Query psy8990
Match_columns 358
No_of_seqs 157 out of 409
Neff 4.0
Searched_HMMs 46136
Date Sat Aug 17 00:52:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8990.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8990hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1619|consensus 100.0 7.5E-64 1.6E-68 468.4 18.4 225 93-358 8-233 (245)
2 PLN02810 carbon-monoxide oxyge 100.0 2.1E-62 4.6E-67 457.4 16.0 209 103-353 9-219 (231)
3 PLN02351 cytochromes b561 fami 100.0 2.4E-62 5.1E-67 459.8 15.8 216 99-358 7-228 (242)
4 PLN02680 carbon-monoxide oxyge 100.0 4.8E-60 1E-64 442.5 17.0 212 98-352 5-219 (232)
5 cd08764 Cyt_b561_CG1275_like N 100.0 2.7E-60 5.9E-65 439.8 10.5 202 116-358 1-203 (214)
6 cd08762 Cyt_b561_CYBASC3 Verte 100.0 1.6E-52 3.6E-57 379.0 12.0 171 107-319 3-175 (179)
7 cd08765 Cyt_b561_CYBRD1 Verteb 100.0 2.3E-47 5.1E-52 338.1 10.0 150 128-319 1-152 (153)
8 cd08766 Cyt_b561_ACYB-1_like P 100.0 1.3E-44 2.8E-49 317.5 9.3 142 134-317 2-143 (144)
9 cd08763 Cyt_b561_CYB561 Verteb 100.0 6.8E-44 1.5E-48 312.6 9.5 142 132-316 1-142 (143)
10 cd08554 Cyt_b561 Eukaryotic cy 100.0 5.6E-31 1.2E-35 222.7 7.5 131 139-310 1-131 (131)
11 cd08761 Cyt_b561_CYB561D2_like 100.0 5.1E-30 1.1E-34 229.1 9.3 137 136-313 17-158 (183)
12 PF03188 Cytochrom_B561: Eukar 100.0 7.9E-30 1.7E-34 215.3 7.9 135 142-317 1-137 (137)
13 smart00665 B561 Cytochrome b-5 99.9 3.6E-28 7.8E-33 205.8 7.0 128 142-310 1-129 (129)
14 cd08760 Cyt_b561_FRRS1_like Eu 99.8 4.7E-20 1E-24 165.3 9.4 132 136-313 32-163 (191)
15 cd08764 Cyt_b561_CG1275_like N 98.1 3.9E-07 8.4E-12 85.6 -1.3 94 104-200 93-211 (214)
16 PLN02351 cytochromes b561 fami 97.9 2.4E-06 5.1E-11 81.8 0.3 93 104-203 116-235 (242)
17 PF10348 DUF2427: Domain of un 97.4 0.00012 2.6E-09 61.9 3.6 86 136-272 14-101 (105)
18 KOG1619|consensus 97.3 2.9E-05 6.3E-10 74.4 -2.0 93 105-200 123-241 (245)
19 PF13301 DUF4079: Protein of u 96.5 0.0069 1.5E-07 55.6 6.5 89 211-311 78-170 (175)
20 KOG4293|consensus 96.4 0.00045 9.8E-09 70.0 -1.8 110 196-311 229-340 (403)
21 PLN02810 carbon-monoxide oxyge 96.3 0.00091 2E-08 64.0 -0.6 84 100-186 109-218 (231)
22 PF03188 Cytochrom_B561: Eukar 96.3 0.049 1.1E-06 46.1 10.0 123 215-345 1-125 (137)
23 smart00665 B561 Cytochrome b-5 96.1 0.037 8E-07 47.1 8.5 120 215-347 1-126 (129)
24 PF00033 Cytochrom_B_N: Cytoch 95.8 0.035 7.5E-07 48.2 7.2 102 211-312 7-127 (188)
25 cd08554 Cyt_b561 Eukaryotic cy 95.8 0.086 1.9E-06 44.8 9.3 122 214-346 3-127 (131)
26 cd08760 Cyt_b561_FRRS1_like Eu 95.4 0.089 1.9E-06 47.5 8.6 96 208-313 31-127 (191)
27 cd08761 Cyt_b561_CYB561D2_like 95.4 0.25 5.4E-06 44.6 11.4 131 212-347 20-152 (183)
28 PLN02680 carbon-monoxide oxyge 95.0 0.0043 9.4E-08 59.4 -1.1 85 100-187 109-220 (232)
29 cd08763 Cyt_b561_CYB561 Verteb 93.5 1.5 3.3E-05 39.1 11.7 123 212-345 6-131 (143)
30 PF13706 PepSY_TM_3: PepSY-ass 91.4 0.089 1.9E-06 36.8 1.0 32 246-277 2-33 (37)
31 PRK11513 cytochrome b561; Prov 86.1 4.3 9.2E-05 36.9 8.2 92 212-312 9-104 (176)
32 PF01292 Ni_hydr_CYTB: Prokary 84.2 9.9 0.00021 33.1 9.4 99 212-313 6-123 (182)
33 PF04238 DUF420: Protein of un 83.6 6.2 0.00013 35.0 7.9 87 214-313 6-103 (133)
34 PF13172 PepSY_TM_1: PepSY-ass 81.4 2.3 5.1E-05 28.9 3.4 28 284-311 2-29 (34)
35 cd08766 Cyt_b561_ACYB-1_like P 80.0 13 0.00029 33.3 8.7 94 211-312 6-99 (144)
36 TIGR02125 CytB-hydogenase Ni/F 76.9 14 0.00031 33.2 8.2 100 212-312 7-137 (211)
37 COG3038 CybB Cytochrome B561 [ 75.5 15 0.00032 34.4 7.9 94 211-311 11-108 (181)
38 PF00033 Cytochrom_B_N: Cytoch 74.2 11 0.00024 32.6 6.4 55 258-312 14-71 (188)
39 PF01292 Ni_hydr_CYTB: Prokary 72.0 12 0.00025 32.6 6.1 51 258-309 12-64 (182)
40 PF10348 DUF2427: Domain of un 71.3 42 0.0009 28.5 9.1 89 208-313 13-103 (105)
41 PF13706 PepSY_TM_3: PepSY-ass 71.2 5.6 0.00012 27.8 3.2 28 284-311 1-28 (37)
42 PF10856 DUF2678: Protein of u 67.9 9.1 0.0002 33.7 4.4 95 202-314 17-111 (118)
43 PF13703 PepSY_TM_2: PepSY-ass 67.1 15 0.00033 29.4 5.4 60 212-271 16-83 (88)
44 PF08507 COPI_assoc: COPI asso 64.7 95 0.002 26.9 11.0 108 213-347 4-111 (136)
45 cd08765 Cyt_b561_CYBRD1 Verteb 63.3 59 0.0013 29.6 8.9 97 212-313 11-107 (153)
46 COG3038 CybB Cytochrome B561 [ 61.8 13 0.00027 34.8 4.5 54 259-313 19-72 (181)
47 PF13703 PepSY_TM_2: PepSY-ass 60.2 32 0.00069 27.6 6.0 25 287-311 60-84 (88)
48 cd08762 Cyt_b561_CYBASC3 Verte 57.9 91 0.002 29.3 9.3 96 212-312 34-129 (179)
49 PRK05419 putative sulfite oxid 56.6 43 0.00094 31.5 7.1 58 244-307 36-93 (205)
50 PF01794 Ferric_reduct: Ferric 55.9 48 0.001 26.8 6.5 55 255-309 1-55 (125)
51 PF09990 DUF2231: Predicted me 55.4 55 0.0012 26.8 6.8 47 217-265 10-56 (104)
52 PF06197 DUF998: Protein of un 55.2 1.3E+02 0.0028 26.2 9.5 14 251-264 104-117 (184)
53 COG2322 Predicted membrane pro 53.0 49 0.0011 31.0 6.7 102 139-276 71-172 (177)
54 PTZ00127 cytochrome c oxidase 49.1 2.9E+02 0.0062 28.6 12.2 56 253-308 257-339 (403)
55 PRK10263 DNA translocase FtsK; 48.6 92 0.002 37.3 9.4 63 216-278 20-88 (1355)
56 PRK15006 thiosulfate reductase 47.9 2.7E+02 0.0059 27.0 11.5 55 213-269 74-128 (261)
57 COG2181 NarI Nitrate reductase 47.1 15 0.00033 35.6 2.5 77 214-305 123-201 (228)
58 PF03929 PepSY_TM: PepSY-assoc 46.5 22 0.00047 23.7 2.5 24 248-271 1-24 (27)
59 PF04238 DUF420: Protein of un 46.1 1.6E+02 0.0034 26.2 8.6 88 209-311 27-127 (133)
60 PF13172 PepSY_TM_1: PepSY-ass 45.1 17 0.00037 24.7 1.8 25 248-272 5-29 (34)
61 PRK03735 cytochrome b6; Provis 44.5 1E+02 0.0023 29.5 7.7 92 251-349 40-146 (223)
62 PF05940 NnrS: NnrS protein; 44.3 85 0.0018 31.8 7.5 50 99-152 7-56 (379)
63 PF02322 Cyto_ox_2: Cytochrome 40.6 1.5E+02 0.0032 29.7 8.4 62 247-311 154-215 (328)
64 PRK10171 hydrogenase 1 b-type 39.5 2.8E+02 0.0061 26.2 9.7 59 212-272 18-83 (235)
65 PF13301 DUF4079: Protein of u 38.2 3.1E+02 0.0067 25.4 9.5 84 247-341 78-163 (175)
66 PF04531 Phage_holin_1: Bacter 37.2 1.8E+02 0.0038 23.8 7.0 24 286-309 7-30 (84)
67 PF10067 DUF2306: Predicted me 35.8 76 0.0017 26.4 4.8 28 284-311 2-29 (103)
68 PRK11513 cytochrome b561; Prov 34.0 68 0.0015 29.1 4.5 51 259-312 16-66 (176)
69 TIGR01583 formate-DH-gamm form 34.0 2E+02 0.0044 26.3 7.7 100 212-312 9-129 (204)
70 PRK09928 choline transport pro 33.8 4.9E+02 0.011 29.2 11.7 58 213-271 144-208 (679)
71 CHL00070 petB cytochrome b6 33.7 2.9E+02 0.0063 26.4 8.8 90 253-349 34-138 (215)
72 COG2322 Predicted membrane pro 33.4 2E+02 0.0043 27.2 7.4 120 213-345 46-169 (177)
73 PTZ00127 cytochrome c oxidase 32.6 5.6E+02 0.012 26.6 11.3 48 252-304 349-396 (403)
74 PF10856 DUF2678: Protein of u 32.2 1.9E+02 0.0041 25.7 6.7 83 250-347 29-111 (118)
75 COG4244 Predicted membrane pro 27.0 1.4E+02 0.0031 27.7 5.3 59 208-272 82-142 (160)
76 PF02009 Rifin_STEVOR: Rifin/s 26.1 36 0.00078 34.1 1.4 47 309-357 238-284 (299)
77 PF07857 DUF1632: CEO family ( 25.4 2.7E+02 0.0058 27.3 7.2 58 295-354 82-139 (254)
78 TIGR03144 cytochr_II_ccsB cyto 24.9 4.5E+02 0.0097 24.9 8.5 23 214-236 27-49 (243)
79 cd01661 cbb3_Oxidase_I Cytochr 24.4 1.5E+02 0.0033 31.4 5.7 33 247-279 85-117 (493)
80 cd00284 Cytochrome_b_N Cytochr 24.3 4.7E+02 0.01 24.6 8.4 60 254-313 24-97 (200)
81 COG3104 PTR2 Dipeptide/tripept 24.2 3.3E+02 0.0072 29.4 8.2 38 101-152 157-194 (498)
82 PF02628 COX15-CtaA: Cytochrom 23.5 2.7E+02 0.0058 27.0 6.8 75 213-301 226-300 (302)
83 PLN02631 ferric-chelate reduct 23.2 6.2E+02 0.013 28.4 10.3 93 215-308 110-209 (699)
84 PF14358 DUF4405: Domain of un 23.1 1.3E+02 0.0027 22.7 3.6 49 256-304 6-58 (64)
85 PF06570 DUF1129: Protein of u 22.8 3.1E+02 0.0066 25.3 6.8 47 213-273 81-127 (206)
86 PRK10179 formate dehydrogenase 22.7 6.4E+02 0.014 23.6 9.9 99 212-311 14-133 (217)
87 PF01578 Cytochrom_C_asm: Cyto 22.4 5.9E+02 0.013 23.1 9.1 22 218-239 7-28 (214)
88 PF14358 DUF4405: Domain of un 21.1 2.5E+02 0.0054 21.1 4.9 55 213-267 3-60 (64)
89 PF12650 DUF3784: Domain of un 20.7 4.6E+02 0.01 21.2 8.3 27 286-312 38-64 (97)
90 PF10951 DUF2776: Protein of u 20.6 1.8E+02 0.004 29.8 5.1 119 212-344 150-270 (347)
91 PLN02292 ferric-chelate reduct 20.4 1.5E+02 0.0032 33.2 4.8 22 285-306 203-224 (702)
92 PF01794 Ferric_reduct: Ferric 20.4 2.9E+02 0.0062 22.2 5.5 65 245-309 30-97 (125)
No 1
>KOG1619|consensus
Probab=100.00 E-value=7.5e-64 Score=468.37 Aligned_cols=225 Identities=44% Similarity=0.787 Sum_probs=220.1
Q ss_pred ccccccCCchHHHHHHHHHHHHHHHHHHhhcceeecceeecCCCCcccchhhHHHhhhhccccccCCCccchhhhhceee
Q psy8990 93 HQVEDLRGFNPIFYFSQAVGAAIVVLVSIWTIHHRGGFTWRSNPGLEFNWHPLLMTIGLVSKDYASSGEGFLMNFIGLLV 172 (358)
Q Consensus 93 ~~~~~~~~f~~~~~~a~~lgl~~vvlv~~W~~~~rgGf~w~~~~~~~FnwHPlLMtlGfv~~~~~~~~~~~~~~~~g~~~ 172 (358)
..+++.++|+.++.++|++|+++++++++|+.+||+|++|+++++++|||||+||++||+
T Consensus 8 ~~~~~~~~f~~~~~~s~l~G~i~v~lvl~W~~~yr~Glaw~~~~~~~fnlHP~lMviGfI-------------------- 67 (245)
T KOG1619|consen 8 KAASSLGRFLIIVVVSHLLGFITVVLVLYWVNTYRGGLAWSSSPNKEFNLHPVLMVIGFI-------------------- 67 (245)
T ss_pred cccCCcccchHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCCcchhcCcchHHHHHHHH--------------------
Confidence 445888899999999999999999999999999999999998889999999999999999
Q ss_pred eeeehhhhhhccCCCCCCCCCCCCceeeEeecccCCCCcchhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCcchhh
Q psy8990 173 ILYTILIGYLLHKPSYKRYPRPEDVNLIYRSLRNYGKKGLKLSHACLHGVILILVLFGLVAAFDSHNFAVPPKPNLYTLH 252 (358)
Q Consensus 173 ~l~g~~~~~~~~~~~~~~~~~~~eaiL~yr~~~~~~k~~~K~iH~iLq~lAlilalIGlvAIf~nhn~~~~gipHFySLH 252 (358)
+++| ||+|+||.+|+.+|+.+|.+|..+|.+|++++++|++++|++|| +++++||||+|
T Consensus 68 ~l~G-------------------eAiL~YR~~r~~~k~~~KliH~~LH~~Alvl~i~gl~avf~~hn--~~~i~NfySLH 126 (245)
T KOG1619|consen 68 YLQG-------------------EAILIYRVFRYTSKKVSKLIHLGLHIIALVLAIIGLCAVFDSHN--LVGIANFYSLH 126 (245)
T ss_pred Hhcc-------------------ceeeeeehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcCccceeeHH
Confidence 9999 99999999999999999999999999999999999999999999 89999999999
Q ss_pred HHHHHHHHHHHHHhhhhheeehcccCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC-CchhHHH
Q psy8990 253 SWIGLLTVILYCSQYVVGFISFMYPGIADALRGVLMPYHVFCGVSIFIMSSCAVLTGLLEKAIFTLSKDYAS-SGEGFLM 331 (358)
Q Consensus 253 SWLGLiTviLf~lQ~l~Gf~sFL~P~~~~~~Ra~l~P~H~f~Gl~ifvLaiaT~llGL~eK~~f~~~~~y~~-~~e~~l~ 331 (358)
||+|++++++|.+||++||++|++|+.+++.|++++|||+++|+.+|+++++||++|+.||.+|.+.++|++ ++|++++
T Consensus 127 SWlGl~~v~ly~~Q~v~GF~tfl~pg~~~~~Rs~lmP~H~~~Gl~~f~lai~ta~~Gl~ek~~f~~~~~~s~~~~e~~l~ 206 (245)
T KOG1619|consen 127 SWLGLCVVILYSLQWVFGFFTFLFPGSPESYRSRLMPWHVFLGLAIFILAIVTALTGLLEKLTFLCFGDLSTKNPEGYLV 206 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999889999 9999999
Q ss_pred HHHHHHHHHHHHhheeeecCCCCCCCC
Q psy8990 332 NFIGLLVILYTILIGYLLHKPSYKSTH 358 (358)
Q Consensus 332 N~lGl~li~~g~lV~~~~~~~~~kr~~ 358 (358)
|++|+.+++||++|.+++++|+||||+
T Consensus 207 n~~gv~~il~g~~Vl~~v~~~~~kr~s 233 (245)
T KOG1619|consen 207 NFLGVFIILFGVLVLTLVTPPPWKRPS 233 (245)
T ss_pred HHHHHHHHHHHHHheEEEecCCCCCCC
Confidence 999999999999999999999999986
No 2
>PLN02810 carbon-monoxide oxygenase
Probab=100.00 E-value=2.1e-62 Score=457.40 Aligned_cols=209 Identities=37% Similarity=0.689 Sum_probs=200.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcceeecceeecC-CCCcccchhhHHHhhhhccccccCCCccchhhhhceeeeeeehhhhh
Q psy8990 103 PIFYFSQAVGAAIVVLVSIWTIHHRGGFTWRS-NPGLEFNWHPLLMTIGLVSKDYASSGEGFLMNFIGLLVILYTILIGY 181 (358)
Q Consensus 103 ~~~~~a~~lgl~~vvlv~~W~~~~rgGf~w~~-~~~~~FnwHPlLMtlGfv~~~~~~~~~~~~~~~~g~~~~l~g~~~~~ 181 (358)
|++.++|++|+++++++++|+++|||||+|++ |+.++|||||+||++||+ +++|
T Consensus 9 ~~~~~a~~lg~~~~vlvl~W~~~~rgG~aw~~~~~~~~FN~HPvlMv~Gfi--------------------~l~g----- 63 (231)
T PLN02810 9 PLTFVAHALAVIGAIMVLVWSIYYRGGLAWEATNKNLIFNLHPVLMLIGLI--------------------IIGG----- 63 (231)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCceeeehHHHHHHHHH--------------------HHhh-----
Confidence 77899999999999999999999999999984 467799999999999999 9999
Q ss_pred hccCCCCCCCCCCCCceeeEeecccCCCCcchhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCcchhhHHHHHHHHH
Q psy8990 182 LLHKPSYKRYPRPEDVNLIYRSLRNYGKKGLKLSHACLHGVILILVLFGLVAAFDSHNFAVPPKPNLYTLHSWIGLLTVI 261 (358)
Q Consensus 182 ~~~~~~~~~~~~~~eaiL~yr~~~~~~k~~~K~iH~iLq~lAlilalIGlvAIf~nhn~~~~gipHFySLHSWLGLiTvi 261 (358)
||+|+||.+|. +|+.+|++|+++|++|++|+++|++|+|+||| ++++|||||||||+|++|++
T Consensus 64 --------------eAIL~Yr~~~~-~k~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn--~~~i~nlySLHSWlGl~tv~ 126 (231)
T PLN02810 64 --------------EAIMSYKSLPL-KKEVKKLIHLVLHAIALILGIFGICAAFKNHN--ESGIANLYSLHSWLGIGIIS 126 (231)
T ss_pred --------------HHHHHhhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccCCCceeeHHHHHHHHHHH
Confidence 99999999986 57889999999999999999999999999999 89999999999999999999
Q ss_pred HHHHhhhhheeehcccCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC-CchhHHHHHHHHHHHH
Q psy8990 262 LYCSQYVVGFISFMYPGIADALRGVLMPYHVFCGVSIFIMSSCAVLTGLLEKAIFTLSKDYAS-SGEGFLMNFIGLLVIL 340 (358)
Q Consensus 262 Lf~lQ~l~Gf~sFL~P~~~~~~Ra~l~P~H~f~Gl~ifvLaiaT~llGL~eK~~f~~~~~y~~-~~e~~l~N~lGl~li~ 340 (358)
+|.+||+.||++|++|+.+++.|++++|||+++|+++|+++++|+++|++||.+|.++++|++ ++|++++|++|+++++
T Consensus 127 Lf~lQw~~Gf~~Fl~P~~~~~~R~~~lP~Hv~~Gl~if~LAiata~lGi~EKl~Fl~~~~~~~~~~Ea~lvN~~Glliv~ 206 (231)
T PLN02810 127 LYGIQWIYGFIVFFFPGGSTNLRSGSLPWHVLFGLFVYILAVGNAALGFLEKLTFLESGGLDKYGSEALLVNFTAIITIL 206 (231)
T ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCchhhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988788999 9999999999999999
Q ss_pred HHHhheeeecCCC
Q psy8990 341 YTILIGYLLHKPS 353 (358)
Q Consensus 341 ~g~lV~~~~~~~~ 353 (358)
||++|.|++++++
T Consensus 207 fg~~V~~~~~~~~ 219 (231)
T PLN02810 207 YGAFVVLTALAQS 219 (231)
T ss_pred HHHHHHHhhccCC
Confidence 9999999988764
No 3
>PLN02351 cytochromes b561 family protein
Probab=100.00 E-value=2.4e-62 Score=459.85 Aligned_cols=216 Identities=31% Similarity=0.553 Sum_probs=201.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhhcceeecceeecCC--CCccc-chhhHHHhhhhccccccCCCccchhhhhceeeeee
Q psy8990 99 RGFNPIFYFSQAVGAAIVVLVSIWTIHHRGGFTWRSN--PGLEF-NWHPLLMTIGLVSKDYASSGEGFLMNFIGLLVILY 175 (358)
Q Consensus 99 ~~f~~~~~~a~~lgl~~vvlv~~W~~~~rgGf~w~~~--~~~~F-nwHPlLMtlGfv~~~~~~~~~~~~~~~~g~~~~l~ 175 (358)
..|.+++.++|++|+++++++++|+++|||||+|+++ +.++| ||||+||++||+ +++
T Consensus 7 ~~~~~~~~~a~~lGl~~~~lvl~W~~~~rgG~aw~~~~~~~~iffn~HP~lMviGfi--------------------~L~ 66 (242)
T PLN02351 7 SSLLPLLLFARLSGLVVAVLVLYWALFFKSSFLPQSTSQEDLVYAVLHPLLMVIGFI--------------------LIS 66 (242)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHhCCccccCCCCCccceeecccHHHHHHHHH--------------------HHH
Confidence 4577999999999999999999999999999999853 44577 799999999999 999
Q ss_pred ehhhhhhccCCCCCCCCCCCCceeeEeecccCCCCcchhHHHHHHHHHHHHHHHHHhhhhhccCCCCC-CCCCcchhhHH
Q psy8990 176 TILIGYLLHKPSYKRYPRPEDVNLIYRSLRNYGKKGLKLSHACLHGVILILVLFGLVAAFDSHNFAVP-PKPNLYTLHSW 254 (358)
Q Consensus 176 g~~~~~~~~~~~~~~~~~~~eaiL~yr~~~~~~k~~~K~iH~iLq~lAlilalIGlvAIf~nhn~~~~-gipHFySLHSW 254 (358)
| ||||+||.+|. +|+.+|.+|+++|.+|++|+++|++| ++|+ +. .+|||||+|||
T Consensus 67 g-------------------eAILvYR~~~~-~~k~~K~lH~~Lh~~Ali~~vvGl~a--~fh~--~~~~i~nlySLHSW 122 (242)
T PLN02351 67 G-------------------EAILVHRWLPG-SRKTKKSVHLWLQGLALASGVFGIWT--KFHG--QDGIVANFYSLHSW 122 (242)
T ss_pred H-------------------HHHHHhhcccc-cchHHHHHHHHHHHHHHHHHHHHHHH--HHhc--ccCCccchhHHHHH
Confidence 9 99999999986 56569999999999999999999999 6666 44 47999999999
Q ss_pred HHHHHHHHHHHhhhhheeehcccCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCCC-CchhHHHH
Q psy8990 255 IGLLTVILYCSQYVVGFISFMYPGIADALRGVLMPYHVFCGVSIFIMSSCAVLTGLLEKAIFTLS-KDYAS-SGEGFLMN 332 (358)
Q Consensus 255 LGLiTviLf~lQ~l~Gf~sFL~P~~~~~~Ra~l~P~H~f~Gl~ifvLaiaT~llGL~eK~~f~~~-~~y~~-~~e~~l~N 332 (358)
+|++|+++|.+||++||++|++|+.++..|++++|+|+++|+++|+|+++|+++|+.||.+|.++ ++|++ ++|++++|
T Consensus 123 lGl~tv~Lf~lQwv~Gf~~F~~P~~~~~~Ra~~~P~Hv~~Gl~if~LaiaTa~lGl~EKl~F~~~~~~y~~~~~Ea~lvN 202 (242)
T PLN02351 123 MGLICVSLFGAQWLTGFMSFWHRGEMRTTRTTVLPWHVFLGLYTYGLAVATAETGLLEKLTFLQTKRNVSKHGSESMVVN 202 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccCCchhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999985 48999 99999999
Q ss_pred HHHHHHHHHHHhheeeecCCCCCCCC
Q psy8990 333 FIGLLVILYTILIGYLLHKPSYKSTH 358 (358)
Q Consensus 333 ~lGl~li~~g~lV~~~~~~~~~kr~~ 358 (358)
++|+++++||++|+|++++|+||||+
T Consensus 203 ~~Glliv~fG~~Vv~~~~~p~~kr~~ 228 (242)
T PLN02351 203 GLGLGLALLSGIVILAAVLPKYQSHS 228 (242)
T ss_pred HHHHHHHHHHHHHHHhhcCccccCCC
Confidence 99999999999999999999999985
No 4
>PLN02680 carbon-monoxide oxygenase
Probab=100.00 E-value=4.8e-60 Score=442.50 Aligned_cols=212 Identities=36% Similarity=0.643 Sum_probs=200.5
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhcceeecceeecC-CCCcccchhhHHHhhhhccccccCCCccchhhhhceeeeeee
Q psy8990 98 LRGFNPIFYFSQAVGAAIVVLVSIWTIHHRGGFTWRS-NPGLEFNWHPLLMTIGLVSKDYASSGEGFLMNFIGLLVILYT 176 (358)
Q Consensus 98 ~~~f~~~~~~a~~lgl~~vvlv~~W~~~~rgGf~w~~-~~~~~FnwHPlLMtlGfv~~~~~~~~~~~~~~~~g~~~~l~g 176 (358)
.+.|..++ ++|++|+++++++++|+++|||||+|++ |+.++|||||+||++||+ +++|
T Consensus 5 ~~~~~~~~-~~~~~g~~~~~lv~~W~~~~rgG~aw~~~~~~~~Fn~HPlLM~~Gfi--------------------~l~g 63 (232)
T PLN02680 5 VIRFPIFM-LVRLLGVIVAALVLTWTVHYRGGLALSSDNKDLIFNVHPVLMVIGLV--------------------LLNG 63 (232)
T ss_pred cccccHHH-HHHHHHHHHHHHHHHHHHHhCccccccCCCCcceEechHHHHHHHHH--------------------HHHH
Confidence 34565555 9999999999999999999999999986 466799999999999999 9999
Q ss_pred hhhhhhccCCCCCCCCCCCCceeeEeecccCCCCcchhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCcchhhHHHH
Q psy8990 177 ILIGYLLHKPSYKRYPRPEDVNLIYRSLRNYGKKGLKLSHACLHGVILILVLFGLVAAFDSHNFAVPPKPNLYTLHSWIG 256 (358)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~eaiL~yr~~~~~~k~~~K~iH~iLq~lAlilalIGlvAIf~nhn~~~~gipHFySLHSWLG 256 (358)
||+|+||..|. +|+.+|++|+++|.+|++|+++|++++|++|| ++++|||||+|||+|
T Consensus 64 -------------------eAIL~yr~~~~-~k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn--~~~~~nfySlHSWlG 121 (232)
T PLN02680 64 -------------------EAMLAYKTVPG-TKNLKKLVHLTLQFLAFCLSLIGVWAALKFHN--EKGIDNFYSLHSWLG 121 (232)
T ss_pred -------------------HHHhccccccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccCccccccHHHHHH
Confidence 99999999986 68889999999999999999999999999999 889999999999999
Q ss_pred HHHHHHHHHhhhhheeehcccCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCCC-CchhHHHHHH
Q psy8990 257 LLTVILYCSQYVVGFISFMYPGIADALRGVLMPYHVFCGVSIFIMSSCAVLTGLLEKAIFTLSK-DYAS-SGEGFLMNFI 334 (358)
Q Consensus 257 LiTviLf~lQ~l~Gf~sFL~P~~~~~~Ra~l~P~H~f~Gl~ifvLaiaT~llGL~eK~~f~~~~-~y~~-~~e~~l~N~l 334 (358)
++|+++|.+||++||.+|++|+.+++.|++++|+|+++|+++|+++++|+++|+.||.+|.+++ +|++ ++|++++|++
T Consensus 122 l~t~iL~~lQ~~~Gf~~f~~P~~~~~~R~~~~p~H~~~G~~if~LaiaT~~lG~~Ek~~f~~~~~~~~~~~~e~~lvN~~ 201 (232)
T PLN02680 122 LACLFLFSLQWAAGFVTFWYPGGSRNSRASLLPWHVFFGIYIYALAVATATTGILEKATFLQSNKVISRYSTEAMLVNSL 201 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCCCCchhhhHhHH
Confidence 9999999999999999999999999999999999999999999999999999999999998754 7888 9999999999
Q ss_pred HHHHHHHHHhheeeecCC
Q psy8990 335 GLLVILYTILIGYLLHKP 352 (358)
Q Consensus 335 Gl~li~~g~lV~~~~~~~ 352 (358)
|+++++||++|.|.++.|
T Consensus 202 gl~~~~fg~~V~~~v~~p 219 (232)
T PLN02680 202 GILIVVLGGFVILAIVTP 219 (232)
T ss_pred HHHHHHHHHHHHHhhccc
Confidence 999999999999999997
No 5
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=100.00 E-value=2.7e-60 Score=439.83 Aligned_cols=202 Identities=51% Similarity=1.004 Sum_probs=192.0
Q ss_pred HHHHHhhcceeecceeecCCCCcccchhhHHHhhhhccccccCCCccchhhhhceeeeeeehhhhhhccCCCCCCCCCCC
Q psy8990 116 VVLVSIWTIHHRGGFTWRSNPGLEFNWHPLLMTIGLVSKDYASSGEGFLMNFIGLLVILYTILIGYLLHKPSYKRYPRPE 195 (358)
Q Consensus 116 vvlv~~W~~~~rgGf~w~~~~~~~FnwHPlLMtlGfv~~~~~~~~~~~~~~~~g~~~~l~g~~~~~~~~~~~~~~~~~~~ 195 (358)
++++++|+++|||||+|++ +.++|||||+||++||+ +++|
T Consensus 1 v~l~~~W~~~~rgG~~~~~-~~~~Fn~HP~lM~~Gfi--------------------~l~g------------------- 40 (214)
T cd08764 1 VVLVGIWLGKFRGGFSWTG-PGLQFNWHPLLMVLGLI--------------------FLYG------------------- 40 (214)
T ss_pred CEEEeehHHHcCCccccCC-CCceEeecHHHHHHHHH--------------------HHHH-------------------
Confidence 3578999999999999984 77889999999999999 9999
Q ss_pred CceeeEeecccCCCCcchhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCcchhhHHHHHHHHHHHHHhhhhheeehc
Q psy8990 196 DVNLIYRSLRNYGKKGLKLSHACLHGVILILVLFGLVAAFDSHNFAVPPKPNLYTLHSWIGLLTVILYCSQYVVGFISFM 275 (358)
Q Consensus 196 eaiL~yr~~~~~~k~~~K~iH~iLq~lAlilalIGlvAIf~nhn~~~~gipHFySLHSWLGLiTviLf~lQ~l~Gf~sFL 275 (358)
||+|+||.+|..+|+.+|.+|+++|++|++|+++|++++|++||.++++++||||+|||+|++|+++|.+||+.|+++|+
T Consensus 41 eAiLvyr~~~~~~k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlHSwlGl~t~~L~~lQ~~~Gf~~fl 120 (214)
T cd08764 41 NSILVYRVFRNTRKKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLHSWLGLTAVILFSLQWVGGFVSFL 120 (214)
T ss_pred HHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888999999999999999999999999999444499999999999999999999999999999999
Q ss_pred ccCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC-CchhHHHHHHHHHHHHHHHhheeeecCCCC
Q psy8990 276 YPGIADALRGVLMPYHVFCGVSIFIMSSCAVLTGLLEKAIFTLSKDYAS-SGEGFLMNFIGLLVILYTILIGYLLHKPSY 354 (358)
Q Consensus 276 ~P~~~~~~Ra~l~P~H~f~Gl~ifvLaiaT~llGL~eK~~f~~~~~y~~-~~e~~l~N~lGl~li~~g~lV~~~~~~~~~ 354 (358)
+|+.+++.|++++|+|+++|+++|+++++|+++|+.||.+|.++ +|++ ++|++++|++|+++++||++|.|++++|+|
T Consensus 121 ~P~~~~~~r~~~~p~H~~~Gl~~fvLaiaT~~lGl~ek~~f~~~-~~~~~~~e~~l~N~~gl~~~~fg~~V~~~~~~~~~ 199 (214)
T cd08764 121 FPGLPETLRAAYLPLHVFFGLFIFVLAVATALLGITEKAFFSLN-KYSNLPAEGVLGNFIGIVLVIFGGLVVYLVTEPDY 199 (214)
T ss_pred hcccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccccCChhHHHHHHHHHHHHHHHHHHHHhccCccc
Confidence 99999999999999999999999999999999999999999986 5988 999999999999999999999999999999
Q ss_pred CCCC
Q psy8990 355 KSTH 358 (358)
Q Consensus 355 kr~~ 358 (358)
|||+
T Consensus 200 kr~~ 203 (214)
T cd08764 200 KRIE 203 (214)
T ss_pred CCCC
Confidence 9974
No 6
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=100.00 E-value=1.6e-52 Score=379.04 Aligned_cols=171 Identities=43% Similarity=0.762 Sum_probs=162.3
Q ss_pred HHHHHHHHHHHHHHhhcceeecceeecCCCCcccchhhHHHhhhhccccccCCCccchhhhhceeeeeeehhhhhhccCC
Q psy8990 107 FSQAVGAAIVVLVSIWTIHHRGGFTWRSNPGLEFNWHPLLMTIGLVSKDYASSGEGFLMNFIGLLVILYTILIGYLLHKP 186 (358)
Q Consensus 107 ~a~~lgl~~vvlv~~W~~~~rgGf~w~~~~~~~FnwHPlLMtlGfv~~~~~~~~~~~~~~~~g~~~~l~g~~~~~~~~~~ 186 (358)
+..++|+++++++++|+++|||||+|++++ ++|||||+||++||+ +++|
T Consensus 3 ~~~~lg~~~~~lv~~W~~~~rgG~~w~~~~-~~Fn~HP~lMv~Gfi--------------------~L~g---------- 51 (179)
T cd08762 3 LLGILGIACVVLVVHWNQMWRGGFAWDGSS-KNFNWHPVLMVTGMV--------------------VLYG---------- 51 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccCCCCCC-CceeehHHHHHHHHH--------------------HHHH----------
Confidence 456799999999999999999999998544 489999999999999 9999
Q ss_pred CCCCCCCCCCceeeEeeccc--CCCCcchhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCcchhhHHHHHHHHHHHH
Q psy8990 187 SYKRYPRPEDVNLIYRSLRN--YGKKGLKLSHACLHGVILILVLFGLVAAFDSHNFAVPPKPNLYTLHSWIGLLTVILYC 264 (358)
Q Consensus 187 ~~~~~~~~~eaiL~yr~~~~--~~k~~~K~iH~iLq~lAlilalIGlvAIf~nhn~~~~gipHFySLHSWLGLiTviLf~ 264 (358)
||+|+||..|. .+|+.+|++|+++|.+|++|+++|++|+|+||| ++++|||||+|||+|++|+++|.
T Consensus 52 ---------eAiL~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn--~~~~~nlySlHSWlGl~t~~Lf~ 120 (179)
T cd08762 52 ---------NAALVYRIPLTWGGPKLPWKLLHAGLLLLAFILTVIGLCAVFNFHN--VHHTANLYSLHSWVGICTVALFT 120 (179)
T ss_pred ---------HHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccCccchhhHHHHHHHHHHHHHH
Confidence 99999998775 478889999999999999999999999999999 88999999999999999999999
Q ss_pred HhhhhheeehcccCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy8990 265 SQYVVGFISFMYPGIADALRGVLMPYHVFCGVSIFIMSSCAVLTGLLEKAIFTLS 319 (358)
Q Consensus 265 lQ~l~Gf~sFL~P~~~~~~Ra~l~P~H~f~Gl~ifvLaiaT~llGL~eK~~f~~~ 319 (358)
+||++|+++|++|+.+++.|++++|+|+++|+++|+++++|+++|+.||.+|.++
T Consensus 121 lQ~~~Gf~~f~~p~~~~~~ra~~~p~H~~~G~~if~Laiat~~lGl~ek~~f~~~ 175 (179)
T cd08762 121 CQWVMGFTSFLLPWAPMWLRALVKPIHVFFGAMILVLSIASCISGINEKLFFSLK 175 (179)
T ss_pred HHHHHHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999874
No 7
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=100.00 E-value=2.3e-47 Score=338.15 Aligned_cols=150 Identities=41% Similarity=0.717 Sum_probs=141.7
Q ss_pred cceeecCCCCcccchhhHHHhhhhccccccCCCccchhhhhceeeeeeehhhhhhccCCCCCCCCCCCCceeeEeeccc-
Q psy8990 128 GGFTWRSNPGLEFNWHPLLMTIGLVSKDYASSGEGFLMNFIGLLVILYTILIGYLLHKPSYKRYPRPEDVNLIYRSLRN- 206 (358)
Q Consensus 128 gGf~w~~~~~~~FnwHPlLMtlGfv~~~~~~~~~~~~~~~~g~~~~l~g~~~~~~~~~~~~~~~~~~~eaiL~yr~~~~- 206 (358)
|||+|| ++.++|||||+||++||+ +++| ||+|+||..|.
T Consensus 1 ~g~~w~-~~~~~Fn~HPlLm~~Gfi--------------------~l~g-------------------eAiL~yr~~~~~ 40 (153)
T cd08765 1 EGLGWD-GGAAEFNWHPVLMVIGFI--------------------FIQG-------------------IAIIVYRLPWTW 40 (153)
T ss_pred CCCCCC-CCCCeeechHHHHHHHHH--------------------HHHH-------------------HHHHHhcccccc
Confidence 699997 445699999999999999 9999 99999997654
Q ss_pred -CCCCcchhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCcchhhHHHHHHHHHHHHHhhhhheeehcccCcchhhhh
Q psy8990 207 -YGKKGLKLSHACLHGVILILVLFGLVAAFDSHNFAVPPKPNLYTLHSWIGLLTVILYCSQYVVGFISFMYPGIADALRG 285 (358)
Q Consensus 207 -~~k~~~K~iH~iLq~lAlilalIGlvAIf~nhn~~~~gipHFySLHSWLGLiTviLf~lQ~l~Gf~sFL~P~~~~~~Ra 285 (358)
.+|+.+|++|+++|++|++|+++|+++||+||| ++++|||||+|||+|++|+++|.+||++|+.+|++|+.+.+.|+
T Consensus 41 ~~~k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn--~~~~~~fySlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~~~~~~r~ 118 (153)
T cd08765 41 KCSKLLMKLIHAGLHILAFILAIISVVAVFVFHN--AKNIPNMYSLHSWVGLAAVILYPLQLVLGISVYLLPVAPVRLRA 118 (153)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcc--ccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHH
Confidence 458899999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy8990 286 VLMPYHVFCGVSIFIMSSCAVLTGLLEKAIFTLS 319 (358)
Q Consensus 286 ~l~P~H~f~Gl~ifvLaiaT~llGL~eK~~f~~~ 319 (358)
+++|||+++|+++|+|+++|+++|+.||.+|.+.
T Consensus 119 ~~~p~H~~~G~~i~~Lai~t~~lG~~ek~~f~~~ 152 (153)
T cd08765 119 ALMPLHVYSGLFIFGTVIATALMGITEKLIFSLK 152 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999763
No 8
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=100.00 E-value=1.3e-44 Score=317.49 Aligned_cols=142 Identities=42% Similarity=0.761 Sum_probs=136.7
Q ss_pred CCCCcccchhhHHHhhhhccccccCCCccchhhhhceeeeeeehhhhhhccCCCCCCCCCCCCceeeEeecccCCCCcch
Q psy8990 134 SNPGLEFNWHPLLMTIGLVSKDYASSGEGFLMNFIGLLVILYTILIGYLLHKPSYKRYPRPEDVNLIYRSLRNYGKKGLK 213 (358)
Q Consensus 134 ~~~~~~FnwHPlLMtlGfv~~~~~~~~~~~~~~~~g~~~~l~g~~~~~~~~~~~~~~~~~~~eaiL~yr~~~~~~k~~~K 213 (358)
+|+.++|||||+||++||+ ++++ ||+|+||..|. +|+.+|
T Consensus 2 ~~~~~~Fn~HP~lM~~gfi--------------------~l~~-------------------eAiL~~r~~~~-~k~~~k 41 (144)
T cd08766 2 DNKGLIFNVHPVLMVIGFI--------------------FLAG-------------------EAILAYKTVPG-SREVQK 41 (144)
T ss_pred CCCcceeeccHHHHHHHHH--------------------HHHH-------------------HHHHHhhcccc-ccchhH
Confidence 4688999999999999999 9999 99999999885 688889
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCcchhhHHHHHHHHHHHHHhhhhheeehcccCcchhhhhhhhhhhHH
Q psy8990 214 LSHACLHGVILILVLFGLVAAFDSHNFAVPPKPNLYTLHSWIGLLTVILYCSQYVVGFISFMYPGIADALRGVLMPYHVF 293 (358)
Q Consensus 214 ~iH~iLq~lAlilalIGlvAIf~nhn~~~~gipHFySLHSWLGLiTviLf~lQ~l~Gf~sFL~P~~~~~~Ra~l~P~H~f 293 (358)
++|+++|.+|++|+++|++++|+||| ++++|||||+|||+|++|++++.+||++|+++|++|+.+++.|++++|+|++
T Consensus 42 ~iH~~l~~la~~~~vvGl~avf~~~~--~~~~~~~~SlHSwlGl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~ 119 (144)
T cd08766 42 AVHLTLHLVALVLGIVGIYAAFKFHN--EVGIPNLYSLHSWLGIGTISLFGLQWLFGFVTFWFPGASRNTRAALLPWHVF 119 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc--ccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy8990 294 CGVSIFIMSSCAVLTGLLEKAIFT 317 (358)
Q Consensus 294 ~Gl~ifvLaiaT~llGL~eK~~f~ 317 (358)
+|+++|+++++|+++|+.||.+|.
T Consensus 120 ~G~~~~~la~~t~~lGl~ek~~f~ 143 (144)
T cd08766 120 LGLAIYYLAIATAETGLLEKLTFL 143 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999885
No 9
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=100.00 E-value=6.8e-44 Score=312.56 Aligned_cols=142 Identities=44% Similarity=0.806 Sum_probs=136.6
Q ss_pred ecCCCCcccchhhHHHhhhhccccccCCCccchhhhhceeeeeeehhhhhhccCCCCCCCCCCCCceeeEeecccCCCCc
Q psy8990 132 WRSNPGLEFNWHPLLMTIGLVSKDYASSGEGFLMNFIGLLVILYTILIGYLLHKPSYKRYPRPEDVNLIYRSLRNYGKKG 211 (358)
Q Consensus 132 w~~~~~~~FnwHPlLMtlGfv~~~~~~~~~~~~~~~~g~~~~l~g~~~~~~~~~~~~~~~~~~~eaiL~yr~~~~~~k~~ 211 (358)
|| ++. +|||||+||++||+ +++| ||+|+||..|+.+|+.
T Consensus 1 ~~-~~~-~Fn~HP~lm~~G~i--------------------~l~g-------------------eaiL~~~~~~~~~k~~ 39 (143)
T cd08763 1 WS-GPL-QFNVHPLCMVLGLV--------------------FLCG-------------------EALLVYRVFRNETKRS 39 (143)
T ss_pred CC-CCc-ccchhHHHHHHHHH--------------------HHHH-------------------HHHHHhccccccccch
Confidence 55 333 89999999999999 9999 9999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCcchhhHHHHHHHHHHHHHhhhhheeehcccCcchhhhhhhhhhh
Q psy8990 212 LKLSHACLHGVILILVLFGLVAAFDSHNFAVPPKPNLYTLHSWIGLLTVILYCSQYVVGFISFMYPGIADALRGVLMPYH 291 (358)
Q Consensus 212 ~K~iH~iLq~lAlilalIGlvAIf~nhn~~~~gipHFySLHSWLGLiTviLf~lQ~l~Gf~sFL~P~~~~~~Ra~l~P~H 291 (358)
+|++|+++|.+|++|+++|++++|+||| ++++|||||+|||+|++|++++.+||+.|+..|++|+.+++.|++++|+|
T Consensus 40 ~k~~H~~L~~la~~~~~~Gl~av~~~h~--~~~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H 117 (143)
T cd08763 40 TKILHGLLHIMALVISLVGLVAVFDYHQ--ANGYPDMYSLHSWCGILTFVLYFLQWLIGFSFFLFPGASFTLRSQYKPLH 117 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcc--ccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHhHHH
Confidence 9999999999999999999999999999 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8990 292 VFCGVSIFIMSSCAVLTGLLEKAIF 316 (358)
Q Consensus 292 ~f~Gl~ifvLaiaT~llGL~eK~~f 316 (358)
+++|+++|+++++|+++|++||.+|
T Consensus 118 ~~~G~~~f~la~~t~~lG~~ek~~f 142 (143)
T cd08763 118 EFFGRALFLSSVGTSLLGLTEKLLF 142 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999876
No 10
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=99.97 E-value=5.6e-31 Score=222.73 Aligned_cols=131 Identities=46% Similarity=0.854 Sum_probs=125.0
Q ss_pred ccchhhHHHhhhhccccccCCCccchhhhhceeeeeeehhhhhhccCCCCCCCCCCCCceeeEeecccCCCCcchhHHHH
Q psy8990 139 EFNWHPLLMTIGLVSKDYASSGEGFLMNFIGLLVILYTILIGYLLHKPSYKRYPRPEDVNLIYRSLRNYGKKGLKLSHAC 218 (358)
Q Consensus 139 ~FnwHPlLMtlGfv~~~~~~~~~~~~~~~~g~~~~l~g~~~~~~~~~~~~~~~~~~~eaiL~yr~~~~~~k~~~K~iH~i 218 (358)
.|||||+||++||+ ++++ |+++.||.+|..+|+.++++|++
T Consensus 1 ~f~~H~~lm~~g~~--------------------~l~~-------------------~~il~~r~~~~~~~~~~~~~H~~ 41 (131)
T cd08554 1 EFNWHPLLMVIGFV--------------------FLMG-------------------EALLVYRVFRLLTKRALKLLHAI 41 (131)
T ss_pred CCCccHHHHHHHHH--------------------HHHH-------------------HHHHHhccccccchhHHHHHHHH
Confidence 48999999999999 9999 99999999988889999999999
Q ss_pred HHHHHHHHHHHHHhhhhhccCCCCCCCCCcchhhHHHHHHHHHHHHHhhhhheeehcccCcchhhhhhhhhhhHHHHHHH
Q psy8990 219 LHGVILILVLFGLVAAFDSHNFAVPPKPNLYTLHSWIGLLTVILYCSQYVVGFISFMYPGIADALRGVLMPYHVFCGVSI 298 (358)
Q Consensus 219 Lq~lAlilalIGlvAIf~nhn~~~~gipHFySLHSWLGLiTviLf~lQ~l~Gf~sFL~P~~~~~~Ra~l~P~H~f~Gl~i 298 (358)
+|.++++++++|+.+++++|+ +++++||+|+|||+|+++++++++|++.|+..++.|...++.|+.++++|+++|+++
T Consensus 42 l~~l~~~~~~~G~~~~~~~~~--~~~~~h~~s~Hs~lGl~~~~l~~~q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~ 119 (131)
T cd08554 42 LHLLAFVLGLVGLLAVFLFHN--AGGIANLYSLHSWLGLATVLLFLLQFLSGFVLFLLPLLRLSYRSSLLPFHRFFGLAI 119 (131)
T ss_pred HHHHHHHHHHHHHHHHHHhcc--ccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 889999999999999999999999999999999999877667899999999999999
Q ss_pred HHHHHHHHHHHH
Q psy8990 299 FIMSSCAVLTGL 310 (358)
Q Consensus 299 fvLaiaT~llGL 310 (358)
|+++++|+.+|+
T Consensus 120 ~~la~~t~~~G~ 131 (131)
T cd08554 120 FVLAIATILLGI 131 (131)
T ss_pred HHHHHHHHHhcC
Confidence 999999999984
No 11
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.96 E-value=5.1e-30 Score=229.12 Aligned_cols=137 Identities=28% Similarity=0.486 Sum_probs=125.2
Q ss_pred CCcccchhhHHHhhhhccccccCCCccchhhhhceeeeeeehhhhhhccCCCCCCCCCCCCceeeEeeccc---CCCCcc
Q psy8990 136 PGLEFNWHPLLMTIGLVSKDYASSGEGFLMNFIGLLVILYTILIGYLLHKPSYKRYPRPEDVNLIYRSLRN---YGKKGL 212 (358)
Q Consensus 136 ~~~~FnwHPlLMtlGfv~~~~~~~~~~~~~~~~g~~~~l~g~~~~~~~~~~~~~~~~~~~eaiL~yr~~~~---~~k~~~ 212 (358)
....|+|||+||++||+ ++++ |+++.||..+. .+|+.+
T Consensus 17 ~~~~f~~Hp~~m~i~~~--------------------~l~~-------------------~~il~~~~~~~~~~~~~~~~ 57 (183)
T cd08761 17 GTSLFSWHPLLMSLGFL--------------------LLMT-------------------EALLLLQPTSSLTKLARKTK 57 (183)
T ss_pred ccceeehhHHHHHHHHH--------------------HHHH-------------------HHHHHhcCCCCcchhhhhhh
Confidence 34579999999999999 8998 88888885432 478888
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCcchhhHHHHHHHHHHHHHhhhhheeehcccCcch--hhhhhhhhh
Q psy8990 213 KLSHACLHGVILILVLFGLVAAFDSHNFAVPPKPNLYTLHSWIGLLTVILYCSQYVVGFISFMYPGIAD--ALRGVLMPY 290 (358)
Q Consensus 213 K~iH~iLq~lAlilalIGlvAIf~nhn~~~~gipHFySLHSWLGLiTviLf~lQ~l~Gf~sFL~P~~~~--~~Ra~l~P~ 290 (358)
+++|+++|.++++++++|+++++.||+ +++++||+|+|||+|+++++++++|++.|+..++.|...+ +.|+.++++
T Consensus 58 ~~~H~~l~~la~~~~~~G~~~~~~~~~--~~~~~hf~s~H~~lGl~~~~l~~~Q~~~G~~~~~~~~~~~~~~~r~~~~~~ 135 (183)
T cd08761 58 VRLHWILQLLALLCILAGLVAIYYNKE--RNGKPHFTSWHGILGLVTVILIVLQALGGLALLYPPGLRRGESKAKKLKKY 135 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHhhHHHhcccccHHHHHHH
Confidence 999999999999999999999999999 8899999999999999999999999999999888877654 677899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q psy8990 291 HVFCGVSIFIMSSCAVLTGLLEK 313 (358)
Q Consensus 291 H~f~Gl~ifvLaiaT~llGL~eK 313 (358)
|+++|+++++++++|+.+|++|+
T Consensus 136 H~~~G~~~~~l~~~t~~lGl~~~ 158 (183)
T cd08761 136 HRLSGYVAYLLGLATLVLGLETR 158 (183)
T ss_pred HHHHHHHHHHHHHHHHHHhcCch
Confidence 99999999999999999999984
No 12
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=99.96 E-value=7.9e-30 Score=215.32 Aligned_cols=135 Identities=34% Similarity=0.572 Sum_probs=127.0
Q ss_pred hhhHHHhhhhccccccCCCccchhhhhceeeeeeehhhhhhccCCCCCCCCCCCCceeeEee--cccCCCCcchhHHHHH
Q psy8990 142 WHPLLMTIGLVSKDYASSGEGFLMNFIGLLVILYTILIGYLLHKPSYKRYPRPEDVNLIYRS--LRNYGKKGLKLSHACL 219 (358)
Q Consensus 142 wHPlLMtlGfv~~~~~~~~~~~~~~~~g~~~~l~g~~~~~~~~~~~~~~~~~~~eaiL~yr~--~~~~~k~~~K~iH~iL 219 (358)
|||+||++||+ ++++ |+++.+|. .|..+|+.++++|+++
T Consensus 1 ~H~~lm~~~f~--------------------~l~~-------------------~~il~~r~~~~~~~~~~~~~~~H~~l 41 (137)
T PF03188_consen 1 WHPILMTIGFV--------------------FLMP-------------------EGILAARYNPFRRKSRKWWFRIHWIL 41 (137)
T ss_pred CcHHHHHHHHH--------------------HHHH-------------------HHHHHHHHhhhcccccchHHHHHHHH
Confidence 89999999999 8888 88999986 4566888899999999
Q ss_pred HHHHHHHHHHHHhhhhhccCCCCCCCCCcchhhHHHHHHHHHHHHHhhhhheeehcccCcchhhhhhhhhhhHHHHHHHH
Q psy8990 220 HGVILILVLFGLVAAFDSHNFAVPPKPNLYTLHSWIGLLTVILYCSQYVVGFISFMYPGIADALRGVLMPYHVFCGVSIF 299 (358)
Q Consensus 220 q~lAlilalIGlvAIf~nhn~~~~gipHFySLHSWLGLiTviLf~lQ~l~Gf~sFL~P~~~~~~Ra~l~P~H~f~Gl~if 299 (358)
|.++++|+++|+++++.+|+ .++++||+|+|+|+|+++++++++|++.|++.++.|+.+++.|+.+.++|+++|++++
T Consensus 42 q~l~~~~~~~G~~~~~~~~~--~~~~~h~~s~H~~lG~~~~~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~ 119 (137)
T PF03188_consen 42 QVLALVFAIIGFVAIFINKN--RNGKPHFKSWHSILGLATFVLALLQPLLGFFRFFMPGLPRKRRPIWNKWHRWLGYLIY 119 (137)
T ss_pred HHHHHHHHHHHHHHHHHhcc--ccCCCCCCCchhhhhHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 8899999999999999999999999999999998888888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy8990 300 IMSSCAVLTGLLEKAIFT 317 (358)
Q Consensus 300 vLaiaT~llGL~eK~~f~ 317 (358)
+++++|+.+|+.|+..|+
T Consensus 120 ~l~~~~i~~G~~~~~~f~ 137 (137)
T PF03188_consen 120 VLAIATIFLGLTEKAWFK 137 (137)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 999999999999998773
No 13
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=99.95 E-value=3.6e-28 Score=205.76 Aligned_cols=128 Identities=37% Similarity=0.647 Sum_probs=120.2
Q ss_pred hhhHHHhhhhccccccCCCccchhhhhceeeeeeehhhhhhccCCCCCCCCCCCCceeeEee-cccCCCCcchhHHHHHH
Q psy8990 142 WHPLLMTIGLVSKDYASSGEGFLMNFIGLLVILYTILIGYLLHKPSYKRYPRPEDVNLIYRS-LRNYGKKGLKLSHACLH 220 (358)
Q Consensus 142 wHPlLMtlGfv~~~~~~~~~~~~~~~~g~~~~l~g~~~~~~~~~~~~~~~~~~~eaiL~yr~-~~~~~k~~~K~iH~iLq 220 (358)
|||+||++||+ ++++ |+++.+|. .+..+|+.++++|+.+|
T Consensus 1 ~H~~lm~~~f~--------------------~l~p-------------------~gil~~r~~~~~~~~~~~~~~H~~lq 41 (129)
T smart00665 1 LHPVLMILGFG--------------------FLMG-------------------EAILVARPLTRFLSKPTWFLLHVVLQ 41 (129)
T ss_pred CcHHHHHHHHH--------------------HHHH-------------------HHHHHhhhHhhcccchHHHHHHHHHH
Confidence 89999999999 8888 99999995 67678889999999999
Q ss_pred HHHHHHHHHHHhhhhhccCCCCCCCCCcchhhHHHHHHHHHHHHHhhhhheeehcccCcchhhhhhhhhhhHHHHHHHHH
Q psy8990 221 GVILILVLFGLVAAFDSHNFAVPPKPNLYTLHSWIGLLTVILYCSQYVVGFISFMYPGIADALRGVLMPYHVFCGVSIFI 300 (358)
Q Consensus 221 ~lAlilalIGlvAIf~nhn~~~~gipHFySLHSWLGLiTviLf~lQ~l~Gf~sFL~P~~~~~~Ra~l~P~H~f~Gl~ifv 300 (358)
.+|++|+++|+++++.+|+ +++++||+|+|||+|+++++++++|++.|++.++.|+...+.|+.++++|+++|+++++
T Consensus 42 ~~a~~~~~~g~~~~~~~~~--~~~~~~~~s~H~~lGl~~~~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~ 119 (129)
T smart00665 42 ILALVLGVIGLLAIFISHN--ESGIANFYSLHSWLGLAAFVLAGLQWLSGFLRPLPPGLPSKYRSYLNPYHRFVGLAAFI 119 (129)
T ss_pred HHHHHHHHHHHHHHHHHcc--ccCCCCccchhHHHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 88899999999999999999999999999998887776677789999999999999999
Q ss_pred HHHHHHHHHH
Q psy8990 301 MSSCAVLTGL 310 (358)
Q Consensus 301 LaiaT~llGL 310 (358)
++++|+.+|+
T Consensus 120 la~~~~~lG~ 129 (129)
T smart00665 120 LAIVTIFLGL 129 (129)
T ss_pred HHHHHHHccC
Confidence 9999999985
No 14
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.81 E-value=4.7e-20 Score=165.34 Aligned_cols=132 Identities=21% Similarity=0.234 Sum_probs=116.1
Q ss_pred CCcccchhhHHHhhhhccccccCCCccchhhhhceeeeeeehhhhhhccCCCCCCCCCCCCceeeEeecccCCCCcchhH
Q psy8990 136 PGLEFNWHPLLMTIGLVSKDYASSGEGFLMNFIGLLVILYTILIGYLLHKPSYKRYPRPEDVNLIYRSLRNYGKKGLKLS 215 (358)
Q Consensus 136 ~~~~FnwHPlLMtlGfv~~~~~~~~~~~~~~~~g~~~~l~g~~~~~~~~~~~~~~~~~~~eaiL~yr~~~~~~k~~~K~i 215 (358)
+...+++|++||+++|+ +++. .+++.+|.++ .+++.++++
T Consensus 32 ~~~~~~~Hg~lm~iaw~--------------------~l~p-------------------~gil~ar~~~-~~~~~~~~~ 71 (191)
T cd08760 32 SDTLIKAHGVLMAIAWG--------------------ILMP-------------------IGALLARYFL-LGDPVWFYL 71 (191)
T ss_pred hhHHHHHHHHHHHHHHH--------------------HHHH-------------------HHHHHHHHhc-cCCchhHHH
Confidence 56679999999999999 8887 7888887653 366788999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCcchhhHHHHHHHHHHHHHhhhhheeehcccCcchhhhhhhhhhhHHHH
Q psy8990 216 HACLHGVILILVLFGLVAAFDSHNFAVPPKPNLYTLHSWIGLLTVILYCSQYVVGFISFMYPGIADALRGVLMPYHVFCG 295 (358)
Q Consensus 216 H~iLq~lAlilalIGlvAIf~nhn~~~~gipHFySLHSWLGLiTviLf~lQ~l~Gf~sFL~P~~~~~~Ra~l~P~H~f~G 295 (358)
|+.+|.++++++++|+..++.++ ..+.+|+++.|+|+|+++++++++|.+.|++ .|...++.|+..+++|++.|
T Consensus 72 H~~~q~~~~~~~i~g~~~~~~~~---~~~~~~~~~~H~~lGl~~~~l~~lQ~~~G~~---~~~~~~~~R~~~~~~H~~~G 145 (191)
T cd08760 72 HAGLQLLAVLLAIAGFVLGIVLV---QGGGGSLNNAHAILGIIVLALAILQPLLGLL---RPHPGSKKRSIWNWAHRWLG 145 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh---ccCCCCCcCcchhhhHHHHHHHHHHHHHHHh---cCCCCCCcccchHHHHHHHH
Confidence 99999999999999999999987 3467999999999999999999999999994 35545557778899999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8990 296 VSIFIMSSCAVLTGLLEK 313 (358)
Q Consensus 296 l~ifvLaiaT~llGL~eK 313 (358)
+++++++++++.+|+...
T Consensus 146 ~~~~~l~~v~i~~G~~~~ 163 (191)
T cd08760 146 RAALILAIVNIFLGLDLA 163 (191)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999999865
No 15
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=98.10 E-value=3.9e-07 Score=85.65 Aligned_cols=94 Identities=30% Similarity=0.570 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcceeecce-e--ec--C--CCCcccchhhHHHhhhhc----------------c-ccc-cC
Q psy8990 104 IFYFSQAVGAAIVVLVSIWTIHHRGGF-T--WR--S--NPGLEFNWHPLLMTIGLV----------------S-KDY-AS 158 (358)
Q Consensus 104 ~~~~a~~lgl~~vvlv~~W~~~~rgGf-~--w~--~--~~~~~FnwHPlLMtlGfv----------------~-~~~-~~ 158 (358)
++...-++|++++++.. +|+..|| . +. + .+.....||-.+-...|+ + ++| .+
T Consensus 93 fySlHSwlGl~t~~L~~---lQ~~~Gf~~fl~P~~~~~~r~~~~p~H~~~Gl~~fvLaiaT~~lGl~ek~~f~~~~~~~~ 169 (214)
T cd08764 93 MYSLHSWLGLTAVILFS---LQWVGGFVSFLFPGLPETLRAAYLPLHVFFGLFIFVLAVATALLGITEKAFFSLNKYSNL 169 (214)
T ss_pred ccchHHHHHHHHHHHHH---HHHHHHHHHHHhcccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccC
Confidence 34555667777654443 3444454 2 11 1 134567899999988888 1 358 99
Q ss_pred CCccchhhhhceeeeeeehhhhhhccCCCCCCCCCCCCceee
Q psy8990 159 SGEGFLMNFIGLLVILYTILIGYLLHKPSYKRYPRPEDVNLI 200 (358)
Q Consensus 159 ~~~~~~~~~~g~~~~l~g~~~~~~~~~~~~~~~~~~~eaiL~ 200 (358)
|+|+++.|++|++++++|++|+|....|+|||.|.|||..+.
T Consensus 170 ~~e~~l~N~~gl~~~~fg~~V~~~~~~~~~kr~~~~~~~~~~ 211 (214)
T cd08764 170 PAEGVLGNFIGIVLVIFGGLVVYLVTEPDYKRIELPEEEELL 211 (214)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHhccCcccCCCCCchhhhhh
Confidence 999999999999999999999999999999999999987663
No 16
>PLN02351 cytochromes b561 family protein
Probab=97.92 E-value=2.4e-06 Score=81.80 Aligned_cols=93 Identities=20% Similarity=0.353 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcceeeccee--ec---C--CCCcccchhhHHHhhhhc-------------------cccc-
Q psy8990 104 IFYFSQAVGAAIVVLVSIWTIHHRGGFT--WR---S--NPGLEFNWHPLLMTIGLV-------------------SKDY- 156 (358)
Q Consensus 104 ~~~~a~~lgl~~vvlv~~W~~~~rgGf~--w~---~--~~~~~FnwHPlLMtlGfv-------------------~~~~- 156 (358)
++.+.-++|++++++.. +|+..||. |- + -+...++||-.+-.+.|+ +++|
T Consensus 116 lySLHSWlGl~tv~Lf~---lQwv~Gf~~F~~P~~~~~~Ra~~~P~Hv~~Gl~if~LaiaTa~lGl~EKl~F~~~~~~y~ 192 (242)
T PLN02351 116 FYSLHSWMGLICVSLFG---AQWLTGFMSFWHRGEMRTTRTTVLPWHVFLGLYTYGLAVATAETGLLEKLTFLQTKRNVS 192 (242)
T ss_pred hhHHHHHHHHHHHHHHH---HHHHHHHHHHhcCCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 45667778888765543 45555553 21 1 134578999999888777 2578
Q ss_pred cCCCccchhhhhceeeeeeehhhhhhccCCCCCCCCCCCCceeeEee
Q psy8990 157 ASSGEGFLMNFIGLLVILYTILIGYLLHKPSYKRYPRPEDVNLIYRS 203 (358)
Q Consensus 157 ~~~~~~~~~~~~g~~~~l~g~~~~~~~~~~~~~~~~~~~eaiL~yr~ 203 (358)
..|+|++++|++|++++++|.+|+|....|+|||.+. + +.|..
T Consensus 193 ~~~~Ea~lvN~~Glliv~fG~~Vv~~~~~p~~kr~~~--~--~~~~~ 235 (242)
T PLN02351 193 KHGSESMVVNGLGLGLALLSGIVILAAVLPKYQSHSS--K--LVYSS 235 (242)
T ss_pred cCCchhhhHHHHHHHHHHHHHHHHHhhcCccccCCCc--c--CCccc
Confidence 9999999999999999999999999999999999433 4 77754
No 17
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=97.44 E-value=0.00012 Score=61.86 Aligned_cols=86 Identities=28% Similarity=0.407 Sum_probs=66.3
Q ss_pred CCcccchhhHHHhhhhccccccCCCccchhhhhceeeeeeehhhhhhccCCCCCCCCCCCCceeeEeecccCCCCcchhH
Q psy8990 136 PGLEFNWHPLLMTIGLVSKDYASSGEGFLMNFIGLLVILYTILIGYLLHKPSYKRYPRPEDVNLIYRSLRNYGKKGLKLS 215 (358)
Q Consensus 136 ~~~~FnwHPlLMtlGfv~~~~~~~~~~~~~~~~g~~~~l~g~~~~~~~~~~~~~~~~~~~eaiL~yr~~~~~~k~~~K~i 215 (358)
.+..+-+|..+|+++++ +++-+ +++ .+..| .+.
T Consensus 14 ~~~~l~~Hi~lm~la~~--------------------il~Pi-------------------~lv-L~~~~-------sr~ 46 (105)
T PF10348_consen 14 HRSALYAHIVLMTLAWV--------------------ILYPI-------------------GLV-LGNAR-------SRW 46 (105)
T ss_pred chHHHHHHHHHHHHHHH--------------------HHHHH-------------------HHH-HHHcc-------chH
Confidence 45568999999999999 66652 111 11111 234
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCc--chhhHHHHHHHHHHHHHhhhhhee
Q psy8990 216 HACLHGVILILVLFGLVAAFDSHNFAVPPKPNL--YTLHSWIGLLTVILYCSQYVVGFI 272 (358)
Q Consensus 216 H~iLq~lAlilalIGlvAIf~nhn~~~~gipHF--ySLHSWLGLiTviLf~lQ~l~Gf~ 272 (358)
|...|++++++.++|+..-..+++ ..||| .+.|+.+|.+.+++.++|.++|++
T Consensus 47 ~~~~q~~~~~l~~~g~~~g~~~~~----~~p~lyp~n~H~k~g~il~~l~~~q~~~gv~ 101 (105)
T PF10348_consen 47 HLPVQTVFLVLMILGLFLGSVYNG----STPDLYPNNAHGKMGWILFVLMIVQVILGVI 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc----CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987766655 23666 599999999999999999999985
No 18
>KOG1619|consensus
Probab=97.29 E-value=2.9e-05 Score=74.40 Aligned_cols=93 Identities=26% Similarity=0.528 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHhhcceeeccee--ec----CC-CCcccchhhHHHhhhhc------------------cccc-cC
Q psy8990 105 FYFSQAVGAAIVVLVSIWTIHHRGGFT--WR----SN-PGLEFNWHPLLMTIGLV------------------SKDY-AS 158 (358)
Q Consensus 105 ~~~a~~lgl~~vvlv~~W~~~~rgGf~--w~----~~-~~~~FnwHPlLMtlGfv------------------~~~~-~~ 158 (358)
+.+.-++|+.+ ++....||.-||. |- ++ +..+.+||-.+-...|+ -+|| ..
T Consensus 123 ySLHSWlGl~~---v~ly~~Q~v~GF~tfl~pg~~~~~Rs~lmP~H~~~Gl~~f~lai~ta~~Gl~ek~~f~~~~~~s~~ 199 (245)
T KOG1619|consen 123 YSLHSWLGLCV---VILYSLQWVFGFFTFLFPGSPESYRSRLMPWHVFLGLAIFILAIVTALTGLLEKLTFLCFGDLSTK 199 (245)
T ss_pred eeHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCCccHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccc
Confidence 45556677765 4455566666755 21 12 45689999999887777 1488 88
Q ss_pred CCccchhhhhceeeeeeehhhhhhccCCCCCCCCCCCCceee
Q psy8990 159 SGEGFLMNFIGLLVILYTILIGYLLHKPSYKRYPRPEDVNLI 200 (358)
Q Consensus 159 ~~~~~~~~~~g~~~~l~g~~~~~~~~~~~~~~~~~~~eaiL~ 200 (358)
++|+.+.|++|++++++|.+|+++...|++||...|||-.+.
T Consensus 200 ~~e~~l~n~~gv~~il~g~~Vl~~v~~~~~kr~s~~~e~~~~ 241 (245)
T KOG1619|consen 200 NPEGYLVNFLGVFIILFGVLVLTLVTPPPWKRPSEPEELGLS 241 (245)
T ss_pred CHHHHHHHHHHHHHHHHHHHheEEEecCCCCCCCCcHHHhhh
Confidence 999999999999999999999999999999999999987664
No 19
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=96.48 E-value=0.0069 Score=55.62 Aligned_cols=89 Identities=17% Similarity=0.205 Sum_probs=62.3
Q ss_pred cchhHHHHHHHHHHHH----HHHHHhhhhhccCCCCCCCCCcchhhHHHHHHHHHHHHHhhhhheeehcccCcchhhhhh
Q psy8990 211 GLKLSHACLHGVILIL----VLFGLVAAFDSHNFAVPPKPNLYTLHSWIGLLTVILYCSQYVVGFISFMYPGIADALRGV 286 (358)
Q Consensus 211 ~~K~iH~iLq~lAlil----alIGlvAIf~nhn~~~~gipHFySLHSWLGLiTviLf~lQ~l~Gf~sFL~P~~~~~~Ra~ 286 (358)
..|..|.-+-...+.+ .+.|...++.+.+ +=|.|.|=|.|++.+.|..++....- ..+ +..++.
T Consensus 78 ~~r~~H~~~g~~ll~~~~L~~lGG~~~~~~~~~------~lf~spH~~~Gl~~~~L~~~s~al~~--~i~----~g~~~~ 145 (175)
T PF13301_consen 78 KARDRHYRLGFALLAFMGLGALGGQLGTYRQNG------KLFWSPHLWAGLAVVGLMAFSAALVP--QIQ----KGNRPW 145 (175)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCC------CCccCchHHHHHHHHHHHHHHHHHHH--HHc----cCCchh
Confidence 3366676444433333 3334455555444 47899999999999999998876543 122 222456
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Q psy8990 287 LMPYHVFCGVSIFIMSSCAVLTGLL 311 (358)
Q Consensus 287 l~P~H~f~Gl~ifvLaiaT~llGL~ 311 (358)
.+..|...+.+++++-...+++|..
T Consensus 146 ~R~lHi~lN~~~l~Lf~~q~itG~~ 170 (175)
T PF13301_consen 146 ARRLHIYLNSLALLLFAWQAITGWR 170 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999999999999999985
No 20
>KOG4293|consensus
Probab=96.41 E-value=0.00045 Score=70.05 Aligned_cols=110 Identities=22% Similarity=0.269 Sum_probs=87.8
Q ss_pred CceeeEeecccC--CCCcchhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCcchhhHHHHHHHHHHHHHhhhhheee
Q psy8990 196 DVNLIYRSLRNY--GKKGLKLSHACLHGVILILVLFGLVAAFDSHNFAVPPKPNLYTLHSWIGLLTVILYCSQYVVGFIS 273 (358)
Q Consensus 196 eaiL~yr~~~~~--~k~~~K~iH~iLq~lAlilalIGlvAIf~nhn~~~~gipHFySLHSWLGLiTviLf~lQ~l~Gf~s 273 (358)
-.++.-|.+|.. -...+..+|..+|..++++.+.|+...-+.-+ + ....-++.|.-+|+.++++-++|++..+.
T Consensus 229 ~g~i~ary~~~~~~~~~~Wfy~H~~~~~~~~~~~~~~~~~g~~~~~--~-s~~~~~~~h~~~G~~~~~l~~lQ~~~~l~- 304 (403)
T KOG4293|consen 229 AGAIIARYLRQKPSGDPTWFYIHRACQFTGFILGVAGFVDGLKLSN--E-SDGTVYSAHTDLGIILLVLAFLQPLALLL- 304 (403)
T ss_pred ccceeEEEecccCCCCcchhhhhhhheeeEEEEEeeeeeeeEEEcc--C-CCceeeeecccchhHHHHHHHHHHHHHHh-
Confidence 445555665542 24567999999999998888888776665544 2 45678999999999999999999997763
Q ss_pred hcccCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy8990 274 FMYPGIADALRGVLMPYHVFCGVSIFIMSSCAVLTGLL 311 (358)
Q Consensus 274 FL~P~~~~~~Ra~l~P~H~f~Gl~ifvLaiaT~llGL~ 311 (358)
=|....+.|+..-.+|+..|+...+++++++..|+.
T Consensus 305 --Rp~~~~k~R~~~nwyH~~~g~~~~~~~~~~i~~~~~ 340 (403)
T KOG4293|consen 305 --RPLPESKIRRYWNWYHHLVGRLSIILGIVNIFDGLE 340 (403)
T ss_pred --cCCcccCceeccceeeeecCcceeeehhhHHhhhHh
Confidence 366666777777889999999999999999999986
No 21
>PLN02810 carbon-monoxide oxygenase
Probab=96.25 E-value=0.00091 Score=63.97 Aligned_cols=84 Identities=23% Similarity=0.380 Sum_probs=62.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhcceeecce-e-e-c--C--CCCcccchhhHHHhhhhc------------------cc
Q psy8990 100 GFNPIFYFSQAVGAAIVVLVSIWTIHHRGGF-T-W-R--S--NPGLEFNWHPLLMTIGLV------------------SK 154 (358)
Q Consensus 100 ~f~~~~~~a~~lgl~~vvlv~~W~~~~rgGf-~-w-~--~--~~~~~FnwHPlLMtlGfv------------------~~ 154 (358)
+.+-++.+.-++|++++++. ..|+..|| . | . + -+....+||-.+-...|+ ++
T Consensus 109 ~i~nlySLHSWlGl~tv~Lf---~lQw~~Gf~~Fl~P~~~~~~R~~~lP~Hv~~Gl~if~LAiata~lGi~EKl~Fl~~~ 185 (231)
T PLN02810 109 GIANLYSLHSWLGIGIISLY---GIQWIYGFIVFFFPGGSTNLRSGSLPWHVLFGLFVYILAVGNAALGFLEKLTFLESG 185 (231)
T ss_pred CCCceeeHHHHHHHHHHHHH---HHHHHHHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34445667777888875444 45666666 2 1 1 1 134467999999888777 35
Q ss_pred cc-cCCCccchhhhhceeeeeeehhhhhhccCC
Q psy8990 155 DY-ASSGEGFLMNFIGLLVILYTILIGYLLHKP 186 (358)
Q Consensus 155 ~~-~~~~~~~~~~~~g~~~~l~g~~~~~~~~~~ 186 (358)
+| ..|+|+++.|++|++++++|.+|+|....+
T Consensus 186 ~~~~~~~Ea~lvN~~Glliv~fg~~V~~~~~~~ 218 (231)
T PLN02810 186 GLDKYGSEALLVNFTAIITILYGAFVVLTALAQ 218 (231)
T ss_pred CcCCCCchhhhHHHHHHHHHHHHHHHHHhhccC
Confidence 78 899999999999999999999999998764
No 22
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=96.25 E-value=0.049 Score=46.08 Aligned_cols=123 Identities=16% Similarity=0.246 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHH-HHHhhhhhccCCCCCCCCCcchhhHHHHHHHHHHHHHhhhhheeehcccCcchhhhhhhhhhhHH
Q psy8990 215 SHACLHGVILILVL-FGLVAAFDSHNFAVPPKPNLYTLHSWIGLLTVILYCSQYVVGFISFMYPGIADALRGVLMPYHVF 293 (358)
Q Consensus 215 iH~iLq~lAlilal-IGlvAIf~nhn~~~~gipHFySLHSWLGLiTviLf~lQ~l~Gf~sFL~P~~~~~~Ra~l~P~H~f 293 (358)
.|.+++.+|+.+.. .|+.+.-.++ ....+.+....+|..+-++.+++.++-.++.+... ...-++.+.-+|..
T Consensus 1 ~H~~lm~~~f~~l~~~~il~~r~~~-~~~~~~~~~~~~H~~lq~l~~~~~~~G~~~~~~~~-----~~~~~~h~~s~H~~ 74 (137)
T PF03188_consen 1 WHPILMTIGFVFLMPEGILAARYNP-FRRKSRKWWFRIHWILQVLALVFAIIGFVAIFINK-----NRNGKPHFKSWHSI 74 (137)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhh-hcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cccCCCCCCCchhh
Confidence 49999999998765 6666655433 22456788899999999988888776666555321 11123556779999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC-CchhHHHHHHHHHHHHHHHhh
Q psy8990 294 CGVSIFIMSSCAVLTGLLEKAIFTLSKDYAS-SGEGFLMNFIGLLVILYTILI 345 (358)
Q Consensus 294 ~Gl~ifvLaiaT~llGL~eK~~f~~~~~y~~-~~e~~l~N~lGl~li~~g~lV 345 (358)
.|++++++.+...+.|+........ +.+. +.-...=..+|.++.+.++.-
T Consensus 75 lG~~~~~l~~~Q~~~G~~~~~~~~~--~~~~r~~~~~~H~~~G~~~~~l~~~~ 125 (137)
T PF03188_consen 75 LGLATFVLALLQPLLGFFRFFMPGL--PRKRRPIWNKWHRWLGYLIYVLAIAT 125 (137)
T ss_pred hhHHHHHHHHHHHHHHHHHHccCCC--cccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999986632111 1111 222223345677666666543
No 23
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=96.09 E-value=0.037 Score=47.08 Aligned_cols=120 Identities=18% Similarity=0.297 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHH-HHHhhhhhc-cCCCCCCCCCcchhhHHHHHHHHHHHHHhhhhheeehcccCcchhhhhhhhhhhH
Q psy8990 215 SHACLHGVILILVL-FGLVAAFDS-HNFAVPPKPNLYTLHSWIGLLTVILYCSQYVVGFISFMYPGIADALRGVLMPYHV 292 (358)
Q Consensus 215 iH~iLq~lAlilal-IGlvAIf~n-hn~~~~gipHFySLHSWLGLiTviLf~lQ~l~Gf~sFL~P~~~~~~Ra~l~P~H~ 292 (358)
.|.++..+|+++.. .|+.. ++. .+ ..+++...-+|-++.++++++.++-+..++... ...-++...-.|.
T Consensus 1 ~H~~lm~~~f~~l~p~gil~-~r~~~~--~~~~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~-----~~~~~~~~~s~H~ 72 (129)
T smart00665 1 LHPVLMILGFGFLMGEAILV-ARPLTR--FLSKPTWFLLHVVLQILALVLGVIGLLAIFISH-----NESGIANFYSLHS 72 (129)
T ss_pred CcHHHHHHHHHHHHHHHHHH-hhhHhh--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cccCCCCccchhH
Confidence 48999999995544 55544 442 22 345678889999999999999887777666331 1112356778999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCchhHHH----HHHHHHHHHHHHhhee
Q psy8990 293 FCGVSIFIMSSCAVLTGLLEKAIFTLSKDYASSGEGFLM----NFIGLLVILYTILIGY 347 (358)
Q Consensus 293 f~Gl~ifvLaiaT~llGL~eK~~f~~~~~y~~~~e~~l~----N~lGl~li~~g~lV~~ 347 (358)
..|++++++.....+.|+... + . +..+.+..... .++|.++++.++...+
T Consensus 73 ~lGl~~~~l~~~Q~~~G~~~~--~-~--~~~~~~~r~~~~~~H~~~G~~~~~la~~~~~ 126 (129)
T smart00665 73 WLGLAAFVLAGLQWLSGFLRP--L-P--PGLPSKYRSYLNPYHRFVGLAAFILAIVTIF 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--c-C--CccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999842 1 1 11112222223 3578888888776543
No 24
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=95.79 E-value=0.035 Score=48.20 Aligned_cols=102 Identities=19% Similarity=0.247 Sum_probs=73.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhhccC--CCCCCCCCcchhhHHHHHHHHHHHHHhhhhheeeh--------------
Q psy8990 211 GLKLSHACLHGVILILVLFGLVAAFDSHN--FAVPPKPNLYTLHSWIGLLTVILYCSQYVVGFISF-------------- 274 (358)
Q Consensus 211 ~~K~iH~iLq~lAlilalIGlvAIf~nhn--~~~~gipHFySLHSWLGLiTviLf~lQ~l~Gf~sF-------------- 274 (358)
..+..||+.=.+-+++.+.|+...+.... ...........+|-++|++.+++.++..+.++...
T Consensus 7 ~~R~~Hw~~al~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (188)
T PF00033_consen 7 FTRLLHWLNALLFILLLITGLYLMFPFWWLAGGFPGRQLLRWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQIP 86 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-TTGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHH
Confidence 34889999999999999999988743111 11334577889999999999999999999998761
Q ss_pred ---cccCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy8990 275 ---MYPGIADALRGVLMPYHVFCGVSIFIMSSCAVLTGLLE 312 (358)
Q Consensus 275 ---L~P~~~~~~Ra~l~P~H~f~Gl~ifvLaiaT~llGL~e 312 (358)
..+......++...+..+..-.+++.+.++.+++|+.-
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG~~~ 127 (188)
T PF00033_consen 87 QYRLFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITGLIM 127 (188)
T ss_dssp HHHTT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222334667788888899999999999999875
No 25
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=95.76 E-value=0.086 Score=44.77 Aligned_cols=122 Identities=18% Similarity=0.175 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHH-HHHHHHhhhhhccCCCCCCCCCcchhhHHHHHHHHHHHHHhhhhheeehcccCcchhhhhhhhhhhH
Q psy8990 214 LSHACLHGVILI-LVLFGLVAAFDSHNFAVPPKPNLYTLHSWIGLLTVILYCSQYVVGFISFMYPGIADALRGVLMPYHV 292 (358)
Q Consensus 214 ~iH~iLq~lAli-lalIGlvAIf~nhn~~~~gipHFySLHSWLGLiTviLf~lQ~l~Gf~sFL~P~~~~~~Ra~l~P~H~ 292 (358)
..|.+++.++++ +...|+. +++.-+ ..+++...-+|..+.++++++.++=...++... ...-++.+.-.|.
T Consensus 3 ~~H~~lm~~g~~~l~~~~il-~~r~~~--~~~~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~-----~~~~~~h~~s~Hs 74 (131)
T cd08554 3 NWHPLLMVIGFVFLMGEALL-VYRVFR--LLTKRALKLLHAILHLLAFVLGLVGLLAVFLFH-----NAGGIANLYSLHS 74 (131)
T ss_pred CccHHHHHHHHHHHHHHHHH-Hhcccc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cccCcccchhHHH
Confidence 469999999987 4555544 444322 234566678999999999888886666665321 1222356778999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC--CCchhHHHHHHHHHHHHHHHhhe
Q psy8990 293 FCGVSIFIMSSCAVLTGLLEKAIFTLSKDYA--SSGEGFLMNFIGLLVILYTILIG 346 (358)
Q Consensus 293 f~Gl~ifvLaiaT~llGL~eK~~f~~~~~y~--~~~e~~l~N~lGl~li~~g~lV~ 346 (358)
.+|++++++..+..+.|+..... .++-. +..-...=.++|.++.+.++...
T Consensus 75 ~lGl~~~~l~~~q~~~G~~~~~~---~~~~~~~r~~~~~~H~~~G~~~~~la~~t~ 127 (131)
T cd08554 75 WLGLATVLLFLLQFLSGFVLFLL---PLLRLSYRSSLLPFHRFFGLAIFVLAIATI 127 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---ccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999986421 11111 12223334457888777776543
No 26
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=95.39 E-value=0.089 Score=47.52 Aligned_cols=96 Identities=23% Similarity=0.333 Sum_probs=72.7
Q ss_pred CCCcchhHHHHHHHHHHHHHH-HHHhhhhhccCCCCCCCCCcchhhHHHHHHHHHHHHHhhhhheeehcccCcchhhhhh
Q psy8990 208 GKKGLKLSHACLHGVILILVL-FGLVAAFDSHNFAVPPKPNLYTLHSWIGLLTVILYCSQYVVGFISFMYPGIADALRGV 286 (358)
Q Consensus 208 ~k~~~K~iH~iLq~lAlilal-IGlvAIf~nhn~~~~gipHFySLHSWLGLiTviLf~lQ~l~Gf~sFL~P~~~~~~Ra~ 286 (358)
++......|.+++.+|+.+.. +|+.+.-..+ .+.+...-+|..+=++++++.+.-+++|+... ..-+..
T Consensus 31 ~~~~~~~~Hg~lm~iaw~~l~p~gil~ar~~~----~~~~~~~~~H~~~q~~~~~~~i~g~~~~~~~~------~~~~~~ 100 (191)
T cd08760 31 SSDTLIKAHGVLMAIAWGILMPIGALLARYFL----LGDPVWFYLHAGLQLLAVLLAIAGFVLGIVLV------QGGGGS 100 (191)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh------ccCCCC
Confidence 455668999999999998866 5554433221 22345556999999999999888888887532 223456
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy8990 287 LMPYHVFCGVSIFIMSSCAVLTGLLEK 313 (358)
Q Consensus 287 l~P~H~f~Gl~ifvLaiaT~llGL~eK 313 (358)
....|...|++++++.+...+.|+..+
T Consensus 101 ~~~~H~~lGl~~~~l~~lQ~~~G~~~~ 127 (191)
T cd08760 101 LNNAHAILGIIVLALAILQPLLGLLRP 127 (191)
T ss_pred CcCcchhhhHHHHHHHHHHHHHHHhcC
Confidence 788999999999999999999999755
No 27
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=95.39 E-value=0.25 Score=44.56 Aligned_cols=131 Identities=14% Similarity=0.107 Sum_probs=83.6
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhccC-CCCCCCCCcchhhHHHHHHHHHHHHHhhhhheeehcccCcchhhhhhhhhh
Q psy8990 212 LKLSHACLHGVILILVLFGLVAAFDSHN-FAVPPKPNLYTLHSWIGLLTVILYCSQYVVGFISFMYPGIADALRGVLMPY 290 (358)
Q Consensus 212 ~K~iH~iLq~lAlilalIGlvAIf~nhn-~~~~gipHFySLHSWLGLiTviLf~lQ~l~Gf~sFL~P~~~~~~Ra~l~P~ 290 (358)
....|.+++.+++++..-.-..+++..+ ..+.+++.-.-+|.++-++++.+.++-....+.. ....-++-+.-+
T Consensus 20 ~f~~Hp~~m~i~~~~l~~~~il~~~~~~~~~~~~~~~~~~~H~~l~~la~~~~~~G~~~~~~~-----~~~~~~~hf~s~ 94 (183)
T cd08761 20 LFSWHPLLMSLGFLLLMTEALLLLQPTSSLTKLARKTKVRLHWILQLLALLCILAGLVAIYYN-----KERNGKPHFTSW 94 (183)
T ss_pred eeehhHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh-----cccCCCCCccch
Confidence 4678999999999976666555555322 1013567778899999999888877554443311 111223567789
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC-CchhHHHHHHHHHHHHHHHhhee
Q psy8990 291 HVFCGVSIFIMSSCAVLTGLLEKAIFTLSKDYAS-SGEGFLMNFIGLLVILYTILIGY 347 (358)
Q Consensus 291 H~f~Gl~ifvLaiaT~llGL~eK~~f~~~~~y~~-~~e~~l~N~lGl~li~~g~lV~~ 347 (358)
|..+|++++++.+.+.+.|+.....-...+..++ ..-...=.++|.++.+.++.-..
T Consensus 95 H~~lGl~~~~l~~~Q~~~G~~~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~ 152 (183)
T cd08761 95 HGILGLVTVILIVLQALGGLALLYPPGLRRGESKAKKLKKYHRLSGYVAYLLGLATLV 152 (183)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHhhHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999975422111111122 22223334467777777666544
No 28
>PLN02680 carbon-monoxide oxygenase
Probab=95.02 E-value=0.0043 Score=59.42 Aligned_cols=85 Identities=21% Similarity=0.412 Sum_probs=60.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhcceeeccee--e-c----CCCCcccchhhHHHhhhhc-------------------c
Q psy8990 100 GFNPIFYFSQAVGAAIVVLVSIWTIHHRGGFT--W-R----SNPGLEFNWHPLLMTIGLV-------------------S 153 (358)
Q Consensus 100 ~f~~~~~~a~~lgl~~vvlv~~W~~~~rgGf~--w-~----~~~~~~FnwHPlLMtlGfv-------------------~ 153 (358)
+.+-++.+.-++|++++++.. +|+..||. | . +.+.....||-.+-...|+ +
T Consensus 109 ~~~nfySlHSWlGl~t~iL~~---lQ~~~Gf~~f~~P~~~~~~R~~~~p~H~~~G~~if~LaiaT~~lG~~Ek~~f~~~~ 185 (232)
T PLN02680 109 GIDNFYSLHSWLGLACLFLFS---LQWAAGFVTFWYPGGSRNSRASLLPWHVFFGIYIYALAVATATTGILEKATFLQSN 185 (232)
T ss_pred CccccccHHHHHHHHHHHHHH---HHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 334445666677877754443 34445543 1 1 1134567999999887777 2
Q ss_pred ccc-cCCCccchhhhhceeeeeeehhhhhhccCCC
Q psy8990 154 KDY-ASSGEGFLMNFIGLLVILYTILIGYLLHKPS 187 (358)
Q Consensus 154 ~~~-~~~~~~~~~~~~g~~~~l~g~~~~~~~~~~~ 187 (358)
+.| ..|+|+++.|++|++++++|.+|+|....|.
T Consensus 186 ~~~~~~~~e~~lvN~~gl~~~~fg~~V~~~v~~p~ 220 (232)
T PLN02680 186 KVISRYSTEAMLVNSLGILIVVLGGFVILAIVTPL 220 (232)
T ss_pred CccCCCCchhhhHhHHHHHHHHHHHHHHHhhcccc
Confidence 468 8999999999999999999999999988853
No 29
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=93.49 E-value=1.5 Score=39.13 Aligned_cols=123 Identities=14% Similarity=0.144 Sum_probs=81.5
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCcchhhHHHHHHHHHHHHHhhhhheeehcccCcchhhhhhhhhhh
Q psy8990 212 LKLSHACLHGVILILVLFGLVAAFDSHNFAVPPKPNLYTLHSWIGLLTVILYCSQYVVGFISFMYPGIADALRGVLMPYH 291 (358)
Q Consensus 212 ~K~iH~iLq~lAlilalIGlvAIf~nhn~~~~gipHFySLHSWLGLiTviLf~lQ~l~Gf~sFL~P~~~~~~Ra~l~P~H 291 (358)
....|-.++.+++++...--..+|+... ...+...+-.|.++.++++++.++-...= |.... +.-++.+.-+|
T Consensus 6 ~Fn~HP~lm~~G~i~l~geaiL~~~~~~--~~~k~~~k~~H~~L~~la~~~~~~Gl~av---~~~h~--~~~~~hf~SlH 78 (143)
T cd08763 6 QFNVHPLCMVLGLVFLCGEALLVYRVFR--NETKRSTKILHGLLHIMALVISLVGLVAV---FDYHQ--ANGYPDMYSLH 78 (143)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhcccc--ccccchhHHHHHHHHHHHHHHHHHHHHHH---HHHcc--ccCCCccccHH
Confidence 4568999999999987776677776444 34566678899999999998876433321 22222 12236788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCchhHHH---HHHHHHHHHHHHhh
Q psy8990 292 VFCGVSIFIMSSCAVLTGLLEKAIFTLSKDYASSGEGFLM---NFIGLLVILYTILI 345 (358)
Q Consensus 292 ~f~Gl~ifvLaiaT~llGL~eK~~f~~~~~y~~~~e~~l~---N~lGl~li~~g~lV 345 (358)
.++|+.++++-..+.+.|+..- -. ++...+....+. -+.|+.+.+.++..
T Consensus 79 swlGl~t~~L~~lQ~~~G~~~f---~~-P~~~~~~r~~~~p~H~~~G~~~f~la~~t 131 (143)
T cd08763 79 SWCGILTFVLYFLQWLIGFSFF---LF-PGASFTLRSQYKPLHEFFGRALFLSSVGT 131 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---Hc-CCCchHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999643 22 122221112222 34677666655543
No 30
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=91.43 E-value=0.089 Score=36.78 Aligned_cols=32 Identities=25% Similarity=0.515 Sum_probs=26.5
Q ss_pred CCcchhhHHHHHHHHHHHHHhhhhheeehccc
Q psy8990 246 PNLYTLHSWIGLLTVILYCSQYVVGFISFMYP 277 (358)
Q Consensus 246 pHFySLHSWLGLiTviLf~lQ~l~Gf~sFL~P 277 (358)
..+..+|.|+|+++-+++++-.+.|.+..+.|
T Consensus 2 r~~~~~H~W~Gl~~g~~l~~~~~tG~~~~f~~ 33 (37)
T PF13706_consen 2 RILRKLHRWLGLILGLLLFVIFLTGAVMVFRD 33 (37)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 35678999999999999999999998766644
No 31
>PRK11513 cytochrome b561; Provisional
Probab=86.08 E-value=4.3 Score=36.87 Aligned_cols=92 Identities=14% Similarity=0.202 Sum_probs=56.1
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCcchhhHHHHHHHHHHHHHhhhhheeehcccCcchh----hhhhh
Q psy8990 212 LKLSHACLHGVILILVLFGLVAAFDSHNFAVPPKPNLYTLHSWIGLLTVILYCSQYVVGFISFMYPGIADA----LRGVL 287 (358)
Q Consensus 212 ~K~iH~iLq~lAlilalIGlvAIf~nhn~~~~gipHFySLHSWLGLiTviLf~lQ~l~Gf~sFL~P~~~~~----~Ra~l 287 (358)
.+.+||.+=.+-+.....|....... +...+.++++|-.+|++++.++++-.+..+. .--|..+.. .|..-
T Consensus 9 ~~~lHWl~a~li~~~~~~~~~~~~~~----~~~~~~~~~~H~s~G~~vl~L~v~Rl~~r~~-~~~P~~~~~~~~~~~~~A 83 (176)
T PRK11513 9 QIGIHWLVFLLVIVAYCAMEFRGFFP----RSDRPLINMIHVSCGISILVLMVVRLLLRLK-YPTPPIVPKPKPMMTGLA 83 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccc----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCCCCHHHHHHH
Confidence 38899965443333333333221111 1123457799999999999999999999984 333332221 12222
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Q psy8990 288 MPYHVFCGVSIFIMSSCAVLTGLLE 312 (358)
Q Consensus 288 ~P~H~f~Gl~ifvLaiaT~llGL~e 312 (358)
+-.| .+.|++-++..++|+.-
T Consensus 84 ~~~H----~~LY~lli~~plsG~~~ 104 (176)
T PRK11513 84 HLGH----LVIYLLFIALPVIGLVM 104 (176)
T ss_pred HHHH----HHHHHHHHHHHHHHHHH
Confidence 3345 67888888888899864
No 32
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=84.24 E-value=9.9 Score=33.05 Aligned_cols=99 Identities=18% Similarity=0.129 Sum_probs=63.7
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCc--chhhHHHHHHHHHHHHHhhhhheeehcccCcch--------
Q psy8990 212 LKLSHACLHGVILILVLFGLVAAFDSHNFAVPPKPNL--YTLHSWIGLLTVILYCSQYVVGFISFMYPGIAD-------- 281 (358)
Q Consensus 212 ~K~iH~iLq~lAlilalIGlvAIf~nhn~~~~gipHF--ySLHSWLGLiTviLf~lQ~l~Gf~sFL~P~~~~-------- 281 (358)
.+..||+.=.+-+++.+.|+..-+..+. ....... ..+|-++|++...+.+.=.+.. .....|....
T Consensus 6 ~r~~HW~~a~~~i~l~~tG~~~~~~~~~--~~~~~~~~~~~~H~~~G~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~ 82 (182)
T PF01292_consen 6 TRILHWLNALSFIALIATGLWIHFPPPG--LYFGDFGGVRNWHVIAGLLLFALLIFRLLWR-WRRLFPWSDDVFFQVKNY 82 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccc--ccccccchHHhHHHHHHHHHHHHHHHHHHHH-HHhhcccchhhHHHHHHH
Confidence 3789999999999999999988776665 2222222 7899999999988876665555 1111111100
Q ss_pred ---------hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy8990 282 ---------ALRGVLMPYHVFCGVSIFIMSSCAVLTGLLEK 313 (358)
Q Consensus 282 ---------~~Ra~l~P~H~f~Gl~ifvLaiaT~llGL~eK 313 (358)
....+.-+.-+..-.+.+++.++.+++|+.-.
T Consensus 83 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iTG~~~~ 123 (182)
T PF01292_consen 83 LYFLLRGKPPPAGKYNPGQKIVHWVLYLLLLLLPITGLLLW 123 (182)
T ss_pred HHHHhcCCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00112333444566777788888888888653
No 33
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=83.64 E-value=6.2 Score=34.95 Aligned_cols=87 Identities=18% Similarity=0.217 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCcchhhHHHHHH---HHHHHHHhh-----hhheeehcccCcchhhhh
Q psy8990 214 LSHACLHGVILILVLFGLVAAFDSHNFAVPPKPNLYTLHSWIGLL---TVILYCSQY-----VVGFISFMYPGIADALRG 285 (358)
Q Consensus 214 ~iH~iLq~lAlilalIGlvAIf~nhn~~~~gipHFySLHSWLGLi---TviLf~lQ~-----l~Gf~sFL~P~~~~~~Ra 285 (358)
.+.+++.+++.++.++|+.+|-+.+. .+|-.+=++ ...+|..-+ ..|...| + .+...|.
T Consensus 6 ~l~a~~~~~s~~ll~~g~~~Ir~~~~----------~~Hr~~Ml~a~~ls~lFlv~Yl~~~~~~g~~~f--~-g~~~ir~ 72 (133)
T PF04238_consen 6 DLNAVLNAISAVLLLIGWYFIRRGRI----------KLHRKLMLTAFVLSALFLVSYLYYHFLGGSTPF--G-GPGWIRP 72 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc--C-CCccHHH
Confidence 46789999999999999999964333 244433222 222222222 2232222 1 2334555
Q ss_pred hh---hhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy8990 286 VL---MPYHVFCGVSIFIMSSCAVLTGLLEK 313 (358)
Q Consensus 286 ~l---~P~H~f~Gl~ifvLaiaT~llGL~eK 313 (358)
.+ .-.|...-.++..+...|...|+.++
T Consensus 73 ~Y~~iL~~Hi~LA~~~~pL~l~tl~~a~~~~ 103 (133)
T PF04238_consen 73 VYLFILISHIILAIVALPLVLYTLYRALRGR 103 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33 44799999999999999999999864
No 34
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=81.42 E-value=2.3 Score=28.91 Aligned_cols=28 Identities=29% Similarity=0.291 Sum_probs=25.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy8990 284 RGVLMPYHVFCGVSIFIMSSCAVLTGLL 311 (358)
Q Consensus 284 Ra~l~P~H~f~Gl~ifvLaiaT~llGL~ 311 (358)
|+....+|++.|+.+.+..+.-+++|+.
T Consensus 2 r~~~~~~H~~~g~~~~~~ll~~~lTG~~ 29 (34)
T PF13172_consen 2 RKFWRKIHRWLGLIAAIFLLLLALTGAL 29 (34)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778899999999999999999999975
No 35
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=80.04 E-value=13 Score=33.25 Aligned_cols=94 Identities=14% Similarity=0.147 Sum_probs=65.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCcchhhHHHHHHHHHHHHHhhhhheeehcccCcchhhhhhhhhh
Q psy8990 211 GLKLSHACLHGVILILVLFGLVAAFDSHNFAVPPKPNLYTLHSWIGLLTVILYCSQYVVGFISFMYPGIADALRGVLMPY 290 (358)
Q Consensus 211 ~~K~iH~iLq~lAlilalIGlvAIf~nhn~~~~gipHFySLHSWLGLiTviLf~lQ~l~Gf~sFL~P~~~~~~Ra~l~P~ 290 (358)
.....|-.++.+++++...=-..+|+.- +..+..-+..|.++=++++++.++=.. ..|.+.. ..-++.+.-+
T Consensus 6 ~~Fn~HP~lM~~gfi~l~~eAiL~~r~~---~~~k~~~k~iH~~l~~la~~~~vvGl~---avf~~~~--~~~~~~~~Sl 77 (144)
T cd08766 6 LIFNVHPVLMVIGFIFLAGEAILAYKTV---PGSREVQKAVHLTLHLVALVLGIVGIY---AAFKFHN--EVGIPNLYSL 77 (144)
T ss_pred ceeeccHHHHHHHHHHHHHHHHHHhhcc---ccccchhHHHHHHHHHHHHHHHHHHHH---HHHHHhc--ccCccccccH
Confidence 4467899999999877665445556632 223445567999998888887664332 1222221 2223567889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q psy8990 291 HVFCGVSIFIMSSCAVLTGLLE 312 (358)
Q Consensus 291 H~f~Gl~ifvLaiaT~llGL~e 312 (358)
|.+.|+.++++-....+.|+..
T Consensus 78 HSwlGl~t~~L~~lQ~~~G~~~ 99 (144)
T cd08766 78 HSWLGIGTISLFGLQWLFGFVT 99 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999975
No 36
>TIGR02125 CytB-hydogenase Ni/Fe-hydrogenase, b-type cytochrome subunit. This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.
Probab=76.86 E-value=14 Score=33.21 Aligned_cols=100 Identities=16% Similarity=0.183 Sum_probs=60.7
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhccCCCCCC------CCCcchhhHHHHHHHHHHHHHhhhhheeeh---------cc
Q psy8990 212 LKLSHACLHGVILILVLFGLVAAFDSHNFAVPP------KPNLYTLHSWIGLLTVILYCSQYVVGFISF---------MY 276 (358)
Q Consensus 212 ~K~iH~iLq~lAlilalIGlvAIf~nhn~~~~g------ipHFySLHSWLGLiTviLf~lQ~l~Gf~sF---------L~ 276 (358)
.+..||+.=++-+++.+.|+......... ..+ ...++.+|-++|++.+++.+.=.+.++..- ..
T Consensus 7 ~R~~HW~~a~~~i~l~~tG~~~~~~~~~~-~~~~~~~~~~~~~~~~H~~~G~~~~~l~l~rl~~~~~~~~~~~~r~~~~~ 85 (211)
T TIGR02125 7 VRLFHWVRALAIFVLIVTGFYIAYPFLSP-PSGEAVHFLQGYIRFVHFAAGFVLIAVLLFRVYLAFVGKDSRYERFSFRD 85 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcCC-CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHhhcC
Confidence 37889988888888888898765432210 001 123568999999999888876655554320 00
Q ss_pred cCcchhh-hh---------------hhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy8990 277 PGIADAL-RG---------------VLMPYHVFCGVSIFIMSSCAVLTGLLE 312 (358)
Q Consensus 277 P~~~~~~-Ra---------------~l~P~H~f~Gl~ifvLaiaT~llGL~e 312 (358)
|...+.+ +. ...+.-+..-.+++++.++..++|+.-
T Consensus 86 ~~~~~~~~~~~~~y~~~~~~~~~~~~~n~~~k~~~~~l~~~~~~~~lTG~~~ 137 (211)
T TIGR02125 86 PLNPKAWIKQLRWYLFLGKHPHKKGGYNPLQFVAYFGFIVLILFMILTGLAL 137 (211)
T ss_pred CCCHHHHHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 00 113455666777888888899999753
No 37
>COG3038 CybB Cytochrome B561 [Energy production and conversion]
Probab=75.48 E-value=15 Score=34.37 Aligned_cols=94 Identities=19% Similarity=0.187 Sum_probs=68.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCcchhhHHHHHHHHHHHHHhhhhheeehcccCc----chhhhhh
Q psy8990 211 GLKLSHACLHGVILILVLFGLVAAFDSHNFAVPPKPNLYTLHSWIGLLTVILYCSQYVVGFISFMYPGI----ADALRGV 286 (358)
Q Consensus 211 ~~K~iH~iLq~lAlilalIGlvAIf~nhn~~~~gipHFySLHSWLGLiTviLf~lQ~l~Gf~sFL~P~~----~~~~Ra~ 286 (358)
....+||..-.+-+...+.|....+..+. ....-.++.+|=.+|+.++.+.++-.+-.+.. --|.. ++..|..
T Consensus 11 ~~i~lHWl~allv~~~~~~g~~~~~~~~~--~~~~~~~~~~Hks~Gi~vl~L~v~Rl~wrl~~-~~p~~~~~~~~~~~~a 87 (181)
T COG3038 11 VQIALHWLMALLVIGAFALGELMGFLPRG--PGLYFLLYELHKSIGILVLALMVLRLLWRLRN-PAPPIVPGPPPWQRKA 87 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCCCCCCChHHHHH
Confidence 34789999999999999999999988877 44556899999999999999999998877743 22221 2223344
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Q psy8990 287 LMPYHVFCGVSIFIMSSCAVLTGLL 311 (358)
Q Consensus 287 l~P~H~f~Gl~ifvLaiaT~llGL~ 311 (358)
-+-.| .++|++-++--++|+.
T Consensus 88 A~~~H----l~LY~l~lalPlsG~l 108 (181)
T COG3038 88 AKLGH----LALYLLMLALPLSGYL 108 (181)
T ss_pred HHHHH----HHHHHHHHHHHHHHHH
Confidence 45556 4566777777777743
No 38
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=74.17 E-value=11 Score=32.63 Aligned_cols=55 Identities=16% Similarity=0.205 Sum_probs=39.6
Q ss_pred HHHHHHHHhhhhheeehc---ccCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy8990 258 LTVILYCSQYVVGFISFM---YPGIADALRGVLMPYHVFCGVSIFIMSSCAVLTGLLE 312 (358)
Q Consensus 258 iTviLf~lQ~l~Gf~sFL---~P~~~~~~Ra~l~P~H~f~Gl~ifvLaiaT~llGL~e 312 (358)
+..+++.+|.+.|+..+. ........++..+-+|..+|++..++.+.=...++.+
T Consensus 14 ~~al~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~ 71 (188)
T PF00033_consen 14 LNALLFILLLITGLYLMFPFWWLAGGFPGRQLLRWLHFSLGIVFLALFLLRILWRLFS 71 (188)
T ss_dssp HHHHHHHHHHHHHHHHH-TTGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556666777777775442 1112233456788899999999999999999999887
No 39
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=71.97 E-value=12 Score=32.61 Aligned_cols=51 Identities=16% Similarity=0.240 Sum_probs=34.7
Q ss_pred HHHHHHHHhhhhheeehcccCcchhhhhh--hhhhhHHHHHHHHHHHHHHHHHH
Q psy8990 258 LTVILYCSQYVVGFISFMYPGIADALRGV--LMPYHVFCGVSIFIMSSCAVLTG 309 (358)
Q Consensus 258 iTviLf~lQ~l~Gf~sFL~P~~~~~~Ra~--l~P~H~f~Gl~ifvLaiaT~llG 309 (358)
+.++++..|++.|+..+.-+.. ...... .+.+|..+|.+.+.+.+.-+...
T Consensus 12 ~~a~~~i~l~~tG~~~~~~~~~-~~~~~~~~~~~~H~~~G~~~~~~~~~~l~~~ 64 (182)
T PF01292_consen 12 LNALSFIALIATGLWIHFPPPG-LYFGDFGGVRNWHVIAGLLLFALLIFRLLWR 64 (182)
T ss_pred HHHHHHHHHHHHHHHHhccccc-ccccccchHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888854332221 111212 47889999999999998888877
No 40
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=71.30 E-value=42 Score=28.47 Aligned_cols=89 Identities=17% Similarity=0.261 Sum_probs=57.3
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCcchhhHHHHHHHHHHHHHhhhhheeehcccCcchhhhhhh
Q psy8990 208 GKKGLKLSHACLHGVILILVLFGLVAAFDSHNFAVPPKPNLYTLHSWIGLLTVILYCSQYVVGFISFMYPGIADALRGVL 287 (358)
Q Consensus 208 ~k~~~K~iH~iLq~lAlilalIGlvAIf~nhn~~~~gipHFySLHSWLGLiTviLf~lQ~l~Gf~sFL~P~~~~~~Ra~l 287 (358)
+++..-+.|.+++.+|+++.. =+..++.+-+ .+||--.=++..++..+-+.+|.. +-+ ..+.+
T Consensus 13 ~~~~~l~~Hi~lm~la~~il~-Pi~lvL~~~~---------sr~~~~~q~~~~~l~~~g~~~g~~---~~~----~~p~l 75 (105)
T PF10348_consen 13 PHRSALYAHIVLMTLAWVILY-PIGLVLGNAR---------SRWHLPVQTVFLVLMILGLFLGSV---YNG----STPDL 75 (105)
T ss_pred CchHHHHHHHHHHHHHHHHHH-HHHHHHHHcc---------chHHHHHHHHHHHHHHHHHHHHHH---Hhc----CCCCC
Confidence 566778899999999987654 2233343332 236665555555555555555542 111 11224
Q ss_pred hh--hhHHHHHHHHHHHHHHHHHHHHHH
Q psy8990 288 MP--YHVFCGVSIFIMSSCAVLTGLLEK 313 (358)
Q Consensus 288 ~P--~H~f~Gl~ifvLaiaT~llGL~eK 313 (358)
.| .|.-+|.+++++.++..+.|+..|
T Consensus 76 yp~n~H~k~g~il~~l~~~q~~~gv~~~ 103 (105)
T PF10348_consen 76 YPNNAHGKMGWILFVLMIVQVILGVILK 103 (105)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 899999999999999999999766
No 41
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=71.24 E-value=5.6 Score=27.75 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=25.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy8990 284 RGVLMPYHVFCGVSIFIMSSCAVLTGLL 311 (358)
Q Consensus 284 Ra~l~P~H~f~Gl~ifvLaiaT~llGL~ 311 (358)
|+.+..+|++.|+++-++-..-+++|..
T Consensus 1 rr~~~~~H~W~Gl~~g~~l~~~~~tG~~ 28 (37)
T PF13706_consen 1 RRILRKLHRWLGLILGLLLFVIFLTGAV 28 (37)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 5678899999999999999999999975
No 42
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=67.89 E-value=9.1 Score=33.74 Aligned_cols=95 Identities=19% Similarity=0.245 Sum_probs=59.2
Q ss_pred eecccCCCCcchhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCcchhhHHHHHHHHHHHHHhhhhheeehcccCcch
Q psy8990 202 RSLRNYGKKGLKLSHACLHGVILILVLFGLVAAFDSHNFAVPPKPNLYTLHSWIGLLTVILYCSQYVVGFISFMYPGIAD 281 (358)
Q Consensus 202 r~~~~~~k~~~K~iH~iLq~lAlilalIGlvAIf~nhn~~~~gipHFySLHSWLGLiTviLf~lQ~l~Gf~sFL~P~~~~ 281 (358)
|++=.++++..+.+|+++..+..+++++.++..|.+-. ++++| .|=.++++.+.... ...++.+||.....
T Consensus 17 rPLFGE~~~r~riinliiG~vT~l~VLvtii~afvf~~--~~p~p----~~iffavcI~l~~~---s~~lLI~WYR~gdl 87 (118)
T PF10856_consen 17 RPLFGETSARDRIINLIIGAVTSLFVLVTIISAFVFPQ--DPPKP----LHIFFAVCILLICI---SAILLIFWYRQGDL 87 (118)
T ss_pred CcccCCCCcccEEEEeehHHHHHHHHHHHHhheEEecC--CCCCc----eEEehHHHHHHHHH---HHHhheeehhcCCC
Confidence 44434555566799999999999999999988888776 55555 44455554444443 33446778865332
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8990 282 ALRGVLMPYHVFCGVSIFIMSSCAVLTGLLEKA 314 (358)
Q Consensus 282 ~~Ra~l~P~H~f~Gl~ifvLaiaT~llGL~eK~ 314 (358)
+-| +=.+++.+....++++++-+.
T Consensus 88 ~Pk---------fr~li~~~~~~ivllci~anl 111 (118)
T PF10856_consen 88 DPK---------FRYLIYYNCFSIVLLCICANL 111 (118)
T ss_pred Chh---------HHHHHHHHHHHHHHHHHhhee
Confidence 222 113455555566666665443
No 43
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=67.10 E-value=15 Score=29.42 Aligned_cols=60 Identities=20% Similarity=0.254 Sum_probs=40.0
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhh--ccCC------CCCCCCCcchhhHHHHHHHHHHHHHhhhhhe
Q psy8990 212 LKLSHACLHGVILILVLFGLVAAFD--SHNF------AVPPKPNLYTLHSWIGLLTVILYCSQYVVGF 271 (358)
Q Consensus 212 ~K~iH~iLq~lAlilalIGlvAIf~--nhn~------~~~gipHFySLHSWLGLiTviLf~lQ~l~Gf 271 (358)
.+.+=.+.=.+.+++.+.|++.-+. .|+. ..++....+.+|..+|+.+..+.++-.+-|+
T Consensus 16 G~~iv~~~al~~l~~~isGl~l~~p~~~~~~~~~r~~~~~~~r~~~dlH~~~G~~~~~~ll~~a~TG~ 83 (88)
T PF13703_consen 16 GRWIVGILALLLLLLLISGLYLWWPRRWRWFFSLRPKRSKSKRRWFDLHRVLGLWFLPFLLVIALTGL 83 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhcCcccccccCCCCccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777778888888887753 1110 0111222677999999999888888888886
No 44
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=64.67 E-value=95 Score=26.92 Aligned_cols=108 Identities=16% Similarity=0.210 Sum_probs=63.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCcchhhHHHHHHHHHHHHHhhhhheeehcccCcchhhhhhhhhhhH
Q psy8990 213 KLSHACLHGVILILVLFGLVAAFDSHNFAVPPKPNLYTLHSWIGLLTVILYCSQYVVGFISFMYPGIADALRGVLMPYHV 292 (358)
Q Consensus 213 K~iH~iLq~lAlilalIGlvAIf~nhn~~~~gipHFySLHSWLGLiTviLf~lQ~l~Gf~sFL~P~~~~~~Ra~l~P~H~ 292 (358)
+.+.++-...|.++++.|+.-.+...+ .| +.++-+-..++|++..+.--..+..++...-+..
T Consensus 4 ~~~r~~~~~~~~~~i~~gi~~l~~~~~-----------~~------~~i~~~Y~i~fg~ll~~~E~~~~~i~~~~~FL~~ 66 (136)
T PF08507_consen 4 NIFRILNIIAGILLILAGILSLFNSFS-----------FS------SFILGVYCILFGLLLILAEFRWPFIRKYFGFLYS 66 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh-----------HH------HHHHHHHHHHHHHHHHHHHhccHHHHHhHhHHHh
Confidence 555666667777777777766655322 22 3333333455666554443223346677777899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHhhee
Q psy8990 293 FCGVSIFIMSSCAVLTGLLEKAIFTLSKDYASSGEGFLMNFIGLLVILYTILIGY 347 (358)
Q Consensus 293 f~Gl~ifvLaiaT~llGL~eK~~f~~~~~y~~~~e~~l~N~lGl~li~~g~lV~~ 347 (358)
+.|+.+|.+-+++...+.. .+. .--+.++=++|++.++.+..-.-
T Consensus 67 ~~GRGlfyif~G~l~~~~~---~~~-------~i~g~~~~~~G~~~i~l~~~~~~ 111 (136)
T PF08507_consen 67 YIGRGLFYIFLGTLCLGQS---ILS-------IIIGLLLFLVGVIYIILGFFCPI 111 (136)
T ss_pred HHHHHHHHHHHHHHHHhhH---HHH-------HHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999988888887761 111 11144555556655555554433
No 45
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=63.33 E-value=59 Score=29.62 Aligned_cols=97 Identities=14% Similarity=0.103 Sum_probs=65.6
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCcchhhHHHHHHHHHHHHHhhhhheeehcccCcchhhhhhhhhhh
Q psy8990 212 LKLSHACLHGVILILVLFGLVAAFDSHNFAVPPKPNLYTLHSWIGLLTVILYCSQYVVGFISFMYPGIADALRGVLMPYH 291 (358)
Q Consensus 212 ~K~iH~iLq~lAlilalIGlvAIf~nhn~~~~gipHFySLHSWLGLiTviLf~lQ~l~Gf~sFL~P~~~~~~Ra~l~P~H 291 (358)
....|=.++.+++++...=-..+|+.-......+..-+..|-++=++++++.++-... .|.+... .-.+.+.-+|
T Consensus 11 ~Fn~HPlLm~~Gfi~l~geAiL~yr~~~~~~~~k~~~k~iH~~L~~~a~~~~i~Gl~a---vf~~hn~--~~~~~fySlH 85 (153)
T cd08765 11 EFNWHPVLMVIGFIFIQGIAIIVYRLPWTWKCSKLLMKLIHAGLHILAFILAIISVVA---VFVFHNA--KNIPNMYSLH 85 (153)
T ss_pred eeechHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHH---HHHHccc--cCCCccccHH
Confidence 4568999999999884444445554221001235566889999888887776543221 2222222 2346788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8990 292 VFCGVSIFIMSSCAVLTGLLEK 313 (358)
Q Consensus 292 ~f~Gl~ifvLaiaT~llGL~eK 313 (358)
.+.|+.++++-....+.|+..-
T Consensus 86 SwlGl~t~~l~~lQ~~~Gf~~f 107 (153)
T cd08765 86 SWVGLAAVILYPLQLVLGISVY 107 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999754
No 46
>COG3038 CybB Cytochrome B561 [Energy production and conversion]
Probab=61.84 E-value=13 Score=34.79 Aligned_cols=54 Identities=17% Similarity=0.192 Sum_probs=39.2
Q ss_pred HHHHHHHhhhhheeehcccCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy8990 259 TVILYCSQYVVGFISFMYPGIADALRGVLMPYHVFCGVSIFIMSSCAVLTGLLEK 313 (358)
Q Consensus 259 TviLf~lQ~l~Gf~sFL~P~~~~~~Ra~l~P~H~f~Gl~ifvLaiaT~llGL~eK 313 (358)
+..++..|++.|...-..|+.+ ..|..++.+|..+|+.++++.+.=++..+.+.
T Consensus 19 ~allv~~~~~~g~~~~~~~~~~-~~~~~~~~~Hks~Gi~vl~L~v~Rl~wrl~~~ 72 (181)
T COG3038 19 MALLVIGAFALGELMGFLPRGP-GLYFLLYELHKSIGILVLALMVLRLLWRLRNP 72 (181)
T ss_pred HHHHHHHHHHHHHHHHHcccCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3445556666666555566543 36678899999999999999998888777543
No 47
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=60.18 E-value=32 Score=27.59 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=22.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Q psy8990 287 LMPYHVFCGVSIFIMSSCAVLTGLL 311 (358)
Q Consensus 287 l~P~H~f~Gl~ifvLaiaT~llGL~ 311 (358)
...+|+..|+.+.++...-+++|..
T Consensus 60 ~~dlH~~~G~~~~~~ll~~a~TG~~ 84 (88)
T PF13703_consen 60 WFDLHRVLGLWFLPFLLVIALTGLF 84 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5669999999999999999999985
No 48
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=57.87 E-value=91 Score=29.25 Aligned_cols=96 Identities=17% Similarity=0.158 Sum_probs=66.0
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCcchhhHHHHHHHHHHHHHhhhhheeehcccCcchhhhhhhhhhh
Q psy8990 212 LKLSHACLHGVILILVLFGLVAAFDSHNFAVPPKPNLYTLHSWIGLLTVILYCSQYVVGFISFMYPGIADALRGVLMPYH 291 (358)
Q Consensus 212 ~K~iH~iLq~lAlilalIGlvAIf~nhn~~~~gipHFySLHSWLGLiTviLf~lQ~l~Gf~sFL~P~~~~~~Ra~l~P~H 291 (358)
....|-.++.+++++...=...+|+.-......+.-.+..|..+=.+++++-++-...- |-+... .-.+.+.-+|
T Consensus 34 ~Fn~HP~lMv~Gfi~L~geAiL~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~vvGl~av---f~~hn~--~~~~nlySlH 108 (179)
T cd08762 34 NFNWHPVLMVTGMVVLYGNAALVYRIPLTWGGPKLPWKLLHAGLLLLAFILTVIGLCAV---FNFHNV--HHTANLYSLH 108 (179)
T ss_pred ceeehHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHH---HHhccc--cCccchhhHH
Confidence 57899999999999885555556652210012333357899999888887765433322 333222 2236777899
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8990 292 VFCGVSIFIMSSCAVLTGLLE 312 (358)
Q Consensus 292 ~f~Gl~ifvLaiaT~llGL~e 312 (358)
.+.|+.+.++-....+.|+..
T Consensus 109 SWlGl~t~~Lf~lQ~~~Gf~~ 129 (179)
T cd08762 109 SWVGICTVALFTCQWVMGFTS 129 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999975
No 49
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=56.58 E-value=43 Score=31.46 Aligned_cols=58 Identities=12% Similarity=0.226 Sum_probs=43.0
Q ss_pred CCCCcchhhHHHHHHHHHHHHHhhhhheeehcccCcchhhhhhhhhhhHHHHHHHHHHHHHHHH
Q psy8990 244 PKPNLYTLHSWIGLLTVILYCSQYVVGFISFMYPGIADALRGVLMPYHVFCGVSIFIMSSCAVL 307 (358)
Q Consensus 244 gipHFySLHSWLGLiTviLf~lQ~l~Gf~sFL~P~~~~~~Ra~l~P~H~f~Gl~ifvLaiaT~l 307 (358)
|.+-..+.--..|..++.++.++.+.+-+.-+.+ ..++.++||..|+..|..+..=..
T Consensus 36 g~~p~~~~~~~tG~~Al~llll~l~l~pL~~l~~------~~~l~~~RR~LGl~af~~a~lH~~ 93 (205)
T PRK05419 36 GADPVKDIEHFTGLWALVFLLATLAVTPLRRLTG------QPLLIRTRRLLGLWAFFYATLHLL 93 (205)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667778899999999999988765322211 136899999999999998777654
No 50
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=55.92 E-value=48 Score=26.79 Aligned_cols=55 Identities=15% Similarity=0.234 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhhhhheeehcccCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy8990 255 IGLLTVILYCSQYVVGFISFMYPGIADALRGVLMPYHVFCGVSIFIMSSCAVLTG 309 (358)
Q Consensus 255 LGLiTviLf~lQ~l~Gf~sFL~P~~~~~~Ra~l~P~H~f~Gl~ifvLaiaT~llG 309 (358)
+|.+.++++.++.+.+.=.-..........++...+|+..|+.+++++++=...=
T Consensus 1 ~G~~a~~~l~~~~~l~~R~~~l~~~~~~~~~~~~~~Hr~lg~~~~~~~~~H~~~~ 55 (125)
T PF01794_consen 1 LGILAFALLPLVFLLGLRNSPLARLTGISFDRLLRFHRWLGRLAFFLALLHGVLY 55 (125)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888888866200000000111113455599999999999887764433
No 51
>PF09990 DUF2231: Predicted membrane protein (DUF2231); InterPro: IPR019251 This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=55.40 E-value=55 Score=26.84 Aligned_cols=47 Identities=23% Similarity=0.289 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhccCCCCCCCCCcchhhHHHHHHHHHHHHH
Q psy8990 217 ACLHGVILILVLFGLVAAFDSHNFAVPPKPNLYTLHSWIGLLTVILYCS 265 (358)
Q Consensus 217 ~iLq~lAlilalIGlvAIf~nhn~~~~gipHFySLHSWLGLiTviLf~l 265 (358)
.+--..+++.++.|+.....-++ +....+--..|.++|+.++.++.+
T Consensus 10 ~~G~l~~~~A~~~G~~d~~~~~~--~~~~~~~~~~H~~~~~~~~~l~~~ 56 (104)
T PF09990_consen 10 VLGLLGAIVAVLTGFVDLLTVER--GPPAHRVAWLHAILGLVALGLFLL 56 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcC--cchhHHHHHHHHHHHHHHHHHHHH
Confidence 34445667777788877777644 444556668999999999999987
No 52
>PF06197 DUF998: Protein of unknown function (DUF998); InterPro: IPR009339 This is a family of proteins with no known function.
Probab=55.19 E-value=1.3e+02 Score=26.18 Aligned_cols=14 Identities=14% Similarity=0.368 Sum_probs=8.0
Q ss_pred hhHHHHHHHHHHHH
Q psy8990 251 LHSWIGLLTVILYC 264 (358)
Q Consensus 251 LHSWLGLiTviLf~ 264 (358)
+|...+.+.++...
T Consensus 104 ~H~~~a~~~f~~~~ 117 (184)
T PF06197_consen 104 VHVLAAILAFLALA 117 (184)
T ss_pred hHHHHHHHHHHHHH
Confidence 67666665554444
No 53
>COG2322 Predicted membrane protein [Function unknown]
Probab=52.96 E-value=49 Score=31.05 Aligned_cols=102 Identities=20% Similarity=0.275 Sum_probs=66.0
Q ss_pred ccchhhHHHhhhhccccccCCCccchhhhhceeeeeeehhhhhhccCCCCCCCCCCCCceeeEeecccCCCCcchhHHHH
Q psy8990 139 EFNWHPLLMTIGLVSKDYASSGEGFLMNFIGLLVILYTILIGYLLHKPSYKRYPRPEDVNLIYRSLRNYGKKGLKLSHAC 218 (358)
Q Consensus 139 ~FnwHPlLMtlGfv~~~~~~~~~~~~~~~~g~~~~l~g~~~~~~~~~~~~~~~~~~~eaiL~yr~~~~~~k~~~K~iH~i 218 (358)
.-++|-=.|..++. +....+|.|+....-..+++-+.++ .||..-. ..-..|.+
T Consensus 71 ~i~~Hk~aMltA~~--------------------l~l~FlvlYltr~~l~~~t~f~~~G--~~k~~Y~----~iL~~Hi~ 124 (177)
T COG2322 71 NIEKHKRAMLTAFT--------------------LALVFLVLYLTRHGLGGETAFGGTG--IYKGIYF----FILITHII 124 (177)
T ss_pred cHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHhccccccCCCCe--eeehHHH----HHHHHHHH
Confidence 46899999999998 5555577787655444334333344 4443111 11345777
Q ss_pred HHHHHHHHHHHHHhhhhhccCCCCCCCCCcchhhHHHHHHHHHHHHHhhhhheeehcc
Q psy8990 219 LHGVILILVLFGLVAAFDSHNFAVPPKPNLYTLHSWIGLLTVILYCSQYVVGFISFMY 276 (358)
Q Consensus 219 Lq~lAlilalIGlvAIf~nhn~~~~gipHFySLHSWLGLiTviLf~lQ~l~Gf~sFL~ 276 (358)
|-++.+.+++..++-.++.+ ++-|-.+|=.|..+.....+.|.+.+++
T Consensus 125 LA~i~vPLal~al~~a~~~~----------~~rHrki~r~ta~~Wlyva~tGv~VYLm 172 (177)
T COG2322 125 LAAINVPLALYALILAWKGL----------YERHRKIGRWTAPLWLYVALTGVVVYLM 172 (177)
T ss_pred HHHHhhhHHHHHHHHHhcch----------hhhhheeeehhhHHHHHHHHHHHHHhhe
Confidence 76666666666665555533 6678888888888888888888877754
No 54
>PTZ00127 cytochrome c oxidase assembly protein; Provisional
Probab=49.14 E-value=2.9e+02 Score=28.63 Aligned_cols=56 Identities=13% Similarity=0.001 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhhhhhe-eeh----------------cccCcch----hh------hhhhhhhhHHHHHHHHHHHHHH
Q psy8990 253 SWIGLLTVILYCSQYVVGF-ISF----------------MYPGIAD----AL------RGVLMPYHVFCGVSIFIMSSCA 305 (358)
Q Consensus 253 SWLGLiTviLf~lQ~l~Gf-~sF----------------L~P~~~~----~~------Ra~l~P~H~f~Gl~ifvLaiaT 305 (358)
-++..+++++.++|.+.|. ++- +.|.... .. +..+--.||..+++++++.++.
T Consensus 257 r~l~~~~~~l~~lqI~lGa~Vag~~AGlac~~wP~c~g~~iP~~~~~~~~~~~~~~e~~~~vqf~HR~~A~l~~l~~l~l 336 (403)
T PTZ00127 257 RLLARGLFALVFLTAMSGAFVAGNDAGLAYNTWPKMGGKFVPDDVHNFVPWYKNFFENTAVVQFNHRVLAYLTFLSSLGL 336 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCCCchhhhhhhhHhhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 3566777788888988885 332 1222100 01 1123447999999887766554
Q ss_pred HHH
Q psy8990 306 VLT 308 (358)
Q Consensus 306 ~ll 308 (358)
+..
T Consensus 337 ~~~ 339 (403)
T PTZ00127 337 YYK 339 (403)
T ss_pred HHH
Confidence 443
No 55
>PRK10263 DNA translocase FtsK; Provisional
Probab=48.60 E-value=92 Score=37.31 Aligned_cols=63 Identities=21% Similarity=0.324 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHh--hhhhccCCCCCCCCC---cchhhHHHHHHHHH-HHHHhhhhheeehcccC
Q psy8990 216 HACLHGVILILVLFGLV--AAFDSHNFAVPPKPN---LYTLHSWIGLLTVI-LYCSQYVVGFISFMYPG 278 (358)
Q Consensus 216 H~iLq~lAlilalIGlv--AIf~nhn~~~~gipH---FySLHSWLGLiTvi-Lf~lQ~l~Gf~sFL~P~ 278 (358)
|....+++++|.+++++ +.+.+.+-.+.+..+ -...|.|+|.+=-. --++-.++|+.+|++|-
T Consensus 20 rrL~E~~gIlLlllAlfL~lALiSYsPsDPSwS~sa~~~~V~Nl~GiVGA~LAD~L~~LFGl~AYLLP~ 88 (1355)
T PRK10263 20 RRLLEALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPV 88 (1355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCccCCcccccCcccccccccchHHHHHHHHHHHHHhHHHHHHHH
Confidence 44556666666666642 233333312332221 11257777765432 22333488888888774
No 56
>PRK15006 thiosulfate reductase cytochrome B subunit; Provisional
Probab=47.90 E-value=2.7e+02 Score=27.03 Aligned_cols=55 Identities=20% Similarity=0.302 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCcchhhHHHHHHHHHHHHHhhhh
Q psy8990 213 KLSHACLHGVILILVLFGLVAAFDSHNFAVPPKPNLYTLHSWIGLLTVILYCSQYVV 269 (358)
Q Consensus 213 K~iH~iLq~lAlilalIGlvAIf~nhn~~~~gipHFySLHSWLGLiTviLf~lQ~l~ 269 (358)
+..||+.=++-+++++.|+...+..-. .........+|-|+|.+.++..++-.+.
T Consensus 74 Rl~HW~~A~~fl~L~lTGl~i~~p~~~--~~~~~~~~~iH~~~G~vf~~~~l~~~~~ 128 (261)
T PRK15006 74 RLWHWSNALLFVLLLLSGLINHFALVG--ATAVKSLVAVHEVCGFLLLACWLGFVLI 128 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccc--chhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999998664322 1122334568999998877665544443
No 57
>COG2181 NarI Nitrate reductase gamma subunit [Energy production and conversion]
Probab=47.14 E-value=15 Score=35.63 Aligned_cols=77 Identities=14% Similarity=0.173 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCcchhhHHHHHHHHHHHHHhhhhheeehcccCcchhh--hhhhhhhh
Q psy8990 214 LSHACLHGVILILVLFGLVAAFDSHNFAVPPKPNLYTLHSWIGLLTVILYCSQYVVGFISFMYPGIADAL--RGVLMPYH 291 (358)
Q Consensus 214 ~iH~iLq~lAlilalIGlvAIf~nhn~~~~gipHFySLHSWLGLiTviLf~lQ~l~Gf~sFL~P~~~~~~--Ra~l~P~H 291 (358)
.-=.+...+=++..+.|+.+++.+++ ..+..+ |..+-+. -+| +++++- +..++-. -+..++.|
T Consensus 123 ~~D~f~lilLla~~~~Gl~~~~~~~~--~~~~~~-~~~~~~~--------w~~---si~tl~-~~~~~l~a~v~~~fk~H 187 (228)
T COG2181 123 PSDIFALLLLLAQLLLGLYATPFSAQ--HADGFD-YRELVSW--------WAR---SIVTLH-GPASELVAGVPLIFKVH 187 (228)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhhccc--ccchHH-HHHHHHH--------HHH---HHHhcC-cchHhhcCCCcHHHHHH
Confidence 33444555556667788888888876 222222 2222111 233 333322 1111111 14678899
Q ss_pred HHHHHHHHHHHHHH
Q psy8990 292 VFCGVSIFIMSSCA 305 (358)
Q Consensus 292 ~f~Gl~ifvLaiaT 305 (358)
.+.|..+|.+--.|
T Consensus 188 i~lg~~l~~~~PFt 201 (228)
T COG2181 188 IVLGLTLFALFPFT 201 (228)
T ss_pred HHHHHHHHHHhhhh
Confidence 99999998875444
No 58
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=46.53 E-value=22 Score=23.65 Aligned_cols=24 Identities=21% Similarity=0.531 Sum_probs=16.1
Q ss_pred cchhhHHHHHHHHHHHHHhhhhhe
Q psy8990 248 LYTLHSWIGLLTVILYCSQYVVGF 271 (358)
Q Consensus 248 FySLHSWLGLiTviLf~lQ~l~Gf 271 (358)
|+.+|.|++.++..++.+-.+.|+
T Consensus 1 ~~~LH~w~~~i~al~~lv~~iTGl 24 (27)
T PF03929_consen 1 FNDLHKWFGDIFALFMLVFAITGL 24 (27)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 355777777777777666666665
No 59
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=46.10 E-value=1.6e+02 Score=26.16 Aligned_cols=88 Identities=16% Similarity=0.103 Sum_probs=58.0
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCcc-------------hhhHHHHHHHHHHHHHhhhhheeehc
Q psy8990 209 KKGLKLSHACLHGVILILVLFGLVAAFDSHNFAVPPKPNLY-------------TLHSWIGLLTVILYCSQYVVGFISFM 275 (358)
Q Consensus 209 k~~~K~iH~iLq~lAlilalIGlvAIf~nhn~~~~gipHFy-------------SLHSWLGLiTviLf~lQ~l~Gf~sFL 275 (358)
|+++...|--+|..|++++++=++.=...|- ..|..+|. -.|..+-.+++.+.......|+-.
T Consensus 27 r~~~~~~Hr~~Ml~a~~ls~lFlv~Yl~~~~--~~g~~~f~g~~~ir~~Y~~iL~~Hi~LA~~~~pL~l~tl~~a~~~-- 102 (133)
T PF04238_consen 27 RRGRIKLHRKLMLTAFVLSALFLVSYLYYHF--LGGSTPFGGPGWIRPVYLFILISHIILAIVALPLVLYTLYRALRG-- 102 (133)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--
Confidence 4456888999999988887765543333332 22222222 347777777777766666665511
Q ss_pred ccCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy8990 276 YPGIADALRGVLMPYHVFCGVSIFIMSSCAVLTGLL 311 (358)
Q Consensus 276 ~P~~~~~~Ra~l~P~H~f~Gl~ifvLaiaT~llGL~ 311 (358)
-..-||-.|..++..=+.++++|+.
T Consensus 103 -----------~~~~Hrki~r~t~piWlyvsvTGvv 127 (133)
T PF04238_consen 103 -----------RFTRHRKIGRWTFPIWLYVSVTGVV 127 (133)
T ss_pred -----------ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446999999999999999999975
No 60
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=45.07 E-value=17 Score=24.68 Aligned_cols=25 Identities=24% Similarity=0.598 Sum_probs=22.1
Q ss_pred cchhhHHHHHHHHHHHHHhhhhhee
Q psy8990 248 LYTLHSWIGLLTVILYCSQYVVGFI 272 (358)
Q Consensus 248 FySLHSWLGLiTviLf~lQ~l~Gf~ 272 (358)
+..+|-|+|+.+.+..++..+.|+.
T Consensus 5 ~~~~H~~~g~~~~~~ll~~~lTG~~ 29 (34)
T PF13172_consen 5 WRKIHRWLGLIAAIFLLLLALTGAL 29 (34)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5679999999999999999998873
No 61
>PRK03735 cytochrome b6; Provisional
Probab=44.47 E-value=1e+02 Score=29.51 Aligned_cols=92 Identities=20% Similarity=0.277 Sum_probs=56.0
Q ss_pred hhHHHHHHHHHHHHHhhhhheeeh--cccCcchhh-------h-----hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8990 251 LHSWIGLLTVILYCSQYVVGFISF--MYPGIADAL-------R-----GVLMPYHVFCGVSIFIMSSCAVLTGLLEKAIF 316 (358)
Q Consensus 251 LHSWLGLiTviLf~lQ~l~Gf~sF--L~P~~~~~~-------R-----a~l~P~H~f~Gl~ifvLaiaT~llGL~eK~~f 316 (358)
+==++|-++..++.+|.+.|++-. +.|...... | ..++-+|+...-+.+++...=..-|+...+
T Consensus 40 ~~~~~G~l~~~~~~iqi~TGi~L~~~Y~P~~~~A~~Sv~~I~~ev~~GwliR~~H~~gas~~~~~~~lH~~r~~~~gs-- 117 (223)
T PRK03735 40 FVYCFGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGG-- 117 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchhHHHHHHHHHcccccHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH--
Confidence 444789999999999999998544 335432211 1 244668999888888888888877776543
Q ss_pred hhcCCCCCCchh-HHHHHHHHHHHHHHHhheeee
Q psy8990 317 TLSKDYASSGEG-FLMNFIGLLVILYTILIGYLL 349 (358)
Q Consensus 317 ~~~~~y~~~~e~-~l~N~lGl~li~~g~lV~~~~ 349 (358)
|+++.|. .+.=++-+++.+...+.+|.+
T Consensus 118 -----Yk~pre~~W~~Gv~l~~l~~~~af~GY~L 146 (223)
T PRK03735 118 -----YKKPRELNWVVGVLIFFVTVGLGFTGYLL 146 (223)
T ss_pred -----HcCCCCceeHHHHHHHHHHHHHHhccccC
Confidence 4445442 222222223333444556655
No 62
>PF05940 NnrS: NnrS protein; InterPro: IPR010266 This family consists of several bacterial NnrS like proteins. NnrS is a putative haem-Cu protein (NnrS) and a member of the short-chain dehydrogenase family []. Expression of nnrS is dependent on the transcriptional regulator NnrR, which also regulates expression of genes required for the reduction of nitrite to nitrous oxide, including nirK and nor. NnrS is a haem- and copper-containing membrane protein. Genes encoding putative orthologues of NnrS are sometimes but not always found in bacteria encoding nitrite and/or nitric oxide reductase [].
Probab=44.26 E-value=85 Score=31.85 Aligned_cols=50 Identities=20% Similarity=0.394 Sum_probs=36.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhhcceeecceeecCCCCcccchhhHHHhhhhc
Q psy8990 99 RGFNPIFYFSQAVGAAIVVLVSIWTIHHRGGFTWRSNPGLEFNWHPLLMTIGLV 152 (358)
Q Consensus 99 ~~f~~~~~~a~~lgl~~vvlv~~W~~~~rgGf~w~~~~~~~FnwHPlLMtlGfv 152 (358)
..|.+.+..+.+.++.+ +..|...+.|...+.. ......||.--|..||.
T Consensus 7 ~~fRpFFl~aal~a~l~---~~lW~~~~~g~~~~~~-~~~~~~wHaheMlfGf~ 56 (379)
T PF05940_consen 7 APFRPFFLLAALYAILA---MLLWLLFLSGLLPLPS-AVPPVWWHAHEMLFGFA 56 (379)
T ss_pred CChHHHHHHHHHHHHHH---HHHHHHHHcCcccccc-cccchHHHHHHHHHHHH
Confidence 35778888887777655 6778888866665432 33457899999999998
No 63
>PF02322 Cyto_ox_2: Cytochrome oxidase subunit II; InterPro: IPR003317 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. ; GO: 0055114 oxidation-reduction process, 0016020 membrane
Probab=40.65 E-value=1.5e+02 Score=29.74 Aligned_cols=62 Identities=18% Similarity=0.201 Sum_probs=40.6
Q ss_pred CcchhhHHHHHHHHHHHHHhhhhheeehcccCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy8990 247 NLYTLHSWIGLLTVILYCSQYVVGFISFMYPGIADALRGVLMPYHVFCGVSIFIMSSCAVLTGLL 311 (358)
Q Consensus 247 HFySLHSWLGLiTviLf~lQ~l~Gf~sFL~P~~~~~~Ra~l~P~H~f~Gl~ifvLaiaT~llGL~ 311 (358)
++-|+-++++-++.+..+++ .|. .|+.-+...+.|++.+..-+..+....++.++.......
T Consensus 154 ~~l~pf~ll~Gl~~v~~~~~--~GA-~~l~~kt~g~l~~rar~~a~~~~~~~~~~~~~~~~~~~~ 215 (328)
T PF02322_consen 154 DLLSPFSLLGGLAVVALFAL--HGA-VFLALKTEGELRERARRWALRLGLAALVLFLAFALWTPF 215 (328)
T ss_pred HhccHHHHHHHHHHHHHHHH--HHH-HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34466666655555544433 343 455556667888888888888888887777766655544
No 64
>PRK10171 hydrogenase 1 b-type cytochrome subunit; Provisional
Probab=39.51 E-value=2.8e+02 Score=26.18 Aligned_cols=59 Identities=12% Similarity=0.164 Sum_probs=41.4
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhccCCCCCC-CCC------cchhhHHHHHHHHHHHHHhhhhhee
Q psy8990 212 LKLSHACLHGVILILVLFGLVAAFDSHNFAVPP-KPN------LYTLHSWIGLLTVILYCSQYVVGFI 272 (358)
Q Consensus 212 ~K~iH~iLq~lAlilalIGlvAIf~nhn~~~~g-ipH------FySLHSWLGLiTviLf~lQ~l~Gf~ 272 (358)
.+..||+.=++-+++.+.|+......-. ..+ .+. ...+|-++|.+.+.+.++-.+-|++
T Consensus 18 ~Ri~HW~~Al~i~~l~~tG~~i~~~~~~--~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~Rl~w~~~ 83 (235)
T PRK10171 18 VRIWHWLTVLCMAVLMVTGYFIGKPLPS--VSGEATYLFYMGYIRLIHFSAGMIFTVVLLMRIYWAFV 83 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcCCC--CCchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3678999999999999999876322111 111 111 1358999999999998888887774
No 65
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=38.20 E-value=3.1e+02 Score=25.43 Aligned_cols=84 Identities=12% Similarity=0.113 Sum_probs=55.2
Q ss_pred CcchhhHHHHHHHHHHHHHhhhhheeehcccCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC-C-
Q psy8990 247 NLYTLHSWIGLLTVILYCSQYVVGFISFMYPGIADALRGVLMPYHVFCGVSIFIMSSCAVLTGLLEKAIFTLSKDYA-S- 324 (358)
Q Consensus 247 HFySLHSWLGLiTviLf~lQ~l~Gf~sFL~P~~~~~~Ra~l~P~H~f~Gl~ifvLaiaT~llGL~eK~~f~~~~~y~-~- 324 (358)
.....|-.+|.+.++++.+-.+.|...-+. +..+.+..-|-+.|+.+..|-..+..+.-. ++ ++.+ .
T Consensus 78 ~~r~~H~~~g~~ll~~~~L~~lGG~~~~~~-----~~~~lf~spH~~~Gl~~~~L~~~s~al~~~---i~---~g~~~~~ 146 (175)
T PF13301_consen 78 KARDRHYRLGFALLAFMGLGALGGQLGTYR-----QNGKLFWSPHLWAGLAVVGLMAFSAALVPQ---IQ---KGNRPWA 146 (175)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcchHHHHH-----cCCCCccCchHHHHHHHHHHHHHHHHHHHH---Hc---cCCchhH
Confidence 456799999999999999999999754332 222344556999999998887777665432 11 1111 1
Q ss_pred CchhHHHHHHHHHHHHH
Q psy8990 325 SGEGFLMNFIGLLVILY 341 (358)
Q Consensus 325 ~~e~~l~N~lGl~li~~ 341 (358)
-.-....|.+.+++++.
T Consensus 147 R~lHi~lN~~~l~Lf~~ 163 (175)
T PF13301_consen 147 RRLHIYLNSLALLLFAW 163 (175)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33456677766665543
No 66
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=37.21 E-value=1.8e+02 Score=23.81 Aligned_cols=24 Identities=8% Similarity=0.045 Sum_probs=10.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHH
Q psy8990 286 VLMPYHVFCGVSIFIMSSCAVLTG 309 (358)
Q Consensus 286 ~l~P~H~f~Gl~ifvLaiaT~llG 309 (358)
|++-..-+.+++..++.++-...|
T Consensus 7 R~kN~~~w~ali~~i~l~vq~~~~ 30 (84)
T PF04531_consen 7 RFKNKAFWVALISAILLLVQQVGG 30 (84)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444
No 67
>PF10067 DUF2306: Predicted membrane protein (DUF2306); InterPro: IPR018750 Members of this family of hypothetical bacterial proteins have no known function.
Probab=35.82 E-value=76 Score=26.35 Aligned_cols=28 Identities=18% Similarity=0.127 Sum_probs=21.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy8990 284 RGVLMPYHVFCGVSIFIMSSCAVLTGLL 311 (358)
Q Consensus 284 Ra~l~P~H~f~Gl~ifvLaiaT~llGL~ 311 (358)
|++.-.+||..|++-..+.+.++++|+.
T Consensus 2 R~k~~~~HR~lGrvyv~~~~~~a~sa~~ 29 (103)
T PF10067_consen 2 RRKGPRLHRWLGRVYVAAMLISALSALF 29 (103)
T ss_pred CCCcccHHHhhhHHHHHHHHHHHHHHHH
Confidence 4556678888888888888888887775
No 68
>PRK11513 cytochrome b561; Provisional
Probab=34.05 E-value=68 Score=29.11 Aligned_cols=51 Identities=24% Similarity=0.354 Sum_probs=33.8
Q ss_pred HHHHHHHhhhhheeehcccCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy8990 259 TVILYCSQYVVGFISFMYPGIADALRGVLMPYHVFCGVSIFIMSSCAVLTGLLE 312 (358)
Q Consensus 259 TviLf~lQ~l~Gf~sFL~P~~~~~~Ra~l~P~H~f~Gl~ifvLaiaT~llGL~e 312 (358)
+.+++..|++.|...-..|. ..+..++.+|..+|+.++++.+.=+...+..
T Consensus 16 ~a~li~~~~~~~~~~~~~~~---~~~~~~~~~H~s~G~~vl~L~v~Rl~~r~~~ 66 (176)
T PRK11513 16 VFLLVIVAYCAMEFRGFFPR---SDRPLINMIHVSCGISILVLMVVRLLLRLKY 66 (176)
T ss_pred HHHHHHHHHHHHHHHcccch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34455556655543222232 2345677899999999999998888887753
No 69
>TIGR01583 formate-DH-gamm formate dehydrogenase, gamma subunit. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model.
Probab=34.03 E-value=2e+02 Score=26.35 Aligned_cols=100 Identities=19% Similarity=0.179 Sum_probs=63.7
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhccCCC---CCCCCCcchhhHHHHHHHHHHHHHhhhhheeehcccCcch-------
Q psy8990 212 LKLSHACLHGVILILVLFGLVAAFDSHNFA---VPPKPNLYTLHSWIGLLTVILYCSQYVVGFISFMYPGIAD------- 281 (358)
Q Consensus 212 ~K~iH~iLq~lAlilalIGlvAIf~nhn~~---~~gipHFySLHSWLGLiTviLf~lQ~l~Gf~sFL~P~~~~------- 281 (358)
.+..||+.-.+-+++++.|+...+..-..- ..+.+....+|-++|++.+.+++.-.+. ..-...|...+
T Consensus 9 ~r~~HW~~a~~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~~H~~~g~~~~~~~i~~~~~-~~~~~~~~~~d~~~~~~~ 87 (204)
T TIGR01583 9 DRILHWIAAISFLILVFTGFVMMFGKFFWLGVILGELWVAKNLHPFAGILFFISIIPMFLK-WWRRMIPAKYDIRWMMKV 87 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcchhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHHh
Confidence 378899988888999999998866532100 0112346679999999888777655321 11112232110
Q ss_pred -----------hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy8990 282 -----------ALRGVLMPYHVFCGVSIFIMSSCAVLTGLLE 312 (358)
Q Consensus 282 -----------~~Ra~l~P~H~f~Gl~ifvLaiaT~llGL~e 312 (358)
....++-+..++.-..++++.++.+++|+.-
T Consensus 88 ~~y~~~~~~~~p~~~kyN~~Qk~~y~~i~~~~~~~~~TGl~m 129 (204)
T TIGR01583 88 GGYLSKIKRPVPSAGKYNAGQKSWYWILVLGGFLMIITGIFM 129 (204)
T ss_pred chHhcCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0012455677888888888889999999864
No 70
>PRK09928 choline transport protein BetT; Provisional
Probab=33.76 E-value=4.9e+02 Score=29.25 Aligned_cols=58 Identities=22% Similarity=0.287 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCC------CCcc-hhhHHHHHHHHHHHHHhhhhhe
Q psy8990 213 KLSHACLHGVILILVLFGLVAAFDSHNFAVPPK------PNLY-TLHSWIGLLTVILYCSQYVVGF 271 (358)
Q Consensus 213 K~iH~iLq~lAlilalIGlvAIf~nhn~~~~gi------pHFy-SLHSWLGLiTviLf~lQ~l~Gf 271 (358)
...||.+|.=|+-+ ++|+...|-..+..++-. |=+- -.|+|+|-+.=++.++--++|+
T Consensus 144 t~FHWG~~aWAiYa-lvglalAYf~yr~~~pl~issal~pllG~ri~G~~G~~IDi~av~~tvfGi 208 (679)
T PRK09928 144 TLFHYGLTGWSMYA-LMGMALGYFSYRYNLPLTIRSALYPIFGKRINGPIGHSVDIAAVIGTIFGI 208 (679)
T ss_pred HHHHhhHHHHHHHH-HHHHHHHHHhhcCCCCCchhHhhhhhcCCCCCCCchhHHHHHHHHHHHHHH
Confidence 67899999998875 778877766655112100 1111 2578888544444444444443
No 71
>CHL00070 petB cytochrome b6
Probab=33.67 E-value=2.9e+02 Score=26.44 Aligned_cols=90 Identities=17% Similarity=0.256 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHhhhhheeeh--cccCcchhh-------h-----hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8990 253 SWIGLLTVILYCSQYVVGFISF--MYPGIADAL-------R-----GVLMPYHVFCGVSIFIMSSCAVLTGLLEKAIFTL 318 (358)
Q Consensus 253 SWLGLiTviLf~lQ~l~Gf~sF--L~P~~~~~~-------R-----a~l~P~H~f~Gl~ifvLaiaT~llGL~eK~~f~~ 318 (358)
=++|-++..++.+|.+.|++-. +.|...... | -.++-+|+...-+.+++...=..-|+.-.
T Consensus 34 ~~~G~ll~~~~~iqiiTGi~L~~~Y~p~~~~Af~Sv~~I~~ev~~Gwl~R~~H~~gas~~~~~~~lH~~r~~~~g----- 108 (215)
T CHL00070 34 YCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTG----- 108 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 4789999999999999998443 335532211 1 24466899998888888888887777644
Q ss_pred cCCCCCCchh-HHHHHHHHHHHHHHHhheeee
Q psy8990 319 SKDYASSGEG-FLMNFIGLLVILYTILIGYLL 349 (358)
Q Consensus 319 ~~~y~~~~e~-~l~N~lGl~li~~g~lV~~~~ 349 (358)
.|+++.|. .+.=++-+++++...+.+|.+
T Consensus 109 --sYk~pre~~W~~Gv~l~~l~m~~af~GY~L 138 (215)
T CHL00070 109 --GFKKPRELTWVTGVVLAVLTVSFGVTGYSL 138 (215)
T ss_pred --hhcCCcccCcHHHHHHHHHHHHHHHccccC
Confidence 25555442 333222233334445556655
No 72
>COG2322 Predicted membrane protein [Function unknown]
Probab=33.36 E-value=2e+02 Score=27.19 Aligned_cols=120 Identities=16% Similarity=0.200 Sum_probs=69.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCcchhhHHHHHHHHHHHHHhhhhheeehcccCcchhhhhhh---hh
Q psy8990 213 KLSHACLHGVILILVLFGLVAAFDSHNFAVPPKPNLYTLHSWIGLLTVILYCSQYVVGFISFMYPGIADALRGVL---MP 289 (358)
Q Consensus 213 K~iH~iLq~lAlilalIGlvAIf~nhn~~~~gipHFySLHSWLGLiTviLf~lQ~l~Gf~sFL~P~~~~~~Ra~l---~P 289 (358)
-.+-+++..+++++.++|...|.+-+. ++.+.-+.+ =+.+=++-+++|.---.+|. .-.+++.. ..|..+ +-
T Consensus 46 p~lnai~~~~s~~~llag~~~Ikrg~i--~~Hk~aMlt-A~~l~l~FlvlYltr~~l~~-~t~f~~~G-~~k~~Y~~iL~ 120 (177)
T COG2322 46 PMLNAIFNSLSFIFLLAGWRLIKRGNI--EKHKRAMLT-AFTLALVFLVLYLTRHGLGG-ETAFGGTG-IYKGIYFFILI 120 (177)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccH--HHHHHHHHH-HHHHHHHHHHHHHHHHhccc-cccCCCCe-eeehHHHHHHH
Confidence 456788999999999999999988644 222222211 12222233333332222222 11222222 455544 44
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC-CchhHHHHHHHHHHHHHHHhh
Q psy8990 290 YHVFCGVSIFIMSSCAVLTGLLEKAIFTLSKDYAS-SGEGFLMNFIGLLVILYTILI 345 (358)
Q Consensus 290 ~H~f~Gl~ifvLaiaT~llGL~eK~~f~~~~~y~~-~~e~~l~N~lGl~li~~g~lV 345 (358)
.|...-.+...|+..++++|...+ |++ -.-++....+=+...+-|++|
T Consensus 121 ~Hi~LA~i~vPLal~al~~a~~~~--------~~rHrki~r~ta~~Wlyva~tGv~V 169 (177)
T COG2322 121 THIILAAINVPLALYALILAWKGL--------YERHRKIGRWTAPLWLYVALTGVVV 169 (177)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcch--------hhhhheeeehhhHHHHHHHHHHHHH
Confidence 799999999999999999998765 223 444555544445455555554
No 73
>PTZ00127 cytochrome c oxidase assembly protein; Provisional
Probab=32.64 E-value=5.6e+02 Score=26.55 Aligned_cols=48 Identities=10% Similarity=0.068 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHhhhhheeehcccCcchhhhhhhhhhhHHHHHHHHHHHHH
Q psy8990 252 HSWIGLLTVILYCSQYVVGFISFMYPGIADALRGVLMPYHVFCGVSIFIMSSC 304 (358)
Q Consensus 252 HSWLGLiTviLf~lQ~l~Gf~sFL~P~~~~~~Ra~l~P~H~f~Gl~ifvLaia 304 (358)
........+.+.++|.+.|+...++ ..+ ..+-..|...+.+++...+.
T Consensus 349 ~~~~~~~ll~lv~lQi~LGi~tv~~-~lP----~~la~~H~~gA~lLl~~~~~ 396 (403)
T PTZ00127 349 VRRLLMALLGALTLQVLLGITTLLS-QVP----VHLAVAHQFGALVLLTTLLR 396 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-hch----HHHHHHHHHHHHHHHHHHHH
Confidence 4445567788889999999987654 222 45677899887777665443
No 74
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=32.25 E-value=1.9e+02 Score=25.70 Aligned_cols=83 Identities=19% Similarity=0.360 Sum_probs=58.3
Q ss_pred hhhHHHHHHHHHHHHHhhhhheeehcccCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCchhH
Q psy8990 250 TLHSWIGLLTVILYCSQYVVGFISFMYPGIADALRGVLMPYHVFCGVSIFIMSSCAVLTGLLEKAIFTLSKDYASSGEGF 329 (358)
Q Consensus 250 SLHSWLGLiTviLf~lQ~l~Gf~sFL~P~~~~~~Ra~l~P~H~f~Gl~ifvLaiaT~llGL~eK~~f~~~~~y~~~~e~~ 329 (358)
=.|=.+|..|.++.....+.+| .+|..+ .+|.|.+++..+.+..+.++++=..-+ +. | -+|+-..
T Consensus 29 iinliiG~vT~l~VLvtii~af---vf~~~~------p~p~~iffavcI~l~~~s~~lLI~WYR----~g-d-l~Pkfr~ 93 (118)
T PF10856_consen 29 IINLIIGAVTSLFVLVTIISAF---VFPQDP------PKPLHIFFAVCILLICISAILLIFWYR----QG-D-LDPKFRY 93 (118)
T ss_pred EEEeehHHHHHHHHHHHHhheE---EecCCC------CCceEEehHHHHHHHHHHHHhheeehh----cC-C-CChhHHH
Confidence 4566899999999999888776 344332 578899999999999888888766533 21 2 2266667
Q ss_pred HHHHHHHHHHHHHHhhee
Q psy8990 330 LMNFIGLLVILYTILIGY 347 (358)
Q Consensus 330 l~N~lGl~li~~g~lV~~ 347 (358)
++-..-..+++.++..-.
T Consensus 94 li~~~~~~ivllci~anl 111 (118)
T PF10856_consen 94 LIYYNCFSIVLLCICANL 111 (118)
T ss_pred HHHHHHHHHHHHHHhhee
Confidence 776666666666665443
No 75
>COG4244 Predicted membrane protein [Function unknown]
Probab=27.03 E-value=1.4e+02 Score=27.66 Aligned_cols=59 Identities=15% Similarity=0.159 Sum_probs=44.5
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHhh-hhhccCCCCCCCCCcchhhH-HHHHHHHHHHHHhhhhhee
Q psy8990 208 GKKGLKLSHACLHGVILILVLFGLVA-AFDSHNFAVPPKPNLYTLHS-WIGLLTVILYCSQYVVGFI 272 (358)
Q Consensus 208 ~k~~~K~iH~iLq~lAlilalIGlvA-If~nhn~~~~gipHFySLHS-WLGLiTviLf~lQ~l~Gf~ 272 (358)
+|...-+.|.....+++++++.+++- +..+++ ++-.+++. +++++|+.+..+|...|-.
T Consensus 82 a~~~a~wh~~lG~il~~~la~~~~~r~~~~~~~------~~~v~~~~L~lsl~~~~Lv~l~g~lG~~ 142 (160)
T COG4244 82 AKQAAEWHHVLGNILLIVLAILTAWRYVHRNDA------VAAVSPAGLLLSLATVLLVALQGYLGAQ 142 (160)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------hhhccHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45555778889999999999999988 333333 45556665 7899999999999888763
No 76
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=26.06 E-value=36 Score=34.08 Aligned_cols=47 Identities=21% Similarity=0.475 Sum_probs=32.3
Q ss_pred HHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHhheeeecCCCCCCC
Q psy8990 309 GLLEKAIFTLSKDYASSGEGFLMNFIGLLVILYTILIGYLLHKPSYKST 357 (358)
Q Consensus 309 GL~eK~~f~~~~~y~~~~e~~l~N~lGl~li~~g~lV~~~~~~~~~kr~ 357 (358)
++.+......+..|........+.++.+++|+.-+++.|++.| |||.
T Consensus 238 ~~~~~~~~~i~~~~~~~~t~I~aSiiaIliIVLIMvIIYLILR--YRRK 284 (299)
T PF02009_consen 238 AITTAETAAINSTYASLTTAIIASIIAILIIVLIMVIIYLILR--YRRK 284 (299)
T ss_pred hhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 3444444333333455667888899999999988888888866 7773
No 77
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=25.39 E-value=2.7e+02 Score=27.32 Aligned_cols=58 Identities=24% Similarity=0.288 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHhheeeecCCCC
Q psy8990 295 GVSIFIMSSCAVLTGLLEKAIFTLSKDYASSGEGFLMNFIGLLVILYTILIGYLLHKPSY 354 (358)
Q Consensus 295 Gl~ifvLaiaT~llGL~eK~~f~~~~~y~~~~e~~l~N~lGl~li~~g~lV~~~~~~~~~ 354 (358)
|+...+=+..++++|...-. |.+-.--.+.+..-..|.+|+.+++.+..+... .||+=
T Consensus 82 glg~liW~s~n~l~Gw~~gr-fGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~f-ik~~~ 139 (254)
T PF07857_consen 82 GLGMLIWGSVNCLTGWASGR-FGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSF-IKSEE 139 (254)
T ss_pred HHHHHHHHHHHHHHHHHHhh-ceeccccccccchhHHHHHHHHHHHHHHHheee-ecCCC
Confidence 33444456777999987652 322211123667889999999999999876544 45543
No 78
>TIGR03144 cytochr_II_ccsB cytochrome c-type biogenesis protein CcsB. Members of this protein family represent one of two essential proteins of system II for c-type cytochrome biogenesis. Additional proteins tend to be part of the system but can be replaced by chemical reductants such as dithiothreitol. This protein is designated CcsB in Bordetella pertussis and some other bacteria, resC in Bacillus (where there is additional N-terminal sequence), and CcsA in chloroplast. We use the CcsB designation here. Member sequences show regions of strong sequence conservation and variable-length, poorly conserved regions in between; sparsely filled columns were removed from the seed alignment prior to model construction.
Probab=24.92 E-value=4.5e+02 Score=24.89 Aligned_cols=23 Identities=17% Similarity=-0.078 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhh
Q psy8990 214 LSHACLHGVILILVLFGLVAAFD 236 (358)
Q Consensus 214 ~iH~iLq~lAlilalIGlvAIf~ 236 (358)
..|=.+..++.+.+++.+..-.+
T Consensus 27 n~~e~~~~~aw~~~~~~l~~~~~ 49 (243)
T TIGR03144 27 NLYESLLFLSWSLSLIYLILERK 49 (243)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555444444444443
No 79
>cd01661 cbb3_Oxidase_I Cytochrome cbb3 oxidase subunit I. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found mainly in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons to the binuclear center. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two
Probab=24.45 E-value=1.5e+02 Score=31.36 Aligned_cols=33 Identities=3% Similarity=-0.002 Sum_probs=22.3
Q ss_pred CcchhhHHHHHHHHHHHHHhhhhheeehcccCc
Q psy8990 247 NLYTLHSWIGLLTVILYCSQYVVGFISFMYPGI 279 (358)
Q Consensus 247 HFySLHSWLGLiTviLf~lQ~l~Gf~sFL~P~~ 279 (358)
.|+-...+=|.+.+..+......|+..|+.|..
T Consensus 85 ~f~~~rt~H~~~~if~w~~~~~~g~~~ylvp~~ 117 (493)
T cd01661 85 SFGRLRPLHTNAVIFGFGGNALIATSFYVVQRT 117 (493)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355444455666666677788889877777764
No 80
>cd00284 Cytochrome_b_N Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Probab=24.32 E-value=4.7e+02 Score=24.57 Aligned_cols=60 Identities=20% Similarity=0.212 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhhhhheeeh--cccCcchhh-------h-----hhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy8990 254 WIGLLTVILYCSQYVVGFISF--MYPGIADAL-------R-----GVLMPYHVFCGVSIFIMSSCAVLTGLLEK 313 (358)
Q Consensus 254 WLGLiTviLf~lQ~l~Gf~sF--L~P~~~~~~-------R-----a~l~P~H~f~Gl~ifvLaiaT~llGL~eK 313 (358)
.+|-++...+.+|.+.|++-. +.|...... | -.++..|+...-..+++...=..-++.-.
T Consensus 24 ~~G~ll~~~~~iqiiTGi~La~~Y~p~~~~A~~Sv~~i~~ev~~G~liR~~H~~gas~~~~~~~lH~~r~~~~g 97 (200)
T cd00284 24 NFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYG 97 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999998543 335532211 1 24466888888877777776666666543
No 81
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=24.24 E-value=3.3e+02 Score=29.42 Aligned_cols=38 Identities=11% Similarity=0.224 Sum_probs=20.1
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcceeecceeecCCCCcccchhhHHHhhhhc
Q psy8990 101 FNPIFYFSQAVGAAIVVLVSIWTIHHRGGFTWRSNPGLEFNWHPLLMTIGLV 152 (358)
Q Consensus 101 f~~~~~~a~~lgl~~vvlv~~W~~~~rgGf~w~~~~~~~FnwHPlLMtlGfv 152 (358)
|...++.-++-++.+..++..+.. ..+||-.|-+.+..
T Consensus 157 Ft~fY~~iNiGsl~~p~i~~~~~~--------------~~g~~~gF~~aavG 194 (498)
T COG3104 157 FTLFYMGINIGSLIAPIITGLLAI--------------NYGWHVGFGLAAVG 194 (498)
T ss_pred ccEEEEEeehHHHHHHHHHHHHHH--------------hhCHHHHHHHHHHH
Confidence 444444445555555555555542 13477666665555
No 82
>PF02628 COX15-CtaA: Cytochrome oxidase assembly protein; InterPro: IPR003780 This entry represents 2 activities required for heme biosynthesis: Protoheme IX farnesyltransferase converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. Heme A synthase catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group. The entry contains CtaA, which is required for cytochrome aa3 biosynthesis and sporulation in Bacillus subtilis [] and in Saccharomyces cerevisiae (Baker's yeast) the COX15 protein is required for cytochrome c oxidase assembly.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006461 protein complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=23.55 E-value=2.7e+02 Score=27.00 Aligned_cols=75 Identities=19% Similarity=0.253 Sum_probs=49.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCcchhhHHHHHHHHHHHHHhhhhheeehcccCcchhhhhhhhhhhH
Q psy8990 213 KLSHACLHGVILILVLFGLVAAFDSHNFAVPPKPNLYTLHSWIGLLTVILYCSQYVVGFISFMYPGIADALRGVLMPYHV 292 (358)
Q Consensus 213 K~iH~iLq~lAlilalIGlvAIf~nhn~~~~gipHFySLHSWLGLiTviLf~lQ~l~Gf~sFL~P~~~~~~Ra~l~P~H~ 292 (358)
...|-.+-.+.++..+.-.+..++..+ + ......+..++.+.++|.+.|+...+. +.+ ..+-..|.
T Consensus 226 ~~~Hr~~A~~~~~~~~~l~~~~~r~~~------~---~~~~~~~~~~~~ll~~Qv~lGi~~v~~-~~p----~~l~~~H~ 291 (302)
T PF02628_consen 226 QFIHRLLALLVLLLLLALAVRAWRRRR------S---RALRRLAVLLLALLLLQVLLGILTVLT-GLP----VWLALLHQ 291 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccC------c---HHHHHHHHHHHHHHHHHHHHHHHHHHh-cCc----HHHHHHHH
Confidence 455666555554444444344444333 1 567788888899999999999987765 223 35678899
Q ss_pred HHHHHHHHH
Q psy8990 293 FCGVSIFIM 301 (358)
Q Consensus 293 f~Gl~ifvL 301 (358)
..+.+++..
T Consensus 292 ~~a~ll~~~ 300 (302)
T PF02628_consen 292 AGAALLLAA 300 (302)
T ss_pred HHHHHHHHH
Confidence 888877654
No 83
>PLN02631 ferric-chelate reductase
Probab=23.25 E-value=6.2e+02 Score=28.44 Aligned_cols=93 Identities=12% Similarity=0.064 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcc-CCCCCCCCC-----cchhhHHHHHHHHHHHHHhhhhhe-eehcccCcchhhhhhh
Q psy8990 215 SHACLHGVILILVLFGLVAAFDSH-NFAVPPKPN-----LYTLHSWIGLLTVILYCSQYVVGF-ISFMYPGIADALRGVL 287 (358)
Q Consensus 215 iH~iLq~lAlilalIGlvAIf~nh-n~~~~gipH-----FySLHSWLGLiTviLf~lQ~l~Gf-~sFL~P~~~~~~Ra~l 287 (358)
+=.++..+++++=..+-+....++ ....+..++ +...=-..|++...++.+.++.+- -+++. +.....-.++
T Consensus 110 ~~~~~~f~~~~~w~~~~y~~~~~~~~~~~~~~~~~~~~~l~~ig~RtGila~~~lpll~L~a~Rnn~L~-~ltG~s~e~~ 188 (699)
T PLN02631 110 LTFSLLFVALLAWSLYNYLYLSYHVHLHNDDNAKIWQAKFRAFGLRIGYVGHICWAFLFFPVTRASTIL-PLVGLTSESS 188 (699)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHH-HHHCCCHHHH
Confidence 456677777777777777777765 311000111 111112345665555555544432 11111 0011112578
Q ss_pred hhhhHHHHHHHHHHHHHHHHH
Q psy8990 288 MPYHVFCGVSIFIMSSCAVLT 308 (358)
Q Consensus 288 ~P~H~f~Gl~ifvLaiaT~ll 308 (358)
..+||+.|+++++++++=.+.
T Consensus 189 i~yHRWlGri~~~la~iH~i~ 209 (699)
T PLN02631 189 IKYHIWLGHVSNFLFLVHTVV 209 (699)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999998775443
No 84
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=23.14 E-value=1.3e+02 Score=22.74 Aligned_cols=49 Identities=14% Similarity=0.197 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhhhhheeehcccCc----chhhhhhhhhhhHHHHHHHHHHHHH
Q psy8990 256 GLLTVILYCSQYVVGFISFMYPGI----ADALRGVLMPYHVFCGVSIFIMSSC 304 (358)
Q Consensus 256 GLiTviLf~lQ~l~Gf~sFL~P~~----~~~~Ra~l~P~H~f~Gl~ifvLaia 304 (358)
=+..++.++.-.+.|+..+..|.. ....|...+.+|..+|...+++...
T Consensus 6 ~~~l~~~~~~~~iSGi~l~~~~~~~~~~~~~~~~~~~~iH~~~g~~~~~l~~~ 58 (64)
T PF14358_consen 6 NLLLLVSFLVLAISGILLSFVPFPGLPFLGLNKHFWRNIHLWAGYLFLILIIL 58 (64)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccccccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777766544422 1223457778888888887776654
No 85
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=22.80 E-value=3.1e+02 Score=25.35 Aligned_cols=47 Identities=30% Similarity=0.470 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCcchhhHHHHHHHHHHHHHhhhhheee
Q psy8990 213 KLSHACLHGVILILVLFGLVAAFDSHNFAVPPKPNLYTLHSWIGLLTVILYCSQYVVGFIS 273 (358)
Q Consensus 213 K~iH~iLq~lAlilalIGlvAIf~nhn~~~~gipHFySLHSWLGLiTviLf~lQ~l~Gf~s 273 (358)
..+-..+..+++.+.+.|+..-|..++ .+-+ |++|+++.. .+.|++.
T Consensus 81 ~~ld~~L~~~~if~~~~gi~~~f~~~~------~~~~------gi~tli~~~--i~~G~~~ 127 (206)
T PF06570_consen 81 MALDNSLLFFGIFSLLFGIMGFFSPKN------SNQY------GIITLILVS--IVGGLVF 127 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc------cccc------cHHHHHHHH--HHHHHHH
Confidence 456667778888888888887777655 2222 777776655 4455533
No 86
>PRK10179 formate dehydrogenase-N subunit gamma; Provisional
Probab=22.74 E-value=6.4e+02 Score=23.62 Aligned_cols=99 Identities=18% Similarity=0.191 Sum_probs=59.8
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhccCCC---CCCCCCcchhhHHHHHHHHHHHHHhhhhheeehcccCcch--h----
Q psy8990 212 LKLSHACLHGVILILVLFGLVAAFDSHNFA---VPPKPNLYTLHSWIGLLTVILYCSQYVVGFISFMYPGIAD--A---- 282 (358)
Q Consensus 212 ~K~iH~iLq~lAlilalIGlvAIf~nhn~~---~~gipHFySLHSWLGLiTviLf~lQ~l~Gf~sFL~P~~~~--~---- 282 (358)
.+..||+.-+.-++|++.|+...+-.-... -.+...-..+|-+.|.+-++.++.- +.-+..-..|...+ .
T Consensus 14 ~Ri~HW~~a~s~i~L~~TGl~i~~p~~~~~~~~~g~~~~~r~iH~~~g~vf~~~~~~~-~~~~~~~~~~~~~D~~~~~~~ 92 (217)
T PRK10179 14 DRACHWTVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFM-FVRFVHHNIPDKKDIPWLLNI 92 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHHHH
Confidence 367799999999999999999987542100 0011222458999998866554432 11111111121110 0
Q ss_pred ---h---------hhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy8990 283 ---L---------RGVLMPYHVFCGVSIFIMSSCAVLTGLL 311 (358)
Q Consensus 283 ---~---------Ra~l~P~H~f~Gl~ifvLaiaT~llGL~ 311 (358)
. ..++-|..++.-..+++++++.+++|+.
T Consensus 93 ~~~~~~~~~~~p~~gk~N~~QKl~y~~i~~~~~~~i~TGl~ 133 (217)
T PRK10179 93 VEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVI 133 (217)
T ss_pred HHHhcCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0134556778888888888899999986
No 87
>PF01578 Cytochrom_C_asm: Cytochrome C assembly protein; InterPro: IPR002541 This entry consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium leguminosarum [], CcmC from Escherichia coli and Paracoccus denitrificans [, ] and orf240 from Triticum aestivum (Wheat) mitochondria []. The members of this family are probably integral membrane proteins with six predicted transmembrane helices that may comprise the membrane component of an ABC (ATP binding cassette) transporter complex. This transporter may be necessary for transport of some component needed for cytochrome c assembly. One member, R. leguminosarum CycK, contains a putative haem-binding motif []. Wheat orf240 also contains a putative haem-binding motif and is a proposed ABC transporter with c-type haem as its proposed substrate []. However it seems unlikely that all members of this family transport haem or c-type apocytochromes because P. denitrificans CcmC transports neither [].; GO: 0006461 protein complex assembly, 0008535 respiratory chain complex IV assembly, 0016020 membrane
Probab=22.39 E-value=5.9e+02 Score=23.09 Aligned_cols=22 Identities=18% Similarity=0.120 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHhhhhhccC
Q psy8990 218 CLHGVILILVLFGLVAAFDSHN 239 (358)
Q Consensus 218 iLq~lAlilalIGlvAIf~nhn 239 (358)
.+..++..++++.++..+.++.
T Consensus 7 ~l~~~~~~~~~~~~~~~~~~~~ 28 (214)
T PF01578_consen 7 SLLFLAWLLALIYLFLEYLFRK 28 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 4455555666666555554443
No 88
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=21.10 E-value=2.5e+02 Score=21.10 Aligned_cols=55 Identities=24% Similarity=0.328 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhccC---CCCCCCCCcchhhHHHHHHHHHHHHHhh
Q psy8990 213 KLSHACLHGVILILVLFGLVAAFDSHN---FAVPPKPNLYTLHSWIGLLTVILYCSQY 267 (358)
Q Consensus 213 K~iH~iLq~lAlilalIGlvAIf~nhn---~~~~gipHFySLHSWLGLiTviLf~lQ~ 267 (358)
+.+-..+-...+++.+.|+..-+.-.. +...+++....+|.|.|...+++..+..
T Consensus 3 ~~i~~~l~~~~~~~~iSGi~l~~~~~~~~~~~~~~~~~~~~iH~~~g~~~~~l~~~Hl 60 (64)
T PF14358_consen 3 YIINLLLLVSFLVLAISGILLSFVPFPGLPFLGLNKHFWRNIHLWAGYLFLILIILHL 60 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566667777888888877555433 1112346788999999999998877643
No 89
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=20.66 E-value=4.6e+02 Score=21.19 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=24.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy8990 286 VLMPYHVFCGVSIFIMSSCAVLTGLLE 312 (358)
Q Consensus 286 ~l~P~H~f~Gl~ifvLaiaT~llGL~e 312 (358)
..+++=+..|...++.+++.++.++.+
T Consensus 38 D~~~l~r~~g~~~~~~~i~~li~~l~~ 64 (97)
T PF12650_consen 38 DKKKLCRFMGKFMLIIGIILLIGGLLS 64 (97)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 448899999999999999999999954
No 90
>PF10951 DUF2776: Protein of unknown function (DUF2776); InterPro: IPR021240 This bacterial family of proteins has no known function.
Probab=20.63 E-value=1.8e+02 Score=29.77 Aligned_cols=119 Identities=20% Similarity=0.235 Sum_probs=70.7
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCC-cchhhHHHHHHHHHHHHHhhhhheeehcccCcchhhhhhh-hh
Q psy8990 212 LKLSHACLHGVILILVLFGLVAAFDSHNFAVPPKPN-LYTLHSWIGLLTVILYCSQYVVGFISFMYPGIADALRGVL-MP 289 (358)
Q Consensus 212 ~K~iH~iLq~lAlilalIGlvAIf~nhn~~~~gipH-FySLHSWLGLiTviLf~lQ~l~Gf~sFL~P~~~~~~Ra~l-~P 289 (358)
.+..-.+|-.++.+|.++|.+=.+.--.. ....|+ |.-=|--.|+.+++--....+.-+ .++.|-.+ .+
T Consensus 150 s~~~~~~Liav~~~~~li~~iw~~~Ll~~-~~~~p~y~VAGhVm~Gla~iCtsLIaLVAtI--------~RQirN~ys~~ 220 (347)
T PF10951_consen 150 SRGQGNILIAVPILCALIGWIWAIVLLSS-SDEHPAYFVAGHVMFGLACICTSLIALVATI--------ARQIRNTYSEK 220 (347)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCccceehhHHHhhHHHHHHHHHHHHHHH--------HHHHhccccHH
Confidence 35666788899999999998544332210 122455 778899999998876655544333 34444322 23
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHh
Q psy8990 290 YHVFCGVSIFIMSSCAVLTGLLEKAIFTLSKDYASSGEGFLMNFIGLLVILYTIL 344 (358)
Q Consensus 290 ~H~f~Gl~ifvLaiaT~llGL~eK~~f~~~~~y~~~~e~~l~N~lGl~li~~g~l 344 (358)
=++.-=..+.+|+..+.+.|+.-- +.. ++-.....++++ +||.++.|.+.
T Consensus 221 Er~~W~~lVl~mGsi~~l~Gl~vl--~~~-~~~~~~~~G~il--IGLGlvCySIs 270 (347)
T PF10951_consen 221 ERWKWPKLVLVMGSISILWGLYVL--LAS-SGPANNAPGYIL--IGLGLVCYSIS 270 (347)
T ss_pred HhhhhHHHHHHHhhHHHHhhhheE--Eec-CCcccCCcceee--eehhhHHHHHH
Confidence 334444567888999999998522 111 122225556665 45555666654
No 91
>PLN02292 ferric-chelate reductase
Probab=20.38 E-value=1.5e+02 Score=33.18 Aligned_cols=22 Identities=14% Similarity=0.321 Sum_probs=18.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHH
Q psy8990 285 GVLMPYHVFCGVSIFIMSSCAV 306 (358)
Q Consensus 285 a~l~P~H~f~Gl~ifvLaiaT~ 306 (358)
.++..+||+.|+++++++++=.
T Consensus 203 e~f~~yHRWlGrii~ll~~lH~ 224 (702)
T PLN02292 203 ESSIKYHIWLGHLVMTLFTSHG 224 (702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999887643
No 92
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=20.36 E-value=2.9e+02 Score=22.17 Aligned_cols=65 Identities=18% Similarity=0.268 Sum_probs=40.3
Q ss_pred CCCcchhhHHHHHHHHHHHHHhhhhheeehcccC---cchhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy8990 245 KPNLYTLHSWIGLLTVILYCSQYVVGFISFMYPG---IADALRGVLMPYHVFCGVSIFIMSSCAVLTG 309 (358)
Q Consensus 245 ipHFySLHSWLGLiTviLf~lQ~l~Gf~sFL~P~---~~~~~Ra~l~P~H~f~Gl~ifvLaiaT~llG 309 (358)
.++...+|-|+|.+++++..+..+.=...+.... ............=...|.+.+++.+.-+++.
T Consensus 30 ~~~~~~~Hr~lg~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~a~~~l~~l~~tS 97 (125)
T PF01794_consen 30 FDRLLRFHRWLGRLAFFLALLHGVLYLINWLRFGGWDWQEWFNAWLTGPYNLTGIIALLLLLILAVTS 97 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4556779999999999999988554332221111 1222234445555668888877766666655
Done!