BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8990
         (358 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1XM7|A Chain A, The Crystal Structure Of The Protein Of Unknown Function
           Aq665 From Aquifex Aeolicus
 pdb|1XM7|B Chain B, The Crystal Structure Of The Protein Of Unknown Function
           Aq665 From Aquifex Aeolicus
          Length = 195

 Score = 30.0 bits (66), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 21/124 (16%)

Query: 96  EDLRGFNPIFYFSQAVGAAIVVLVSIW-------TIHHRGGFTWRSNPGLEF--NWHPL- 145
           E++   NP   F    G  IV+L ++        T++H G FTW  N   E+   W  L 
Sbjct: 15  ENIINLNPEVRFK---GFEIVILTNLLKVLKPEDTLYHLGDFTWHFNDKNEYLRIWKALP 71

Query: 146 ---LMTIGLVSKDYASSGEGFLMNFIGLLVILYT----ILIGYLLHKPSYKRYP-RPEDV 197
              ++ +G   KD  S  E F   +    +I +     +L  Y    P  +RYP R E V
Sbjct: 72  GRKILVMGNHDKDKESLKEYFDEIYDFYKIIEHKGKRILLSHYPAKDPITERYPDRQEMV 131

Query: 198 NLIY 201
             IY
Sbjct: 132 REIY 135


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.140    0.446 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,669,213
Number of Sequences: 62578
Number of extensions: 477261
Number of successful extensions: 913
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 913
Number of HSP's gapped (non-prelim): 3
length of query: 358
length of database: 14,973,337
effective HSP length: 100
effective length of query: 258
effective length of database: 8,715,537
effective search space: 2248608546
effective search space used: 2248608546
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)