~~~~~l~~lR~YLa~aR--~~~~~i~ee~~~~IqddFV~~R~~----------~~~it~~dLh~ll~LAR~~~ 345 (411)
. ......+.+|+|+++|| ...+.+++++.++|.+.|+++|+. .-.+|++.+.+|+++|+
T Consensus 390 ---~---~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~--- 460 (506)
T 3f8t_A 390 ---D---TEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAK--- 460 (506)
T ss_dssp ----------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHH---
T ss_pred ---c---CCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHH---
Confidence 1 01226789999999999 478999999999999999999973 12699999999999999
Q ss_pred cccCCcccchhhHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHh
Q psy899 346 LRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALAMEKERKS 388 (411)
Q Consensus 346 ~~~~~~~~~~~~~~rLlalS~G~~~lt~e~W~~a~~LE~~R~~ 388 (411)
.+|...|++.++.|+-+.|..|=..=..
T Consensus 461 ---------------A~A~L~gR~~V~~eDV~~Ai~L~~~Sl~ 488 (506)
T 3f8t_A 461 ---------------AHARMRLSDDVEPEDVDIAAELVDWYLE 488 (506)
T ss_dssp ---------------HHHHHTTCSEECHHHHHHHHHHHHHHHH
T ss_pred ---------------HHHHHcCcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988654433
No 2
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.97 E-value=1.7e-31 Score=284.42 Aligned_cols=342 Identities=18% Similarity=0.191 Sum_probs=269.8
Q ss_pred cCccceeecCCC-CCCCCccccee------eecccCCCCEEEEEeEecCCccccccCCccccccccccccccc------c
Q psy899 4 DMSSLDVQKQPP-CPNGYHTRLAQ------WRHRVRYPVVSKFFGTWGSGCFQPCENNRVERPVMELPLKVSS------T 70 (411)
Q Consensus 4 ~~~~~~~q~~p~-~~~g~~~~~i~------~~~~~rpgd~v~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 70 (411)
|.-+|+|||+|+ +|+|..|++|+ ++|.++|||+|+|+||+......... +. ....|+.|+++.+ .
T Consensus 185 d~Q~i~iQe~~~~~~~g~~pr~~~v~l~~dlv~~~~pGd~v~v~Gi~~~~~~~~~~-~~-~~~~~~~~i~a~~i~~~~~~ 262 (595)
T 3f9v_A 185 DWQKAVIQERPEEVPSGQLPRQLEIILEDDLVDSARPGDRVKVTGILDIKQDSPVK-RG-SRAVFDIYMKVSSIEVSQKV 262 (595)
T ss_dssp EEEEEEEECCTTTSCTTSCCCEEEEEEEGGGTTCSCSSCEEEEEEECCCCCSSTTS-CT-TCCCCCCCCEEEEEEECCCC
T ss_pred eeEEEEEEeccccCCCCCCCceEEEEEecccccccccCCEEEEEEEEEeccccccc-CC-CcceEEEEEEEEeecccccc
Confidence 567899999997 99999999997 88899999999999999866432111 11 2366888886633 3
Q ss_pred cccCCCChHHHHHH---------HHHHHHHHHhhhcCcHHHHHHHHHHHhcceeee-cCCceeeeceEEEEeecCCCCcc
Q psy899 71 VSLKDISSEEIAST---------RKDLKLLLTQLLMGDDVAADYLICYLLSRVYCR-DEVGFALGKFSLNIFHRDLATSC 140 (411)
Q Consensus 71 ~~~~~is~~~~~~i---------R~~Li~~La~~l~GD~laAEyLLL~L~S~V~~r-~d~~~~lG~~sLnL~g~~~P~~~ 140 (411)
....++|+++.+.+ ++.|..+|++.++|.+.+++++++.|++++... .+ ...+|+.|+.|.| .||++
T Consensus 263 ~~~~~~t~~~~~~i~~~~~~~~~~~~l~~~l~~~I~G~e~vk~al~~~l~~g~~~~~~~-~~~r~~~~vLL~G--ppGtG 339 (595)
T 3f9v_A 263 LDEVIISEEDEKKIKDLAKDPWIRDRIISSIAPSIYGHWELKEALALALFGGVPKVLED-TRIRGDIHILIIG--DPGTA 339 (595)
T ss_dssp CCCCCCTTSTHHHHHTTSSTTTGGGTHHHHTSSTTSCCHHHHHHHTTTTTCCCCEETTT-TEECCSCCEEEEE--SSCCT
T ss_pred cccCCCCHHHHHHHHHHhhCcHHHHHHHHhhcchhcChHHHHHHHHHHHhCCCcccccC-CCcCCCcceEEEC--CCchH
Confidence 44457888887654 456889999999999999999999999997654 55 5889999999999 99999
Q ss_pred chhHHHHHHHHHHhccceEEeec---cccccccCCcceeecCCCCcccccceeeeCCcEEEEecCCCCCCccccccchHH
Q psy899 141 SDYAQMLYDILKLLVCKSHYFEL---NVKSLNETTMIPRKDYNTNRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNV 217 (411)
Q Consensus 141 ~~~~s~L~~~l~~L~Prs~yl~l---t~~~LN~~~l~P~kD~~~~~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~N~ 217 (411)
|++|.+++...+|+..|... +..++.+...... ..+.+.+++|++.+|+||+++|||.+ ++..+..
T Consensus 340 ---KT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~-~~g~~~~~~G~l~~A~~gil~IDEid-------~l~~~~q 408 (595)
T 3f9v_A 340 ---KSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREK-GTGEYYLEAGALVLADGGIAVIDEID-------KMRDEDR 408 (595)
T ss_dssp ---HHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGG-GTSSCSEEECHHHHHSSSEECCTTTT-------CCCSHHH
T ss_pred ---HHHHHHHHHHhCCCceecCCCccccccccceeeecc-ccccccccCCeeEecCCCcEEeehhh-------hCCHhHh
Confidence 99999999999999998753 3333333221111 12457899999999999999999995 5666889
Q ss_pred HHHHHHHHcCccceee-------------------------cCCccccccCCCeeEeecCCCCCCcceEEEecCCCCC-c
Q psy899 218 KALSSVVNNQRMSYDF-------------------------QFYDGTFPTDIPVLSLSDTKSMLPSDCHIKLKPDPSC-S 271 (411)
Q Consensus 218 ~AL~~li~~Q~v~YdF-------------------------~y~~ie~~~Dl~vliLS~gKS~lp~Dl~vpl~~~~~~-~ 271 (411)
.+|+++|++|++...- +..++..+++++..++|| ||+.+.+.+.++. +
T Consensus 409 ~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~R------FDl~~~~~~~~~~e~ 482 (595)
T 3f9v_A 409 VAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSR------FDLIFILKDQPGEQD 482 (595)
T ss_dssp HHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGG------CSCCEEECCTTHHHH
T ss_pred hhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhh------CeEEEEeCCCCCHHH
Confidence 9999999999986321 112344456788888888 9999998877632 5
Q ss_pred hhHHHHHHHhhhc--CCh-hhHHHHHHHHHHhhc-cCCCCChhHHHHHHHHHHHHhhcCC-------CCCHHHHHHHHHH
Q psy899 272 SVIRETFSAAHQY--LKP-ELLNKIRTYISWIQN-RGFDIPENLTEIVQKDFVEMRKENK-------KTDANDLHTLIVL 340 (411)
Q Consensus 272 ~~~~e~i~~~~~~--~~~-~~l~~lR~YLa~aR~-~~~~i~ee~~~~IqddFV~~R~~~~-------~it~~dLh~ll~L 340 (411)
..+++|+...|.. ..+ -..+.+|+|+++||. ..|.+++++.+.|.+.|+++|+... ++|.+++++++++
T Consensus 483 ~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirl 562 (595)
T 3f9v_A 483 RELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRI 562 (595)
T ss_dssp HHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHH
T ss_pred HHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHH
Confidence 5566776665532 112 255689999999996 6899999999999999999998653 7999999999999
Q ss_pred HhhhccccCCcccchhhHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q psy899 341 ARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALAMEKE 385 (411)
Q Consensus 341 AR~~~~~~~~~~~~~~~~~rLlalS~G~~~lt~e~W~~a~~LE~~ 385 (411)
|+ .+|...|++.++.++-+.|..|=..
T Consensus 563 a~------------------a~A~l~~~~~V~~~dv~~Ai~l~~~ 589 (595)
T 3f9v_A 563 SE------------------AYAKMALKAEVTREDAERAINIMRL 589 (595)
T ss_dssp HH------------------HHHHTTSSCCSSHHHHHHHHHHHHH
T ss_pred HH------------------HHHHHhCcCCCCHHHHHHHHHHHHH
Confidence 99 8999999999999999999887543
No 3
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.63 E-value=8.4e-06 Score=78.97 Aligned_cols=238 Identities=12% Similarity=0.085 Sum_probs=152.8
Q ss_pred HHHHHHHHHHhhhcCcHHHHHHHHHHHhcceeeecCCceeeeceEEEEeecCCCCccchhHHHHHHHHHHhccceEE-ee
Q psy899 84 TRKDLKLLLTQLLMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHY-FE 162 (411)
Q Consensus 84 iR~~Li~~La~~l~GD~laAEyLLL~L~S~V~~r~d~~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~y-l~ 162 (411)
.-+++...+...+.|.+.+.+.++..+.++ -++.|.| -||++ |+.|.+.+...++...+ +.
T Consensus 17 ~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~-------------~~vll~G--~pGtG---KT~la~~la~~~~~~~~~i~ 78 (331)
T 2r44_A 17 KIKEVIDEVGKVVVGQKYMINRLLIGICTG-------------GHILLEG--VPGLA---KTLSVNTLAKTMDLDFHRIQ 78 (331)
T ss_dssp HHHHHHHHHTTTCCSCHHHHHHHHHHHHHT-------------CCEEEES--CCCHH---HHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHhccceeCcHHHHHHHHHHHHcC-------------CeEEEEC--CCCCc---HHHHHHHHHHHhCCCeEEEe
Confidence 344566666677889999999999988764 2789999 99999 99999998887765432 33
Q ss_pred ccc----cccccCCcceeecCCCCcccccceeeeCCcEEEEecCCCCCCccccccchHHHHHHHHHHcCccceeecCCcc
Q psy899 163 LNV----KSLNETTMIPRKDYNTNRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDG 238 (411)
Q Consensus 163 lt~----~~LN~~~l~P~kD~~~~~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~~i 238 (411)
.+. +.+.+..... ...+.+.+..|.+ .+++++|||.+ ....+-..+|.++|+.+.+..+ ...+
T Consensus 79 ~~~~~~~~~l~g~~~~~-~~~~~~~~~~g~l---~~~vl~iDEi~-------~~~~~~~~~Ll~~l~~~~~~~~--g~~~ 145 (331)
T 2r44_A 79 FTPDLLPSDLIGTMIYN-QHKGNFEVKKGPV---FSNFILADEVN-------RSPAKVQSALLECMQEKQVTIG--DTTY 145 (331)
T ss_dssp CCTTCCHHHHHEEEEEE-TTTTEEEEEECTT---CSSEEEEETGG-------GSCHHHHHHHHHHHHHSEEEET--TEEE
T ss_pred cCCCCChhhcCCceeec-CCCCceEeccCcc---cccEEEEEccc-------cCCHHHHHHHHHHHhcCceeeC--CEEE
Confidence 321 1111111100 0011223445555 25899999995 4455678899999999876542 1122
Q ss_pred ccccC-----------------CCeeEeecCCCCCCcceEEEecCCCCCchhHHHHHHHhhh---------cCChhhHHH
Q psy899 239 TFPTD-----------------IPVLSLSDTKSMLPSDCHIKLKPDPSCSSVIRETFSAAHQ---------YLKPELLNK 292 (411)
Q Consensus 239 e~~~D-----------------l~vliLS~gKS~lp~Dl~vpl~~~~~~~~~~~e~i~~~~~---------~~~~~~l~~ 292 (411)
..+.+ ++.-++|+ |++.+.+.+-. .+. ..+.+..... .+..+++..
T Consensus 146 ~~~~~~~viat~np~~~~~~~~l~~~l~~R------f~~~i~i~~p~-~~~-~~~il~~~~~~~~~~~~~~~~~~~~i~~ 217 (331)
T 2r44_A 146 PLDNPFLVLATQNPVEQEGTYPLPEAQVDR------FMMKIHLTYLD-KES-ELEVMRRVSNMNFNYQVQKIVSKNDVLE 217 (331)
T ss_dssp ECCSSCEEEEEECTTCCSCCCCCCHHHHTT------SSEEEECCCCC-HHH-HHHHHHHHHCTTCCCCCCCCSCHHHHHH
T ss_pred ECCCCEEEEEecCCCcccCcccCCHHHHhh------eeEEEEcCCCC-HHH-HHHHHHhccccCcchhccccCCHHHHHH
Confidence 22222 33333344 77777776542 211 2222211111 123344555
Q ss_pred HHHHHHHhhccCCCCChhHHHHHHHHHHHHhhcCC------------CCCHHHHHHHHHHHhhhccccCCcccchhhHHH
Q psy899 293 IRTYISWIQNRGFDIPENLTEIVQKDFVEMRKENK------------KTDANDLHTLIVLARLEHLRLRPATHYQVDLIR 360 (411)
Q Consensus 293 lR~YLa~aR~~~~~i~ee~~~~IqddFV~~R~~~~------------~it~~dLh~ll~LAR~~~~~~~~~~~~~~~~~r 360 (411)
+|++. ....+++++.++|.+-+.+.|.... .++.+.+..++++|+
T Consensus 218 ~~~~~-----~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~------------------ 274 (331)
T 2r44_A 218 IRNEI-----NKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAK------------------ 274 (331)
T ss_dssp HHHHH-----HTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHH------------------
T ss_pred HHHHh-----ccCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHH------------------
Confidence 55432 3678999999999998888887542 578999999999999
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHH
Q psy899 361 LMSLSHGHSELTEDMWKVALAME 383 (411)
Q Consensus 361 LlalS~G~~~lt~e~W~~a~~LE 383 (411)
.+|...|+..++.++.+.|...=
T Consensus 275 a~A~l~g~~~v~~~dv~~~~~~v 297 (331)
T 2r44_A 275 AMAFFNNRDYVLPEDIKEVAYDI 297 (331)
T ss_dssp HHHHHTTCSBCCHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCHHHHHHHHHHH
Confidence 89999999999999999887653
No 4
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=98.59 E-value=1.4e-08 Score=98.61 Aligned_cols=75 Identities=13% Similarity=0.073 Sum_probs=48.1
Q ss_pred cCccceeecCCC-CCCCCccccee------eecccCCCCEEEEEeEecCCccccccCCccccccccccccccc------c
Q psy899 4 DMSSLDVQKQPP-CPNGYHTRLAQ------WRHRVRYPVVSKFFGTWGSGCFQPCENNRVERPVMELPLKVSS------T 70 (411)
Q Consensus 4 ~~~~~~~q~~p~-~~~g~~~~~i~------~~~~~rpgd~v~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 70 (411)
|.-+|+|||.|+ +|+|..|++|+ ++|.++|||+|+|+||++... +.. .+.|++|+++.+ .
T Consensus 178 D~Q~ikiQE~pe~vp~G~~Prsi~V~l~~dLvd~~~PGDrV~vtGI~~~~~------~~~-~~~~~~~l~a~~I~~~~~~ 250 (279)
T 1ltl_A 178 DTQTLKLQEPLENLSGGEQPRQITVVLEDDLVDTLTPGDIVRVTGTLRTVR------DER-TKRFKNFIYGNYTEFLEQE 250 (279)
T ss_dssp EEEEEEEECCSTTCCSSCCCCEEEEEEEGGGTTCCCTTCEEEEEEEEEEEE------ETT-TTEEEEEEEEEECCBC---
T ss_pred eeEEEEEecCcccCCCCCCCeEEEEEEcccccCccCCCCEEEEEEEEEEee------CCC-CceEEEEEEEEEEEEecCc
Confidence 567899999997 99999999997 889999999999999997652 111 356888886643 2
Q ss_pred cccCCCChHHHHHHH
Q psy899 71 VSLKDISSEEIASTR 85 (411)
Q Consensus 71 ~~~~~is~~~~~~iR 85 (411)
....++|+++++.|+
T Consensus 251 ~~~~~~t~ed~~~i~ 265 (279)
T 1ltl_A 251 FEELQISEEDEEKIK 265 (279)
T ss_dssp ---------------
T ss_pred cccCCCCHHHHHHHH
Confidence 344578888876554
No 5
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.57 E-value=2e-06 Score=89.97 Aligned_cols=246 Identities=14% Similarity=0.111 Sum_probs=150.2
Q ss_pred HHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHhcceeeecCCceeeeceEEEEeecCCCCccchhHHHHHHHHHHhccceE
Q psy899 80 EIASTRKDLKLLLTQLLMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSH 159 (411)
Q Consensus 80 ~~~~iR~~Li~~La~~l~GD~laAEyLLL~L~S~V~~r~d~~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~ 159 (411)
...+..+.+...+++.+.|.+.+.+.+++.+.++. |+.|.| -||++ |+.|.+.+...+++..
T Consensus 8 ~~~~~~~~l~~~l~~~ivGq~~~i~~l~~al~~~~-------------~VLL~G--pPGtG---KT~LAraLa~~l~~~~ 69 (500)
T 3nbx_X 8 LLAERISRLSSSLEKGLYERSHAIRLCLLAALSGE-------------SVFLLG--PPGIA---KSLIARRLKFAFQNAR 69 (500)
T ss_dssp HHHHHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTC-------------EEEEEC--CSSSS---HHHHHHHGGGGBSSCC
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCC-------------eeEeec--CchHH---HHHHHHHHHHHHhhhh
Confidence 34556778999999999999999999999988762 789999 99999 9999999999886532
Q ss_pred Ee---ec---cccccccC-Cccee-ecCCCCcccccceeeeCCcEEEEecCCCCCCccccccchHHHHHHHHHHcCccce
Q psy899 160 YF---EL---NVKSLNET-TMIPR-KDYNTNRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSY 231 (411)
Q Consensus 160 yl---~l---t~~~LN~~-~l~P~-kD~~~~~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~Y 231 (411)
++ .. |.+.+-+. ..... +...-.....|.+ +.+++++|||.. ..+.+-..+|.++|+.+.+..
T Consensus 70 ~f~~~~~~~~t~~dL~G~~~~~~~~~~g~~~~~~~g~l--~~~~IL~IDEI~-------r~~~~~q~~LL~~lee~~v~i 140 (500)
T 3nbx_X 70 AFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTSGYL--PEAEIVFLDEIW-------KAGPAILNTLLTAINERQFRN 140 (500)
T ss_dssp EEEEECCTTCCHHHHHCCBC----------CBCCTTSG--GGCSEEEEESGG-------GCCHHHHHHHHHHHHSSEEEC
T ss_pred HHHHHHHhcCCHHHhcCcccHHHHhhchhHHhhhccCC--CcceeeeHHhHh-------hhcHHHHHHHHHHHHHHhccC
Confidence 22 21 21222211 00000 0000011223332 234579999994 566678899999999998775
Q ss_pred eecCCccccccCCCeeEeecCC---------CCC-CcceEEEecCCCCCchhHHHHHHHhhh-c-----CCh-hhHHHHH
Q psy899 232 DFQFYDGTFPTDIPVLSLSDTK---------SML-PSDCHIKLKPDPSCSSVIRETFSAAHQ-Y-----LKP-ELLNKIR 294 (411)
Q Consensus 232 dF~y~~ie~~~Dl~vliLS~gK---------S~l-p~Dl~vpl~~~~~~~~~~~e~i~~~~~-~-----~~~-~~l~~lR 294 (411)
+ ....+.+.+++|++... .++ .|++.+.+.+.. ......+.+..... . ..+ ...+.++
T Consensus 141 ~----G~~~~~~~~~iI~ATN~lpe~~~~~~aLldRF~~~i~v~~p~-~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~ 215 (500)
T 3nbx_X 141 G----AHVEKIPMRLLVAASNELPEADSSLEALYDRMLIRLWLDKVQ-DKANFRSMLTSQQDENDNPVPDALQVTDEEYE 215 (500)
T ss_dssp S----SSEEECCCCEEEEEESSCCCTTCTTHHHHTTCCEEEECCSCC-CHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHH
T ss_pred C----CCcCCcchhhhhhccccCCCccccHHHHHHHHHHHHHHHHhh-hhhhHHHHHhcccccCCCCCCccceecHHHHH
Confidence 3 22234444454443321 011 255666664332 21111121111000 0 001 1233444
Q ss_pred HHHHHhhccCCCCChhHHHHHHHHHHHHhhc--CCCCCHHHHHHHHHHHhhhccccCCcccchhhHHHHHHhhcCCCCCC
Q psy899 295 TYISWIQNRGFDIPENLTEIVQKDFVEMRKE--NKKTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELT 372 (411)
Q Consensus 295 ~YLa~aR~~~~~i~ee~~~~IqddFV~~R~~--~~~it~~dLh~ll~LAR~~~~~~~~~~~~~~~~~rLlalS~G~~~lt 372 (411)
.|...++ ...+++++.++|.+-.-..|.. ...++.+.+..++++|+ ..|...|+..++
T Consensus 216 ~~~~~~~--~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~------------------A~A~l~gr~~Vt 275 (500)
T 3nbx_X 216 RWQKEIG--EITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQ------------------ASAFFSGRSAVA 275 (500)
T ss_dssp HHHHHHT--TCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHH------------------HHHHHTTCSBCC
T ss_pred HHHhcCC--cccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHH------------------HHHhhcCCcccc
Confidence 4444443 4678999999998776554443 33689999999999999 899999999988
Q ss_pred HHHHH
Q psy899 373 EDMWK 377 (411)
Q Consensus 373 ~e~W~ 377 (411)
.++-.
T Consensus 276 ~eDv~ 280 (500)
T 3nbx_X 276 PVDLI 280 (500)
T ss_dssp GGGGG
T ss_pred chHHH
Confidence 88655
No 6
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.55 E-value=2.2e-06 Score=82.90 Aligned_cols=242 Identities=13% Similarity=0.086 Sum_probs=148.1
Q ss_pred hcCcHHHHHHHHHHHhcceeeecCCceeeeceEEEEeecCCCCccchhHHHHHHHHHHhccceEEeec---ccccccc--
Q psy899 96 LMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFEL---NVKSLNE-- 170 (411)
Q Consensus 96 l~GD~laAEyLLL~L~S~V~~r~d~~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~l---t~~~LN~-- 170 (411)
+.|.+.+.+.+...+++. . .-++.|.| -||++ |+.|.+.+...+++..+... .....+.
T Consensus 26 i~G~~~~~~~l~~~~~~~----~-------~~~vLl~G--~~GtG---KT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 89 (350)
T 1g8p_A 26 IVGQEDMKLALLLTAVDP----G-------IGGVLVFG--DRGTG---KSTAVRALAALLPEIEAVEGCPVSSPNVEMIP 89 (350)
T ss_dssp SCSCHHHHHHHHHHHHCG----G-------GCCEEEEC--CGGGC---TTHHHHHHHHHSCCEEEETTCTTCCSSGGGSC
T ss_pred ccChHHHHHHHHHHhhCC----C-------CceEEEEC--CCCcc---HHHHHHHHHHhCcccccccccccccccccccc
Confidence 345555666655555432 1 11489999 99999 99999999998887543221 1000000
Q ss_pred --------------C------------Cccee----e--cCCCCcccccceeeeCCcEEEEecCCCCCCccccccchHHH
Q psy899 171 --------------T------------TMIPR----K--DYNTNRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVK 218 (411)
Q Consensus 171 --------------~------------~l~P~----k--D~~~~~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~N~~ 218 (411)
. .+.-. + ......+..|.+..+++++++|||.+ ....+-..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~-------~l~~~~~~ 162 (350)
T 1g8p_A 90 DWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECN-------LLEDHIVD 162 (350)
T ss_dssp TTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGG-------GSCHHHHH
T ss_pred chhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChh-------hCCHHHHH
Confidence 0 00000 0 00124566788888999999999996 34445677
Q ss_pred HHHHHHHcCccceeecCCccccccCCCeeEeecCC--CCC-----CcceEEEecCCCCCchhHHHHHHHh---hh---c-
Q psy899 219 ALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSDTK--SML-----PSDCHIKLKPDPSCSSVIRETFSAA---HQ---Y- 284 (411)
Q Consensus 219 AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~gK--S~l-----p~Dl~vpl~~~~~~~~~~~e~i~~~---~~---~- 284 (411)
+|..+|+.+.+.+.-.......+.++-++..+.-. .+- .|++.+.+.+-++.+. -.+.+... .. .
T Consensus 163 ~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~-~~~il~~~~~~~~~~~~~ 241 (350)
T 1g8p_A 163 LLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVET-RVEVIRRRDTYDADPKAF 241 (350)
T ss_dssp HHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHH-HHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHH-HHHHHHHHHhcccCchhh
Confidence 99999999876654333333344444333333321 111 1777787776543221 11111110 00 0
Q ss_pred C--ChhhHHHHHHHHHHhhc--cCCCCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhccccCCcccchhhHHH
Q psy899 285 L--KPELLNKIRTYISWIQN--RGFDIPENLTEIVQKDFVEMRKENKKTDANDLHTLIVLARLEHLRLRPATHYQVDLIR 360 (411)
Q Consensus 285 ~--~~~~l~~lR~YLa~aR~--~~~~i~ee~~~~IqddFV~~R~~~~~it~~dLh~ll~LAR~~~~~~~~~~~~~~~~~r 360 (411)
. -+.+...++++|..+|. ..+.+++++.++|.+.+-..+- -+.+.+..+++.|+
T Consensus 242 ~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~----~~~R~~~~ll~~a~------------------ 299 (350)
T 1g8p_A 242 LEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGS----DGLRGELTLLRSAR------------------ 299 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSS----CSHHHHHHHHHHHH------------------
T ss_pred ccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCC----CCccHHHHHHHHHH------------------
Confidence 0 01245567889988764 4568999999999887654432 16899999999998
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHH
Q psy899 361 LMSLSHGHSELTEDMWKVALAME 383 (411)
Q Consensus 361 LlalS~G~~~lt~e~W~~a~~LE 383 (411)
.+|...|...++.++...|..+-
T Consensus 300 ~~A~~~~~~~v~~~~v~~a~~~~ 322 (350)
T 1g8p_A 300 ALAALEGATAVGRDHLKRVATMA 322 (350)
T ss_dssp HHHHHTTCSBCCHHHHHHHHHHH
T ss_pred HHHHHcCCCcCCHHHHHHHHHHH
Confidence 89999999999999998887653
No 7
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=98.30 E-value=2.3e-07 Score=89.37 Aligned_cols=64 Identities=25% Similarity=0.268 Sum_probs=51.2
Q ss_pred cCccceeecCCC-CCCCCccccee------eecccCCCCEEEEEeEecCCccccccCCccccccccccccccc
Q psy899 4 DMSSLDVQKQPP-CPNGYHTRLAQ------WRHRVRYPVVSKFFGTWGSGCFQPCENNRVERPVMELPLKVSS 69 (411)
Q Consensus 4 ~~~~~~~q~~p~-~~~g~~~~~i~------~~~~~rpgd~v~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (411)
|.-+|+|||.|+ +|+|..|++|+ ++|.++|||+|+|+||++....... .. ...+.|+.|+++.+
T Consensus 191 D~Q~ikiQE~pe~vp~G~~Prsi~v~l~~dLvd~~~PGDrV~vtGI~~~~~~~~~-~~-~~~~~~~~yl~an~ 261 (268)
T 2vl6_A 191 DWQKAVIQERPEEVPSGQLPRQLEIILEDDLVDSARPGDRVKVTGILDIKQDSPV-KR-GSRAVFDIYMKVSS 261 (268)
T ss_dssp EEEEEEEECCGGGSCTTSCCCEEEEEEEGGGTTSSCTTCEEEEEEEEEEECSSTT-CC-SSCCEEEEEEEEEE
T ss_pred eeEEEEEEeCCCCCCCCCCCcEEEEEEccCccCcccCCCEEEEEEEEEEeecccc-cC-CCceEEEEEEEEEE
Confidence 566899999997 99999999997 8899999999999999986532211 11 22467999998866
No 8
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.17 E-value=5.8e-05 Score=80.04 Aligned_cols=157 Identities=13% Similarity=0.234 Sum_probs=102.4
Q ss_pred cccccceeeeCCcEEEEecCCCCCCccccccchHHHHHHHHHHcCccceeecC--------CccccccCCCeeEeecCC-
Q psy899 183 RLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQF--------YDGTFPTDIPVLSLSDTK- 253 (411)
Q Consensus 183 ~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y--------~~ie~~~Dl~vliLS~gK- 253 (411)
++..|.+..|+||+++|||.+ .+...-..+|..+|+++++...-.. .+...++|+.++..+...
T Consensus 191 ~i~~g~~~~a~~gvL~LDEi~-------~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~ 263 (604)
T 3k1j_A 191 RVEPGMIHRAHKGVLFIDEIA-------TLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDT 263 (604)
T ss_dssp GEECCHHHHTTTSEEEETTGG-------GSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHH
T ss_pred cccCceeeecCCCEEEEechh-------hCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHH
Confidence 468899999999999999996 3345677899999999998765111 133455666555555421
Q ss_pred --CCCC-----cc---eEEEecCCCCCchhHHHHHHHhhhcCChhhHHHHHHHHHHh----hc--cCCCCChhHHHHHHH
Q psy899 254 --SMLP-----SD---CHIKLKPDPSCSSVIRETFSAAHQYLKPELLNKIRTYISWI----QN--RGFDIPENLTEIVQK 317 (411)
Q Consensus 254 --S~lp-----~D---l~vpl~~~~~~~~~~~e~i~~~~~~~~~~~l~~lR~YLa~a----R~--~~~~i~ee~~~~Iqd 317 (411)
.|-| |+ +.+++.+. .+...+.++.|+.++ +. ..+.+++++.+.|.+
T Consensus 264 ~~~l~~~l~~R~~v~~i~i~l~~~------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~ 325 (604)
T 3k1j_A 264 VDKMHPALRSRIRGYGYEVYMRTT------------------MPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVR 325 (604)
T ss_dssp HHHSCHHHHHHHHHHSEEEECCSE------------------EECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHH
T ss_pred HhhcCHHHHHHhhccceEeecccc------------------ccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHH
Confidence 0111 11 12222111 111233344444332 21 347899999999998
Q ss_pred HHHHHhhcC--CCCCHHHHHHHHHHHhhhccccCCcccchhhHHHHHHhhcCCCCCCHHHHHHHHHH
Q psy899 318 DFVEMRKEN--KKTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALAM 382 (411)
Q Consensus 318 dFV~~R~~~--~~it~~dLh~ll~LAR~~~~~~~~~~~~~~~~~rLlalS~G~~~lt~e~W~~a~~L 382 (411)
.+..+--.. -+++.+++..+++.|+ .+|...|...++.++-..|...
T Consensus 326 ~~~r~~g~r~~l~~~~R~l~~llr~A~------------------~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 326 EAQKRAGRKGHLTLRLRDLGGIVRAAG------------------DIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHTTCSTTEEECCHHHHHHHHHHHH------------------HHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHhhhhccccccccCHHHHHHHHHHHH------------------HHHHhcCcccccHHHHHHHHHh
Confidence 885332111 1578999999999999 8999999999999999988854
No 9
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.27 E-value=0.00091 Score=63.46 Aligned_cols=221 Identities=14% Similarity=0.089 Sum_probs=120.2
Q ss_pred HHHHHHHHhhhcCcHHHHHHHHHHH----hcceeeecCCceeeeceEEEEeecCCCCccchhHHHHHHHHHHhccc----
Q psy899 86 KDLKLLLTQLLMGDDVAADYLICYL----LSRVYCRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCK---- 157 (411)
Q Consensus 86 ~~Li~~La~~l~GD~laAEyLLL~L----~S~V~~r~d~~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Pr---- 157 (411)
+++...|...+.|...+++.+.=.+ +...+.+.+-....+..++.|+| -||++ |+.+.+.+...+..
T Consensus 23 ~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G--~~GtG---KT~la~~la~~l~~~~~~ 97 (309)
T 3syl_A 23 KEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTG--NPGTG---KTTVALKMAGLLHRLGYV 97 (309)
T ss_dssp HHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEE--CTTSS---HHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEEC--CCCCC---HHHHHHHHHHHHHhcCCc
Confidence 4567777777889888888775221 11211111111124566899999 99999 88888777665532
Q ss_pred --eEEeeccccccccCCcceeecCCCCcccccceeeeCCcEEEEecCC-CC-CCccccccchHHHHHHHHHHcCccc--e
Q psy899 158 --SHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQLSSSTYLILDEIH-LQ-PGQLNNTGCLNVKALSSVVNNQRMS--Y 231 (411)
Q Consensus 158 --s~yl~lt~~~LN~~~l~P~kD~~~~~L~aG~LQLa~gT~lvIDEt~-L~-eG~L~~~Gv~N~~AL~~li~~Q~v~--Y 231 (411)
..++.++...+.+..+ .....-..+.+..+.+++++|||.+ |. .++=++.+.+-..+|..+|+...-. +
T Consensus 98 ~~~~~~~~~~~~l~~~~~-----g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~ 172 (309)
T 3syl_A 98 RKGHLVSVTRDDLVGQYI-----GHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVV 172 (309)
T ss_dssp SSCCEEEECGGGTCCSST-----TCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEE
T ss_pred CCCcEEEEcHHHhhhhcc-----cccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEE
Confidence 1233333333322111 0111123566667789999999998 32 1111234556677888888865311 1
Q ss_pred eecCCc--cccccCCCeeEeecCCCCCCcceEEEecCCCCCchhHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCCh
Q psy899 232 DFQFYD--GTFPTDIPVLSLSDTKSMLPSDCHIKLKPDPSCSSVIRETFSAAHQYLKPELLNKIRTYISWIQNRGFDIPE 309 (411)
Q Consensus 232 dF~y~~--ie~~~Dl~vliLS~gKS~lp~Dl~vpl~~~~~~~~~~~e~i~~~~~~~~~~~l~~lR~YLa~aR~~~~~i~e 309 (411)
-+--.. +..-..++..+.|+ |+..+.+.+-.. ++....++.|+.. ....+++
T Consensus 173 i~~~~~~~~~~~~~~~~~l~~R------~~~~i~~~~~~~-----------------~~~~~il~~~l~~---~~~~~~~ 226 (309)
T 3syl_A 173 ILAGYADRMENFFQSNPGFRSR------IAHHIEFPDYSD-----------------EELFEIAGHMLDD---QNYQMTP 226 (309)
T ss_dssp EEEECHHHHHHHHHHSTTHHHH------EEEEEEECCCCH-----------------HHHHHHHHHHHHH---TTCEECH
T ss_pred EEeCChHHHHHHHhhCHHHHHh------CCeEEEcCCcCH-----------------HHHHHHHHHHHHH---cCCCCCH
Confidence 100000 00000111223333 555555544321 1123344544433 4578899
Q ss_pred hHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q psy899 310 NLTEIVQKDFVEMRKENKKTDANDLHTLIVLAR 342 (411)
Q Consensus 310 e~~~~IqddFV~~R~~~~~it~~dLh~ll~LAR 342 (411)
++.+.+.+.+-..+....+-+.+++..++.-|-
T Consensus 227 ~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~ 259 (309)
T 3syl_A 227 EAETALRAYIGLRRNQPHFANARSIRNALDRAR 259 (309)
T ss_dssp HHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHH
Confidence 999999887776666555667888888877555
No 10
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.05 E-value=0.0082 Score=56.72 Aligned_cols=131 Identities=11% Similarity=0.084 Sum_probs=82.2
Q ss_pred HHHHHHHHhhhcCcHHHHHHHHHHHhcceeeecCCceeeeceEEEEeecCCCCccchhHHHHHHHHHHhccceE--Eeec
Q psy899 86 KDLKLLLTQLLMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSH--YFEL 163 (411)
Q Consensus 86 ~~Li~~La~~l~GD~laAEyLLL~L~S~V~~r~d~~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~--yl~l 163 (411)
..+...+...+.|...+.+.+...+-.....-.+...+ .-++.|.| -||++ |+.+.+.+...+++.. ++.+
T Consensus 9 ~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~--~~~~ll~G--~~GtG---Kt~la~~la~~~~~~~~~~~~~ 81 (311)
T 4fcw_A 9 LRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRP--IGSFLFLG--PTGVG---KTELAKTLAATLFDTEEAMIRI 81 (311)
T ss_dssp HTHHHHHHTTCCSCHHHHHHHHHHHHHHHHTCSCTTSC--SEEEEEES--CSSSS---HHHHHHHHHHHHHSCGGGEEEE
T ss_pred HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCCCCCC--ceEEEEEC--CCCcC---HHHHHHHHHHHHcCCCcceEEe
Confidence 45777888888899999888887776542211111122 23789999 99999 9999998888775431 2222
Q ss_pred cccccccCCcc-----eeecC---CCCcccccceeeeCCcEEEEecCCCCCCccccccchHHHHHHHHHHcCccc
Q psy899 164 NVKSLNETTMI-----PRKDY---NTNRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMS 230 (411)
Q Consensus 164 t~~~LN~~~l~-----P~kD~---~~~~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~ 230 (411)
....+...... ....+ .....-.+++.-+++++++|||.+ ++...-..+|..+|+...+.
T Consensus 82 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~-------~l~~~~~~~Ll~~le~~~~~ 149 (311)
T 4fcw_A 82 DMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIE-------KAHPDVFNILLQMLDDGRLT 149 (311)
T ss_dssp EGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGG-------GSCHHHHHHHHHHHHHSEEE
T ss_pred ecccccccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChh-------hcCHHHHHHHHHHHhcCEEE
Confidence 22222211100 00011 111233456667788999999995 55667888999999988765
No 11
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.63 E-value=0.014 Score=54.73 Aligned_cols=234 Identities=13% Similarity=0.178 Sum_probs=119.6
Q ss_pred HHHHHHHHhhhcCcHHHHHHHHHHHhcceeeecCCc--e--eeeceEEEEeecCCCCccchhHHHHHHHHHHhccceEEe
Q psy899 86 KDLKLLLTQLLMGDDVAADYLICYLLSRVYCRDEVG--F--ALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYF 161 (411)
Q Consensus 86 ~~Li~~La~~l~GD~laAEyLLL~L~S~V~~r~d~~--~--~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl 161 (411)
+++...|.+.+.|...+++.+...+.... .+..-. . ....-++.|.| -||++ |+.+.+.+...+... ++
T Consensus 7 ~~l~~~l~~~i~G~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~vll~G--~~GtG---KT~la~~la~~l~~~-~~ 79 (310)
T 1ofh_A 7 REIVSELDQHIIGQADAKRAVAIALRNRW-RRMQLQEPLRHEVTPKNILMIG--PTGVG---KTEIARRLAKLANAP-FI 79 (310)
T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHHHHHH-HTTSSCHHHHHHCCCCCEEEEC--CTTSS---HHHHHHHHHHHHTCC-EE
T ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHHH-hhhhhcccccccCCCceEEEEC--CCCCC---HHHHHHHHHHHhCCC-EE
Confidence 34777888889999999999987776521 111100 0 11245789999 99999 999988887776442 23
Q ss_pred eccccccccCCcceeecCCC-Ccc---cccceeee-CCcEEEEecCC-CCCCccccccch-----HHHHHHHHHHcCccc
Q psy899 162 ELNVKSLNETTMIPRKDYNT-NRL---KSGLLQLS-SSTYLILDEIH-LQPGQLNNTGCL-----NVKALSSVVNNQRMS 230 (411)
Q Consensus 162 ~lt~~~LN~~~l~P~kD~~~-~~L---~aG~LQLa-~gT~lvIDEt~-L~eG~L~~~Gv~-----N~~AL~~li~~Q~v~ 230 (411)
.++...+....+........ ..+ ..|.+..+ ++++++|||.+ |.... ...|.. -..+|..+++...+.
T Consensus 80 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~-~~~~~~~~~~~~~~~Ll~~le~~~~~ 158 (310)
T 1ofh_A 80 KVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKG-EYSGADVSREGVQRDLLPLVEGSTVS 158 (310)
T ss_dssp EEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCS-SCCSSHHHHHHHHHHHHHHHHCCEEE
T ss_pred EEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccc-cccccchhHHHHHHHHHHHhcCCeEe
Confidence 33333332211111100000 000 12344443 47899999998 43321 111111 156788888876543
Q ss_pred eeecCCccccccCCCeeEeec-----CCC-CCC-----cceEEEecCCCCCchhHHHHHHHhhhcCChhhHHHHHHHHHH
Q psy899 231 YDFQFYDGTFPTDIPVLSLSD-----TKS-MLP-----SDCHIKLKPDPSCSSVIRETFSAAHQYLKPELLNKIRTYISW 299 (411)
Q Consensus 231 YdF~y~~ie~~~Dl~vliLS~-----gKS-~lp-----~Dl~vpl~~~~~~~~~~~e~i~~~~~~~~~~~l~~lR~YLa~ 299 (411)
.. +. ..+.+--++|.+. ... +.| |+..+.+.+-.. ..+.+.+... .. ..++.|...
T Consensus 159 ~~--~~--~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~--~~~~~il~~~----~~---~~~~~~~~~ 225 (310)
T 1ofh_A 159 TK--HG--MVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSA--ADFERILTEP----HA---SLTEQYKAL 225 (310)
T ss_dssp ET--TE--EEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCH--HHHHHHHHSS----TT---CHHHHHHHH
T ss_pred cc--cc--cccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCH--HHHHHHHHhh----HH---HHHHHHHHH
Confidence 21 11 1111111222221 111 111 666666665432 2122222100 00 122333333
Q ss_pred hhc--cCCCCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q psy899 300 IQN--RGFDIPENLTEIVQKDFVEMRKENKKTDANDLHTLIVL 340 (411)
Q Consensus 300 aR~--~~~~i~ee~~~~IqddFV~~R~~~~~it~~dLh~ll~L 340 (411)
++. ..+.+++++.++|.+..-..++....-+.+++..++.-
T Consensus 226 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~ 268 (310)
T 1ofh_A 226 MATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMER 268 (310)
T ss_dssp HHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHH
T ss_pred HHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHH
Confidence 332 34679999999998877665544334567888887763
No 12
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.31 E-value=0.065 Score=51.37 Aligned_cols=81 Identities=17% Similarity=0.160 Sum_probs=52.1
Q ss_pred EEEEeecCCCCccchhHHHHHHHHHHhccceEEeeccccccccCCcceeecCCCCcccccceeeeCCcEEEEecCCCCCC
Q psy899 128 SLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQLSSSTYLILDEIHLQPG 207 (411)
Q Consensus 128 sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt~~~LN~~~l~P~kD~~~~~L~aG~LQLa~gT~lvIDEt~L~eG 207 (411)
++.|+| -||++ |+.|.+.+..-..... +.++...+ +. ...+....-.++++++++|||.+
T Consensus 57 ~vll~G--~~GtG---KT~la~~ia~~~~~~~-~~~~~~~~------~~----~~~~~~~~~~~~~~~vl~lDEi~---- 116 (338)
T 3pfi_A 57 HILFSG--PAGLG---KTTLANIISYEMSANI-KTTAAPMI------EK----SGDLAAILTNLSEGDILFIDEIH---- 116 (338)
T ss_dssp CEEEEC--STTSS---HHHHHHHHHHHTTCCE-EEEEGGGC------CS----HHHHHHHHHTCCTTCEEEEETGG----
T ss_pred eEEEEC--cCCCC---HHHHHHHHHHHhCCCe-EEecchhc------cc----hhHHHHHHHhccCCCEEEEechh----
Confidence 589999 99999 9999988877654332 22221111 00 11233333346899999999996
Q ss_pred ccccccchHHHHHHHHHHcCccce
Q psy899 208 QLNNTGCLNVKALSSVVNNQRMSY 231 (411)
Q Consensus 208 ~L~~~Gv~N~~AL~~li~~Q~v~Y 231 (411)
.+...-..+|..+++...+..
T Consensus 117 ---~l~~~~~~~Ll~~l~~~~~~~ 137 (338)
T 3pfi_A 117 ---RLSPAIEEVLYPAMEDYRLDI 137 (338)
T ss_dssp ---GCCHHHHHHHHHHHHTSCC--
T ss_pred ---hcCHHHHHHHHHHHHhccchh
Confidence 444567788899999887653
No 13
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.07 E-value=0.027 Score=61.00 Aligned_cols=208 Identities=12% Similarity=0.082 Sum_probs=114.9
Q ss_pred HHHHHHhhhcCcHHHHHHHHHHHhcceeeecCCceeeeceEEEEeecCCCCccchhHHHHHHHHHHhccce--EEeeccc
Q psy899 88 LKLLLTQLLMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKS--HYFELNV 165 (411)
Q Consensus 88 Li~~La~~l~GD~laAEyLLL~L~S~V~~r~d~~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs--~yl~lt~ 165 (411)
+-..+...+.|...+.+.+.-.+........+...++| ++.|.| -||++ |+.+.+.+...+.++ .++.+..
T Consensus 485 l~~~l~~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~--~~Ll~G--p~GtG---KT~lA~ala~~l~~~~~~~i~i~~ 557 (758)
T 3pxi_A 485 MENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIG--SFIFLG--PTGVG---KTELARALAESIFGDEESMIRIDM 557 (758)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSE--EEEEES--CTTSS---HHHHHHHHHHHHHSCTTCEEEEEG
T ss_pred HHHHHhCcCcChHHHHHHHHHHHHHHHcccCCCCCCce--EEEEEC--CCCCC---HHHHHHHHHHHhcCCCcceEEEec
Confidence 34455666788888887766655433111111113333 789999 99999 999999998887432 2222322
Q ss_pred cccccCCcceeecCCCCcccccceeeeCCcEEEEecCCCCCCccccccchHHHHHHHHHHcCccceeecCCccccccCCC
Q psy899 166 KSLNETTMIPRKDYNTNRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIP 245 (411)
Q Consensus 166 ~~LN~~~l~P~kD~~~~~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~ 245 (411)
..+...... ....-.+++.-.++++++|||.+ ++...-...|..+|+..++.-. .... ....|+.
T Consensus 558 s~~~~~~~~------~~~~l~~~~~~~~~~vl~lDEi~-------~~~~~~~~~Ll~~le~g~~~~~-~g~~-~~~~~~~ 622 (758)
T 3pxi_A 558 SEYMEKHST------SGGQLTEKVRRKPYSVVLLDAIE-------KAHPDVFNILLQVLEDGRLTDS-KGRT-VDFRNTI 622 (758)
T ss_dssp GGGCSSCCC------C---CHHHHHHCSSSEEEEECGG-------GSCHHHHHHHHHHHHHSBCC------C-CBCTTCE
T ss_pred hhccccccc------ccchhhHHHHhCCCeEEEEeCcc-------ccCHHHHHHHHHHhccCeEEcC-CCCE-eccCCeE
Confidence 222221111 11223455666788999999994 5666788899999999876532 1111 2224454
Q ss_pred eeEeecCCC-------------CCC-----cceEEEecCCCCCchhHHHHHHHhhhcCChhhHHHHHHHHHHh----h--
Q psy899 246 VLSLSDTKS-------------MLP-----SDCHIKLKPDPSCSSVIRETFSAAHQYLKPELLNKIRTYISWI----Q-- 301 (411)
Q Consensus 246 vliLS~gKS-------------~lp-----~Dl~vpl~~~~~~~~~~~e~i~~~~~~~~~~~l~~lR~YLa~a----R-- 301 (411)
++..|...+ |-| +|.+|++.|-.. . +....++.++... +
T Consensus 623 iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~--~---------------~~~~i~~~~l~~~~~~~~~~ 685 (758)
T 3pxi_A 623 LIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEK--K---------------HLTEIVSLMSDQLTKRLKEQ 685 (758)
T ss_dssp EEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CH--H---------------HHHHHHHHHHHHHHHHHHTT
T ss_pred EEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCH--H---------------HHHHHHHHHHHHHHHHHHhC
Confidence 444444211 222 566666554431 1 1222334444332 1
Q ss_pred ccCCCCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q psy899 302 NRGFDIPENLTEIVQKDFVEMRKENKKTDANDLHTLIV 339 (411)
Q Consensus 302 ~~~~~i~ee~~~~IqddFV~~R~~~~~it~~dLh~ll~ 339 (411)
.....+++++.++|.+ +.-+.+.+++.|.+++.
T Consensus 686 ~~~~~~~~~a~~~l~~-----~~~~~~~~~R~L~~~i~ 718 (758)
T 3pxi_A 686 DLSIELTDAAKAKVAE-----EGVDLEYGARPLRRAIQ 718 (758)
T ss_dssp TCEEEECHHHHHHHHG-----GGCCTTTTTTTHHHHHH
T ss_pred CCeEEECHHHHHHHHH-----hCCCCCCCChHHHHHHH
Confidence 2346788888887743 22345678888888876
No 14
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.51 E-value=0.32 Score=46.86 Aligned_cols=56 Identities=18% Similarity=0.183 Sum_probs=43.1
Q ss_pred ccCCCCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhccccCCcccchhhHHHHHHhhcCCCCCCHHHHHHHHH
Q psy899 302 NRGFDIPENLTEIVQKDFVEMRKENKKTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALA 381 (411)
Q Consensus 302 ~~~~~i~ee~~~~IqddFV~~R~~~~~it~~dLh~ll~LAR~~~~~~~~~~~~~~~~~rLlalS~G~~~lt~e~W~~a~~ 381 (411)
.....+++++.+.|.+..-. =+.+++..++.-|. ..|...|...+|.++++.|..
T Consensus 274 ~~~~~~~~~~l~~l~~~~~~-------G~~r~~~~ll~~a~------------------~~A~~~~~~~It~~~v~~a~~ 328 (368)
T 3uk6_A 274 EEDVEMSEDAYTVLTRIGLE-------TSLRYAIQLITAAS------------------LVCRKRKGTEVQVDDIKRVYS 328 (368)
T ss_dssp HTTCCBCHHHHHHHHHHHHH-------SCHHHHHHHHHHHH------------------HHHHHTTCSSBCHHHHHHHHH
T ss_pred HcCCCCCHHHHHHHHHHhcC-------CCHHHHHHHHHHHH------------------HHHHHhCCCCCCHHHHHHHHH
Confidence 34577888888877543211 25688888888777 788889999999999999987
Q ss_pred H
Q psy899 382 M 382 (411)
Q Consensus 382 L 382 (411)
+
T Consensus 329 ~ 329 (368)
T 3uk6_A 329 L 329 (368)
T ss_dssp H
T ss_pred H
Confidence 6
No 15
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.98 E-value=0.48 Score=45.49 Aligned_cols=112 Identities=17% Similarity=0.223 Sum_probs=68.0
Q ss_pred ceEEEEeecCCCCccchhHHHHHHHHHHhccceE--EeeccccccccC----C-cceee-cC-CCCcccccceeeeCCcE
Q psy899 126 KFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSH--YFELNVKSLNET----T-MIPRK-DY-NTNRLKSGLLQLSSSTY 196 (411)
Q Consensus 126 ~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~--yl~lt~~~LN~~----~-l~P~k-D~-~~~~L~aG~LQLa~gT~ 196 (411)
+.++.|.| -||++ |+.+.+.+....++.. ++.+....+... . |-..+ .+ +...-..|.+..++||.
T Consensus 25 ~~~vLi~G--e~GtG---Kt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~~~~g~~~~a~~g~ 99 (304)
T 1ojl_A 25 DATVLIHG--DSGTG---KELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 99 (304)
T ss_dssp TSCEEEES--CTTSC---HHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---CCCCCHHHHHTTSE
T ss_pred CCcEEEEC--CCCch---HHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhhhhcCHHHhcCCCE
Confidence 45789999 99999 9999999999887542 222222221110 0 00000 01 01123568888999999
Q ss_pred EEEecCCCCCCccccccchHHHHHHHHHHcCccceeecCCccccccCCCeeEeec
Q psy899 197 LILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSD 251 (411)
Q Consensus 197 lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~ 251 (411)
++|||.+ .+...-...|..+++...+.- -......+.|+.++..+.
T Consensus 100 L~LDEi~-------~l~~~~q~~Ll~~l~~~~~~~--~g~~~~~~~~~riI~atn 145 (304)
T 1ojl_A 100 LFLDEIG-------DISPLMQVRLLRAIQEREVQR--VGSNQTISVDVRLIAATH 145 (304)
T ss_dssp EEEESCT-------TCCHHHHHHHHHHHHSSBCCB--TTBCCCCBCCCEEEEEES
T ss_pred EEEeccc-------cCCHHHHHHHHHHHhcCEeee--cCCcccccCCeEEEEecC
Confidence 9999996 344456677888888765421 122344567777666665
No 16
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.83 E-value=0.13 Score=55.50 Aligned_cols=127 Identities=18% Similarity=0.164 Sum_probs=77.9
Q ss_pred HHHHHHHhhhcCcHHHHHHHHHHHhccee-eecCCceeeeceEEEEeecCCCCccchhHHHHHHHHHHhccceEEeeccc
Q psy899 87 DLKLLLTQLLMGDDVAADYLICYLLSRVY-CRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNV 165 (411)
Q Consensus 87 ~Li~~La~~l~GD~laAEyLLL~L~S~V~-~r~d~~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt~ 165 (411)
.+...|...+.|...+.+.+.-.+-..-. ..... .+.| ++.|.| -||++ |+.+.+.+...+.. .++.+..
T Consensus 451 ~l~~~l~~~v~g~~~~~~~l~~~i~~~~~g~~~~~-~p~~--~~ll~G--~~GtG---KT~la~~la~~l~~-~~~~i~~ 521 (758)
T 1r6b_X 451 NLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEH-KPVG--SFLFAG--PTGVG---KTEVTVQLSKALGI-ELLRFDM 521 (758)
T ss_dssp HHHHHHTTTSCSCHHHHHHHHHHHHHHHTTCSCTT-SCSE--EEEEEC--STTSS---HHHHHHHHHHHHTC-EEEEEEG
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHHhcccCCCC-CCce--EEEEEC--CCCCc---HHHHHHHHHHHhcC-CEEEEec
Confidence 35556666788888887776554432100 01111 2333 789999 99999 99999988888753 3333332
Q ss_pred cccccC----Cc--ceeecC---CCCcccccceeeeCCcEEEEecCCCCCCccccccchHHHHHHHHHHcCccc
Q psy899 166 KSLNET----TM--IPRKDY---NTNRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMS 230 (411)
Q Consensus 166 ~~LN~~----~l--~P~kD~---~~~~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~ 230 (411)
..+... .+ .|. .| +..+.-.+.+..+++++++|||.+ ++..+-..+|..+|+...+.
T Consensus 522 s~~~~~~~~~~l~g~~~-g~~g~~~~~~l~~~~~~~~~~vl~lDEi~-------~~~~~~~~~Ll~~le~~~~~ 587 (758)
T 1r6b_X 522 SEYMERHTVSRLIGAPP-GYVGFDQGGLLTDAVIKHPHAVLLLDEIE-------KAHPDVFNILLQVMDNGTLT 587 (758)
T ss_dssp GGCSSSSCCSSSCCCCS-CSHHHHHTTHHHHHHHHCSSEEEEEETGG-------GSCHHHHHHHHHHHHHSEEE
T ss_pred hhhcchhhHhhhcCCCC-CCcCccccchHHHHHHhCCCcEEEEeCcc-------ccCHHHHHHHHHHhcCcEEE
Confidence 222111 11 011 12 112233566777889999999995 56667888999999988765
No 17
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.75 E-value=0.53 Score=43.66 Aligned_cols=38 Identities=13% Similarity=0.101 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHHhhhccccCCcccchhhHHHHHHhhcCCCCCCHHHHHHHHHHH
Q psy899 328 KTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALAME 383 (411)
Q Consensus 328 ~it~~dLh~ll~LAR~~~~~~~~~~~~~~~~~rLlalS~G~~~lt~e~W~~a~~LE 383 (411)
..+.+++..++.-|. ..|+..|...++.+++..|.+--
T Consensus 221 g~~~~~i~~l~~~a~------------------~~a~~~~~~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 221 GCVGAELKAICTEAG------------------MNAIRELRDYVTMDDFRKAVEKI 258 (285)
T ss_dssp TCCHHHHHHHHHHHH------------------HHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH------------------HHHHHhccCcCCHHHHHHHHHHH
Confidence 468899999999998 89999999999999999887543
No 18
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.52 E-value=0.062 Score=52.56 Aligned_cols=135 Identities=16% Similarity=0.165 Sum_probs=77.1
Q ss_pred HHHHHHHhhhcCcHHHHHHHHHHHhcceeeecC----CceeeeceEEEEeecCCCCccchhHHHHHHHHHHhccceEEee
Q psy899 87 DLKLLLTQLLMGDDVAADYLICYLLSRVYCRDE----VGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFE 162 (411)
Q Consensus 87 ~Li~~La~~l~GD~laAEyLLL~L~S~V~~r~d----~~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~ 162 (411)
.+...|...+.|...+++.+.-.+......... .......-++.|.| -||++ |+.+.+.+...+. ..++.
T Consensus 8 ~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~G--ppGtG---KT~la~~ia~~~~-~~~~~ 81 (363)
T 3hws_A 8 EIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIG--PTGSG---KTLLAETLARLLD-VPFTM 81 (363)
T ss_dssp HHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEEC--CTTSS---HHHHHHHHHHHTT-CCEEE
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEEC--CCCCC---HHHHHHHHHHHcC-CCEEE
Confidence 355677777899999999888777533221111 11233566899999 99999 9999998888774 33444
Q ss_pred ccccccccCCcceeecCC--C--CcccccceeeeCCcEEEEecCC-CCCCccc------cccchHHHHHHHHHHcC
Q psy899 163 LNVKSLNETTMIPRKDYN--T--NRLKSGLLQLSSSTYLILDEIH-LQPGQLN------NTGCLNVKALSSVVNNQ 227 (411)
Q Consensus 163 lt~~~LN~~~l~P~kD~~--~--~~L~aG~LQLa~gT~lvIDEt~-L~eG~L~------~~Gv~N~~AL~~li~~Q 227 (411)
++...+....+.-..... + ..-..|.+..+++++++|||.+ |....-+ ..|..-..+|-.+|+..
T Consensus 82 ~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~ 157 (363)
T 3hws_A 82 ADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGT 157 (363)
T ss_dssp EEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC
T ss_pred echHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCc
Confidence 443333221111000000 0 0112233445678999999997 4431100 00111578889999843
No 19
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.15 E-value=0.54 Score=43.37 Aligned_cols=109 Identities=12% Similarity=0.149 Sum_probs=64.7
Q ss_pred eEEEEeecCCCCccchhHHHHHHHHHHhccc----eEEeeccccccccC-----Ccce-eecC-CCCcccccceeeeCCc
Q psy899 127 FSLNIFHRDLATSCSDYAQMLYDILKLLVCK----SHYFELNVKSLNET-----TMIP-RKDY-NTNRLKSGLLQLSSST 195 (411)
Q Consensus 127 ~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Pr----s~yl~lt~~~LN~~-----~l~P-~kD~-~~~~L~aG~LQLa~gT 195 (411)
.++.|.| -||++ |+.+.+.+....++ .++++.+ .+... .+-. +..+ +...-..|.+..++++
T Consensus 30 ~~vll~G--~~GtG---Kt~la~~i~~~~~~~~~~~~~v~~~--~~~~~~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~ 102 (265)
T 2bjv_A 30 KPVLIIG--ERGTG---KELIASRLHYLSSRWQGPFISLNCA--ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGG 102 (265)
T ss_dssp SCEEEEC--CTTSC---HHHHHHHHHHTSTTTTSCEEEEEGG--GSCHHHHHHHHHCCC---------CCCCHHHHTTTS
T ss_pred CCEEEEC--CCCCc---HHHHHHHHHHhcCccCCCeEEEecC--CCChhHHHHHhcCCcccccccccccccchhhhcCCc
Confidence 5789999 99999 99999999988874 3333322 22110 0000 0011 0111246788889999
Q ss_pred EEEEecCCCCCCccccccchHHHHHHHHHHcCccceeecCCccccccCCCeeEeec
Q psy899 196 YLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSD 251 (411)
Q Consensus 196 ~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~ 251 (411)
.++|||.+ .+...-...|..+++.+.+.- .......+.++.++..|.
T Consensus 103 ~l~lDEi~-------~l~~~~q~~Ll~~l~~~~~~~--~g~~~~~~~~~~iI~atn 149 (265)
T 2bjv_A 103 TLFLDELA-------TAPMMVQEKLLRVIEYGELER--VGGSQPLQVNVRLVCATN 149 (265)
T ss_dssp EEEEESGG-------GSCHHHHHHHHHHHHHCEECC--CCC--CEECCCEEEEEES
T ss_pred EEEEechH-------hcCHHHHHHHHHHHHhCCeec--CCCcccccCCeEEEEecC
Confidence 99999996 333456678888998875421 111234456666666555
No 20
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.98 E-value=0.062 Score=52.73 Aligned_cols=135 Identities=15% Similarity=0.136 Sum_probs=78.0
Q ss_pred HHHHHHHhhhcCcHHHHHHHHHHHhcceeeecCC-------------------ceeeeceEEEEeecCCCCccchhHHHH
Q psy899 87 DLKLLLTQLLMGDDVAADYLICYLLSRVYCRDEV-------------------GFALGKFSLNIFHRDLATSCSDYAQML 147 (411)
Q Consensus 87 ~Li~~La~~l~GD~laAEyLLL~L~S~V~~r~d~-------------------~~~lG~~sLnL~g~~~P~~~~~~~s~L 147 (411)
.+...|...+.|.+.|++.|...+.........| ....+..++.|.| -||++ |+.+
T Consensus 14 ~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~G--p~GtG---KT~l 88 (376)
T 1um8_A 14 ELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIG--PTGSG---KTLM 88 (376)
T ss_dssp HHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEEC--CTTSS---HHHH
T ss_pred HHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEEC--CCCCC---HHHH
Confidence 4667788888999999999988775321111111 0234567899999 99999 9999
Q ss_pred HHHHHHhccceEEeeccccccccCCcceeecCCCCcc-------cccceeeeCCcEEEEecCC-CCCC------cccccc
Q psy899 148 YDILKLLVCKSHYFELNVKSLNETTMIPRKDYNTNRL-------KSGLLQLSSSTYLILDEIH-LQPG------QLNNTG 213 (411)
Q Consensus 148 ~~~l~~L~Prs~yl~lt~~~LN~~~l~P~kD~~~~~L-------~aG~LQLa~gT~lvIDEt~-L~eG------~L~~~G 213 (411)
.+.+...+... ++.+....+....+. .+..... ..|.+..+++++++|||.+ |... ..+..+
T Consensus 89 a~~la~~l~~~-~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~ 164 (376)
T 1um8_A 89 AQTLAKHLDIP-IAISDATSLTEAGYV---GEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSG 164 (376)
T ss_dssp HHHHHHHTTCC-EEEEEGGGCC-----------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------C
T ss_pred HHHHHHHhCCC-EEEecchhhhhcCcC---CccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccch
Confidence 99888877432 222222222111100 0000111 1244556789999999997 4321 122223
Q ss_pred chHHHHHHHHHHcCccc
Q psy899 214 CLNVKALSSVVNNQRMS 230 (411)
Q Consensus 214 v~N~~AL~~li~~Q~v~ 230 (411)
..-..+|..+|+...+.
T Consensus 165 ~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 165 EGVQQALLKIVEGSLVN 181 (376)
T ss_dssp HHHHHHHHHHHHCCEEC
T ss_pred HHHHHHHHHHhhcccee
Confidence 33678999999977654
No 21
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.89 E-value=0.4 Score=43.65 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHHHhhhccccCCcccchhhHHHHHHhhcCCCCCCHHHHHHHHHH
Q psy899 328 KTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALAM 382 (411)
Q Consensus 328 ~it~~dLh~ll~LAR~~~~~~~~~~~~~~~~~rLlalS~G~~~lt~e~W~~a~~L 382 (411)
..+.+++..++.-|. +.|+..|...++.+++..|.+-
T Consensus 212 g~~~~~l~~l~~~a~------------------~~a~~~~~~~i~~~d~~~a~~~ 248 (262)
T 2qz4_A 212 GFSGADIANICNEAA------------------LHAAREGHTSVHTLNFEYAVER 248 (262)
T ss_dssp TCCHHHHHHHHHHHH------------------TC--------CCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHH------------------HHHHHcCCCCCCHHHHHHHHHH
Confidence 467899999998888 7888889999999999887653
No 22
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.76 E-value=1.3 Score=41.60 Aligned_cols=80 Identities=16% Similarity=0.128 Sum_probs=49.2
Q ss_pred eEEEEeecCCCCccchhHHHHHHHHHHhccc-eEEeeccccccccCCcceeecCCCCcccccce--eeeCCcEEEEecCC
Q psy899 127 FSLNIFHRDLATSCSDYAQMLYDILKLLVCK-SHYFELNVKSLNETTMIPRKDYNTNRLKSGLL--QLSSSTYLILDEIH 203 (411)
Q Consensus 127 ~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Pr-s~yl~lt~~~LN~~~l~P~kD~~~~~L~aG~L--QLa~gT~lvIDEt~ 203 (411)
-++.|+| -||++ |+.|.+.+..-... ..++.. ..+.... .+ .|.+ .+++++.++|||.+
T Consensus 39 ~~vll~G--~~GtG---KT~la~~i~~~~~~~~~~~~~-------~~~~~~~-----~l-~~~l~~~~~~~~~l~lDEi~ 100 (324)
T 1hqc_A 39 EHLLLFG--PPGLG---KTTLAHVIAHELGVNLRVTSG-------PAIEKPG-----DL-AAILANSLEEGDILFIDEIH 100 (324)
T ss_dssp CCCEEEC--CTTCC---CHHHHHHHHHHHTCCEEEECT-------TTCCSHH-----HH-HHHHTTTCCTTCEEEETTTT
T ss_pred CcEEEEC--CCCCC---HHHHHHHHHHHhCCCEEEEec-------cccCChH-----HH-HHHHHHhccCCCEEEEECCc
Confidence 4689999 99999 88888877665432 222221 1111111 11 1112 25789999999996
Q ss_pred CCCCccccccchHHHHHHHHHHcCccce
Q psy899 204 LQPGQLNNTGCLNVKALSSVVNNQRMSY 231 (411)
Q Consensus 204 L~eG~L~~~Gv~N~~AL~~li~~Q~v~Y 231 (411)
.+.......|..+++...+..
T Consensus 101 -------~l~~~~~~~L~~~l~~~~~~~ 121 (324)
T 1hqc_A 101 -------RLSRQAEEHLYPAMEDFVMDI 121 (324)
T ss_dssp -------SCCHHHHHHHHHHHHHSEEEE
T ss_pred -------ccccchHHHHHHHHHhhhhHH
Confidence 344456778889998876543
No 23
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=92.99 E-value=1.1 Score=41.06 Aligned_cols=37 Identities=16% Similarity=0.105 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHHHhhhccccCCcccchhhHHHHHHhhcCCCCCCHHHHHHHHH
Q psy899 327 KKTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALA 381 (411)
Q Consensus 327 ~~it~~dLh~ll~LAR~~~~~~~~~~~~~~~~~rLlalS~G~~~lt~e~W~~a~~ 381 (411)
+..+.++|..++.-|- +.|...|...++.++++.|.+
T Consensus 214 ~G~~~~dl~~l~~~a~------------------~~a~~~~~~~i~~~~~~~a~~ 250 (257)
T 1lv7_A 214 PGFSGADLANLVNEAA------------------LFAARGNKRVVSMVEFEKAKD 250 (257)
T ss_dssp TTCCHHHHHHHHHHHH------------------HHHHHTTCSSBCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH------------------HHHHHhCCCcccHHHHHHHHH
Confidence 3468999999999888 899999999999999998875
No 24
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=92.72 E-value=0.046 Score=46.51 Aligned_cols=76 Identities=9% Similarity=-0.025 Sum_probs=52.4
Q ss_pred ceEEEEeecCCCCccchhHHHHHHHHHHhccceEEeeccccccccCCcceeecCCCCcccccceeeeCCcEEEEecCCCC
Q psy899 126 KFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQLSSSTYLILDEIHLQ 205 (411)
Q Consensus 126 ~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt~~~LN~~~l~P~kD~~~~~L~aG~LQLa~gT~lvIDEt~L~ 205 (411)
..++.|.| -||++ |+.+.+.+....+ .++.+....+.. .+..|.+..++++.++|||.+
T Consensus 27 ~~~vll~G--~~GtG---Kt~lA~~i~~~~~--~~~~~~~~~~~~------------~~~~~~~~~a~~~~l~lDei~-- 85 (143)
T 3co5_A 27 TSPVFLTG--EAGSP---FETVARYFHKNGT--PWVSPARVEYLI------------DMPMELLQKAEGGVLYVGDIA-- 85 (143)
T ss_dssp SSCEEEEE--ETTCC---HHHHHGGGCCTTS--CEECCSSTTHHH------------HCHHHHHHHTTTSEEEEEECT--
T ss_pred CCcEEEEC--CCCcc---HHHHHHHHHHhCC--CeEEechhhCCh------------HhhhhHHHhCCCCeEEEeChH--
Confidence 35689999 99999 9999888877766 222222222211 125788889999999999996
Q ss_pred CCccccccchHHHHHHHHHHcC
Q psy899 206 PGQLNNTGCLNVKALSSVVNNQ 227 (411)
Q Consensus 206 eG~L~~~Gv~N~~AL~~li~~Q 227 (411)
.....-..+|..+|+..
T Consensus 86 -----~l~~~~q~~Ll~~l~~~ 102 (143)
T 3co5_A 86 -----QYSRNIQTGITFIIGKA 102 (143)
T ss_dssp -----TCCHHHHHHHHHHHHHH
T ss_pred -----HCCHHHHHHHHHHHHhC
Confidence 33334556677777764
No 25
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=92.33 E-value=0.25 Score=50.50 Aligned_cols=182 Identities=11% Similarity=0.113 Sum_probs=93.8
Q ss_pred eEEEEeecCCCCccchhHHHHHHHHHHhccceEEeeccccccccCCcceeecCCCCccc--ccceeeeCCcEEEEecCC-
Q psy899 127 FSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDYNTNRLK--SGLLQLSSSTYLILDEIH- 203 (411)
Q Consensus 127 ~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt~~~LN~~~l~P~kD~~~~~L~--aG~LQLa~gT~lvIDEt~- 203 (411)
-++.|.| -||++ |+.|.+.+...+... +..++..+. ..++- ...++ ......+.+++++|||.+
T Consensus 51 ~~vLL~G--ppGtG---KTtlAr~ia~~~~~~-f~~l~a~~~------~~~~i-r~~~~~a~~~~~~~~~~iLfIDEI~~ 117 (447)
T 3pvs_A 51 HSMILWG--PPGTG---KTTLAEVIARYANAD-VERISAVTS------GVKEI-REAIERARQNRNAGRRTILFVDEVHR 117 (447)
T ss_dssp CEEEEEC--STTSS---HHHHHHHHHHHTTCE-EEEEETTTC------CHHHH-HHHHHHHHHHHHTTCCEEEEEETTTC
T ss_pred cEEEEEC--CCCCc---HHHHHHHHHHHhCCC-eEEEEeccC------CHHHH-HHHHHHHHHhhhcCCCcEEEEeChhh
Confidence 3789999 99999 999999998877543 233322111 11110 00000 001123578999999997
Q ss_pred CCCCccccccchHHHHHHHHHHcCccceeecCCccccccCCCeeEeecCCCCCCcceEEEecCCCCCchhHHHHHHHhhh
Q psy899 204 LQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSDTKSMLPSDCHIKLKPDPSCSSVIRETFSAAHQ 283 (411)
Q Consensus 204 L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~gKS~lp~Dl~vpl~~~~~~~~~~~e~i~~~~~ 283 (411)
|.. ....+|...++..++.+.+-.. -.....++..++|+ +. .+.+.+-+ .
T Consensus 118 l~~--------~~q~~LL~~le~~~v~lI~att-~n~~~~l~~aL~sR------~~-v~~l~~l~--~------------ 167 (447)
T 3pvs_A 118 FNK--------SQQDAFLPHIEDGTITFIGATT-ENPSFELNSALLSR------AR-VYLLKSLS--T------------ 167 (447)
T ss_dssp C--------------CCHHHHHTTSCEEEEEES-SCGGGSSCHHHHTT------EE-EEECCCCC--H------------
T ss_pred hCH--------HHHHHHHHHHhcCceEEEecCC-CCcccccCHHHhCc------ee-EEeeCCcC--H------------
Confidence 332 3445677888877766543110 01112344556666 44 34444332 1
Q ss_pred cCChhhHHHHHHHHHHh-hc---cCCCCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhccccCCcccchhhHH
Q psy899 284 YLKPELLNKIRTYISWI-QN---RGFDIPENLTEIVQKDFVEMRKENKKTDANDLHTLIVLARLEHLRLRPATHYQVDLI 359 (411)
Q Consensus 284 ~~~~~~l~~lR~YLa~a-R~---~~~~i~ee~~~~IqddFV~~R~~~~~it~~dLh~ll~LAR~~~~~~~~~~~~~~~~~ 359 (411)
++....++.++... +. ....+++++.+.|.+.+ + =+.+++..++..+-
T Consensus 168 ---edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~------~--Gd~R~lln~Le~a~----------------- 219 (447)
T 3pvs_A 168 ---EDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELV------N--GDARRALNTLEMMA----------------- 219 (447)
T ss_dssp ---HHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHH------C--SCHHHHHHHHHHHH-----------------
T ss_pred ---HHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHC------C--CCHHHHHHHHHHHH-----------------
Confidence 11233444444432 11 34668888888876652 1 24566666655443
Q ss_pred HHHHhhc--CCCCCCHHHHHHHH
Q psy899 360 RLMSLSH--GHSELTEDMWKVAL 380 (411)
Q Consensus 360 rLlalS~--G~~~lt~e~W~~a~ 380 (411)
.++... |...+|.++.+.++
T Consensus 220 -~~a~~~~~~~~~It~e~v~~~l 241 (447)
T 3pvs_A 220 -DMAEVDDSGKRVLKPELLTEIA 241 (447)
T ss_dssp -HHSCBCTTSCEECCHHHHHHHH
T ss_pred -HhcccccCCCCccCHHHHHHHH
Confidence 333222 44567777766554
No 26
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=91.93 E-value=5 Score=35.23 Aligned_cols=52 Identities=23% Similarity=0.348 Sum_probs=35.2
Q ss_pred cCCCCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhccccCCcccchhhHHHHHHhhcCCCCCCHHHHHHHHH
Q psy899 303 RGFDIPENLTEIVQKDFVEMRKENKKTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALA 381 (411)
Q Consensus 303 ~~~~i~ee~~~~IqddFV~~R~~~~~it~~dLh~ll~LAR~~~~~~~~~~~~~~~~~rLlalS~G~~~lt~e~W~~a~~ 381 (411)
....+++++.++|.+.+ . =+.+++..++.-+. ..|...|. .+|.++.+.+.+
T Consensus 190 ~~~~~~~~~~~~l~~~~------~--g~~r~l~~~l~~~~------------------~~a~~~~~-~It~~~v~~~l~ 241 (242)
T 3bos_A 190 RGLQLPEDVGRFLLNRM------A--RDLRTLFDVLDRLD------------------KASMVHQR-KLTIPFVKEMLR 241 (242)
T ss_dssp TTCCCCHHHHHHHHHHT------T--TCHHHHHHHHHHHH------------------HHHHHHTC-CCCHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHc------c--CCHHHHHHHHHHHH------------------HHHHHhCC-CCcHHHHHHHhh
Confidence 45678888887776532 1 25677777777555 55655564 699999888764
No 27
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=91.55 E-value=3.4 Score=42.41 Aligned_cols=66 Identities=15% Similarity=0.065 Sum_probs=46.9
Q ss_pred HHHHHHhhhcCcHHHHHHHHHHHhcceeeec---CC-ceeeeceEEEEeecCCCCccchhHHHHHHHHHHhccceE
Q psy899 88 LKLLLTQLLMGDDVAADYLICYLLSRVYCRD---EV-GFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSH 159 (411)
Q Consensus 88 Li~~La~~l~GD~laAEyLLL~L~S~V~~r~---d~-~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~ 159 (411)
+...|...+.|.+.|++.|...+... +.|. ++ ...+-.-++.|.| -||++ |+.+.+.+...++...
T Consensus 9 i~~~Ld~~IvGqe~ak~~l~~av~~~-~~r~~~~~~~~~~~~~~~iLl~G--ppGtG---KT~lar~lA~~l~~~~ 78 (444)
T 1g41_A 9 IVSELDQHIIGQADAKRAVAIALRNR-WRRMQLQEPLRHEVTPKNILMIG--PTGVG---KTEIARRLAKLANAPF 78 (444)
T ss_dssp HHHHHHTTCCSCHHHHHHHHHHHHHH-HHHHHSCTTTTTTCCCCCEEEEC--CTTSS---HHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHH-HhhhccccccccccCCceEEEEc--CCCCC---HHHHHHHHHHHcCCCc
Confidence 77788889999999999998887553 1221 11 0011234689999 99999 9999998888876543
No 28
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.25 E-value=0.29 Score=41.47 Aligned_cols=76 Identities=7% Similarity=0.037 Sum_probs=51.7
Q ss_pred eceEEEEeecCCCCccchhHHHHHHHHHHhccceE--EeeccccccccCCcceeecCCCCcccccceeeeCCcEEEEecC
Q psy899 125 GKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSH--YFELNVKSLNETTMIPRKDYNTNRLKSGLLQLSSSTYLILDEI 202 (411)
Q Consensus 125 G~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~--yl~lt~~~LN~~~l~P~kD~~~~~L~aG~LQLa~gT~lvIDEt 202 (411)
.+.++.|.| -||++ |+.+.+.+....++.. ++ +....+... .-..|.+..++|+.++|||.
T Consensus 23 ~~~~vll~G--~~GtG---Kt~lA~~i~~~~~~~~~~~v-~~~~~~~~~-----------~~~~~~~~~a~~g~l~ldei 85 (145)
T 3n70_A 23 TDIAVWLYG--APGTG---RMTGARYLHQFGRNAQGEFV-YRELTPDNA-----------PQLNDFIALAQGGTLVLSHP 85 (145)
T ss_dssp CCSCEEEES--STTSS---HHHHHHHHHHSSTTTTSCCE-EEECCTTTS-----------SCHHHHHHHHTTSCEEEECG
T ss_pred CCCCEEEEC--CCCCC---HHHHHHHHHHhCCccCCCEE-EECCCCCcc-----------hhhhcHHHHcCCcEEEEcCh
Confidence 345789999 99999 9999999988875532 11 221111111 23467788899999999999
Q ss_pred CCCCCccccccchHHHHHHHHH
Q psy899 203 HLQPGQLNNTGCLNVKALSSVV 224 (411)
Q Consensus 203 ~L~eG~L~~~Gv~N~~AL~~li 224 (411)
+ .....-...|..+|
T Consensus 86 ~-------~l~~~~q~~Ll~~l 100 (145)
T 3n70_A 86 E-------HLTREQQYHLVQLQ 100 (145)
T ss_dssp G-------GSCHHHHHHHHHHH
T ss_pred H-------HCCHHHHHHHHHHH
Confidence 6 34445556677777
No 29
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=90.63 E-value=2.3 Score=41.76 Aligned_cols=96 Identities=18% Similarity=0.276 Sum_probs=49.1
Q ss_pred hcCcHHHHHHHHHHHhcceeeecCC--ceeeeceEEEEeecCCCCccchhHHHHHHHHHHhccceEEeeccccccccCCc
Q psy899 96 LMGDDVAADYLICYLLSRVYCRDEV--GFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETTM 173 (411)
Q Consensus 96 l~GD~laAEyLLL~L~S~V~~r~d~--~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt~~~LN~~~l 173 (411)
+.|...+.+.|.-.+..... +++. ....-.-++.|.| -||++ |+.|.+.+..-... .++.++...+.+..
T Consensus 117 iiG~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~vLL~G--ppGtG---KT~la~aia~~~~~-~~~~v~~~~l~~~~- 188 (389)
T 3vfd_A 117 IAGQDLAKQALQEIVILPSL-RPELFTGLRAPARGLLLFG--PPGNG---KTMLAKAVAAESNA-TFFNISAASLTSKY- 188 (389)
T ss_dssp SCSCHHHHHHHHHHTHHHHH-CTTTSCGGGCCCSEEEEES--STTSC---HHHHHHHHHHHTTC-EEEEECSCCC-----
T ss_pred hCCHHHHHHHHHHHHHHhcc-CHHHhcccCCCCceEEEEC--CCCCC---HHHHHHHHHHhhcC-cEEEeeHHHhhccc-
Confidence 45666666665544432211 1110 0111235799999 99999 99998888776543 33334433332211
Q ss_pred ceeecCCCCcccccceeee---CCcEEEEecCC
Q psy899 174 IPRKDYNTNRLKSGLLQLS---SSTYLILDEIH 203 (411)
Q Consensus 174 ~P~kD~~~~~L~aG~LQLa---~gT~lvIDEt~ 203 (411)
-........+++..+ ..++++|||.+
T Consensus 189 ----~g~~~~~~~~~~~~a~~~~~~il~iDEid 217 (389)
T 3vfd_A 189 ----VGEGEKLVRALFAVARELQPSIIFIDQVD 217 (389)
T ss_dssp -------CHHHHHHHHHHHHHSSSEEEEEETGG
T ss_pred ----cchHHHHHHHHHHHHHhcCCeEEEEECch
Confidence 011112223333332 34799999997
No 30
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=90.40 E-value=2.1 Score=42.22 Aligned_cols=113 Identities=18% Similarity=0.190 Sum_probs=75.6
Q ss_pred eceEEEEeecCCCCccchhHHHHHHHHHHhccceE-EeeccccccccCCcc-----eee-cC-CCCcccccceeeeCCcE
Q psy899 125 GKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSH-YFELNVKSLNETTMI-----PRK-DY-NTNRLKSGLLQLSSSTY 196 (411)
Q Consensus 125 G~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~-yl~lt~~~LN~~~l~-----P~k-D~-~~~~L~aG~LQLa~gT~ 196 (411)
.+.++.+.| -++++ +..+.+++....++.. ++.+.-+.++...+. -.+ .+ +..+-..|.+..|+||.
T Consensus 151 ~~~~vli~G--esGtG---Ke~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a~~gt 225 (368)
T 3dzd_A 151 SKAPVLITG--ESGTG---KEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTRKKGKLELADQGT 225 (368)
T ss_dssp SCSCEEEEC--CTTSS---HHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCCEECHHHHTTTSE
T ss_pred cchhheEEe--CCCch---HHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccccCChHhhcCCCe
Confidence 345688999 89999 9999999998887753 455444443322111 011 11 11233679999999999
Q ss_pred EEEecCCCCCCccccccchHHHHHHHHHHcCccceeecCCccccccCCCeeEeec
Q psy899 197 LILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSD 251 (411)
Q Consensus 197 lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~ 251 (411)
+.+||.+ ++...-...|-.+++.+++.-- ...-..++|+.++.-|.
T Consensus 226 lfldei~-------~l~~~~Q~~Ll~~l~~~~~~~~--g~~~~~~~~~rii~at~ 271 (368)
T 3dzd_A 226 LFLDEVG-------ELDQRVQAKLLRVLETGSFTRL--GGNQKIEVDIRVISATN 271 (368)
T ss_dssp EEEETGG-------GSCHHHHHHHHHHHHHSEECCB--TCCCBEECCCEEEEEES
T ss_pred EEecChh-------hCCHHHHHHHHHHHHhCCcccC--CCCcceeeeeEEEEecC
Confidence 9999995 5666778888999998865422 12345677777777666
No 31
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.36 E-value=9.8 Score=38.82 Aligned_cols=187 Identities=15% Similarity=0.206 Sum_probs=101.3
Q ss_pred EEEEeecCCCCccchhHHHHHHHHHHhccceEEeeccccccccCCcceeecCCCCcccccceeee---CCcEEEEecCC-
Q psy899 128 SLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQLS---SSTYLILDEIH- 203 (411)
Q Consensus 128 sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt~~~LN~~~l~P~kD~~~~~L~aG~LQLa---~gT~lvIDEt~- 203 (411)
.+.|.| -||++ |+.|.+.++.-+-. .++.++...+-+.. -+++.++..-+...| ...++.|||.+
T Consensus 217 GvLLyG--PPGTG---KTllAkAiA~e~~~-~f~~v~~s~l~~~~-----vGese~~ir~lF~~A~~~aP~IifiDEiDa 285 (434)
T 4b4t_M 217 GALMYG--PPGTG---KTLLARACAAQTNA-TFLKLAAPQLVQMY-----IGEGAKLVRDAFALAKEKAPTIIFIDELDA 285 (434)
T ss_dssp EEEEES--CTTSS---HHHHHHHHHHHHTC-EEEEEEGGGGCSSC-----SSHHHHHHHHHHHHHHHHCSEEEEEECTHH
T ss_pred eeEEEC--cCCCC---HHHHHHHHHHHhCC-CEEEEehhhhhhcc-----cchHHHHHHHHHHHHHhcCCeEEeecchhh
Confidence 368999 99999 99999988876644 34455555543322 111222222333322 24789999998
Q ss_pred CCCC--ccccccchHH-HHHHHHHHcCccceeecCCccccccCCCeeEe-ecCC------CCCC---cceEEEecCCCCC
Q psy899 204 LQPG--QLNNTGCLNV-KALSSVVNNQRMSYDFQFYDGTFPTDIPVLSL-SDTK------SMLP---SDCHIKLKPDPSC 270 (411)
Q Consensus 204 L~eG--~L~~~Gv~N~-~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliL-S~gK------S~lp---~Dl~vpl~~~~~~ 270 (411)
+-.. .-+..|.... ..+..++++- | .+ ..+-+|+|+ +..+ .++. ||..|.+... +.
T Consensus 286 l~~~R~~~~~~~~~~~~~~~~~lL~~l----d-g~-----~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lP-d~ 354 (434)
T 4b4t_M 286 IGTKRFDSEKSGDREVQRTMLELLNQL----D-GF-----SSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLP-SE 354 (434)
T ss_dssp HHCCCSSGGGGTTHHHHHHHHHHHHHH----T-TS-----CSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCC-CH
T ss_pred hhhccCCCCCCCchHHHHHHHHHHHHh----h-cc-----CCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCc-CH
Confidence 3211 1112222222 2333343321 1 11 112234443 3322 2332 7887776532 21
Q ss_pred chhHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhccccCC
Q psy899 271 SSVIRETFSAAHQYLKPELLNKIRTYISWIQNRGFDIPENLTEIVQKDFVEMRKENKKTDANDLHTLIVLARLEHLRLRP 350 (411)
Q Consensus 271 ~~~~~e~i~~~~~~~~~~~l~~lR~YLa~aR~~~~~i~ee~~~~IqddFV~~R~~~~~it~~dLh~ll~LAR~~~~~~~~ 350 (411)
+...+.|+.|+.... ....++ .. . +..+ ....|..|+..+.+-|-
T Consensus 355 ----------------~~R~~Il~~~~~~~~-~~~dvd--l~-~-----lA~~--t~G~sGADi~~l~~eA~-------- 399 (434)
T 4b4t_M 355 ----------------DSRAQILQIHSRKMT-TDDDIN--WQ-E-----LARS--TDEFNGAQLKAVTVEAG-------- 399 (434)
T ss_dssp ----------------HHHHHHHHHHHHHSC-BCSCCC--HH-H-----HHHH--CSSCCHHHHHHHHHHHH--------
T ss_pred ----------------HHHHHHHHHHhcCCC-CCCcCC--HH-H-----HHHh--CCCCCHHHHHHHHHHHH--------
Confidence 124556676654432 222222 11 1 1112 22478999999999888
Q ss_pred cccchhhHHHHHHhhcCCCCCCHHHHHHHHH
Q psy899 351 ATHYQVDLIRLMSLSHGHSELTEDMWKVALA 381 (411)
Q Consensus 351 ~~~~~~~~~rLlalS~G~~~lt~e~W~~a~~ 381 (411)
+.|+..|+..++.+++..|.+
T Consensus 400 ----------~~a~r~~~~~i~~~Df~~Al~ 420 (434)
T 4b4t_M 400 ----------MIALRNGQSSVKHEDFVEGIS 420 (434)
T ss_dssp ----------HHHHHHTCSSBCHHHHHHHHH
T ss_pred ----------HHHHHcCCCCcCHHHHHHHHH
Confidence 899999999999999988764
No 32
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=89.88 E-value=1.9 Score=47.23 Aligned_cols=126 Identities=12% Similarity=0.122 Sum_probs=70.1
Q ss_pred HHHhhhcCcHHHHHHHHHHHhcceeeecCCceeeeceEEEEeecCCCCccchhHHHHHHHHHHhccce--EEeecccccc
Q psy899 91 LLTQLLMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKS--HYFELNVKSL 168 (411)
Q Consensus 91 ~La~~l~GD~laAEyLLL~L~S~V~~r~d~~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs--~yl~lt~~~L 168 (411)
.+...+.|...+.+.+.-.+-.....-.+...+. -++.|.| -||++ |+.+.+.+...+++. .++.+....+
T Consensus 555 ~l~~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~--~~vLl~G--p~GtG---KT~lA~~la~~~~~~~~~~i~i~~~~~ 627 (854)
T 1qvr_A 555 ELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPI--GSFLFLG--PTGVG---KTELAKTLAATLFDTEEAMIRIDMTEY 627 (854)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCS--EEEEEBS--CSSSS---HHHHHHHHHHHHHSSGGGEEEECTTTC
T ss_pred HHhcccCCcHHHHHHHHHHHHHHhcccCCCCCCc--eEEEEEC--CCCCC---HHHHHHHHHHHhcCCCCcEEEEechhc
Confidence 4444567877776666554432211001111222 3789999 99999 999999998877542 2222221111
Q ss_pred ccC----Ccc-eeecC---CCCcccccceeeeCCcEEEEecCCCCCCccccccchHHHHHHHHHHcCccc
Q psy899 169 NET----TMI-PRKDY---NTNRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMS 230 (411)
Q Consensus 169 N~~----~l~-P~kD~---~~~~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~ 230 (411)
... .+. ....| +..+.-.+++.-.++++++|||.+ ++...-...|..+|+...+.
T Consensus 628 ~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~-------~l~~~~~~~Ll~~l~~~~~~ 690 (854)
T 1qvr_A 628 MEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIE-------KAHPDVFNILLQILDDGRLT 690 (854)
T ss_dssp CSSGGGGGC--------------CHHHHHHHCSSEEEEESSGG-------GSCHHHHHHHHHHHTTTEEC
T ss_pred cchhHHHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEeccc-------ccCHHHHHHHHHHhccCceE
Confidence 111 010 00111 111223345555678999999995 55667788899999988765
No 33
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=88.57 E-value=0.58 Score=46.55 Aligned_cols=113 Identities=17% Similarity=0.195 Sum_probs=75.8
Q ss_pred eceEEEEeecCCCCccchhHHHHHHHHHHhccce--EEeeccccccccCC-----cceee-cC-CCCcccccceeeeCCc
Q psy899 125 GKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKS--HYFELNVKSLNETT-----MIPRK-DY-NTNRLKSGLLQLSSST 195 (411)
Q Consensus 125 G~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs--~yl~lt~~~LN~~~-----l~P~k-D~-~~~~L~aG~LQLa~gT 195 (411)
.++++.|.| -+|++ ++.+.+.+..+.++. .++.+.-..++... |--.+ .+ +...-..|.+..|+||
T Consensus 159 ~~~~vli~G--e~GtG---K~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~~~g~~~~a~~g 233 (387)
T 1ny5_A 159 AECPVLITG--ESGVG---KEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGG 233 (387)
T ss_dssp CCSCEEEEC--STTSS---HHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSCBCCHHHHTTTS
T ss_pred CCCCeEEec--CCCcC---HHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccccCCceeeCCCc
Confidence 367789999 99999 999999999998864 34443322221110 00001 11 1123368999999999
Q ss_pred EEEEecCCCCCCccccccchHHHHHHHHHHcCccceeecCCccccccCCCeeEeec
Q psy899 196 YLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSD 251 (411)
Q Consensus 196 ~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~ 251 (411)
.+.+||.+ ++...-...|-.+++.+++... ...-..++|+.++.-|.
T Consensus 234 tlfldei~-------~l~~~~q~~Ll~~l~~~~~~~~--g~~~~~~~~~rii~at~ 280 (387)
T 1ny5_A 234 TLFLDEIG-------ELSLEAQAKLLRVIESGKFYRL--GGRKEIEVNVRILAATN 280 (387)
T ss_dssp EEEEESGG-------GCCHHHHHHHHHHHHHSEECCB--TCCSBEECCCEEEEEES
T ss_pred EEEEcChh-------hCCHHHHHHHHHHHhcCcEEeC--CCCceeeccEEEEEeCC
Confidence 99999995 5666788889999999876532 23456677887776665
No 34
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=87.70 E-value=2.9 Score=43.11 Aligned_cols=88 Identities=8% Similarity=0.129 Sum_probs=49.5
Q ss_pred eEEEEeecCCCCccchhHHHHHHHHHHhccceEEeeccccccccCCcceeecCCCCcccccceeeeCC---cEEEEecCC
Q psy899 127 FSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQLSSS---TYLILDEIH 203 (411)
Q Consensus 127 ~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt~~~LN~~~l~P~kD~~~~~L~aG~LQLa~g---T~lvIDEt~ 203 (411)
-++.|.| -||++ |+.+.+.+..-.. ..++.++...+.+..+ .....-..|++..+.+ +.++|||.+
T Consensus 239 ~~vLL~G--ppGtG---KT~lAraia~~~~-~~fv~vn~~~l~~~~~-----g~~~~~~~~~f~~A~~~~p~iLfLDEId 307 (489)
T 3hu3_A 239 RGILLYG--PPGTG---KTLIARAVANETG-AFFFLINGPEIMSKLA-----GESESNLRKAFEEAEKNAPAIIFIDELD 307 (489)
T ss_dssp CEEEEEC--STTSS---HHHHHHHHHHHCS-SEEEEEEHHHHHTSCT-----THHHHHHHHHHHHHHHTCSEEEEEESHH
T ss_pred CcEEEEC--cCCCC---HHHHHHHHHHHhC-CCEEEEEchHhhhhhc-----chhHHHHHHHHHHHHhcCCcEEEecchh
Confidence 3589999 99999 9999998877763 3344444333332211 1111223455555544 489999996
Q ss_pred -CCCCc---cccccchHHHHHHHHHH
Q psy899 204 -LQPGQ---LNNTGCLNVKALSSVVN 225 (411)
Q Consensus 204 -L~eG~---L~~~Gv~N~~AL~~li~ 225 (411)
|.... -.++..+-...|-.+|+
T Consensus 308 ~l~~~~~~~~~~~~~~~~~~LL~~ld 333 (489)
T 3hu3_A 308 AIAPKREKTHGEVERRIVSQLLTLMD 333 (489)
T ss_dssp HHCBCTTSCCCHHHHHHHHHHHHHHH
T ss_pred hhccccccccchHHHHHHHHHHHHhh
Confidence 33211 11222344455666666
No 35
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=86.38 E-value=9.2 Score=37.20 Aligned_cols=66 Identities=11% Similarity=0.230 Sum_probs=39.9
Q ss_pred eEEEEeecCCCCccchhHHHHHHHHHHhccceEEeeccccccccCCcceeecCCCCcccccceeee---CCcEEEEecCC
Q psy899 127 FSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQLS---SSTYLILDEIH 203 (411)
Q Consensus 127 ~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt~~~LN~~~l~P~kD~~~~~L~aG~LQLa---~gT~lvIDEt~ 203 (411)
-++.|.| -||++ |+.|.+.+..-+.. .++.++...+.+..+ .........++..+ ..++++|||.+
T Consensus 85 ~~iLL~G--ppGtG---KT~la~ala~~~~~-~~~~v~~~~l~~~~~-----g~~~~~~~~~f~~a~~~~~~vl~iDEid 153 (355)
T 2qp9_X 85 SGILLYG--PPGTG---KSYLAKAVATEANS-TFFSVSSSDLVSKWM-----GESEKLVKQLFAMARENKPSIIFIDQVD 153 (355)
T ss_dssp CCEEEEC--STTSC---HHHHHHHHHHHHTC-EEEEEEHHHHHSCC--------CHHHHHHHHHHHHHTSSEEEEEECGG
T ss_pred ceEEEEC--CCCCc---HHHHHHHHHHHhCC-CEEEeeHHHHhhhhc-----chHHHHHHHHHHHHHHcCCeEEEEechH
Confidence 3689999 99999 88888888776643 333444333322210 11222333444444 57899999998
No 36
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=85.94 E-value=4.4 Score=37.62 Aligned_cols=66 Identities=14% Similarity=0.210 Sum_probs=37.5
Q ss_pred eEEEEeecCCCCccchhHHHHHHHHHHhccceEEeeccccccccCCcceeecCCCCccccccee---eeCCcEEEEecCC
Q psy899 127 FSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQ---LSSSTYLILDEIH 203 (411)
Q Consensus 127 ~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt~~~LN~~~l~P~kD~~~~~L~aG~LQ---La~gT~lvIDEt~ 203 (411)
-++.|.| -||++ |+.+.+.+..-+.. .++.++...+.... ...........+. ..+.++++|||.+
T Consensus 55 ~~vll~G--p~GtG---KT~la~~la~~~~~-~~~~i~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~vl~iDEid 123 (297)
T 3b9p_A 55 KGLLLFG--PPGNG---KTLLARAVATECSA-TFLNISAASLTSKY-----VGDGEKLVRALFAVARHMQPSIIFIDEVD 123 (297)
T ss_dssp SEEEEES--SSSSC---HHHHHHHHHHHTTC-EEEEEESTTTSSSS-----CSCHHHHHHHHHHHHHHTCSEEEEEETGG
T ss_pred CeEEEEC--cCCCC---HHHHHHHHHHHhCC-CeEEeeHHHHhhcc-----cchHHHHHHHHHHHHHHcCCcEEEeccHH
Confidence 4789999 99999 99999888776643 23333332222111 0111111111122 2356899999997
No 37
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=85.91 E-value=5.3 Score=37.89 Aligned_cols=55 Identities=13% Similarity=0.048 Sum_probs=35.4
Q ss_pred CCCCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhccccCCcccchhhHHHHHHhhcCCCCCCHHHHHHHHH
Q psy899 304 GFDIPENLTEIVQKDFVEMRKENKKTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALA 381 (411)
Q Consensus 304 ~~~i~ee~~~~IqddFV~~R~~~~~it~~dLh~ll~LAR~~~~~~~~~~~~~~~~~rLlalS~G~~~lt~e~W~~a~~ 381 (411)
...+++++.+.|.+..- + .+=+.+.+..++..|- .+|...|...++.+++..+..
T Consensus 220 ~~~~~~~~~~~l~~~~~--~---~~G~~r~~~~~l~~a~------------------~~a~~~~~~~i~~~~v~~a~~ 274 (387)
T 2v1u_A 220 PGVLDPDVVPLCAALAA--R---EHGDARRALDLLRVAG------------------EIAERRREERVRREHVYSARA 274 (387)
T ss_dssp TTTBCSSHHHHHHHHHH--S---SSCCHHHHHHHHHHHH------------------HHHHHTTCSCBCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH--H---hccCHHHHHHHHHHHH------------------HHHHHcCCCCcCHHHHHHHHH
Confidence 45677777776654331 1 1124666666666555 566667888899999888764
No 38
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=84.31 E-value=2.6 Score=42.55 Aligned_cols=52 Identities=15% Similarity=0.223 Sum_probs=38.5
Q ss_pred cCCCCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhccccCCcccchhhHHHHHHhhcCCCCCCHHHHHHHHH
Q psy899 303 RGFDIPENLTEIVQKDFVEMRKENKKTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALA 381 (411)
Q Consensus 303 ~~~~i~ee~~~~IqddFV~~R~~~~~it~~dLh~ll~LAR~~~~~~~~~~~~~~~~~rLlalS~G~~~lt~e~W~~a~~ 381 (411)
....+++++.++|.+.+ . =+.+++..++..+. ..|...|. .+|.+.++.+..
T Consensus 279 ~~~~i~~e~l~~la~~~------~--gn~R~l~~~L~~~~------------------~~a~~~~~-~It~~~~~~~l~ 330 (440)
T 2z4s_A 279 EHGELPEEVLNFVAENV------D--DNLRRLRGAIIKLL------------------VYKETTGK-EVDLKEAILLLK 330 (440)
T ss_dssp HTCCCCTTHHHHHHHHC------C--SCHHHHHHHHHHHH------------------HHHHHSSS-CCCHHHHHHHTS
T ss_pred cCCCCCHHHHHHHHHhc------C--CCHHHHHHHHHHHH------------------HHHHHhCC-CCCHHHHHHHHH
Confidence 45778999988776422 2 37899998888777 66666776 699999988764
No 39
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=84.29 E-value=5 Score=39.03 Aligned_cols=97 Identities=11% Similarity=0.157 Sum_probs=50.4
Q ss_pred hhcCcHHHHHHHHHHHhcceeeecCCc--eeeeceEEEEeecCCCCccchhHHHHHHHHHHhccceEEeeccccccccCC
Q psy899 95 LLMGDDVAADYLICYLLSRVYCRDEVG--FALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETT 172 (411)
Q Consensus 95 ~l~GD~laAEyLLL~L~S~V~~r~d~~--~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt~~~LN~~~ 172 (411)
-+.|...+.+.|.-.+..- ..+++.- .....-++.|.| -||++ |+.|.+.+..-+.. .++.++...+....
T Consensus 85 ~i~G~~~~~~~l~~~i~~~-~~~~~~~~~~~~~~~~vLl~G--ppGtG---KT~la~aia~~~~~-~~~~i~~~~l~~~~ 157 (357)
T 3d8b_A 85 DIAGVEFAKATIKEIVVWP-MLRPDIFTGLRGPPKGILLFG--PPGTG---KTLIGKCIASQSGA-TFFSISASSLTSKW 157 (357)
T ss_dssp GSCSCHHHHHHHHHHTHHH-HHCTTTSCGGGSCCSEEEEES--STTSS---HHHHHHHHHHHTTC-EEEEEEGGGGCCSS
T ss_pred HhCChHHHHHHHHHHHHHH-hhChHhHhhccCCCceEEEEC--CCCCC---HHHHHHHHHHHcCC-eEEEEehHHhhccc
Confidence 3567777776655433211 1111110 011234689999 99999 99998888776643 23333333332211
Q ss_pred cceeecCCCCcccccceee---eCCcEEEEecCC
Q psy899 173 MIPRKDYNTNRLKSGLLQL---SSSTYLILDEIH 203 (411)
Q Consensus 173 l~P~kD~~~~~L~aG~LQL---a~gT~lvIDEt~ 203 (411)
. ........+.+.. ...++++|||.+
T Consensus 158 ~-----g~~~~~~~~~~~~a~~~~~~vl~iDEid 186 (357)
T 3d8b_A 158 V-----GEGEKMVRALFAVARCQQPAVIFIDEID 186 (357)
T ss_dssp T-----THHHHHHHHHHHHHHHTCSEEEEEETHH
T ss_pred c-----chHHHHHHHHHHHHHhcCCeEEEEeCch
Confidence 0 0011112222222 346899999997
No 40
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.86 E-value=15 Score=37.23 Aligned_cols=189 Identities=14% Similarity=0.186 Sum_probs=101.3
Q ss_pred EEEeecCCCCccchhHHHHHHHHHHhccceEEeeccccccccCCcceeecCCCCcccccceeee---CCcEEEEecCC-C
Q psy899 129 LNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQLS---SSTYLILDEIH-L 204 (411)
Q Consensus 129 LnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt~~~LN~~~l~P~kD~~~~~L~aG~LQLa---~gT~lvIDEt~-L 204 (411)
+.|.| -||++ |+.|.+.++.-+-.. ++.++...+-+.. -+++.+...-++..| .-.++.|||.+ +
T Consensus 185 vLL~G--PPGTG---KTllAkAiA~e~~~~-f~~v~~s~l~sk~-----vGese~~vr~lF~~Ar~~aP~IIFiDEiDai 253 (405)
T 4b4t_J 185 VILYG--PPGTG---KTLLARAVAHHTDCK-FIRVSGAELVQKY-----IGEGSRMVRELFVMAREHAPSIIFMDEIDSI 253 (405)
T ss_dssp EEEES--CSSSS---HHHHHHHHHHHHTCE-EEEEEGGGGSCSS-----TTHHHHHHHHHHHHHHHTCSEEEEEESSSCC
T ss_pred eEEeC--CCCCC---HHHHHHHHHHhhCCC-ceEEEhHHhhccc-----cchHHHHHHHHHHHHHHhCCceEeeecchhh
Confidence 68999 99999 999999887765443 4455554443322 112222223333333 24689999999 4
Q ss_pred CCCcccc--ccc-hHHHHHHHHHHcCccceeecCCccccccCCCeeEe-ecC-CC-----CC---CcceEEEecCCCCCc
Q psy899 205 QPGQLNN--TGC-LNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSL-SDT-KS-----ML---PSDCHIKLKPDPSCS 271 (411)
Q Consensus 205 ~eG~L~~--~Gv-~N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliL-S~g-KS-----~l---p~Dl~vpl~~~~~~~ 271 (411)
-...-+. -|. +....+..++.+- | .+ ..+-+|+|+ +.. .. ++ .||..|.+... +.
T Consensus 254 ~~~R~~~~~~~~~~~~~~l~~lL~~l----D-g~-----~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lP-d~- 321 (405)
T 4b4t_J 254 GSTRVEGSGGGDSEVQRTMLELLNQL----D-GF-----ETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPP-SV- 321 (405)
T ss_dssp TTSCSCSSSGGGGHHHHHHHHHHHHH----H-TT-----TCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCC-CH-
T ss_pred ccCCCCCCCCCcHHHHHHHHHHHHhh----h-cc-----CCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCc-CH-
Confidence 3211111 111 1222344444321 1 11 112233333 222 22 22 27777766532 11
Q ss_pred hhHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhccccCCc
Q psy899 272 SVIRETFSAAHQYLKPELLNKIRTYISWIQNRGFDIPENLTEIVQKDFVEMRKENKKTDANDLHTLIVLARLEHLRLRPA 351 (411)
Q Consensus 272 ~~~~e~i~~~~~~~~~~~l~~lR~YLa~aR~~~~~i~ee~~~~IqddFV~~R~~~~~it~~dLh~ll~LAR~~~~~~~~~ 351 (411)
+...+.||.|+.... ....++ ..+ | ..+ ....+..|+..+.+-|-
T Consensus 322 ---------------~~R~~Il~~~~~~~~-l~~dvd--l~~-l-----A~~--t~G~SGADi~~l~~eA~--------- 366 (405)
T 4b4t_J 322 ---------------AARAEILRIHSRKMN-LTRGIN--LRK-V-----AEK--MNGCSGADVKGVCTEAG--------- 366 (405)
T ss_dssp ---------------HHHHHHHHHHHTTSB-CCSSCC--HHH-H-----HHH--CCSCCHHHHHHHHHHHH---------
T ss_pred ---------------HHHHHHHHHHhcCCC-CCccCC--HHH-H-----HHH--CCCCCHHHHHHHHHHHH---------
Confidence 124556666543221 112221 111 1 111 23479999999999888
Q ss_pred ccchhhHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q psy899 352 THYQVDLIRLMSLSHGHSELTEDMWKVALAMEK 384 (411)
Q Consensus 352 ~~~~~~~~rLlalS~G~~~lt~e~W~~a~~LE~ 384 (411)
+.|+..++..+|.++|+.|.+=-.
T Consensus 367 ---------~~Air~~~~~vt~~Df~~Al~~v~ 390 (405)
T 4b4t_J 367 ---------MYALRERRIHVTQEDFELAVGKVM 390 (405)
T ss_dssp ---------HHHHHTTCSBCCHHHHHHHHHHHH
T ss_pred ---------HHHHHcCCCCcCHHHHHHHHHHHh
Confidence 899999999999999999876433
No 41
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=83.29 E-value=4.4 Score=36.85 Aligned_cols=35 Identities=23% Similarity=0.220 Sum_probs=29.6
Q ss_pred CCCHHHHHHHHHHHhhhccccCCcccchhhHHHHHHhhcCCCCCCHHHHHHHH
Q psy899 328 KTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVAL 380 (411)
Q Consensus 328 ~it~~dLh~ll~LAR~~~~~~~~~~~~~~~~~rLlalS~G~~~lt~e~W~~a~ 380 (411)
..+.+||..++.-|- +.|...|...+|.++.+.|.
T Consensus 219 G~~~~dl~~~~~~a~------------------~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 219 GFVGADLENLLNEAA------------------LLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp TCCHHHHHHHHHHHH------------------HHHHHTTCSSBCHHHHHHHT
T ss_pred CCCHHHHHHHHHHHH------------------HHHHHhcCCCcCHHHHHHHh
Confidence 457899999999887 78888898899999988764
No 42
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=83.18 E-value=22 Score=34.00 Aligned_cols=65 Identities=14% Similarity=0.141 Sum_probs=40.3
Q ss_pred HHHHHHHHh-hccCCCCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhccccCCcccchhhHHHHHHhhcCCCC
Q psy899 292 KIRTYISWI-QNRGFDIPENLTEIVQKDFVEMRKENKKTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSE 370 (411)
Q Consensus 292 ~lR~YLa~a-R~~~~~i~ee~~~~IqddFV~~R~~~~~it~~dLh~ll~LAR~~~~~~~~~~~~~~~~~rLlalS~G~~~ 370 (411)
.++.+|... +.....+++++.+.|-+ | .. =+++....++..++ ..|...|...
T Consensus 184 ~l~~iL~~~~~~~~~~~~~~~~~~ia~-----~-~~--G~~R~a~~ll~~~~------------------~~a~~~~~~~ 237 (334)
T 1in4_A 184 ELKEIIKRAASLMDVEIEDAAAEMIAK-----R-SR--GTPRIAIRLTKRVR------------------DMLTVVKADR 237 (334)
T ss_dssp HHHHHHHHHHHHTTCCBCHHHHHHHHH-----T-ST--TCHHHHHHHHHHHH------------------HHHHHHTCSS
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHH-----h-cC--CChHHHHHHHHHHH------------------HHHHHcCCCC
Confidence 344444332 23456788887766633 2 22 25677777777666 6777778778
Q ss_pred CCHHHHHHHHHH
Q psy899 371 LTEDMWKVALAM 382 (411)
Q Consensus 371 lt~e~W~~a~~L 382 (411)
+|.+.-+.|...
T Consensus 238 It~~~v~~al~~ 249 (334)
T 1in4_A 238 INTDIVLKTMEV 249 (334)
T ss_dssp BCHHHHHHHHHH
T ss_pred cCHHHHHHHHHH
Confidence 888877776654
No 43
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=82.25 E-value=5.7 Score=41.28 Aligned_cols=26 Identities=8% Similarity=-0.088 Sum_probs=22.3
Q ss_pred EEEEeecCCCCccchhHHHHHHHHHHhccce
Q psy899 128 SLNIFHRDLATSCSDYAQMLYDILKLLVCKS 158 (411)
Q Consensus 128 sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs 158 (411)
++.|+| -||++ |+.|.+.+...++..
T Consensus 110 ~vll~G--p~GtG---KTtlar~ia~~l~~~ 135 (543)
T 3m6a_A 110 ILCLAG--PPGVG---KTSLAKSIAKSLGRK 135 (543)
T ss_dssp EEEEES--SSSSS---HHHHHHHHHHHHTCE
T ss_pred EEEEEC--CCCCC---HHHHHHHHHHhcCCC
Confidence 688999 99999 999999998887543
No 44
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=82.20 E-value=8.2 Score=39.77 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHHHhhhccccCCcccchhhHHHHHHhhcCCCCCCHHHHHHHHH
Q psy899 328 KTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALA 381 (411)
Q Consensus 328 ~it~~dLh~ll~LAR~~~~~~~~~~~~~~~~~rLlalS~G~~~lt~e~W~~a~~ 381 (411)
..+.+||..++.-|- ++|...|...++.+++..|..
T Consensus 219 G~sgadL~~lv~~Aa------------------l~A~~~~~~~I~~~dl~~al~ 254 (476)
T 2ce7_A 219 GFVGADLENLVNEAA------------------LLAAREGRDKITMKDFEEAID 254 (476)
T ss_dssp TCCHHHHHHHHHHHH------------------HHHHHTTCSSBCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHH------------------HHHHHcCCCeecHHHHHHHHH
Confidence 456788888888777 788888888899988887764
No 45
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=80.33 E-value=20 Score=34.01 Aligned_cols=22 Identities=9% Similarity=-0.067 Sum_probs=17.6
Q ss_pred EEEEeecCCCCccchhHHHHHHHHHHh
Q psy899 128 SLNIFHRDLATSCSDYAQMLYDILKLL 154 (411)
Q Consensus 128 sLnL~g~~~P~~~~~~~s~L~~~l~~L 154 (411)
++.|+| -||++ |+.|.+.+..-
T Consensus 47 ~vll~G--~~G~G---KT~la~~l~~~ 68 (384)
T 2qby_B 47 SNLFLG--LTGTG---KTFVSKYIFNE 68 (384)
T ss_dssp EEEEEE--CTTSS---HHHHHHHHHHH
T ss_pred cEEEEC--CCCCC---HHHHHHHHHHH
Confidence 789999 99999 88877766554
No 46
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=79.59 E-value=4.3 Score=38.77 Aligned_cols=67 Identities=10% Similarity=0.236 Sum_probs=39.5
Q ss_pred ceEEEEeecCCCCccchhHHHHHHHHHHhccceEEeeccccccccCCcceeecCCCCcccccceeee---CCcEEEEecC
Q psy899 126 KFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQLS---SSTYLILDEI 202 (411)
Q Consensus 126 ~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt~~~LN~~~l~P~kD~~~~~L~aG~LQLa---~gT~lvIDEt 202 (411)
.-++.|.| -||++ |+.|.+.+..-+... ++.++...+.+... ++........+..+ ..++++|||.
T Consensus 51 ~~~vLl~G--ppGtG---KT~la~aia~~~~~~-~~~v~~~~l~~~~~-----g~~~~~~~~~f~~a~~~~~~vl~iDEi 119 (322)
T 3eie_A 51 TSGILLYG--PPGTG---KSYLAKAVATEANST-FFSVSSSDLVSKWM-----GESEKLVKQLFAMARENKPSIIFIDQV 119 (322)
T ss_dssp CCEEEEEC--SSSSC---HHHHHHHHHHHHTCE-EEEEEHHHHHTTTG-----GGHHHHHHHHHHHHHHTSSEEEEEECG
T ss_pred CCeEEEEC--CCCCc---HHHHHHHHHHHHCCC-EEEEchHHHhhccc-----chHHHHHHHHHHHHHhcCCeEEEechh
Confidence 34689999 99999 999998887766443 33444333322211 01111222233332 3479999999
Q ss_pred C
Q psy899 203 H 203 (411)
Q Consensus 203 ~ 203 (411)
+
T Consensus 120 d 120 (322)
T 3eie_A 120 D 120 (322)
T ss_dssp G
T ss_pred h
Confidence 8
No 47
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.37 E-value=21 Score=36.42 Aligned_cols=187 Identities=9% Similarity=0.173 Sum_probs=98.6
Q ss_pred EEEeecCCCCccchhHHHHHHHHHHhccceEEeeccccccccCCcceeecCCCCcccccceeee---CCcEEEEecCC-C
Q psy899 129 LNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQLS---SSTYLILDEIH-L 204 (411)
Q Consensus 129 LnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt~~~LN~~~l~P~kD~~~~~L~aG~LQLa---~gT~lvIDEt~-L 204 (411)
+.|.| -||++ |+.|.+.++.-+-.. ++.++...+-+.. -+++..+..-+...| ...++.|||.+ +
T Consensus 218 vLL~G--PPGtG---KTllAkAiA~e~~~~-~~~v~~s~l~sk~-----~Gese~~ir~~F~~A~~~~P~IifiDEiDai 286 (437)
T 4b4t_L 218 VLLYG--PPGTG---KTLLAKAVAATIGAN-FIFSPASGIVDKY-----IGESARIIREMFAYAKEHEPCIIFMDEVDAI 286 (437)
T ss_dssp EEEES--CTTSS---HHHHHHHHHHHHTCE-EEEEEGGGTCCSS-----SSHHHHHHHHHHHHHHHSCSEEEEEECCCSS
T ss_pred EEEEC--CCCCc---HHHHHHHHHHHhCCC-EEEEehhhhcccc-----chHHHHHHHHHHHHHHhcCCceeeeeccccc
Confidence 68999 99999 999998887765443 3444444443222 111222222233333 35789999998 3
Q ss_pred CCCccc---cccchHHHHHHHHHHcCccceeecCCccccccCCCeeEeecCC------CCC-C--cceEEEecCCCCCch
Q psy899 205 QPGQLN---NTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSDTK------SML-P--SDCHIKLKPDPSCSS 272 (411)
Q Consensus 205 ~eG~L~---~~Gv~N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~gK------S~l-p--~Dl~vpl~~~~~~~~ 272 (411)
-...-+ ....+-...+..++.+ .| .+.. .+--++|.+..+ .++ | ||..|.+.. |+.
T Consensus 287 ~~~R~~~~~~~~~~~~~~l~~lL~~----lD-g~~~----~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~l-Pd~-- 354 (437)
T 4b4t_L 287 GGRRFSEGTSADREIQRTLMELLTQ----MD-GFDN----LGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPL-PNE-- 354 (437)
T ss_dssp SCCCSSSCCSSTTHHHHHHHHHHHH----HH-SSSC----TTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCC-CCH--
T ss_pred ccccccCCCCcchHHHHHHHHHHHH----hh-cccC----CCCeEEEEecCCchhhCHHHhCCCccceeeecCC-cCH--
Confidence 211100 0111112223333331 11 1111 111123333332 233 3 777776643 221
Q ss_pred hHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhccccCCcc
Q psy899 273 VIRETFSAAHQYLKPELLNKIRTYISWIQNRGFDIPENLTEIVQKDFVEMRKENKKTDANDLHTLIVLARLEHLRLRPAT 352 (411)
Q Consensus 273 ~~~e~i~~~~~~~~~~~l~~lR~YLa~aR~~~~~i~ee~~~~IqddFV~~R~~~~~it~~dLh~ll~LAR~~~~~~~~~~ 352 (411)
+...+.|+.|+..... ...++ ..+ | . + .....|..|+..+.+-|-
T Consensus 355 --------------~~R~~Il~~~~~~~~~-~~d~d--l~~-l-----A-~-~t~G~sGADi~~l~~eA~---------- 399 (437)
T 4b4t_L 355 --------------AGRLEIFKIHTAKVKK-TGEFD--FEA-A-----V-K-MSDGFNGADIRNCATEAG---------- 399 (437)
T ss_dssp --------------HHHHHHHHHHHHTSCB-CSCCC--HHH-H-----H-H-TCCSCCHHHHHHHHHHHH----------
T ss_pred --------------HHHHHHHHHHhcCCCC-CcccC--HHH-H-----H-H-hCCCCCHHHHHHHHHHHH----------
Confidence 1245567777654332 12221 111 1 1 1 123479999999999888
Q ss_pred cchhhHHHHHHhhcCCCCCCHHHHHHHHH
Q psy899 353 HYQVDLIRLMSLSHGHSELTEDMWKVALA 381 (411)
Q Consensus 353 ~~~~~~~rLlalS~G~~~lt~e~W~~a~~ 381 (411)
+.|+..|...+|.+++..|.+
T Consensus 400 --------~~air~~~~~i~~~d~~~Al~ 420 (437)
T 4b4t_L 400 --------FFAIRDDRDHINPDDLMKAVR 420 (437)
T ss_dssp --------HHHHHTTCSSBCHHHHHHHHH
T ss_pred --------HHHHHcCCCCCCHHHHHHHHH
Confidence 899999999999999988863
No 48
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.17 E-value=11 Score=38.78 Aligned_cols=186 Identities=15% Similarity=0.203 Sum_probs=98.9
Q ss_pred EEEeecCCCCccchhHHHHHHHHHHhccceEEeeccccccccCCcceeecCCCCcccccceeeeC---CcEEEEecCC-C
Q psy899 129 LNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQLSS---STYLILDEIH-L 204 (411)
Q Consensus 129 LnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt~~~LN~~~l~P~kD~~~~~L~aG~LQLa~---gT~lvIDEt~-L 204 (411)
++|.| -||++ |+.|.+.++.-+-.. ++.++...+-+.. -+++.++..-++..|. -.++.|||.+ +
T Consensus 219 vLLyG--PPGTG---KTlLAkAiA~e~~~~-fi~v~~s~l~sk~-----vGesek~ir~lF~~Ar~~aP~IIfiDEiDai 287 (437)
T 4b4t_I 219 VILYG--APGTG---KTLLAKAVANQTSAT-FLRIVGSELIQKY-----LGDGPRLCRQIFKVAGENAPSIVFIDEIDAI 287 (437)
T ss_dssp EEEES--STTTT---HHHHHHHHHHHHTCE-EEEEESGGGCCSS-----SSHHHHHHHHHHHHHHHTCSEEEEEEEESSS
T ss_pred CceEC--CCCch---HHHHHHHHHHHhCCC-EEEEEHHHhhhcc-----CchHHHHHHHHHHHHHhcCCcEEEEehhhhh
Confidence 79999 99999 999999888765443 4445554443322 1112222222233222 3689999998 3
Q ss_pred CCCc--cccccch-HHHHHHHHHHcCccceeecCCccccccCCCeeEe-ecCC------CCC---CcceEEEecCCCCCc
Q psy899 205 QPGQ--LNNTGCL-NVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSL-SDTK------SML---PSDCHIKLKPDPSCS 271 (411)
Q Consensus 205 ~eG~--L~~~Gv~-N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliL-S~gK------S~l---p~Dl~vpl~~~~~~~ 271 (411)
-... -+..|.. ....+..++++ .| .+ ...-+++|+ +..+ .++ .||..|.+.. |+.
T Consensus 288 ~~~R~~~~~~~~~~~~~~l~~LL~~----lD-g~-----~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~l-Pd~- 355 (437)
T 4b4t_I 288 GTKRYDSNSGGEREIQRTMLELLNQ----LD-GF-----DDRGDVKVIMATNKIETLDPALIRPGRIDRKILFEN-PDL- 355 (437)
T ss_dssp SCCCSCSSCSSCCHHHHHHHHHHHH----HH-HC-----CCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCC-CCH-
T ss_pred cccCCCCCCCccHHHHHHHHHHHHH----hh-Cc-----CCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCC-cCH-
Confidence 2211 1112221 22333444432 11 11 111223333 3222 244 2777766542 211
Q ss_pred hhHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhccccCCc
Q psy899 272 SVIRETFSAAHQYLKPELLNKIRTYISWIQNRGFDIPENLTEIVQKDFVEMRKENKKTDANDLHTLIVLARLEHLRLRPA 351 (411)
Q Consensus 272 ~~~~e~i~~~~~~~~~~~l~~lR~YLa~aR~~~~~i~ee~~~~IqddFV~~R~~~~~it~~dLh~ll~LAR~~~~~~~~~ 351 (411)
+...+.|+.|+.... ....++ ..+ +..+ ....|..|+..+.+-|-
T Consensus 356 ---------------~~R~~Il~~~l~~~~-l~~dvd--l~~------LA~~--T~GfSGADI~~l~~eA~--------- 400 (437)
T 4b4t_I 356 ---------------STKKKILGIHTSKMN-LSEDVN--LET------LVTT--KDDLSGADIQAMCTEAG--------- 400 (437)
T ss_dssp ---------------HHHHHHHHHHHTTSC-BCSCCC--HHH------HHHH--CCSCCHHHHHHHHHHHH---------
T ss_pred ---------------HHHHHHHHHHhcCCC-CCCcCC--HHH------HHHh--CCCCCHHHHHHHHHHHH---------
Confidence 124555666653221 111221 111 1112 22479999999999888
Q ss_pred ccchhhHHHHHHhhcCCCCCCHHHHHHHHH
Q psy899 352 THYQVDLIRLMSLSHGHSELTEDMWKVALA 381 (411)
Q Consensus 352 ~~~~~~~~rLlalS~G~~~lt~e~W~~a~~ 381 (411)
+.|+..+...+|.+++..|.+
T Consensus 401 ---------~~Air~~~~~It~eDf~~Al~ 421 (437)
T 4b4t_I 401 ---------LLALRERRMQVTAEDFKQAKE 421 (437)
T ss_dssp ---------HHHHHTTCSCBCHHHHHHHHH
T ss_pred ---------HHHHHcCCCccCHHHHHHHHH
Confidence 899999999999999998864
No 49
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=78.81 E-value=36 Score=34.73 Aligned_cols=89 Identities=12% Similarity=0.149 Sum_probs=46.8
Q ss_pred eEEEEeecCCCCccchhHHHHHHHHHHhccceEEeeccccccccCCcc-e-eecC-CCCcccccce--------eeeCCc
Q psy899 127 FSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETTMI-P-RKDY-NTNRLKSGLL--------QLSSST 195 (411)
Q Consensus 127 ~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt~~~LN~~~l~-P-~kD~-~~~~L~aG~L--------QLa~gT 195 (411)
-++.|+| -||++ |+.+...+..-+. ..++.++...+....+. . .+.. .... ..|.+ .-..++
T Consensus 78 ~~lLL~G--ppGtG---KTtla~~la~~l~-~~~i~in~s~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 150 (516)
T 1sxj_A 78 RAAMLYG--PPGIG---KTTAAHLVAQELG-YDILEQNASDVRSKTLLNAGVKNALDNMS-VVGYFKHNEEAQNLNGKHF 150 (516)
T ss_dssp SEEEEEC--STTSS---HHHHHHHHHHHTT-CEEEEECTTSCCCHHHHHHTGGGGTTBCC-STTTTTC----CCSSTTSE
T ss_pred cEEEEEC--CCCCC---HHHHHHHHHHHcC-CCEEEEeCCCcchHHHHHHHHHHHhcccc-HHHHHhhhhhhhhccCCCe
Confidence 3789999 99999 9999888877663 22333332222110000 0 0000 0000 01111 224568
Q ss_pred EEEEecCC-CCCCccccccchHHHHHHHHHHcC
Q psy899 196 YLILDEIH-LQPGQLNNTGCLNVKALSSVVNNQ 227 (411)
Q Consensus 196 ~lvIDEt~-L~eG~L~~~Gv~N~~AL~~li~~Q 227 (411)
+++|||.+ |..+. ...+.+|..+++..
T Consensus 151 vliIDEid~l~~~~-----~~~l~~L~~~l~~~ 178 (516)
T 1sxj_A 151 VIIMDEVDGMSGGD-----RGGVGQLAQFCRKT 178 (516)
T ss_dssp EEEECSGGGCCTTS-----TTHHHHHHHHHHHC
T ss_pred EEEEECCCccchhh-----HHHHHHHHHHHHhc
Confidence 89999997 54321 13457788877753
No 50
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=78.62 E-value=8.9 Score=39.72 Aligned_cols=64 Identities=9% Similarity=-0.017 Sum_probs=39.0
Q ss_pred EEEeecCCCCccchhHHHHHHHHHHhccceEEeeccccccccCCcceeecCCCCcccccceeeeCC---cEEEEecCC
Q psy899 129 LNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQLSSS---TYLILDEIH 203 (411)
Q Consensus 129 LnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt~~~LN~~~l~P~kD~~~~~L~aG~LQLa~g---T~lvIDEt~ 203 (411)
+.|+| -||++ |+.|.+.+...+. ..++.++...+.... ......-...++|.+.. .+++|||.+
T Consensus 67 vLL~G--ppGtG---KTtLaraIa~~~~-~~~i~i~g~~~~~~~-----~g~~~~~v~~lfq~a~~~~p~il~IDEId 133 (499)
T 2dhr_A 67 VLLVG--PPGVG---KTHLARAVAGEAR-VPFITASGSDFVEMF-----VGVGAARVRDLFETAKRHAPCIVFIDEID 133 (499)
T ss_dssp EEEEC--SSSSS---HHHHHHHHHHHTT-CCEEEEEGGGGTSSC-----TTHHHHHHHHHTTTSSSSSSCEEEEECGG
T ss_pred EEEEC--CCCCC---HHHHHHHHHHHhC-CCEEEEehhHHHHhh-----hhhHHHHHHHHHHHHHhcCCCEEEEehHH
Confidence 89999 99999 9999999988876 333444333332211 00000112344555543 789999996
No 51
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=78.13 E-value=21 Score=34.17 Aligned_cols=67 Identities=18% Similarity=0.286 Sum_probs=41.3
Q ss_pred eEEEEeecCCCCccchhHHHHHHHHHHhccceEEeeccccccccCCcceeecCCCCcccccceee---eCCcEEEEecCC
Q psy899 127 FSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQL---SSSTYLILDEIH 203 (411)
Q Consensus 127 ~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt~~~LN~~~l~P~kD~~~~~L~aG~LQL---a~gT~lvIDEt~ 203 (411)
-++.|.| -||++ |+.|.+.+..-+....++.++...+.+... .+.......++.. ...++++|||.+
T Consensus 46 ~~iLL~G--ppGtG---KT~la~ala~~~~~~~~~~i~~~~l~~~~~-----g~~~~~~~~lf~~a~~~~~~vl~iDEid 115 (322)
T 1xwi_A 46 RGILLFG--PPGTG---KSYLAKAVATEANNSTFFSISSSDLVSKWL-----GESEKLVKNLFQLARENKPSIIFIDEID 115 (322)
T ss_dssp SEEEEES--SSSSC---HHHHHHHHHHHTTSCEEEEEECCSSCCSSC-----CSCHHHHHHHHHHHHHTSSEEEEEETTT
T ss_pred ceEEEEC--CCCcc---HHHHHHHHHHHcCCCcEEEEEhHHHHhhhh-----hHHHHHHHHHHHHHHhcCCcEEEeecHH
Confidence 4689999 99999 999999888777555555555444432210 1111122222222 345799999998
No 52
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=77.58 E-value=32 Score=29.13 Aligned_cols=85 Identities=11% Similarity=0.010 Sum_probs=41.7
Q ss_pred EEEEeecCCCCccchhHHHHHHHHHHhc-c---ceEEeeccccccccCCcceeecCCCCcccccceeeeCCcEEEEecCC
Q psy899 128 SLNIFHRDLATSCSDYAQMLYDILKLLV-C---KSHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQLSSSTYLILDEIH 203 (411)
Q Consensus 128 sLnL~g~~~P~~~~~~~s~L~~~l~~L~-P---rs~yl~lt~~~LN~~~l~P~kD~~~~~L~aG~LQLa~gT~lvIDEt~ 203 (411)
++.|+| -||++ |+.+.+.+..-+ . ...++.+......+.. ...+.-........+.-..+.+++|||.+
T Consensus 40 ~~ll~G--~~G~G---KT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~vliiDe~~ 112 (226)
T 2chg_A 40 HLLFSG--PPGTG---KTATAIALARDLFGENWRDNFIEMNASDERGID--VVRHKIKEFARTAPIGGAPFKIIFLDEAD 112 (226)
T ss_dssp CEEEEC--STTSS---HHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHH--HHHHHHHHHHTSCCSTTCSCEEEEEETGG
T ss_pred eEEEEC--CCCCC---HHHHHHHHHHHHhccccccceEEeccccccChH--HHHHHHHHHhcccCCCccCceEEEEeChh
Confidence 489999 99999 888877665433 1 1222222211110000 00000000000001112467899999996
Q ss_pred CCCCccccccchHHHHHHHHHHc
Q psy899 204 LQPGQLNNTGCLNVKALSSVVNN 226 (411)
Q Consensus 204 L~eG~L~~~Gv~N~~AL~~li~~ 226 (411)
........+|..+++.
T Consensus 113 -------~l~~~~~~~l~~~l~~ 128 (226)
T 2chg_A 113 -------ALTADAQAALRRTMEM 128 (226)
T ss_dssp -------GSCHHHHHHHHHHHHH
T ss_pred -------hcCHHHHHHHHHHHHh
Confidence 2333456778887775
No 53
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=77.52 E-value=20 Score=35.95 Aligned_cols=132 Identities=16% Similarity=0.143 Sum_probs=82.0
Q ss_pred cEEEEecCCCCCCccccccchHHHHHHHHHHcCccceee--c---------CCccccccCCCeeEeecCCCCCCcceEEE
Q psy899 195 TYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDF--Q---------FYDGTFPTDIPVLSLSDTKSMLPSDCHIK 263 (411)
Q Consensus 195 T~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF--~---------y~~ie~~~Dl~vliLS~gKS~lp~Dl~vp 263 (411)
++++|||.. .+..+-..+|..+|+...-.+-+ . ...+..+-.+|..++|| |-. +.
T Consensus 297 ~VliIDEa~-------~l~~~a~~aLlk~lEe~~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR------~~~-~~ 362 (456)
T 2c9o_A 297 GVLFVDEVH-------MLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDR------VMI-IR 362 (456)
T ss_dssp CEEEEESGG-------GCBHHHHHHHHHHTTSTTCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTT------EEE-EE
T ss_pred eEEEEechh-------hcCHHHHHHHHHHhhccCCCEEEEecCCccccccccccccccccCChhHHhh------cce-ee
Confidence 699999996 45567888999998865444211 1 11233455566667777 543 23
Q ss_pred ecCCCCCchhHHHHHHHhhhcCChhhHHHHHHHHHHh-hccCCCCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q psy899 264 LKPDPSCSSVIRETFSAAHQYLKPELLNKIRTYISWI-QNRGFDIPENLTEIVQKDFVEMRKENKKTDANDLHTLIVLAR 342 (411)
Q Consensus 264 l~~~~~~~~~~~e~i~~~~~~~~~~~l~~lR~YLa~a-R~~~~~i~ee~~~~IqddFV~~R~~~~~it~~dLh~ll~LAR 342 (411)
+.+-. .+.++.||... ....+.+++++.+.|...-.+ + +.+.-..++..|+
T Consensus 363 ~~~~~---------------------~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~----g---~~r~a~~ll~~a~ 414 (456)
T 2c9o_A 363 TMLYT---------------------PQEMKQIIKIRAQTEGINISEEALNHLGEIGTK----T---TLRYSVQLLTPAN 414 (456)
T ss_dssp CCCCC---------------------HHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHH----S---CHHHHHHTHHHHH
T ss_pred CCCCC---------------------HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccC----C---CHHHHHHHHHHHH
Confidence 33221 22334444322 233567888888877552211 1 4566666777676
Q ss_pred hhccccCCcccchhhHHHHHHhhcCCCCCCHHHHHHHHHH--HHHH
Q psy899 343 LEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALAM--EKER 386 (411)
Q Consensus 343 ~~~~~~~~~~~~~~~~~rLlalS~G~~~lt~e~W~~a~~L--E~~R 386 (411)
.+|...|...+|.++-..|..+ +..|
T Consensus 415 ------------------~~A~~~~~~~v~~~~v~~~~~~~~d~~~ 442 (456)
T 2c9o_A 415 ------------------LLAKINGKDSIEKEHVEEISELFYDAKS 442 (456)
T ss_dssp ------------------HHHHHTTCSSBCHHHHHHHHHHSCCHHH
T ss_pred ------------------HHHhhcCCCccCHHHHHHHHHHhcChHH
Confidence 8898999999999999999888 5444
No 54
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=75.88 E-value=13 Score=34.28 Aligned_cols=35 Identities=23% Similarity=0.220 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHHHhhhccccCCcccchhhHHHHHHhhcCCCCCCHHHHHHHH
Q psy899 328 KTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVAL 380 (411)
Q Consensus 328 ~it~~dLh~ll~LAR~~~~~~~~~~~~~~~~~rLlalS~G~~~lt~e~W~~a~ 380 (411)
..+.+||..++.-|- ++|...|...+|.++.+.|.
T Consensus 243 G~~~~dl~~l~~~a~------------------~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 243 GFVGADLENLLNEAA------------------LLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp TCCHHHHHHHHHHHH------------------HHHHHTTCCSBCHHHHHHHT
T ss_pred CCCHHHHHHHHHHHH------------------HHHHHhCCCCcCHHHHHHHh
Confidence 457799999998887 78888898899999988764
No 55
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=74.78 E-value=1.9 Score=39.55 Aligned_cols=35 Identities=23% Similarity=0.259 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHHhhhccccCCcccchhhHHHHHHhhcCCCCCCHHHHHHHH
Q psy899 328 KTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVAL 380 (411)
Q Consensus 328 ~it~~dLh~ll~LAR~~~~~~~~~~~~~~~~~rLlalS~G~~~lt~e~W~~a~ 380 (411)
..+.+++..++.-|. ++|...|...++.+++..|.
T Consensus 216 g~~g~dl~~l~~~a~------------------~~a~~~~~~~i~~~~~~~a~ 250 (268)
T 2r62_A 216 GLAGADLANIINEAA------------------LLAGRNNQKEVRQQHLKEAV 250 (268)
T ss_dssp SSCHHHHHHHHHHHH------------------HTTSSSCCCSCCHHHHHTSC
T ss_pred CCCHHHHHHHHHHHH------------------HHHHHhccCCcCHHHHHHHH
Confidence 367789999998888 88888888899999987654
No 56
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=74.76 E-value=19 Score=33.75 Aligned_cols=23 Identities=4% Similarity=-0.097 Sum_probs=18.6
Q ss_pred EEEEeecCCCCccchhHHHHHHHHHHhc
Q psy899 128 SLNIFHRDLATSCSDYAQMLYDILKLLV 155 (411)
Q Consensus 128 sLnL~g~~~P~~~~~~~s~L~~~l~~L~ 155 (411)
++.|.| -||++ |+.+.+.+...+
T Consensus 60 ~~ll~G--~~G~G---KT~la~~la~~l 82 (353)
T 1sxj_D 60 HMLFYG--PPGTG---KTSTILALTKEL 82 (353)
T ss_dssp CEEEEC--STTSS---HHHHHHHHHHHH
T ss_pred EEEEEC--CCCCC---HHHHHHHHHHHh
Confidence 389999 99999 888887776654
No 57
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=73.84 E-value=25 Score=32.98 Aligned_cols=23 Identities=9% Similarity=0.143 Sum_probs=18.6
Q ss_pred EEEEeecCCCCccchhHHHHHHHHHHhc
Q psy899 128 SLNIFHRDLATSCSDYAQMLYDILKLLV 155 (411)
Q Consensus 128 sLnL~g~~~P~~~~~~~s~L~~~l~~L~ 155 (411)
++.|+| -||++ |+.|.+.+...+
T Consensus 47 ~vli~G--~~G~G---KTtl~~~l~~~~ 69 (386)
T 2qby_A 47 NIFIYG--LTGTG---KTAVVKFVLSKL 69 (386)
T ss_dssp CEEEEE--CTTSS---HHHHHHHHHHHH
T ss_pred eEEEEC--CCCCC---HHHHHHHHHHHH
Confidence 578999 99999 888887776654
No 58
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=72.63 E-value=27 Score=35.00 Aligned_cols=97 Identities=16% Similarity=0.171 Sum_probs=52.1
Q ss_pred hcCcHHHHHHHHHHHhcceeeecCC--ceeeeceEEEEeecCCCCccchhHHHHHHHHHHhccceEEeeccccccccCCc
Q psy899 96 LMGDDVAADYLICYLLSRVYCRDEV--GFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETTM 173 (411)
Q Consensus 96 l~GD~laAEyLLL~L~S~V~~r~d~--~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt~~~LN~~~l 173 (411)
+.|...+++.|.-.+..-. .+++. +.....-++.|.| -||++ |+.|.+.+..-+....++.++...+.+..
T Consensus 136 i~G~~~~k~~l~~~v~~p~-~~~~~~~~~~~~~~~vLL~G--ppGtG---KT~lA~aia~~~~~~~~~~v~~~~l~~~~- 208 (444)
T 2zan_A 136 VAGLEGAKEALKEAVILPI-KFPHLFTGKRTPWRGILLFG--PPGTG---KSYLAKAVATEANNSTFFSISSSDLVSKW- 208 (444)
T ss_dssp SCSCHHHHHHHHHHHTHHH-HCTTTTSGGGCCCSEEEEEC--STTSS---HHHHHHHHHHHCCSSEEEEECCC-------
T ss_pred hcCHHHHHHHHHHHHHHHh-hCHHHhhccCCCCceEEEEC--CCCCC---HHHHHHHHHHHcCCCCEEEEeHHHHHhhh-
Confidence 5677777776654442211 01111 0111234689999 99999 99999999887755555555544443221
Q ss_pred ceeecCCCCcccccceee---eCCcEEEEecCC
Q psy899 174 IPRKDYNTNRLKSGLLQL---SSSTYLILDEIH 203 (411)
Q Consensus 174 ~P~kD~~~~~L~aG~LQL---a~gT~lvIDEt~ 203 (411)
-.........++.. ...++++|||.+
T Consensus 209 ----~g~~~~~~~~~f~~a~~~~~~vl~iDEid 237 (444)
T 2zan_A 209 ----LGESEKLVKNLFQLARENKPSIIFIDEID 237 (444)
T ss_dssp -------CCCTHHHHHHHHHHSCSEEEEESCTT
T ss_pred ----cchHHHHHHHHHHHHHHcCCeEEEEechH
Confidence 11112222223332 345899999998
No 59
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.11 E-value=16 Score=37.83 Aligned_cols=186 Identities=11% Similarity=0.146 Sum_probs=98.0
Q ss_pred EEEeecCCCCccchhHHHHHHHHHHhccceEEeeccccccccCCcceeecCCCCcccccceeee---CCcEEEEecCC-C
Q psy899 129 LNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQLS---SSTYLILDEIH-L 204 (411)
Q Consensus 129 LnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt~~~LN~~~l~P~kD~~~~~L~aG~LQLa---~gT~lvIDEt~-L 204 (411)
+.|.| -||++ |+.|.+.++.-+-. .++.++...+-+.. -+++.+...-+...| ...++.|||.+ +
T Consensus 246 ILLyG--PPGTG---KTlLAkAiA~e~~~-~fi~vs~s~L~sk~-----vGesek~ir~lF~~Ar~~aP~IIfiDEiDai 314 (467)
T 4b4t_H 246 ILLYG--PPGTG---KTLCARAVANRTDA-TFIRVIGSELVQKY-----VGEGARMVRELFEMARTKKACIIFFDEIDAV 314 (467)
T ss_dssp EEECS--CTTSS---HHHHHHHHHHHHTC-EEEEEEGGGGCCCS-----SSHHHHHHHHHHHHHHHTCSEEEEEECCTTT
T ss_pred eEeeC--CCCCc---HHHHHHHHHhccCC-CeEEEEhHHhhccc-----CCHHHHHHHHHHHHHHhcCCceEeecccccc
Confidence 68999 99999 99999988776544 34445544443322 111222222223322 24789999999 3
Q ss_pred CCCccc-ccc--chHHHHHHHHHHcCccceeecCCccccccCCCeeEe-ecCC-C-----CC---CcceEEEecCCCCCc
Q psy899 205 QPGQLN-NTG--CLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSL-SDTK-S-----ML---PSDCHIKLKPDPSCS 271 (411)
Q Consensus 205 ~eG~L~-~~G--v~N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliL-S~gK-S-----~l---p~Dl~vpl~~~~~~~ 271 (411)
....-+ ..| ......+..++.+ .| . +...-+|+|+ +..+ . ++ .||..|.+... +.
T Consensus 315 ~~~R~~~~~~~~~~~~~~l~~lL~~----lD-g-----~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lP-d~- 382 (467)
T 4b4t_H 315 GGARFDDGAGGDNEVQRTMLELITQ----LD-G-----FDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLP-DL- 382 (467)
T ss_dssp SBCCSSSSCGGGGHHHHHHHHHHHH----HH-S-----SCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCC-CH-
T ss_pred cccccCcCCCccHHHHHHHHHHHHH----hh-c-----cCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCc-CH-
Confidence 221111 111 1112233333331 11 1 1112234433 2222 1 22 27777766532 11
Q ss_pred hhHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhccccCCc
Q psy899 272 SVIRETFSAAHQYLKPELLNKIRTYISWIQNRGFDIPENLTEIVQKDFVEMRKENKKTDANDLHTLIVLARLEHLRLRPA 351 (411)
Q Consensus 272 ~~~~e~i~~~~~~~~~~~l~~lR~YLa~aR~~~~~i~ee~~~~IqddFV~~R~~~~~it~~dLh~ll~LAR~~~~~~~~~ 351 (411)
+...+.||.|+.... ....++ . +. +..+ ....+..||..+.+-|-
T Consensus 383 ---------------~~R~~Ilk~~l~~~~-l~~dvd--l-~~-----LA~~--T~GfSGADI~~l~~eAa--------- 427 (467)
T 4b4t_H 383 ---------------EGRANIFRIHSKSMS-VERGIR--W-EL-----ISRL--CPNSTGAELRSVCTEAG--------- 427 (467)
T ss_dssp ---------------HHHHHHHHHHHTTSC-BCSSCC--H-HH-----HHHH--CCSCCHHHHHHHHHHHH---------
T ss_pred ---------------HHHHHHHHHHhcCCC-CCCCCC--H-HH-----HHHH--CCCCCHHHHHHHHHHHH---------
Confidence 124556666643221 222222 1 11 2222 22478999999999888
Q ss_pred ccchhhHHHHHHhhcCCCCCCHHHHHHHHH
Q psy899 352 THYQVDLIRLMSLSHGHSELTEDMWKVALA 381 (411)
Q Consensus 352 ~~~~~~~~rLlalS~G~~~lt~e~W~~a~~ 381 (411)
+.|+..+...+|.+++..|++
T Consensus 428 ---------~~Air~~~~~it~~Df~~Al~ 448 (467)
T 4b4t_H 428 ---------MFAIRARRKVATEKDFLKAVD 448 (467)
T ss_dssp ---------HHHHHHTCSSBCHHHHHHHHH
T ss_pred ---------HHHHHcCCCccCHHHHHHHHH
Confidence 899999999999999988764
No 60
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.17 E-value=46 Score=33.75 Aligned_cols=187 Identities=13% Similarity=0.131 Sum_probs=96.8
Q ss_pred EEEeecCCCCccchhHHHHHHHHHHhccceEEeeccccccccCCcceeecCCCCcccccceeee---CCcEEEEecCC-C
Q psy899 129 LNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQLS---SSTYLILDEIH-L 204 (411)
Q Consensus 129 LnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt~~~LN~~~l~P~kD~~~~~L~aG~LQLa---~gT~lvIDEt~-L 204 (411)
+.|.| -||++ |+.|.+.++.-+-. .++.++...+-+.. -+++.+...-++..| .-.++.|||.+ +
T Consensus 209 iLL~G--PPGtG---KT~lakAiA~~~~~-~~~~v~~~~l~~~~-----~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i 277 (428)
T 4b4t_K 209 VLLYG--PPGTG---KTMLVKAVANSTKA-AFIRVNGSEFVHKY-----LGEGPRMVRDVFRLARENAPSIIFIDEVDSI 277 (428)
T ss_dssp EEEES--CTTTT---HHHHHHHHHHHHTC-EEEEEEGGGTCCSS-----CSHHHHHHHHHHHHHHHTCSEEEEEECTHHH
T ss_pred EEEEC--CCCCC---HHHHHHHHHHHhCC-CeEEEecchhhccc-----cchhHHHHHHHHHHHHHcCCCeeechhhhhh
Confidence 79999 99999 99999988876643 34445544443222 111111222222222 24689999998 2
Q ss_pred CCCc--cccccc-hHHHHHHHHHHcCccceeecCCccccccCCCeeEe-ecC-CC-----CC---CcceEEEecCCCCCc
Q psy899 205 QPGQ--LNNTGC-LNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSL-SDT-KS-----ML---PSDCHIKLKPDPSCS 271 (411)
Q Consensus 205 ~eG~--L~~~Gv-~N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliL-S~g-KS-----~l---p~Dl~vpl~~~~~~~ 271 (411)
-... -...+- .....+..++++ .| .+.+ .-+++|+ +.. .. ++ .||..|.+..-|+..
T Consensus 278 ~~~R~~~~~~~~~~~~r~l~~lL~~----ld-g~~~-----~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~ 347 (428)
T 4b4t_K 278 ATKRFDAQTGSDREVQRILIELLTQ----MD-GFDQ-----STNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRR 347 (428)
T ss_dssp HCSCSSSCSCCCCHHHHHHHHHHHH----HH-HSCS-----SCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHH
T ss_pred hccccCCCCCCChHHHHHHHHHHHH----hh-CCCC-----CCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHH
Confidence 1110 111111 122234444432 11 1111 1123332 222 22 22 278777764333211
Q ss_pred hhHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhccccCCc
Q psy899 272 SVIRETFSAAHQYLKPELLNKIRTYISWIQNRGFDIPENLTEIVQKDFVEMRKENKKTDANDLHTLIVLARLEHLRLRPA 351 (411)
Q Consensus 272 ~~~~e~i~~~~~~~~~~~l~~lR~YLa~aR~~~~~i~ee~~~~IqddFV~~R~~~~~it~~dLh~ll~LAR~~~~~~~~~ 351 (411)
+....|+.|+.... ....++ ..+ | ..+ ....|..|+..+++-|-
T Consensus 348 ----------------~R~~Il~~~~~~~~-l~~~~d--l~~-l-----A~~--t~G~sgadi~~l~~eA~--------- 391 (428)
T 4b4t_K 348 ----------------ERRLIFGTIASKMS-LAPEAD--LDS-L-----IIR--NDSLSGAVIAAIMQEAG--------- 391 (428)
T ss_dssp ----------------HHHHHHHHHHHSSC-BCTTCC--HHH-H-----HHH--TTTCCHHHHHHHHHHHH---------
T ss_pred ----------------HHHHHHHHHhcCCC-CCcccC--HHH-H-----HHH--CCCCCHHHHHHHHHHHH---------
Confidence 13445565543221 112221 111 1 112 22478999999999888
Q ss_pred ccchhhHHHHHHhhcCCCCCCHHHHHHHHH
Q psy899 352 THYQVDLIRLMSLSHGHSELTEDMWKVALA 381 (411)
Q Consensus 352 ~~~~~~~~rLlalS~G~~~lt~e~W~~a~~ 381 (411)
+.|+..|+..++.++++.|..
T Consensus 392 ---------~~a~r~~~~~i~~~d~~~A~~ 412 (428)
T 4b4t_K 392 ---------LRAVRKNRYVILQSDLEEAYA 412 (428)
T ss_dssp ---------HHHHHTTCSSBCHHHHHHHHH
T ss_pred ---------HHHHHCCCCCCCHHHHHHHHH
Confidence 899999999999999998864
No 61
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=69.07 E-value=51 Score=31.06 Aligned_cols=24 Identities=8% Similarity=-0.076 Sum_probs=19.3
Q ss_pred EEEEeecCCCCccchhHHHHHHHHHHhcc
Q psy899 128 SLNIFHRDLATSCSDYAQMLYDILKLLVC 156 (411)
Q Consensus 128 sLnL~g~~~P~~~~~~~s~L~~~l~~L~P 156 (411)
++.|+| -||++ |+.|.+.+...++
T Consensus 46 ~~li~G--~~G~G---KTtl~~~l~~~~~ 69 (389)
T 1fnn_A 46 RATLLG--RPGTG---KTVTLRKLWELYK 69 (389)
T ss_dssp EEEEEC--CTTSS---HHHHHHHHHHHHT
T ss_pred eEEEEC--CCCCC---HHHHHHHHHHHHh
Confidence 678999 99999 9888887766553
No 62
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=68.11 E-value=29 Score=36.98 Aligned_cols=24 Identities=4% Similarity=-0.140 Sum_probs=19.1
Q ss_pred eEEEEeecCCCCccchhHHHHHHHHHHhc
Q psy899 127 FSLNIFHRDLATSCSDYAQMLYDILKLLV 155 (411)
Q Consensus 127 ~sLnL~g~~~P~~~~~~~s~L~~~l~~L~ 155 (411)
-++.|+| -||++ |+.+.+.+...+
T Consensus 208 ~~vlL~G--~~GtG---KT~la~~la~~l 231 (758)
T 1r6b_X 208 NNPLLVG--ESGVG---KTAIAEGLAWRI 231 (758)
T ss_dssp CEEEEEC--CTTSS---HHHHHHHHHHHH
T ss_pred CCeEEEc--CCCCC---HHHHHHHHHHHH
Confidence 3568999 99999 888888776654
No 63
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=65.61 E-value=11 Score=35.51 Aligned_cols=119 Identities=9% Similarity=0.130 Sum_probs=55.3
Q ss_pred eceEEEEeecCCCCccchhHHHHHHHHHHhccceEEeeccccccccCCcceeecCCCCcccccceeee-------CCcEE
Q psy899 125 GKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQLS-------SSTYL 197 (411)
Q Consensus 125 G~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt~~~LN~~~l~P~kD~~~~~L~aG~LQLa-------~gT~l 197 (411)
+...+.|.| -||++ |+.|.+.+..-+- ..++.++...+.+... +.........+..+ ..+++
T Consensus 35 ~p~~lLl~G--ppGtG---KT~la~aiA~~l~-~~~i~v~~~~l~~~~~-----g~~~~~i~~~f~~a~~~~~~~~~~vl 103 (293)
T 3t15_A 35 VPLILGIWG--GKGQG---KSFQCELVFRKMG-INPIMMSAGELESGNA-----GEPAKLIRQRYREAAEIIRKGNMCCL 103 (293)
T ss_dssp CCSEEEEEE--CTTSC---HHHHHHHHHHHHT-CCCEEEEHHHHHCC--------HHHHHHHHHHHHHHHHHTTSSCCCE
T ss_pred CCeEEEEEC--CCCCC---HHHHHHHHHHHhC-CCEEEEeHHHhhhccC-----chhHHHHHHHHHHHHHHHhcCCCeEE
Confidence 345688999 99999 8888888776653 2333344333322210 00111112233333 67899
Q ss_pred EEecCC-CCCCccc---c---ccchHHHHHHHHHHcCc-cceeecCCccccccCCCeeEeecCCCCC
Q psy899 198 ILDEIH-LQPGQLN---N---TGCLNVKALSSVVNNQR-MSYDFQFYDGTFPTDIPVLSLSDTKSML 256 (411)
Q Consensus 198 vIDEt~-L~eG~L~---~---~Gv~N~~AL~~li~~Q~-v~YdF~y~~ie~~~Dl~vliLS~gKS~l 256 (411)
+|||.+ +.. .-. . .+..-..+|-++|...+ +.++ ..+.....-++.++..|...+.+
T Consensus 104 ~iDEiD~~~~-~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~-~~~~~~~~~~v~vI~ttN~~~~l 168 (293)
T 3t15_A 104 FINDLDAGAG-RMGGTTQYTVNNQMVNATLMNIADNPTNVQLP-GMYNKQENARVPIIVTGNDFSTL 168 (293)
T ss_dssp EEECCC---------------CHHHHHHHHHHHHHCCC------------CCCCCCEEEECSSCCC-
T ss_pred EEechhhhcC-CCCCCccccchHHHHHHHHHHHhccccccccc-cccccccCCCcEEEEecCCcccC
Confidence 999997 322 111 1 11122366666665332 1222 22222233456666666654433
No 64
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=54.41 E-value=15 Score=34.57 Aligned_cols=23 Identities=9% Similarity=-0.018 Sum_probs=19.3
Q ss_pred EEEEeecCCCCccchhHHHHHHHHHHhc
Q psy899 128 SLNIFHRDLATSCSDYAQMLYDILKLLV 155 (411)
Q Consensus 128 sLnL~g~~~P~~~~~~~s~L~~~l~~L~ 155 (411)
++.|.| -||++ |+.|.+.+...+
T Consensus 39 ~lll~G--~~GtG---KT~la~~i~~~~ 61 (324)
T 1l8q_A 39 PIFIYG--SVGTG---KTHLLQAAGNEA 61 (324)
T ss_dssp SEEEEC--SSSSS---HHHHHHHHHHHH
T ss_pred eEEEEC--CCCCc---HHHHHHHHHHHH
Confidence 678999 99999 988888776655
No 65
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=45.43 E-value=7.5 Score=32.34 Aligned_cols=23 Identities=4% Similarity=-0.086 Sum_probs=18.1
Q ss_pred EEEEeecCCCCccchhHHHHHHHHHHhc
Q psy899 128 SLNIFHRDLATSCSDYAQMLYDILKLLV 155 (411)
Q Consensus 128 sLnL~g~~~P~~~~~~~s~L~~~l~~L~ 155 (411)
++.|+| -||++ |+.|.+.+..-+
T Consensus 45 ~~ll~G--~~G~G---KT~l~~~~~~~~ 67 (195)
T 1jbk_A 45 NPVLIG--EPGVG---KTAIVEGLAQRI 67 (195)
T ss_dssp EEEEEC--CTTSC---HHHHHHHHHHHH
T ss_pred ceEEEC--CCCCC---HHHHHHHHHHHH
Confidence 578999 99999 888877665554
No 66
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=42.22 E-value=73 Score=29.57 Aligned_cols=65 Identities=9% Similarity=0.084 Sum_probs=37.7
Q ss_pred EEEeecCCCCccchhHHHHHHHHHHhccceEEeeccccccccCCcceeecCCCCcccccceeee---CCcEEEEecCCC
Q psy899 129 LNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQLS---SSTYLILDEIHL 204 (411)
Q Consensus 129 LnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt~~~LN~~~l~P~kD~~~~~L~aG~LQLa---~gT~lvIDEt~L 204 (411)
+.|.| -||++ |+.|.+.+....... ++.+....+.+... .+..+...-+.|-+ ....+++||.+.
T Consensus 47 vlL~G--p~GtG---KTtLakala~~~~~~-~i~i~g~~l~~~~~-----~~~~~~i~~vf~~a~~~~p~i~~~Deid~ 114 (274)
T 2x8a_A 47 VLLAG--PPGCG---KTLLAKAVANESGLN-FISVKGPELLNMYV-----GESERAVRQVFQRAKNSAPCVIFFDEVDA 114 (274)
T ss_dssp EEEES--STTSC---HHHHHHHHHHHTTCE-EEEEETTTTCSSTT-----HHHHHHHHHHHHHHHHTCSEEEEEETCTT
T ss_pred EEEEC--CCCCc---HHHHHHHHHHHcCCC-EEEEEcHHHHhhhh-----hHHHHHHHHHHHHHHhcCCCeEeeehhhh
Confidence 88999 99999 999999998887653 33333333322110 00011112233333 246789999984
No 67
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=38.90 E-value=27 Score=38.04 Aligned_cols=98 Identities=15% Similarity=0.120 Sum_probs=40.6
Q ss_pred EEEEeecCCCCccchhHHHHHHHHHHhcc---------ceEEeeccccccccCCcceeecCCCCcccccceee----eCC
Q psy899 128 SLNIFHRDLATSCSDYAQMLYDILKLLVC---------KSHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQL----SSS 194 (411)
Q Consensus 128 sLnL~g~~~P~~~~~~~s~L~~~l~~L~P---------rs~yl~lt~~~LN~~~l~P~kD~~~~~L~aG~LQL----a~g 194 (411)
++.|+| -||++ |+.|.+.+..-+. ...++.++...+.+.. +.+.....++. .++.- ...
T Consensus 193 ~vlL~G--~pG~G---KT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~--~~~g~~~~~l~-~~~~~~~~~~~~ 264 (854)
T 1qvr_A 193 NPVLIG--EPGVG---KTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGA--KYRGEFEERLK-AVIQEVVQSQGE 264 (854)
T ss_dssp CCEEEE--CTTSC---HHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------------CHHHHHH-HHHHHHHTTCSS
T ss_pred ceEEEc--CCCCC---HHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccC--ccchHHHHHHH-HHHHHHHhcCCC
Confidence 468999 99999 8888887766542 2222333322221100 00000001121 11111 124
Q ss_pred cEEEEecCCCCCCcccccc-chHHHHHHHHHHcCccceee
Q psy899 195 TYLILDEIHLQPGQLNNTG-CLNVKALSSVVNNQRMSYDF 233 (411)
Q Consensus 195 T~lvIDEt~L~eG~L~~~G-v~N~~AL~~li~~Q~v~YdF 233 (411)
.+++|||.+.-.|.-...| ..-...|..+++...+.+-.
T Consensus 265 ~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~ 304 (854)
T 1qvr_A 265 VILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIG 304 (854)
T ss_dssp EEEEECCC-------------------HHHHHTTCCCEEE
T ss_pred eEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCeEEEE
Confidence 5899999983222211222 23345688888877666543
No 68
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=37.96 E-value=52 Score=30.63 Aligned_cols=77 Identities=13% Similarity=0.088 Sum_probs=41.8
Q ss_pred EEEeecCCCCccchhHHHHHHHHHHhcc-ceEEeeccccccccCCcceeecCCCCccc---ccceeeeCCcEEEEecCCC
Q psy899 129 LNIFHRDLATSCSDYAQMLYDILKLLVC-KSHYFELNVKSLNETTMIPRKDYNTNRLK---SGLLQLSSSTYLILDEIHL 204 (411)
Q Consensus 129 LnL~g~~~P~~~~~~~s~L~~~l~~L~P-rs~yl~lt~~~LN~~~l~P~kD~~~~~L~---aG~LQLa~gT~lvIDEt~L 204 (411)
+.+.| -||++ |+.+.+.+..-+. ...++.. +... . +.-...+. ...-..+++.+++|||.+
T Consensus 51 ~L~~G--~~G~G---KT~la~~la~~l~~~~~~i~~--~~~~------~-~~i~~~~~~~~~~~~~~~~~~vliiDEi~- 115 (324)
T 3u61_B 51 ILHSP--SPGTG---KTTVAKALCHDVNADMMFVNG--SDCK------I-DFVRGPLTNFASAASFDGRQKVIVIDEFD- 115 (324)
T ss_dssp EEECS--STTSS---HHHHHHHHHHHTTEEEEEEET--TTCC------H-HHHHTHHHHHHHBCCCSSCEEEEEEESCC-
T ss_pred EEeeC--cCCCC---HHHHHHHHHHHhCCCEEEEcc--cccC------H-HHHHHHHHHHHhhcccCCCCeEEEEECCc-
Confidence 56677 79999 8888887766553 3333332 1110 0 00000010 000011267899999996
Q ss_pred CCCcccccc-chHHHHHHHHHHc
Q psy899 205 QPGQLNNTG-CLNVKALSSVVNN 226 (411)
Q Consensus 205 ~eG~L~~~G-v~N~~AL~~li~~ 226 (411)
.+. .+...+|..+++.
T Consensus 116 ------~l~~~~~~~~L~~~le~ 132 (324)
T 3u61_B 116 ------RSGLAESQRHLRSFMEA 132 (324)
T ss_dssp ------CGGGHHHHHHHHHHHHH
T ss_pred ------ccCcHHHHHHHHHHHHh
Confidence 222 4566788888875
No 69
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=33.61 E-value=1.3e+02 Score=27.28 Aligned_cols=22 Identities=9% Similarity=-0.266 Sum_probs=17.5
Q ss_pred EEEEeecCCCCccchhHHHHHHHHHHh
Q psy899 128 SLNIFHRDLATSCSDYAQMLYDILKLL 154 (411)
Q Consensus 128 sLnL~g~~~P~~~~~~~s~L~~~l~~L 154 (411)
++.|+| -||++ |+.+...+..-
T Consensus 40 ~~ll~G--~~G~G---Kt~la~~l~~~ 61 (319)
T 2chq_A 40 HLLFSG--PPGTG---KTATAIALARD 61 (319)
T ss_dssp CEEEES--SSSSS---HHHHHHHHHHH
T ss_pred eEEEEC--cCCcC---HHHHHHHHHHH
Confidence 489999 99999 88887766554
No 70
>2kjg_A Archaeal protein SSO6904; hypothetical protein, helical protein, metal binding protein; NMR {Sulfolobus solfataricus}
Probab=32.30 E-value=46 Score=26.88 Aligned_cols=55 Identities=16% Similarity=0.252 Sum_probs=43.2
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHhhhccccCCcccchhhHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhc
Q psy899 316 QKDFVEMRKENKKTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALAMEKERKSR 389 (411)
Q Consensus 316 qddFV~~R~~~~~it~~dLh~ll~LAR~~~~~~~~~~~~~~~~~rLlalS~G~~~lt~e~W~~a~~LE~~R~~R 389 (411)
|++||+.||-..+++-+.+...|..-+ +-+-.|-+..|--.+-++-.+|.-|+.|
T Consensus 6 qeEFveLrkfKgkvd~~~v~~IL~eiE-------------------~~~rksnni~tS~If~Yanh~~~V~knk 60 (99)
T 2kjg_A 6 DPEFVKLRQFKGKVNFNLVMQILDEIE-------------------LDLRGSDNIKTSIIYVYSSHLDEIRKNK 60 (99)
T ss_dssp CHHHHHHHHHTCCSCHHHHHHHHHHHH-------------------HHHHHSSCHHHHHHHHHHHTHHHHHHTH
T ss_pred hHHHHHHHHHhcccCHHHHHHHHHHHH-------------------HHHhcCCchhhHHHHHHHHHHHHHHhhH
Confidence 578999999777788888888877666 4555666777777888888888888877
No 71
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=28.43 E-value=1.1e+02 Score=28.14 Aligned_cols=94 Identities=14% Similarity=0.100 Sum_probs=54.0
Q ss_pred EEEEeecCCCCccchhHHHHHHHHHHhccceEEeeccccccccCCcceeecCCCCccccccee-eeCCcEEEEecCCCCC
Q psy899 128 SLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQ-LSSSTYLILDEIHLQP 206 (411)
Q Consensus 128 sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt~~~LN~~~l~P~kD~~~~~L~aG~LQ-La~gT~lvIDEt~L~e 206 (411)
++.+.| -|+++ |+.+...+...+. ...+.. . |+.. ... || +++.-.++|||.+
T Consensus 60 ~ili~G--PPGtG---KTt~a~ala~~l~-g~i~~f--a--ns~s--------~f~-----l~~l~~~kIiiLDEad--- 113 (212)
T 1tue_A 60 CLVFCG--PANTG---KSYFGMSFIHFIQ-GAVISF--V--NSTS--------HFW-----LEPLTDTKVAMLDDAT--- 113 (212)
T ss_dssp EEEEES--CGGGC---HHHHHHHHHHHHT-CEECCC--C--CSSS--------CGG-----GGGGTTCSSEEEEEEC---
T ss_pred EEEEEC--CCCCC---HHHHHHHHHHHhC-CCeeeE--E--eccc--------hhh-----hcccCCCCEEEEECCC---
Confidence 589999 99999 7777666666552 222111 1 1110 000 22 3445689999985
Q ss_pred CccccccchHH-HHHHHHHHcCccceeecCCccccccCCCeeEeec
Q psy899 207 GQLNNTGCLNV-KALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSD 251 (411)
Q Consensus 207 G~L~~~Gv~N~-~AL~~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~ 251 (411)
....+.+ ..+.+++.-..+..|+.|.+.....--|++|.|.
T Consensus 114 ----~~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN 155 (212)
T 1tue_A 114 ----TTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTN 155 (212)
T ss_dssp ----HHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEES
T ss_pred ----chhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecC
Confidence 1222333 4688899999999998886664444456677676
No 72
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=27.78 E-value=2.6e+02 Score=35.01 Aligned_cols=108 Identities=13% Similarity=0.111 Sum_probs=68.5
Q ss_pred eEEEEeecCCCCccchhHHHHHHHHHHhccceEEe-eccccccccCCcceeecCCCCcccccceeeeCCcEEEEecCCCC
Q psy899 127 FSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYF-ELNVKSLNETTMIPRKDYNTNRLKSGLLQLSSSTYLILDEIHLQ 205 (411)
Q Consensus 127 ~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl-~lt~~~LN~~~l~P~kD~~~~~L~aG~LQLa~gT~lvIDEt~L~ 205 (411)
++..+.| -||++ |..+.+.++..+-+-.+. ..+ +.+.. ++. .++-.|+.| .|..+|+||+.
T Consensus 646 ~~~~l~G--paGtG---KTe~vk~LA~~lg~~~v~~nc~-e~ld~------~~l--g~~~~g~~~--~Gaw~~~DE~n-- 707 (2695)
T 4akg_A 646 YGGCFFG--PAGTG---KTETVKAFGQNLGRVVVVFNCD-DSFDY------QVL--SRLLVGITQ--IGAWGCFDEFN-- 707 (2695)
T ss_dssp CEEEEEC--CTTSC---HHHHHHHHHHTTTCCCEEEETT-SSCCH------HHH--HHHHHHHHH--HTCEEEEETTT--
T ss_pred CCCcccC--CCCCC---cHHHHHHHHHHhCCcEEEEECC-CCCCh------hHh--hHHHHHHHh--cCCEeeehhhh--
Confidence 3466778 77888 888888887776654433 222 11111 111 334456554 37889999996
Q ss_pred CCccccccchHHHHH-------HHHHHcCccceeecCCccccccCCCeeEeec----CCCCCC
Q psy899 206 PGQLNNTGCLNVKAL-------SSVVNNQRMSYDFQFYDGTFPTDIPVLSLSD----TKSMLP 257 (411)
Q Consensus 206 eG~L~~~Gv~N~~AL-------~~li~~Q~v~YdF~y~~ie~~~Dl~vliLS~----gKS~lp 257 (411)
....+-++++ .+++...+..+.|.-..+..+-+..+.+.+. |++=||
T Consensus 708 -----r~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP 765 (2695)
T 4akg_A 708 -----RLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELP 765 (2695)
T ss_dssp -----SSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCC
T ss_pred -----hcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCccccc
Confidence 3344555555 7777777777777766677777777777775 666666
No 73
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=24.87 E-value=34 Score=34.52 Aligned_cols=24 Identities=4% Similarity=-0.104 Sum_probs=19.8
Q ss_pred EEEEeecCCCCccchhHHHHHHHHHHhcc
Q psy899 128 SLNIFHRDLATSCSDYAQMLYDILKLLVC 156 (411)
Q Consensus 128 sLnL~g~~~P~~~~~~~s~L~~~l~~L~P 156 (411)
++.|+| -||++ |+.|.+.+...+.
T Consensus 203 ~~LL~G--~pG~G---KT~la~~la~~l~ 226 (468)
T 3pxg_A 203 NPVLIG--EPGVG---KTAIAEGLAQQII 226 (468)
T ss_dssp EEEEES--CTTTT---THHHHHHHHHHHH
T ss_pred CeEEEC--CCCCC---HHHHHHHHHHHHH
Confidence 568999 99999 8888888877653
No 74
>1ji8_A Dissimilatory siroheme-sulfite reductase; orthogonal helical bundle, structural genomics, PSI, protein structure initiative; NMR {Pyrobaculum aerophilum} SCOP: d.203.1.1
Probab=24.52 E-value=66 Score=26.86 Aligned_cols=29 Identities=17% Similarity=0.394 Sum_probs=23.8
Q ss_pred hhHHHHHH-hhcCCCCCCHHHHHHHHHHHH
Q psy899 356 VDLIRLMS-LSHGHSELTEDMWKVALAMEK 384 (411)
Q Consensus 356 ~~~~rLla-lS~G~~~lt~e~W~~a~~LE~ 384 (411)
.++++.+| -..|=.+||.+||+.+.-|-.
T Consensus 32 eevA~~lA~~~egI~eLTe~HW~VI~flR~ 61 (111)
T 1ji8_A 32 EKVAEWLARELEGIQKMTEEHWKLVKYLRE 61 (111)
T ss_dssp HHHHHHHHHHHTCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCchhcCHHHHHHHHHHHH
Confidence 45667999 999998999999998876643
No 75
>3or1_C Sulfite reductase GAMA; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} SCOP: d.203.1.1 PDB: 3or2_C* 2v4j_C* 2xsj_C*
Probab=24.14 E-value=66 Score=26.51 Aligned_cols=30 Identities=13% Similarity=0.088 Sum_probs=24.6
Q ss_pred hhHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q psy899 356 VDLIRLMSLSHGHSELTEDMWKVALAMEKE 385 (411)
Q Consensus 356 ~~~~rLlalS~G~~~lt~e~W~~a~~LE~~ 385 (411)
.++++.+|-..|=.+||.+||+.+.-|-.-
T Consensus 27 ee~A~~lA~~egI~eLTe~HW~vI~flR~y 56 (105)
T 3or1_C 27 PEWVKYAKGSEGIGAGSADHQKIIDFLQDY 56 (105)
T ss_dssp HHHHHHHGGGGTCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCccCCHHHHHHHHHHHHH
Confidence 456679999999889999999998776543
No 76
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=23.98 E-value=18 Score=30.09 Aligned_cols=23 Identities=4% Similarity=-0.032 Sum_probs=18.0
Q ss_pred EEEEeecCCCCccchhHHHHHHHHHHhc
Q psy899 128 SLNIFHRDLATSCSDYAQMLYDILKLLV 155 (411)
Q Consensus 128 sLnL~g~~~P~~~~~~~s~L~~~l~~L~ 155 (411)
++.|+| -||++ |+.|...+..-+
T Consensus 45 ~vll~G--~~G~G---KT~la~~~~~~~ 67 (187)
T 2p65_A 45 NPILLG--DPGVG---KTAIVEGLAIKI 67 (187)
T ss_dssp EEEEES--CGGGC---HHHHHHHHHHHH
T ss_pred ceEEEC--CCCCC---HHHHHHHHHHHH
Confidence 568999 99999 888877665544
No 77
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=23.94 E-value=3.2e+02 Score=22.82 Aligned_cols=23 Identities=4% Similarity=-0.155 Sum_probs=17.9
Q ss_pred EEEEeecCCCCccchhHHHHHHHHHHhc
Q psy899 128 SLNIFHRDLATSCSDYAQMLYDILKLLV 155 (411)
Q Consensus 128 sLnL~g~~~P~~~~~~~s~L~~~l~~L~ 155 (411)
.+.|+| -||++ |+.|.+.+..-+
T Consensus 47 ~~ll~G--~~G~G---KT~l~~~~~~~~ 69 (250)
T 1njg_A 47 AYLFSG--TRGVG---KTSIARLLAKGL 69 (250)
T ss_dssp EEEEEC--STTSC---HHHHHHHHHHHH
T ss_pred EEEEEC--CCCCC---HHHHHHHHHHHh
Confidence 578999 99999 888877665544
No 78
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=20.57 E-value=28 Score=32.71 Aligned_cols=65 Identities=8% Similarity=0.059 Sum_probs=40.6
Q ss_pred EEEEeecCCCCccchhHHHHHHHHHHhccceEEeeccccccccCCcceeecCCCCcccccceeeeC---CcEEEEecCC
Q psy899 128 SLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQLSS---STYLILDEIH 203 (411)
Q Consensus 128 sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt~~~LN~~~l~P~kD~~~~~L~aG~LQLa~---gT~lvIDEt~ 203 (411)
.+.|.| -||++ |+.|.+.+...+.. .++.++...+.+.. -........+.++.+. .++++|||.+
T Consensus 51 ~vLL~G--p~GtG---KT~la~ala~~~~~-~~i~v~~~~l~~~~-----~g~~~~~~~~~f~~a~~~~p~il~iDEid 118 (301)
T 3cf0_A 51 GVLFYG--PPGCG---KTLLAKAIANECQA-NFISIKGPELLTMW-----FGESEANVREIFDKARQAAPCVLFFDELD 118 (301)
T ss_dssp EEEEEC--SSSSS---HHHHHHHHHHHTTC-EEEEECHHHHHHHH-----HTTCTTHHHHHHHHHHHTCSEEEEECSTT
T ss_pred eEEEEC--CCCcC---HHHHHHHHHHHhCC-CEEEEEhHHHHhhh-----cCchHHHHHHHHHHHHhcCCeEEEEEChH
Confidence 578999 99999 99999998887753 34444433332111 1112222345555543 3799999997
No 79
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=20.47 E-value=45 Score=30.61 Aligned_cols=85 Identities=13% Similarity=0.034 Sum_probs=44.1
Q ss_pred EEEEeecCCCCccchhHHHHHHHHHHhcc-c---eEEeeccccccccCCcceeecCCCCcccccceeeeCCcEEEEecCC
Q psy899 128 SLNIFHRDLATSCSDYAQMLYDILKLLVC-K---SHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQLSSSTYLILDEIH 203 (411)
Q Consensus 128 sLnL~g~~~P~~~~~~~s~L~~~l~~L~P-r---s~yl~lt~~~LN~~~l~P~kD~~~~~L~aG~LQLa~gT~lvIDEt~ 203 (411)
++.|.| -||++ |+.+.+.+..-+. . ..++.+......+... .++.-......+.+.-+++.+++|||.+
T Consensus 48 ~~ll~G--~~G~G---KT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~vliiDe~~ 120 (327)
T 1iqp_A 48 HLLFAG--PPGVG---KTTAALALARELFGENWRHNFLELNASDERGINV--IREKVKEFARTKPIGGASFKIIFLDEAD 120 (327)
T ss_dssp EEEEES--CTTSS---HHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHT--THHHHHHHHHSCCGGGCSCEEEEEETGG
T ss_pred eEEEEC--cCCCC---HHHHHHHHHHHhcCCcccCceEEeeccccCchHH--HHHHHHHHHhhCCcCCCCCeEEEEeCCC
Confidence 589999 99999 8888776655431 1 1122222111100000 0000000011233333568899999996
Q ss_pred CCCCccccccchHHHHHHHHHHc
Q psy899 204 LQPGQLNNTGCLNVKALSSVVNN 226 (411)
Q Consensus 204 L~eG~L~~~Gv~N~~AL~~li~~ 226 (411)
.+..+...+|..+++.
T Consensus 121 -------~l~~~~~~~L~~~le~ 136 (327)
T 1iqp_A 121 -------ALTQDAQQALRRTMEM 136 (327)
T ss_dssp -------GSCHHHHHHHHHHHHH
T ss_pred -------cCCHHHHHHHHHHHHh
Confidence 3333567788888886
No 80
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=20.06 E-value=1.3e+02 Score=25.13 Aligned_cols=67 Identities=15% Similarity=0.155 Sum_probs=39.3
Q ss_pred EEEEeecCCCCccchhHHHHHHHHHHhccc----eEEeeccccccccCCcceeecCCCCcccccceeeeCCcEEEEecCC
Q psy899 128 SLNIFHRDLATSCSDYAQMLYDILKLLVCK----SHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQLSSSTYLILDEIH 203 (411)
Q Consensus 128 sLnL~g~~~P~~~~~~~s~L~~~l~~L~Pr----s~yl~lt~~~LN~~~l~P~kD~~~~~L~aG~LQLa~gT~lvIDEt~ 203 (411)
.+-|.| -+|.+ |+.|.+.+...++. ..|++.. .+ ... .+ +.+-..++|||..
T Consensus 38 ~~~l~G--~~G~G---KTtL~~~i~~~~~~~g~~~~~~~~~--~~-----~~~------~~------~~~~~lLilDE~~ 93 (149)
T 2kjq_A 38 FIYVWG--EEGAG---KSHLLQAWVAQALEAGKNAAYIDAA--SM-----PLT------DA------AFEAEYLAVDQVE 93 (149)
T ss_dssp EEEEES--SSTTT---TCHHHHHHHHHHHTTTCCEEEEETT--TS-----CCC------GG------GGGCSEEEEESTT
T ss_pred EEEEEC--CCCCC---HHHHHHHHHHHHHhcCCcEEEEcHH--Hh-----hHH------HH------HhCCCEEEEeCcc
Confidence 356889 89999 88888888776642 3333321 11 111 11 2345789999986
Q ss_pred CCCCccccccchHHHHHHHHHH
Q psy899 204 LQPGQLNNTGCLNVKALSSVVN 225 (411)
Q Consensus 204 L~eG~L~~~Gv~N~~AL~~li~ 225 (411)
.- +. .....|.++++
T Consensus 94 ~~----~~---~~~~~l~~li~ 108 (149)
T 2kjq_A 94 KL----GN---EEQALLFSIFN 108 (149)
T ss_dssp CC----CS---HHHHHHHHHHH
T ss_pred cc----Ch---HHHHHHHHHHH
Confidence 32 11 22566666665
Done!