Query psy8990
Match_columns 358
No_of_seqs 157 out of 409
Neff 4.0
Searched_HMMs 13730
Date Sat Aug 17 00:52:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8990.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8990hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kqfc_ f.21.1.1 (C:) Formate 62.7 11 0.00081 30.7 7.7 101 211-311 12-132 (216)
2 d3cx5c2 f.21.1.2 (C:1-261) Mit 32.8 66 0.0048 28.0 8.1 67 255-328 32-112 (261)
3 d1q90b_ f.21.1.2 (B:) Cytochro 26.3 1.2E+02 0.0085 25.5 8.3 70 253-329 31-114 (212)
4 d1ppjc2 f.21.1.2 (C:15-260) Mi 25.4 74 0.0054 27.2 6.9 66 255-327 19-98 (246)
5 d1kqfc_ f.21.1.1 (C:) Formate 11.8 2.5E+02 0.018 21.9 6.8 68 243-311 103-174 (216)
6 d1xmea1 f.24.1.1 (A:14-562) Ba 8.1 7.1E+02 0.052 22.9 9.5 32 247-278 51-82 (549)
7 d1q90b_ f.21.1.2 (B:) Cytochro 7.1 3E+02 0.022 22.7 5.6 85 219-311 37-134 (212)
8 d1nekd_ f.21.2.2 (D:) Succinat 7.1 1.2E+02 0.0084 22.5 2.5 29 208-236 84-112 (113)
9 d2axti1 f.23.37.1 (I:1-35) Pho 6.5 83 0.0061 19.8 1.1 17 257-273 9-25 (35)
10 d1frea_ g.43.1.1 (A:) Nuclear 5.8 1.3E+02 0.0092 18.6 1.7 13 5-17 26-38 (39)
No 1
>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}
Probab=62.67 E-value=11 Score=30.74 Aligned_cols=101 Identities=14% Similarity=0.064 Sum_probs=63.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhhccCCC---CCCCCCcchhhHHHHHHHHHHHHHhhhhheeehcccCcchhh----
Q psy8990 211 GLKLSHACLHGVILILVLFGLVAAFDSHNFA---VPPKPNLYTLHSWIGLLTVILYCSQYVVGFISFMYPGIADAL---- 283 (358)
Q Consensus 211 ~~K~iH~iLq~lAlilalIGlvAIf~nhn~~---~~gipHFySLHSWLGLiTviLf~lQ~l~Gf~sFL~P~~~~~~---- 283 (358)
..+..||+.-++-+++.+.|+...+..-... .........+|-++|++-++..+.-....+.....+......
T Consensus 12 ~~Rl~HW~~a~~~i~L~~TGl~l~~~~~~~~~~~~~~~~~~~~~H~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 91 (216)
T d1kqfc_ 12 IDRACHWTVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHNIPDKKDIPWLLNI 91 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCCCGGGHHHHHSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCcchhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHH
Confidence 3478999999999999999998765433210 011223357899998877666665444443222222111100
Q ss_pred -------------hhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy8990 284 -------------RGVLMPYHVFCGVSIFIMSSCAVLTGLL 311 (358)
Q Consensus 284 -------------Ra~l~P~H~f~Gl~ifvLaiaT~llGL~ 311 (358)
..++.|..+.....++++...-+++|+.
T Consensus 92 ~~~~~~~~~~~~~~~~~n~~qkl~~~~~~~~~~~~~~TGl~ 132 (216)
T d1kqfc_ 92 VEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVI 132 (216)
T ss_dssp HHHHTTCHHHHCCCCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCccHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1144567788888888888888999985
No 2
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=32.82 E-value=66 Score=27.96 Aligned_cols=67 Identities=22% Similarity=0.200 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhhhhheeeh--cccCcchhh-------h-----hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy8990 255 IGLLTVILYCSQYVVGFISF--MYPGIADAL-------R-----GVLMPYHVFCGVSIFIMSSCAVLTGLLEKAIFTLSK 320 (358)
Q Consensus 255 LGLiTviLf~lQ~l~Gf~sF--L~P~~~~~~-------R-----a~l~P~H~f~Gl~ifvLaiaT~llGL~eK~~f~~~~ 320 (358)
+|-++.+++++|.+.|++-. +.|...... | -.++-.|+...-..+++...=..-++..+
T Consensus 32 ~G~ll~~~~~iqiiTGi~L~~~Y~p~~~~A~~Sv~~i~~~v~~Gw~iR~~H~~ga~~~~~~~~lH~~r~~~~g------- 104 (261)
T d3cx5c2 32 MGSLLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHANGASFFFMVMFMHMAKGLYYG------- 104 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHHHHHHHHheecCChHHHHHHHHHHHhhhccChhhhhcccccHHHHHHHHHHHHHHHHHhc-------
Confidence 68889999999999998543 335432211 1 24466898888888888877777776544
Q ss_pred CCCCCchh
Q psy8990 321 DYASSGEG 328 (358)
Q Consensus 321 ~y~~~~e~ 328 (358)
.|+++.|-
T Consensus 105 sy~~pre~ 112 (261)
T d3cx5c2 105 SYRSPRVT 112 (261)
T ss_dssp TTSTTCHH
T ss_pred cccCccch
Confidence 36556654
No 3
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=26.33 E-value=1.2e+02 Score=25.51 Aligned_cols=70 Identities=20% Similarity=0.269 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhhhhheeeh--cccCcchhh-------hh-----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8990 253 SWIGLLTVILYCSQYVVGFISF--MYPGIADAL-------RG-----VLMPYHVFCGVSIFIMSSCAVLTGLLEKAIFTL 318 (358)
Q Consensus 253 SWLGLiTviLf~lQ~l~Gf~sF--L~P~~~~~~-------Ra-----~l~P~H~f~Gl~ifvLaiaT~llGL~eK~~f~~ 318 (358)
=++|-++..++.+|.+.|++-. +-|...... |. .++-.|+...-..+++...=..-++..
T Consensus 31 ~~~Gsll~~~~~iqi~TGi~L~~~Y~p~~~~A~~Sv~~I~~~v~~G~liR~lH~~gAs~~~~~~~lHm~r~~~~------ 104 (212)
T d1q90b_ 31 YCIGGITFTCFLVQVATGFAMTFYYRPTVAEAFASVQYIMTDVNFGWLIRSIHRWSASMMVLMMVLHVFRVYLT------ 104 (212)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHTTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhCCCchhhcccccccchHHHHHHHHHHHHHHHc------
Confidence 4479999999999999998443 335432211 21 445678887777766666555544432
Q ss_pred cCCCCCCchhH
Q psy8990 319 SKDYASSGEGF 329 (358)
Q Consensus 319 ~~~y~~~~e~~ 329 (358)
..|+++.|-.
T Consensus 105 -gsyk~pre~~ 114 (212)
T d1q90b_ 105 -GGFKRPRELT 114 (212)
T ss_dssp -TTTSSSCHHH
T ss_pred -CcccCcccce
Confidence 2365566553
No 4
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=25.39 E-value=74 Score=27.22 Aligned_cols=66 Identities=21% Similarity=0.157 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhhhhheeeh--cccCcchhh-------h-----hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy8990 255 IGLLTVILYCSQYVVGFISF--MYPGIADAL-------R-----GVLMPYHVFCGVSIFIMSSCAVLTGLLEKAIFTLSK 320 (358)
Q Consensus 255 LGLiTviLf~lQ~l~Gf~sF--L~P~~~~~~-------R-----a~l~P~H~f~Gl~ifvLaiaT~llGL~eK~~f~~~~ 320 (358)
+|-++...+++|.+.|++-- +.|...... | -.++-.|+..--+.+++...=..-|+...
T Consensus 19 ~G~ll~~~~~iqiiTGi~L~~~Y~p~~~~A~~Sv~~i~~~v~~G~~iR~~H~~gas~~~~~~~lHm~r~~~~~------- 91 (246)
T d1ppjc2 19 FGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLYYG------- 91 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCTTTHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCcccCchhhcchhHhHHHHHHHHHHHHHHHHHHhc-------
Confidence 69999999999999998543 335433221 1 13456888866666666666666555433
Q ss_pred CCCCCch
Q psy8990 321 DYASSGE 327 (358)
Q Consensus 321 ~y~~~~e 327 (358)
.|+++.|
T Consensus 92 sy~~~~~ 98 (246)
T d1ppjc2 92 SYTFLET 98 (246)
T ss_dssp GGGSHHH
T ss_pred CccchHH
Confidence 2555665
No 5
>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}
Probab=11.78 E-value=2.5e+02 Score=21.95 Aligned_cols=68 Identities=9% Similarity=0.032 Sum_probs=50.4
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHhhhhheeehcccCc----chhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy8990 243 PPKPNLYTLHSWIGLLTVILYCSQYVVGFISFMYPGI----ADALRGVLMPYHVFCGVSIFIMSSCAVLTGLL 311 (358)
Q Consensus 243 ~gipHFySLHSWLGLiTviLf~lQ~l~Gf~sFL~P~~----~~~~Ra~l~P~H~f~Gl~ifvLaiaT~llGL~ 311 (358)
++...+.....+...+.++...++.+.|+..+. |.. +.........+|.....++..+.++=+.+.+.
T Consensus 103 ~~~~~~n~~qkl~~~~~~~~~~~~~~TGl~l~~-~~~~~~~~~~~~~~~~~iH~~~~~l~~~~vi~Hvy~a~~ 174 (216)
T d1kqfc_ 103 ADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWR-PYFAQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMAFW 174 (216)
T ss_dssp CCCCSSCHHHHHHHHHHHHHHHHHHHHHHHTCT-TTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445677889999999999999999999986543 322 23334556679999988888888877776654
No 6
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase subunit I {Thermus thermophilus [TaxId: 274]}
Probab=8.06 E-value=7.1e+02 Score=22.92 Aligned_cols=32 Identities=13% Similarity=0.353 Sum_probs=21.8
Q ss_pred CcchhhHHHHHHHHHHHHHhhhhheeehcccC
Q psy8990 247 NLYTLHSWIGLLTVILYCSQYVVGFISFMYPG 278 (358)
Q Consensus 247 HFySLHSWLGLiTviLf~lQ~l~Gf~sFL~P~ 278 (358)
+++.+-.-=|.+.+..+..+...|+..++.|.
T Consensus 51 ~Y~~~~T~Hg~~mif~f~~~~~~g~~~y~vp~ 82 (549)
T d1xmea1 51 SYYQGLTLHGVLNAIVFTQLFAQAIMVYLPAR 82 (549)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45544333456677778888899998777664
No 7
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=7.10 E-value=3e+02 Score=22.72 Aligned_cols=85 Identities=14% Similarity=0.201 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHhhhhhccCCCCC-------------CCCCcchhhHHHHHHHHHHHHHhhhhheeehcccCcchhhhh
Q psy8990 219 LHGVILILVLFGLVAAFDSHNFAVP-------------PKPNLYTLHSWIGLLTVILYCSQYVVGFISFMYPGIADALRG 285 (358)
Q Consensus 219 Lq~lAlilalIGlvAIf~nhn~~~~-------------gipHFySLHSWLGLiTviLf~lQ~l~Gf~sFL~P~~~~~~Ra 285 (358)
+-.+=++.++.|+...+.+...... .--=+.++|.|-.=..+++..++..=+++. + ..|
T Consensus 37 l~~~~~iqi~TGi~L~~~Y~p~~~~A~~Sv~~I~~~v~~G~liR~lH~~gAs~~~~~~~lHm~r~~~~----g---syk- 108 (212)
T d1q90b_ 37 TFTCFLVQVATGFAMTFYYRPTVAEAFASVQYIMTDVNFGWLIRSIHRWSASMMVLMMVLHVFRVYLT----G---GFK- 108 (212)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----T---TTS-
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhCCCchhhcccccccchHHHHHHHHHHHHHHHc----C---ccc-
Confidence 3333344555777776665541110 001234778888888888888887776532 1 111
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy8990 286 VLMPYHVFCGVSIFIMSSCAVLTGLL 311 (358)
Q Consensus 286 ~l~P~H~f~Gl~ifvLaiaT~llGL~ 311 (358)
+-+..-...|..++.+.++++.+|..
T Consensus 109 ~pre~~W~~Gv~l~~l~m~~aftGY~ 134 (212)
T d1q90b_ 109 RPRELTWVTGVIMAVCTVSFGVTGYS 134 (212)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccceehHhHHHHHHHHHHHHhhhh
Confidence 12345678999999999999999964
No 8
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=7.07 E-value=1.2e+02 Score=22.45 Aligned_cols=29 Identities=10% Similarity=0.236 Sum_probs=24.8
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHhhhhh
Q psy8990 208 GKKGLKLSHACLHGVILILVLFGLVAAFD 236 (358)
Q Consensus 208 ~k~~~K~iH~iLq~lAlilalIGlvAIf~ 236 (358)
+++.|+..........+++++.|+.++|.
T Consensus 84 ~~~~r~~~~~~~~~~~~~~~~~~i~~lw~ 112 (113)
T d1nekd_ 84 PLALRLMLQLVIVVALVVYVIYGFVVVWG 112 (113)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45567899999999999999999998874
No 9
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.51 E-value=83 Score=19.79 Aligned_cols=17 Identities=29% Similarity=0.710 Sum_probs=13.6
Q ss_pred HHHHHHHHHhhhhheee
Q psy8990 257 LLTVILYCSQYVVGFIS 273 (358)
Q Consensus 257 LiTviLf~lQ~l~Gf~s 273 (358)
.+++++|+.-+++||++
T Consensus 9 y~vV~fFv~lFiFGFLS 25 (35)
T d2axti1 9 YIVVTFFVLLFVFGFLS 25 (35)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHhhcc
Confidence 46778888889999865
No 10
>d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=5.78 E-value=1.3e+02 Score=18.56 Aligned_cols=13 Identities=23% Similarity=0.207 Sum_probs=9.5
Q ss_pred CCCCCCCCCCCCC
Q psy8990 5 ANFGEHSGHSGGP 17 (358)
Q Consensus 5 ~~~~~~~~~~~~~ 17 (358)
+.+|||.+|+=-|
T Consensus 26 ~~~~~H~~H~v~p 38 (39)
T d1frea_ 26 RDSLKHASHNFLP 38 (39)
T ss_dssp SSCSSCTTCCCCC
T ss_pred cCCCCcCCCcEee
Confidence 3579999997443
Done!