RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8990
(358 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 0.002
Identities = 31/175 (17%), Positives = 52/175 (29%), Gaps = 58/175 (33%)
Query: 188 YKRYPRPEDVNLIYRS---LRNYGKKGLKLSHACLHGVILILVLFGLVAAFDSHNF---- 240
Y+ Y +LI S L + L G + +
Sbjct: 177 YQTYH-VLVGDLIKFSAETLSELIRTTLDAEKVFTQG-------------LNILEWLENP 222
Query: 241 -AVPPKPNLYTLH---SW--IGLLTVILYCSQYVVGFISFMY-PG-IADALRGVLMPYHV 292
P K Y L S IG++ + YVV + PG + L+G
Sbjct: 223 SNTPDKD--YLLSIPISCPLIGVIQ----LAHYVVTAKLLGFTPGELRSYLKGAT----- 271
Query: 293 FCGVSIFIMSSCAVLTGLLEKAIFTLSKDYASSGEGFLMNFIGLLVILYTILIGY 347
G S ++++ A+ S E F ++ + +L+ IG
Sbjct: 272 --GHSQGLVTAVAIAE--------------TDSWESFFVSVRKAITVLF--FIGV 308
Score = 38.9 bits (90), Expect = 0.002
Identities = 62/382 (16%), Positives = 101/382 (26%), Gaps = 128/382 (33%)
Query: 22 LAAATTASTNSGISGGAPVEYGPLWEHHSAG----------------YHSEL--LAAGY- 62
+ TA + L+ G Y EL L Y
Sbjct: 123 IKNYITARIMAKRPFDKKSN-SALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYH 181
Query: 63 PVTPELWATTHTHLSNLENYSDYKNSKMAGHQVEDLRGF--NP-----IFYFSQA----V 111
+ +L + LS L + K+ + ++ + NP Y
Sbjct: 182 VLVGDLIKFSAETLSELIR-TTLDAEKVFTQGL-NILEWLENPSNTPDKDYLLSIPISCP 239
Query: 112 GAAIVVLVSIWTIHHRGGFTWRSNPGLEFNWHPLLMTIGLVSKD--------YASSGEGF 163
++ L GFT PG E L S+ S E F
Sbjct: 240 LIGVIQLAHYVVTAKLLGFT----PG-ELR--SYLKGATGHSQGLVTAVAIAETDSWESF 292
Query: 164 LMNFIGLLVILYTILIGYLLHKPSYKRYPRPE-DVNLIYRSLRNYGK---------KGLK 213
++ + +L+ IG Y+ YP +++ SL N + L
Sbjct: 293 FVSVRKAITVLF--FIGV----RCYEAYPNTSLPPSILEDSLEN-NEGVPSPMLSISNLT 345
Query: 214 LSHACLHGVILILVLFGLVAAFDSH----------------NFAV--PPKPNLYTLHSWI 255
+ V +SH N V PP+ +LY L+ +
Sbjct: 346 QEQ-----------VQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQ-SLYGLNLTL 393
Query: 256 GLLTV--------ILYCSQYVVGFISFMYPGIADALRGVLMPYHVFCGVSIFIMSSCAVL 307
I + + + F+ P V P+H S
Sbjct: 394 RKAKAPSGLDQSRIPFSERKLKFSNRFL-P--------VASPFH----------SH---- 430
Query: 308 TGLLEKAIFTLSKDYASSGEGF 329
LL A ++KD + F
Sbjct: 431 --LLVPASDLINKDLVKNNVSF 450
Score = 29.2 bits (65), Expect = 2.6
Identities = 26/152 (17%), Positives = 46/152 (30%), Gaps = 52/152 (34%)
Query: 50 SAGYHSELLAAGYPVTPELWATTHTHLSNLENYS-DYKNSKMA--------GHQVEDLRG 100
++ +HS LL P + + +L + + + G DLR
Sbjct: 424 ASPFHSHLLV---PASDLI-------NKDLVKNNVSFNAKDIQIPVYDTFDG---SDLRV 470
Query: 101 FNPIFYFSQAVGAAIVVLVSIWTIHHRGGFTWRSNPGLEFNWHPLLMTIGLVSKDYASSG 160
S ++ IV + + W + + H L G +SG
Sbjct: 471 ------LSGSISERIVDCIIRLPVK------WETTTQFKAT-HILDFGPG------GASG 511
Query: 161 EGFLMNFI----GLLVILYTIL-------IGY 181
G L + G+ VI+ L G+
Sbjct: 512 LGVLTHRNKDGTGVRVIVAGTLDINPDDDYGF 543
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.43
Identities = 37/226 (16%), Positives = 58/226 (25%), Gaps = 68/226 (30%)
Query: 26 TTASTNSGISGGAPVEYGPLWEHHSAGYHS----ELLA--AGYPVT--PE---------- 67
TT A +HHS LL P
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330
Query: 68 --LWATTHTHLSNLENYSDYKNSKMAGHQVE---------DLRG-FNPIFYFSQAVGAAI 115
+ + L+ +N+ K+ +E + R F+ + F +
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLT-TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389
Query: 116 VVLVSIWTIHHRGGFTWRSNPGLEFNWHPLLMTIGLVSKDYASSGEGFLMNFIGLLVILY 175
++L IW +S+ + N L LV K S
Sbjct: 390 ILLSLIW------FDVIKSDVMVVVN---KLHKYSLVEKQPKES--------------TI 426
Query: 176 TILIGYL-----------LHKPSYKRYPRPEDV---NLIYRSLRNY 207
+I YL LH+ Y P+ +LI L Y
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Score = 28.3 bits (62), Expect = 5.4
Identities = 20/133 (15%), Positives = 41/133 (30%), Gaps = 53/133 (39%)
Query: 150 GLVSKDYASSGEGFLMNFI-------GLLVILYTILIGYL--LHK--PSYKRY--PRPED 196
++ +Y FLM+ I ++ +Y I L+ + +Y R +
Sbjct: 85 EVLRINY-----KFLMSPIKTEQRQPSMMTRMY---IEQRDRLYNDNQVFAKYNVSRLQP 136
Query: 197 VNLIYRSLRNYGKKGLKLSHA---CLHG-------VILILVL--FGLVAAFDSHNFAVPP 244
+ ++L L+L A + G + + V + + D F
Sbjct: 137 YLKLRQAL-------LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF---- 185
Query: 245 KPNLYTLHSWIGL 257
W+ L
Sbjct: 186 ---------WLNL 189
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT,
glutamate-GABA antiporter, transport protein; 3.10A
{Escherichia coli} PDB: 4dji_A
Length = 511
Score = 28.3 bits (63), Expect = 5.1
Identities = 24/137 (17%), Positives = 46/137 (33%), Gaps = 12/137 (8%)
Query: 221 GVILILVLFGLVAAFDSHNFAVPPKPNLYTLHSWIGLLTVILYCSQYVVGFISFMYPGIA 280
VI + L L +N + LTV++Y Y + FI ++ +
Sbjct: 346 LVITSIALIILTNTGGGNNMSF----------LIALALTVVIYLCAYFMLFIGYIVLVLK 395
Query: 281 --DALRGVLMPYHVFCGVSIFIMSSCAVLTGLLEKAIFTLSKDYASSGEGFLMNFIGLLV 338
D R +P + + I+ + + + + S+ + + LV
Sbjct: 396 HPDLKRTFNIPGGKGVKLVVAIVGLLTSIMAFIVSFLPPDNIQGDSTDMYVELLVVSFLV 455
Query: 339 ILYTILIGYLLHKPSYK 355
+L I Y +H K
Sbjct: 456 VLALPFILYAVHDRKGK 472
>3rko_L NADH-quinone oxidoreductase subunit L; complex I, proton pump,
membrane protein, Na ubiquinone, cytoplasmic membrane;
HET: LFA CA7; 3.00A {Escherichia coli}
Length = 613
Score = 28.0 bits (63), Expect = 5.3
Identities = 12/85 (14%), Positives = 28/85 (32%), Gaps = 10/85 (11%)
Query: 107 FSQAVGAAIVVLVSIWTIHHRGGFTWRSNPGLEFNWHPLLMTIGLVSKDYASSGEGFLMN 166
+ + + + +TW S ++ +L D S ++
Sbjct: 42 ALVTAFIGVDFFANGEQTYSQPLWTWMSVGDFNIGFNLVL--------DGLSLTMLSVVT 93
Query: 167 FIGLLVILYTILIGYLLHKPSYKRY 191
+G L+ +Y Y+ + Y R+
Sbjct: 94 GVGFLIHMYAS--WYMRGEEGYSRF 116
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.141 0.448
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,803,771
Number of extensions: 351917
Number of successful extensions: 704
Number of sequences better than 10.0: 1
Number of HSP's gapped: 701
Number of HSP's successfully gapped: 17
Length of query: 358
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 263
Effective length of database: 4,049,298
Effective search space: 1064965374
Effective search space used: 1064965374
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.4 bits)