RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy899
         (411 letters)



>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of
           mitochondrial p450 systems {Cow (Bos taurus) [TaxId:
           9913]}
          Length = 230

 Score = 28.3 bits (62), Expect = 1.4
 Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 4/75 (5%)

Query: 328 KTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALAMEKER- 386
            TD+     ++ L  L+   L          I+ +  S G   ++   W+   A E  R 
Sbjct: 150 MTDSFLTGQIL-LQDLKAGHLPSGPRPGSAFIKALLDSRGVWPVSFSDWEKLDAEEVSRG 208

Query: 387 --KSRPRLGLRKLEE 399
               +PR  L   +E
Sbjct: 209 QASGKPREKLLDPQE 223


>d1hcia1 a.7.1.1 (A:272-396) alpha-actinin {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 125

 Score = 26.7 bits (59), Expect = 3.1
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 288 ELLNKIRTYISWIQNRGFDIPENLTEIVQK--DFVEMRKENKKTDANDLHTLIVLARLEH 345
           ELL  IR  I W++NR     + +  + +K  DF + R+++K     +   L +      
Sbjct: 21  ELLEWIRRTIPWLENRTP--EKTMQAMQKKLEDFRDYRRKHKPPKVQEKCQLEINFNTLQ 78

Query: 346 LRLRP 350
            +LR 
Sbjct: 79  TKLRI 83


>d2fnoa2 c.47.1.5 (A:1-87) Hypothetical protein
          AGR_pAT_752p/Atu5508 {Agrobacterium tumefaciens [TaxId:
          358]}
          Length = 87

 Score = 25.5 bits (55), Expect = 4.3
 Identities = 6/43 (13%), Positives = 11/43 (25%)

Query: 1  MKRDMSSLDVQKQPPCPNGYHTRLAQWRHRVRYPVVSKFFGTW 43
          M+  M++ D+   P    G   R         +          
Sbjct: 1  MEDGMNTFDLYYWPVPFRGQLIRGILAHCGCSWDEHDVDAIEG 43


>d1xqma_ d.22.1.1 (A:) GFP-like non-fluorescent chromoprotein FP595
           {Anemonia sulcata [TaxId: 6108]}
          Length = 230

 Score = 26.2 bits (58), Expect = 6.1
 Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 7/57 (12%)

Query: 213 GCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVL------SLSDTKSMLPSDCHIK 263
           G L     +S+  +  + Y  +     FP D PV+          T+ +   D  ++
Sbjct: 98  GFLTAHQDTSLDGD-CLVYKVKILGNNFPADGPVMQNKVGRWEPGTEIVYEVDGVLR 153


>d1uisa_ d.22.1.1 (A:) Red fluorescent protein fp61 {Sea anemone
           (Entacmaea quadricolor) [TaxId: 6118]}
          Length = 227

 Score = 25.8 bits (57), Expect = 9.2
 Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 213 GCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSDTKSMLPS 258
           G   V   +S+ +   + Y  +     FP++  V+    TK   P+
Sbjct: 102 GVFTVMQDTSLEDG-CLVYHAKVTGVNFPSNGAVMQ-KKTKGWEPN 145


>d1moua_ d.22.1.1 (A:) Pocilloporin pigment Rtms5 {Coral (Montipora
           efflorescens) [TaxId: 105610]}
          Length = 221

 Score = 25.8 bits (57), Expect = 9.4
 Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 213 GCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSDTKSMLPS 258
               V   SS+  N   +Y  +F    FP + PV+    T+   P 
Sbjct: 99  AVCTVSNDSSIQGN-CFTYHVKFSGLNFPPNGPVMQ-KKTQGWEPH 142


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0573    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,503,210
Number of extensions: 68856
Number of successful extensions: 179
Number of sequences better than 10.0: 1
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 13
Length of query: 411
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 324
Effective length of database: 1,213,086
Effective search space: 393039864
Effective search space used: 393039864
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.9 bits)