Query psy8990
Match_columns 358
No_of_seqs 157 out of 409
Neff 4.0
Searched_HMMs 29240
Date Sat Aug 17 00:52:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8990.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8990hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gd3_A NI/Fe-hydrogenase 1 B-t 84.3 2.8 9.5E-05 37.6 7.6 58 213-272 19-83 (235)
2 1kqf_C FDH-N gamma, formate de 78.5 6.4 0.00022 34.5 7.7 99 212-311 14-133 (217)
3 1kqf_C FDH-N gamma, formate de 43.5 55 0.0019 28.4 6.8 45 260-305 22-71 (217)
4 4gd3_A NI/Fe-hydrogenase 1 B-t 23.2 1.3E+02 0.0043 26.7 5.7 25 287-311 59-83 (235)
5 1rkl_A Dolichyl-diphosphooligo 20.1 95 0.0032 21.3 3.2 29 325-353 5-33 (36)
6 3l1l_A Arginine/agmatine antip 16.2 4.4E+02 0.015 24.3 8.0 23 334-356 412-434 (445)
7 2lat_A Dolichyl-diphosphooligo 11.2 1.2E+02 0.004 20.9 1.8 27 326-352 6-32 (37)
8 2zkr_l 60S ribosomal protein L 10.8 81 0.0028 26.9 1.1 13 7-19 22-34 (148)
9 2qjy_A Cytochrome B; cytochrom 10.5 7.8E+02 0.027 24.7 8.3 57 255-311 47-117 (445)
10 2lom_A HIG1 domain family memb 12.2 70 0.0024 25.8 0.0 30 205-234 51-82 (93)
No 1
>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}
Probab=84.30 E-value=2.8 Score=37.63 Aligned_cols=58 Identities=12% Similarity=0.152 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCC--C-----cchhhHHHHHHHHHHHHHhhhhhee
Q psy8990 213 KLSHACLHGVILILVLFGLVAAFDSHNFAVPPKP--N-----LYTLHSWIGLLTVILYCSQYVVGFI 272 (358)
Q Consensus 213 K~iH~iLq~lAlilalIGlvAIf~nhn~~~~gip--H-----FySLHSWLGLiTviLf~lQ~l~Gf~ 272 (358)
+.+||+.=++-+++.+.|+........ ..+.+ + ...+|-++|++.+++.++-.+-++.
T Consensus 19 R~~HW~~a~~ii~l~~tG~~~~~~~~~--~~g~~~~~~~~~~~~~~H~~~G~~~~~l~~~Rl~w~~~ 83 (235)
T 4gd3_A 19 RIWHWLTVLCMAVLMVTGYFIGKPLPS--VSGEATYLFYMGYIRLIHFSAGMVFTVVLLMRIYWAFV 83 (235)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHSCCCC--CCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccc--ccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999888888888889876544321 11211 2 2359999999999999998888875
No 2
>1kqf_C FDH-N gamma, formate dehydrogenase, nitrate-inducible, cytochr B556(FDN) subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: f.21.1.1 PDB: 1kqg_C*
Probab=78.51 E-value=6.4 Score=34.51 Aligned_cols=99 Identities=18% Similarity=0.202 Sum_probs=60.1
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhccCC--CCC-CCCCcchhhHHHHHHHHHHHHHhhhhheeehcccCcch--hhh--
Q psy8990 212 LKLSHACLHGVILILVLFGLVAAFDSHNF--AVP-PKPNLYTLHSWIGLLTVILYCSQYVVGFISFMYPGIAD--ALR-- 284 (358)
Q Consensus 212 ~K~iH~iLq~lAlilalIGlvAIf~nhn~--~~~-gipHFySLHSWLGLiTviLf~lQ~l~Gf~sFL~P~~~~--~~R-- 284 (358)
.+..||+.=++-+++.+.|+...+..-.. ... +......+|-++|++.+.+++.-.+ .......|.... ..+
T Consensus 14 ~R~~HW~~a~~ii~l~~tG~~i~~p~~~~l~~~~g~~~~~~~~H~~~G~~~~~l~~~r~~-r~~r~~~p~~~~~~~~~~~ 92 (217)
T 1kqf_C 14 DRACHWTVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMFV-RFVHHNIPDKKDIPWLLNI 92 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTCGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHH-HHGGGSCCCGGGHHHHHSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHchhHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCChhHHHHHHHH
Confidence 47899998888888888898765221100 001 1123678999999999988876432 222222343111 000
Q ss_pred --------------hhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy8990 285 --------------GVLMPYHVFCGVSIFIMSSCAVLTGLL 311 (358)
Q Consensus 285 --------------a~l~P~H~f~Gl~ifvLaiaT~llGL~ 311 (358)
....|..+..=.+++++.++.+++|+.
T Consensus 93 ~~yl~~~~~~~p~~~~~n~~~~~~~~~l~~l~~~~~~TG~~ 133 (217)
T 1kqf_C 93 VEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVI 133 (217)
T ss_dssp HHHHTTCHHHHCCCCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123455565557778888899999975
No 3
>1kqf_C FDH-N gamma, formate dehydrogenase, nitrate-inducible, cytochr B556(FDN) subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: f.21.1.1 PDB: 1kqg_C*
Probab=43.50 E-value=55 Score=28.44 Aligned_cols=45 Identities=22% Similarity=0.372 Sum_probs=26.7
Q ss_pred HHHHHHhhhhheeehcccCcc---h--hhhhhhhhhhHHHHHHHHHHHHHH
Q psy8990 260 VILYCSQYVVGFISFMYPGIA---D--ALRGVLMPYHVFCGVSIFIMSSCA 305 (358)
Q Consensus 260 viLf~lQ~l~Gf~sFL~P~~~---~--~~Ra~l~P~H~f~Gl~ifvLaiaT 305 (358)
.++++++++.|+... +|... . ..+...+.+|..+|.+.+++.+.=
T Consensus 22 a~~ii~l~~tG~~i~-~p~~~~l~~~~g~~~~~~~~H~~~G~~~~~l~~~r 71 (217)
T 1kqf_C 22 VICFFLVALSGISFF-FPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFM 71 (217)
T ss_dssp HHHHHHHHHHHHHHH-CTTCGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-chhHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 344445556665433 44321 1 123457789999999998777653
No 4
>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}
Probab=23.20 E-value=1.3e+02 Score=26.69 Aligned_cols=25 Identities=8% Similarity=0.146 Sum_probs=22.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Q psy8990 287 LMPYHVFCGVSIFIMSSCAVLTGLL 311 (358)
Q Consensus 287 l~P~H~f~Gl~ifvLaiaT~llGL~ 311 (358)
.+.+|..+|++++++.+.=+..++.
T Consensus 59 ~~~~H~~~G~~~~~l~~~Rl~w~~~ 83 (235)
T 4gd3_A 59 IRLIHFSAGMVFTVVLLMRIYWAFV 83 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4569999999999999999888875
No 5
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=20.08 E-value=95 Score=21.25 Aligned_cols=29 Identities=10% Similarity=0.069 Sum_probs=18.2
Q ss_pred CchhHHHHHHHHHHHHHHHhheeeecCCC
Q psy8990 325 SGEGFLMNFIGLLVILYTILIGYLLHKPS 353 (358)
Q Consensus 325 ~~e~~l~N~lGl~li~~g~lV~~~~~~~~ 353 (358)
..-..++|++|+.+.+.-++-=|+-++++
T Consensus 5 ~qL~~lan~lG~~~~~LIvlYH~v~~n~~ 33 (36)
T 1rkl_A 5 EQLNSLAITFGIVMMTLIVIYHAVDSTMS 33 (36)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 45578999999886665444333444443
No 6
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=16.22 E-value=4.4e+02 Score=24.32 Aligned_cols=23 Identities=9% Similarity=-0.008 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhheeeecCCCCCC
Q psy8990 334 IGLLVILYTILIGYLLHKPSYKS 356 (358)
Q Consensus 334 lGl~li~~g~lV~~~~~~~~~kr 356 (358)
.|+.+++.|+.+-+...+.+.|+
T Consensus 412 ~~~~~~~~g~~~y~~~~~~~~~~ 434 (445)
T 3l1l_A 412 WSFVTLMVITAMYALNYNRLHKN 434 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCC
T ss_pred HHHHHHHHHHHHHHHHhhhcccC
Confidence 46666677766655555444443
No 7
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=11.23 E-value=1.2e+02 Score=20.92 Aligned_cols=27 Identities=19% Similarity=0.391 Sum_probs=16.4
Q ss_pred chhHHHHHHHHHHHHHHHhheeeecCC
Q psy8990 326 GEGFLMNFIGLLVILYTILIGYLLHKP 352 (358)
Q Consensus 326 ~e~~l~N~lGl~li~~g~lV~~~~~~~ 352 (358)
.-..++|++|+.+.+.-++-=|+-+++
T Consensus 6 qL~~lan~lG~~~~~LIVlYH~v~~n~ 32 (37)
T 2lat_A 6 QLAIFANMLGVSLFLLVVLYHYVAVNN 32 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 346789999988666544433344444
No 8
>2zkr_l 60S ribosomal protein L27A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=10.84 E-value=81 Score=26.86 Aligned_cols=13 Identities=46% Similarity=0.915 Sum_probs=8.5
Q ss_pred CCCCCCCCCCCch
Q psy8990 7 FGEHSGHSGGPGF 19 (358)
Q Consensus 7 ~~~~~~~~~~~~~ 19 (358)
-|.|.+|+||+||
T Consensus 22 ~gq~r~~~Gg~G~ 34 (148)
T 2zkr_l 22 IGKHRKHPGGRGN 34 (148)
T ss_dssp CSCC--CCSCSSS
T ss_pred CCCCCCCCCCCCc
Confidence 3678889999876
No 9
>2qjy_A Cytochrome B; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_A* 2qjk_A* 2qjp_A* 1zrt_C* 2yiu_A*
Probab=10.48 E-value=7.8e+02 Score=24.73 Aligned_cols=57 Identities=23% Similarity=0.300 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhhhhhee-eh-cccCcchhh-------h-----hhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy8990 255 IGLLTVILYCSQYVVGFI-SF-MYPGIADAL-------R-----GVLMPYHVFCGVSIFIMSSCAVLTGLL 311 (358)
Q Consensus 255 LGLiTviLf~lQ~l~Gf~-sF-L~P~~~~~~-------R-----a~l~P~H~f~Gl~ifvLaiaT~llGL~ 311 (358)
+|-++..++++|.+-|++ ++ +.|...... | -.++-+|+...-..|++...=+.=|++
T Consensus 47 fGsll~~~l~iQilTGifLam~Y~p~~~~Af~Sv~~I~rdV~~GwliR~~H~~gAs~ffi~iylHi~Rgly 117 (445)
T 2qjy_A 47 WGVVLAFCLVLQIVTGIVLAMHYTPHVDLAFASVEHIMRNVNGGFMLRYLHANGASLFFIAVYLHIFRGLY 117 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHeeccCCcHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888899999999963 33 335442111 2 133557777666666665555555554
No 10
>2lom_A HIG1 domain family member 1A; membrane protein, helical bundle; NMR {Homo sapiens}
Probab=12.24 E-value=70 Score=25.83 Aligned_cols=30 Identities=20% Similarity=0.307 Sum_probs=22.9
Q ss_pred ccCCCCcchhHHH--HHHHHHHHHHHHHHhhh
Q psy8990 205 RNYGKKGLKLSHA--CLHGVILILVLFGLVAA 234 (358)
Q Consensus 205 ~~~~k~~~K~iH~--iLq~lAlilalIGlvAI 234 (358)
|..+|+..|.+|+ ..|++++++.+.|.+.-
T Consensus 51 rG~~~~sqklmr~RV~aQg~tV~al~~g~~ys 82 (93)
T 2lom_A 51 RGNTKMSIHLIHMRVAAQGFVVGAMTVGMGYS 82 (93)
Confidence 3446666788887 89999999999887643
Done!