RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy899
         (411 letters)



>gnl|CDD|222265 pfam13615, Racemase_4, Putative alanine racemase.  This is a family
           of eukaryotic proteins which are putatively alanine
           racemase.
          Length = 102

 Score =  104 bits (262), Expect = 2e-27
 Identities = 49/102 (48%), Positives = 65/102 (63%), Gaps = 2/102 (1%)

Query: 91  LLTQLLMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDI 150
            LT  L GD +AA+YL+ +LLSRVY R + G  LGKFSLN+       S S  A+ L  +
Sbjct: 3   YLTNALGGDALAAEYLLLHLLSRVYSRTD-GLPLGKFSLNLTGCP-KESASTLAERLSSV 60

Query: 151 LKLLVCKSHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQLS 192
           L+ LV   HY  L +++LN   ++P+KDY TNRL SG+LQL 
Sbjct: 61  LQQLVPAVHYLPLTLENLNSLRLVPKKDYETNRLVSGVLQLP 102


>gnl|CDD|184274 PRK13722, PRK13722, lytic transglycosylase; Provisional.
          Length = 169

 Score = 29.3 bits (65), Expect = 2.5
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 14/85 (16%)

Query: 137 ATSCSDYAQMLY----DILKLLVCKSHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQLS 192
           AT C D A   Y    D+L+ +  K   + +N   +N     P   Y      SGL+Q+ 
Sbjct: 19  ATDCFDLAGRDYKIDPDLLRAISWKESRYRVNAIGIN-----PVTGYG-----SGLMQVD 68

Query: 193 SSTYLILDEIHLQPGQLNNTGCLNV 217
           S  +  L    ++P  L    C+N+
Sbjct: 69  SQHFNELARYGIKPEHLTTDPCMNI 93


>gnl|CDD|173948 cd08189, Fe-ADH5, Iron-containing alcohol dehydrogenases-like.
           Iron-containing alcohol dehydrogenase-like. Alcohol
           dehydrogenase catalyzes the reduction of acetaldehyde to
           alcohol with NADP as cofactor. Its activity requires
           iron ions. The protein structure represents a
           dehydroquinate synthase-like fold and belongs to the
           alcohol dehydrogenase-like superfamily. They are
           distinct from other alcohol dehydrogenases which
           contains different protein domain. Proteins of this
           family have not been characterized. Their specific
           function is unknown.
          Length = 374

 Score = 28.3 bits (64), Expect = 7.3
 Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 2/35 (5%)

Query: 292 KIRTYISWIQ--NRGFDIPENLTEIVQKDFVEMRK 324
               +I  ++  NR   IP  L  I   D   + K
Sbjct: 315 LAAAFIDAVRELNRTLGIPTTLEAIKASDIPAIAK 349


>gnl|CDD|179740 PRK04101, PRK04101, fosfomycin resistance protein FosB;
           Provisional.
          Length = 139

 Score = 27.2 bits (61), Expect = 9.1
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 6/48 (12%)

Query: 135 DLATSCSDYAQMLYDILKLLVC--KSHYFELNVK--SLNETTMIPRKD 178
           +L  S   Y ++L    KLLV   K+ YF+LN    +LNE   IPR +
Sbjct: 14  NLEKSIEFYEKVLGA--KLLVKGRKTAYFDLNGLWIALNEEKDIPRNE 59


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.320    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0774    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,490,100
Number of extensions: 1939752
Number of successful extensions: 1550
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1548
Number of HSP's successfully gapped: 16
Length of query: 411
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 312
Effective length of database: 6,546,556
Effective search space: 2042525472
Effective search space used: 2042525472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.8 bits)