BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8996
(95 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TLL|A Chain A, Crystal Structure Of Rat Neuronal Nitric-Oxide Synthase
Reductase Module At 2.3 A Resolution.
pdb|1TLL|B Chain B, Crystal Structure Of Rat Neuronal Nitric-Oxide Synthase
Reductase Module At 2.3 A Resolution
Length = 688
Score = 64.7 bits (156), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/53 (50%), Positives = 39/53 (73%)
Query: 30 YANNYTTEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFAQNLHALR 82
+ + + + + M+EYD+ +EHEAL+LVV STFGNGDPPENG++F L +R
Sbjct: 36 FKHAFDAKAMSMEEYDIVHLEHEALVLVVTSTFGNGDPPENGEKFGCALMEMR 88
>pdb|3HR4|A Chain A, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|C Chain C, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|E Chain E, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|G Chain G, Human Inos Reductase And Calmodulin Complex
Length = 219
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 37/53 (69%)
Query: 30 YANNYTTEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFAQNLHALR 82
++ + +V+ MD+Y +S +E E L+LVV STFGNGD P NG++ ++L L+
Sbjct: 65 FSCAFNPKVVCMDKYRLSCLEEERLLLVVTSTFGNGDCPGNGEKLKKSLFMLK 117
>pdb|3QFR|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450
Reductase (R457h Mutant)
pdb|3QFR|B Chain B, Crystal Structure Of Human Nadph-Cytochrome P450
Reductase (R457h Mutant)
Length = 618
Score = 32.3 bits (72), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 18 YANNYTTESEVHYANNYTTEVLRMDEYDMSSIEH--EALILVVASTFGNGDPPENGQEFA 75
+AN + ++ + + + D D+SS+ AL++ +T+G GDP +N Q+F
Sbjct: 35 FANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDNALVVFCMATYGEGDPTDNAQDFY 94
Query: 76 QNLH 79
L
Sbjct: 95 DWLQ 98
>pdb|3QFC|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 (V492e
Mutant)
pdb|3QFC|B Chain B, Crystal Structure Of Human Nadph-Cytochrome P450 (V492e
Mutant)
Length = 618
Score = 32.3 bits (72), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 18 YANNYTTESEVHYANNYTTEVLRMDEYDMSSIEH--EALILVVASTFGNGDPPENGQEFA 75
+AN + ++ + + + D D+SS+ AL++ +T+G GDP +N Q+F
Sbjct: 35 FANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDNALVVFCMATYGEGDPTDNAQDFY 94
Query: 76 QNLH 79
L
Sbjct: 95 DWLQ 98
>pdb|3QE2|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450
Reductase
pdb|3QE2|B Chain B, Crystal Structure Of Human Nadph-Cytochrome P450
Reductase
Length = 618
Score = 32.3 bits (72), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 18 YANNYTTESEVHYANNYTTEVLRMDEYDMSSIEH--EALILVVASTFGNGDPPENGQEFA 75
+AN + ++ + + + D D+SS+ AL++ +T+G GDP +N Q+F
Sbjct: 35 FANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDNALVVFCMATYGEGDPTDNAQDFY 94
Query: 76 QNLH 79
L
Sbjct: 95 DWLQ 98
>pdb|1B1C|A Chain A, Crystal Structure Of The Fmn-Binding Domain Of Human
Cytochrome P450 Reductase At 1.93a Resolution
Length = 181
Score = 32.0 bits (71), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 18 YANNYTTESEVHYANNYTTEVLRMDEYDMSSIEH--EALILVVASTFGNGDPPENGQEFA 75
+AN + ++ + + + D D+SS+ AL++ +T+G GDP +N Q+F
Sbjct: 34 FANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDNALVVFCMATYGEGDPTDNAQDFY 93
Query: 76 QNLH 79
L
Sbjct: 94 DWLQ 97
>pdb|1YKG|A Chain A, Solution Structure Of The Flavodoxin-Like Domain From
The Escherichia Coli Sulfite Reductase
Length = 167
Score = 32.0 bits (71), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 31 ANNYTTEVLRMDEYDMSSIEHEALILVVASTFGNGDPPE 69
A +++ +Y I E L++VV ST G G+PPE
Sbjct: 36 AAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGEGEPPE 74
>pdb|1AMO|A Chain A, Three-Dimensional Structure Of Nadph-Cytochrome P450
Reductase: Prototype For Fmn-And Fad-Containing Enzymes
pdb|1AMO|B Chain B, Three-Dimensional Structure Of Nadph-Cytochrome P450
Reductase: Prototype For Fmn-And Fad-Containing Enzymes
Length = 615
Score = 32.0 bits (71), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 18 YANNYTTESEVHYANNYTTEVLRMDEYDMSSIEH--EALILVVASTFGNGDPPENGQEFA 75
+AN + ++ + + + D D+SS+ ++L++ +T+G GDP +N Q+F
Sbjct: 31 FANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKSLVVFCMATYGEGDPTDNAQDFY 90
Query: 76 QNLH 79
L
Sbjct: 91 DWLQ 94
>pdb|1JA1|A Chain A, Cypor-Triple Mutant
pdb|1JA1|B Chain B, Cypor-Triple Mutant
Length = 622
Score = 32.0 bits (71), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 18 YANNYTTESEVHYANNYTTEVLRMDEYDMSSIEH--EALILVVASTFGNGDPPENGQEFA 75
+AN + ++ + + + D D+SS+ ++L++ +T+G GDP +N Q+F
Sbjct: 38 FANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKSLVVFCMATYGEGDPTDNAQDFY 97
Query: 76 QNLH 79
L
Sbjct: 98 DWLQ 101
>pdb|1J9Z|A Chain A, Cypor-W677g
pdb|1J9Z|B Chain B, Cypor-W677g
Length = 622
Score = 32.0 bits (71), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 18 YANNYTTESEVHYANNYTTEVLRMDEYDMSSIEH--EALILVVASTFGNGDPPENGQEFA 75
+AN + ++ + + + D D+SS+ ++L++ +T+G GDP +N Q+F
Sbjct: 38 FANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKSLVVFCMATYGEGDPTDNAQDFY 97
Query: 76 QNLH 79
L
Sbjct: 98 DWLQ 101
>pdb|1JA0|A Chain A, Cypor-W677x
pdb|1JA0|B Chain B, Cypor-W677x
Length = 620
Score = 32.0 bits (71), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 18 YANNYTTESEVHYANNYTTEVLRMDEYDMSSIEH--EALILVVASTFGNGDPPENGQEFA 75
+AN + ++ + + + D D+SS+ ++L++ +T+G GDP +N Q+F
Sbjct: 38 FANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKSLVVFCMATYGEGDPTDNAQDFY 97
Query: 76 QNLH 79
L
Sbjct: 98 DWLQ 101
>pdb|3ES9|A Chain A, Nadph-Cytochrome P450 Reductase In An Open Conformation
pdb|3ES9|B Chain B, Nadph-Cytochrome P450 Reductase In An Open Conformation
pdb|3ES9|C Chain C, Nadph-Cytochrome P450 Reductase In An Open Conformation
Length = 618
Score = 32.0 bits (71), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 18 YANNYTTESEVHYANNYTTEVLRMDEYDMSSIEH--EALILVVASTFGNGDPPENGQEFA 75
+AN + ++ + + + D D+SS+ ++L++ +T+G GDP +N Q+F
Sbjct: 38 FANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKSLVVFCMATYGEGDPTDNAQDFY 97
Query: 76 QNLH 79
L
Sbjct: 98 DWLQ 101
>pdb|3OJW|A Chain A, Disulfide Crosslinked Cytochrome P450 Reductase Inactive
pdb|3OJX|A Chain A, Disulfide Crosslinked Cytochrome P450 Reductase Inactive
Length = 622
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 18 YANNYTTESEVHYANNYTTEVLRMDEYDMSSIEH--EALILVVASTFGNGDPPENGQEFA 75
+AN + ++ + + + D D+SS+ ++L++ +T+G GDP N Q+F
Sbjct: 38 FANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKSLVVFAMATYGEGDPTCNAQDFY 97
Query: 76 QNLH 79
L
Sbjct: 98 DWLQ 101
>pdb|1BVY|F Chain F, Complex Of The Heme And Fmn-Binding Domains Of The
Cytochrome P450(Bm-3)
Length = 191
Score = 28.9 bits (63), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 12/53 (22%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 26 SEVHYANNYTTEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFAQNL 78
+++ + + +V +D + ++ E +L+V +++ NG PP+N ++F L
Sbjct: 43 ADIAMSKGFAPQVATLDSH-AGNLPREGAVLIVTASY-NGHPPDNAKQFVDWL 93
>pdb|1VBL|A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47
Length = 416
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 43 EYDMSSIEHEALILVVASTFGNGDPPEN------GQEFAQNLHALRI 83
EYD SIE + I + +TF +GD P+ G+ F Q+ AL I
Sbjct: 188 EYDSISIEGSSHIWIDHNTFTDGDHPDRSLGTYFGRPFQQHDGALDI 234
>pdb|2ODI|A Chain A, Restriction Endonuclease Bcni-Cognate Dna Substrate
Complex
pdb|2ODI|B Chain B, Restriction Endonuclease Bcni-Cognate Dna Substrate
Complex
Length = 238
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 22 YTTESEVHYANNYTTEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFAQ 76
+ +E ++Y + Y + +D++ + E L+LV A T G + PE F +
Sbjct: 130 HASEINLYYQDEY------LSTWDLNLSKIEKLVLVFAETIGRANSPEEQFHFTK 178
>pdb|2ODH|A Chain A, Restriction Endonuclease Bcni In The Absence Of Dna
pdb|2Q10|A Chain A, Restriction Endonuclease Bcni (Wild Type)-Cognate Dna
Substrate Complex
pdb|2Q10|B Chain B, Restriction Endonuclease Bcni (Wild Type)-Cognate Dna
Substrate Complex
pdb|3IMB|A Chain A, Alternative Binding Mode Of Restriction Endonuclease Bcni
To Cognate Dna
pdb|3IMB|B Chain B, Alternative Binding Mode Of Restriction Endonuclease Bcni
To Cognate Dna
pdb|3IMB|C Chain C, Alternative Binding Mode Of Restriction Endonuclease Bcni
To Cognate Dna
pdb|3IMB|D Chain D, Alternative Binding Mode Of Restriction Endonuclease Bcni
To Cognate Dna
Length = 238
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 22 YTTESEVHYANNYTTEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFAQ 76
+ +E ++Y + Y + +D++ + E L+LV A T G + PE F +
Sbjct: 130 HASEINLYYQDEY------LSTWDLNLSKIEKLVLVFAETIGRANSPEEQFHFTK 178
>pdb|1PP0|A Chain A, Volvatoxin A2 In Monoclinic Crystal
pdb|1PP0|B Chain B, Volvatoxin A2 In Monoclinic Crystal
pdb|1PP0|C Chain C, Volvatoxin A2 In Monoclinic Crystal
pdb|1PP0|D Chain D, Volvatoxin A2 In Monoclinic Crystal
pdb|1PP6|A Chain A, Vva2 (Strip Crystal Form)
pdb|1PP6|B Chain B, Vva2 (Strip Crystal Form)
pdb|1PP6|C Chain C, Vva2 (Strip Crystal Form)
pdb|1PP6|D Chain D, Vva2 (Strip Crystal Form)
pdb|1PP6|E Chain E, Vva2 (Strip Crystal Form)
pdb|1VGF|A Chain A, Volvatoxin A2 (Diamond Crystal Form)
pdb|1VGF|B Chain B, Volvatoxin A2 (Diamond Crystal Form)
Length = 199
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 32 NNYTTEVLRMDEYDMSSIEHEA 53
+NYT E L D+YD S+I ++
Sbjct: 51 DNYTGEDLSFDKYDQSTINQQS 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.127 0.349
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,852,764
Number of Sequences: 62578
Number of extensions: 95935
Number of successful extensions: 179
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 164
Number of HSP's gapped (non-prelim): 22
length of query: 95
length of database: 14,973,337
effective HSP length: 62
effective length of query: 33
effective length of database: 11,093,501
effective search space: 366085533
effective search space used: 366085533
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 45 (21.9 bits)