Query psy8996
Match_columns 95
No_of_seqs 178 out of 1019
Neff 7.5
Searched_HMMs 29240
Date Sat Aug 17 01:00:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8996.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8996hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hr4_A Nitric oxide synthase, 99.9 1.5E-24 5.3E-29 151.2 9.4 77 5-81 40-116 (219)
2 1tll_A Nitric-oxide synthase, 99.9 7E-23 2.4E-27 161.1 9.3 77 5-81 11-87 (688)
3 3qe2_A CPR, P450R, NADPH--cyto 99.8 5.1E-21 1.7E-25 149.1 6.8 87 3-92 16-108 (618)
4 2bpo_A CPR, P450R, NADPH-cytoc 99.8 4.9E-20 1.7E-24 144.9 9.1 86 5-92 49-137 (682)
5 1bvy_F Protein (cytochrome P45 99.8 5.9E-19 2E-23 120.3 9.8 76 4-81 20-96 (191)
6 1ykg_A SIR-FP, sulfite reducta 99.8 6.4E-19 2.2E-23 117.0 7.7 76 5-80 9-85 (167)
7 3f6r_A Flavodoxin; FMN binding 99.8 1.7E-18 5.7E-23 112.1 6.7 76 6-81 2-81 (148)
8 2hna_A Protein MIOC, flavodoxi 99.7 2.2E-18 7.6E-23 111.8 7.1 74 6-81 2-76 (147)
9 5nul_A Flavodoxin; electron tr 99.7 6.8E-18 2.3E-22 108.1 8.3 73 8-80 1-75 (138)
10 1yob_A Flavodoxin 2, flavodoxi 99.7 3.7E-18 1.3E-22 114.2 5.5 76 6-81 1-84 (179)
11 2bmv_A Flavodoxin; electron tr 99.7 5.3E-18 1.8E-22 111.8 4.1 71 6-79 2-72 (164)
12 1czn_A Flavodoxin; FMN binding 99.7 2.1E-17 7.1E-22 109.0 6.1 77 6-82 1-77 (169)
13 1obo_A Flavodoxin; electron tr 99.7 5.2E-17 1.8E-21 107.0 7.0 75 6-81 2-76 (169)
14 1f4p_A Flavodoxin; electron tr 99.7 6.3E-17 2.2E-21 104.4 7.2 75 7-81 2-80 (147)
15 2fcr_A Flavodoxin; electron tr 99.7 7.2E-17 2.5E-21 107.3 7.5 76 7-83 1-82 (173)
16 2wc1_A Flavodoxin; electron tr 99.7 1.3E-17 4.5E-22 111.6 3.8 76 6-81 2-85 (182)
17 1ag9_A Flavodoxin; electron tr 99.7 4.3E-17 1.5E-21 108.7 5.7 75 7-82 2-76 (175)
18 2fz5_A Flavodoxin; alpha/beta 99.6 6.8E-16 2.3E-20 97.9 7.5 73 8-80 2-76 (137)
19 3fni_A Putative diflavin flavo 99.6 3.4E-15 1.2E-19 98.7 4.9 77 3-82 2-84 (159)
20 3hly_A Flavodoxin-like domain; 99.5 1.1E-14 3.9E-19 96.1 6.2 72 7-81 2-78 (161)
21 2xod_A NRDI protein, NRDI; fla 99.5 6.8E-14 2.3E-18 88.1 5.5 60 9-80 2-61 (119)
22 1rlj_A NRDI protein; flavoprot 99.4 4.1E-14 1.4E-18 92.2 1.6 61 6-77 9-69 (139)
23 2ark_A Flavodoxin; FMN, struct 99.4 1.2E-12 4E-17 87.7 6.0 74 6-80 5-80 (188)
24 1e5d_A Rubredoxin\:oxygen oxid 99.2 2E-11 7E-16 89.0 7.8 77 5-82 252-333 (402)
25 1ycg_A Nitric oxide reductase; 99.2 4E-11 1.4E-15 87.3 6.7 75 5-80 251-330 (398)
26 2q9u_A A-type flavoprotein; fl 99.1 5.1E-11 1.8E-15 87.5 6.2 75 5-80 256-335 (414)
27 2a5l_A Trp repressor binding p 99.1 7.4E-11 2.5E-15 78.7 6.4 74 6-80 6-99 (200)
28 2ohh_A Type A flavoprotein FPR 99.1 6.8E-11 2.3E-15 86.2 6.0 77 5-82 256-337 (404)
29 4dik_A Flavoprotein; TM0755, e 99.1 2.5E-10 8.4E-15 85.3 8.4 79 4-83 264-350 (410)
30 3b6i_A Flavoprotein WRBA; flav 99.1 1.5E-10 5.1E-15 77.2 5.9 73 7-80 3-96 (198)
31 2zki_A 199AA long hypothetical 99.0 4.3E-10 1.5E-14 75.2 5.4 72 6-79 5-97 (199)
32 4ici_A Putative flavoprotein; 99.0 1.2E-09 4.2E-14 72.6 7.4 69 5-78 13-113 (171)
33 3d7n_A Flavodoxin, WRBA-like p 99.0 6E-10 2E-14 74.9 5.4 70 5-79 6-81 (193)
34 3edo_A Flavoprotein, putative 99.0 1.1E-09 3.6E-14 71.3 6.4 73 6-79 4-103 (151)
35 3klb_A Putative flavoprotein; 99.0 1.1E-09 3.8E-14 72.0 5.8 69 5-78 4-104 (162)
36 1ydg_A Trp repressor binding p 98.9 1.3E-09 4.5E-14 73.6 5.1 73 6-79 7-105 (211)
37 3n3a_C Protein NRDI; ribonucle 98.9 2E-09 6.9E-14 71.2 5.7 63 9-79 24-90 (153)
38 2vzf_A NADH-dependent FMN redu 98.7 1.2E-08 4E-13 68.7 4.3 73 6-79 3-96 (197)
39 1rtt_A Conserved hypothetical 98.4 1.4E-07 4.9E-12 62.8 3.1 74 6-80 7-100 (193)
40 1t5b_A Acyl carrier protein ph 98.3 1E-06 3.6E-11 58.3 6.2 74 6-80 2-114 (201)
41 3gfs_A FMN-dependent NADPH-azo 98.3 8.4E-07 2.9E-11 58.2 5.4 69 7-80 2-91 (174)
42 1t0i_A YLR011WP; FMN binding p 98.3 4.9E-07 1.7E-11 60.0 3.2 72 7-79 2-111 (191)
43 2q62_A ARSH; alpha/beta, flavo 98.2 3.4E-06 1.2E-10 59.1 6.9 75 5-80 34-126 (247)
44 3fvw_A Putative NAD(P)H-depend 98.2 3.7E-06 1.2E-10 56.4 6.2 74 6-80 3-95 (192)
45 1sqs_A Conserved hypothetical 98.1 6.3E-06 2.1E-10 56.8 6.1 72 7-79 3-106 (242)
46 1rli_A Trp repressor binding p 98.1 6.7E-06 2.3E-10 53.7 5.4 69 7-80 5-99 (184)
47 2fzv_A Putative arsenical resi 98.0 9.8E-06 3.4E-10 57.9 5.7 75 5-80 58-151 (279)
48 4hs4_A Chromate reductase; tri 97.9 2.1E-05 7.3E-10 53.2 5.1 74 6-80 7-101 (199)
49 2hpv_A FMN-dependent NADH-azor 97.9 2.9E-05 9.8E-10 51.9 5.6 74 6-80 2-122 (208)
50 3s2y_A Chromate reductase; ura 96.8 6.1E-06 2.1E-10 55.8 0.0 74 6-80 7-101 (199)
51 3u7r_A NADPH-dependent FMN red 97.6 0.00012 4.2E-09 49.3 6.0 74 6-80 3-95 (190)
52 3r6w_A FMN-dependent NADH-azor 97.4 0.00039 1.3E-08 46.7 6.5 74 6-80 2-115 (212)
53 3svl_A Protein YIEF; E. coli C 97.3 0.00019 6.5E-09 48.2 3.3 74 6-80 5-100 (193)
54 1d4a_A DT-diaphorase, quinone 97.2 0.0012 4.2E-08 46.3 7.1 73 7-80 4-121 (273)
55 3lcm_A SMU.1420, putative oxid 97.1 0.0012 4.1E-08 44.1 6.3 73 7-80 2-101 (196)
56 3k1y_A Oxidoreductase; structu 97.1 0.00034 1.2E-08 47.1 3.5 74 6-80 12-113 (191)
57 3f2v_A General stress protein 96.9 0.00043 1.5E-08 46.7 2.5 74 6-80 2-86 (192)
58 3rpe_A MDAB, modulator of drug 96.9 0.0029 1E-07 43.5 6.7 75 6-81 26-112 (218)
59 3tem_A Ribosyldihydronicotinam 96.9 0.0022 7.4E-08 44.1 6.1 74 6-80 2-120 (228)
60 2amj_A Modulator of drug activ 96.9 0.0035 1.2E-07 42.1 6.6 73 6-79 13-97 (204)
61 3p0r_A Azoreductase; structura 96.2 0.011 3.7E-07 39.9 5.5 74 6-80 5-120 (211)
62 3u7i_A FMN-dependent NADH-azor 95.4 0.044 1.5E-06 37.3 6.1 75 6-81 5-123 (223)
63 4gi5_A Quinone reductase; prot 93.9 0.22 7.5E-06 35.3 7.0 73 7-80 24-140 (280)
64 3l9w_A Glutathione-regulated p 93.5 0.058 2E-06 40.0 3.4 74 6-80 237-320 (413)
65 3ha2_A NADPH-quinone reductase 92.3 0.21 7.2E-06 32.9 4.6 69 7-79 2-78 (177)
66 1tvm_A PTS system, galactitol- 89.2 1.4 4.8E-05 26.7 6.0 50 6-56 22-74 (113)
67 1t0b_A THUA-like protein; treh 89.0 0.43 1.5E-05 33.1 3.8 58 23-80 34-96 (252)
68 3rht_A (gatase1)-like protein; 85.8 0.94 3.2E-05 31.7 4.1 57 23-80 19-78 (259)
69 3nbm_A PTS system, lactose-spe 85.0 4.1 0.00014 24.7 6.3 48 9-57 9-59 (108)
70 1jeo_A MJ1247, hypothetical pr 83.4 3.9 0.00013 25.8 6.0 68 7-82 41-109 (180)
71 4e5v_A Putative THUA-like prot 82.5 5.3 0.00018 28.0 6.9 70 7-80 6-85 (281)
72 1vim_A Hypothetical protein AF 78.6 6.1 0.00021 25.7 5.8 67 7-81 48-115 (200)
73 1m3s_A Hypothetical protein YC 78.4 6.5 0.00022 24.9 5.8 67 7-81 38-105 (186)
74 4gud_A Imidazole glycerol phos 78.1 2.3 8E-05 27.8 3.6 52 7-71 4-56 (211)
75 3qyf_A Crispr-associated prote 75.0 4.6 0.00016 29.3 4.7 37 9-45 95-132 (324)
76 1vkr_A Mannitol-specific PTS s 72.6 9.1 0.00031 23.6 5.1 39 6-44 14-56 (125)
77 3eeq_A Putative cobalamin bios 72.0 5.5 0.00019 28.8 4.5 53 9-61 10-64 (336)
78 3ju3_A Probable 2-oxoacid ferr 70.9 5.2 0.00018 24.2 3.7 35 9-46 18-52 (118)
79 2l2q_A PTS system, cellobiose- 70.8 4.2 0.00014 24.3 3.2 46 8-55 7-55 (109)
80 2kyr_A Fructose-like phosphotr 70.6 7.8 0.00027 23.7 4.4 57 6-62 6-71 (111)
81 1e2b_A Enzyme IIB-cellobiose; 70.3 7.6 0.00026 23.2 4.2 49 6-56 4-55 (106)
82 3czc_A RMPB; alpha/beta sandwi 69.4 2.1 7.1E-05 25.7 1.5 48 6-54 19-70 (110)
83 2i9o_A MHB8A peptide; beta-hai 68.0 4.6 0.00016 19.5 2.3 16 18-33 22-37 (37)
84 2b4n_A Gastric inhibitory poly 67.4 5.4 0.00018 20.4 2.6 19 71-89 19-37 (42)
85 4eg0_A D-alanine--D-alanine li 66.5 14 0.00049 25.4 5.6 47 3-49 11-61 (317)
86 2xhz_A KDSD, YRBH, arabinose 5 66.5 12 0.00043 23.4 5.0 69 8-82 51-123 (183)
87 2l1l_A CAMP-dependent protein 66.0 1.9 6.5E-05 20.1 0.6 16 13-28 1-16 (27)
88 2i9n_A MHB4A peptide; beta-hai 65.5 3.7 0.00013 19.3 1.6 16 18-33 18-33 (33)
89 1iow_A DD-ligase, DDLB, D-ALA\ 64.6 29 0.00098 23.2 8.8 46 5-50 2-51 (306)
90 3etn_A Putative phosphosugar i 64.5 27 0.00093 22.9 7.5 69 6-80 59-131 (220)
91 3fj1_A Putative phosphosugar i 63.6 20 0.00068 25.5 6.0 52 5-58 90-142 (344)
92 2r48_A Phosphotransferase syst 63.4 9.8 0.00033 23.1 3.7 55 7-61 4-67 (106)
93 2m1z_A LMO0427 protein; homolo 63.4 11 0.00038 22.8 4.0 53 8-60 5-66 (106)
94 2i2w_A Phosphoheptose isomeras 62.8 11 0.00039 24.5 4.3 52 4-57 129-181 (212)
95 3lzd_A DPH2; diphthamide biosy 61.8 8.8 0.0003 28.3 3.9 48 6-53 265-314 (378)
96 3hba_A Putative phosphosugar i 61.1 35 0.0012 24.1 6.9 52 5-58 89-141 (334)
97 2r4q_A Phosphotransferase syst 61.0 9.8 0.00034 23.1 3.4 55 7-61 4-67 (106)
98 1m3s_A Hypothetical protein YC 60.7 9.9 0.00034 24.0 3.6 54 4-59 77-131 (186)
99 3trj_A Phosphoheptose isomeras 60.6 18 0.0006 23.6 4.9 33 4-36 112-144 (201)
100 3sho_A Transcriptional regulat 60.2 19 0.00063 22.6 4.9 37 4-40 85-121 (187)
101 2xbl_A Phosphoheptose isomeras 58.2 13 0.00045 23.5 4.0 33 4-36 114-146 (198)
102 1h05_A 3-dehydroquinate dehydr 58.2 17 0.00058 23.4 4.3 76 3-85 15-97 (146)
103 3fxa_A SIS domain protein; str 58.1 18 0.00061 23.2 4.6 67 8-80 47-117 (201)
104 3etn_A Putative phosphosugar i 57.9 17 0.00058 23.9 4.6 53 4-58 104-159 (220)
105 2yva_A DNAA initiator-associat 56.8 16 0.00055 23.2 4.2 53 4-58 107-163 (196)
106 1x92_A APC5045, phosphoheptose 56.4 12 0.00041 23.9 3.5 46 4-51 111-156 (199)
107 3sqn_A Conserved domain protei 54.2 16 0.00055 27.3 4.3 57 3-62 396-452 (485)
108 2aml_A SIS domain protein; 469 54.1 33 0.0011 24.5 5.9 33 4-36 95-128 (373)
109 1jeo_A MJ1247, hypothetical pr 54.0 19 0.00064 22.5 4.1 54 4-60 80-134 (180)
110 1dih_A Dihydrodipicolinate red 54.0 16 0.00055 25.2 4.0 40 5-44 118-161 (273)
111 1bba_A Bovine pancreatic polyp 53.6 9.6 0.00033 18.8 2.0 18 63-80 9-26 (36)
112 3tbf_A Glucosamine--fructose-6 53.5 20 0.00068 25.8 4.6 53 5-58 100-153 (372)
113 2yva_A DNAA initiator-associat 51.1 44 0.0015 21.1 6.4 70 7-82 42-136 (196)
114 2xhz_A KDSD, YRBH, arabinose 5 50.9 15 0.00052 23.0 3.3 54 4-59 94-148 (183)
115 2zfz_A Arginine repressor; DNA 50.7 31 0.0011 19.3 4.8 53 11-80 25-77 (79)
116 2uyg_A 3-dehydroquinate dehydr 50.6 19 0.00063 23.3 3.6 76 3-85 12-95 (149)
117 1tk9_A Phosphoheptose isomeras 49.9 15 0.00051 23.1 3.1 33 4-36 108-140 (188)
118 3fxa_A SIS domain protein; str 47.1 10 0.00035 24.3 2.0 55 4-60 90-145 (201)
119 3tqi_A GMP synthase [glutamine 45.4 44 0.0015 25.2 5.5 46 6-57 11-59 (527)
120 1uqr_A 3-dehydroquinate dehydr 44.7 18 0.00062 23.5 2.8 38 3-42 14-52 (154)
121 3g68_A Putative phosphosugar i 44.1 49 0.0017 23.5 5.4 49 6-56 82-131 (352)
122 1tzb_A Glucose-6-phosphate iso 43.7 74 0.0025 21.8 6.2 63 9-81 40-105 (302)
123 1f8p_A Neuropeptide Y (PNPY); 42.8 23 0.00077 17.5 2.4 18 63-80 9-26 (37)
124 1vim_A Hypothetical protein AF 42.8 20 0.00069 23.1 3.0 52 4-57 87-139 (200)
125 2a3n_A Putative glucosamine-fr 42.0 31 0.0011 24.4 4.0 32 5-36 101-132 (355)
126 3c5t_B Exendin-4, exenatide; l 41.7 12 0.00039 17.9 1.2 12 70-81 10-21 (31)
127 4ehd_A Caspase-3; caspase, apo 41.6 20 0.0007 25.0 3.0 61 1-64 39-123 (277)
128 1gtz_A 3-dehydroquinate dehydr 41.4 18 0.00063 23.5 2.5 75 3-84 19-101 (156)
129 2pcq_A Putative dihydrodipicol 41.4 54 0.0018 22.6 5.1 33 7-39 62-94 (283)
130 1b4b_A Arginine repressor; cor 41.2 32 0.0011 18.9 3.2 52 12-80 18-69 (71)
131 2poc_A D-fructose-6- PH, isome 40.9 62 0.0021 23.0 5.5 52 5-58 96-148 (367)
132 2vc6_A MOSA, dihydrodipicolina 40.9 50 0.0017 22.8 4.9 42 3-44 65-106 (292)
133 2id1_A Hypothetical protein; a 40.1 53 0.0018 20.5 4.5 40 19-62 3-44 (130)
134 3eua_A Putative fructose-amino 39.9 30 0.001 24.3 3.7 52 4-57 72-124 (329)
135 3fkj_A Putative phosphosugar i 39.7 22 0.00076 25.3 3.0 53 4-58 87-140 (347)
136 3na8_A Putative dihydrodipicol 39.6 53 0.0018 23.1 4.9 39 2-40 88-126 (315)
137 3pam_A Transmembrane protein; 39.5 40 0.0014 22.2 4.1 27 16-42 137-164 (259)
138 3fkr_A L-2-keto-3-deoxyarabona 39.3 45 0.0015 23.4 4.5 38 3-40 73-110 (309)
139 3knz_A Putative sugar binding 39.1 27 0.00093 25.1 3.4 44 5-50 96-139 (366)
140 1j5x_A Glucosamine-6-phosphate 39.0 32 0.0011 24.2 3.7 49 8-58 102-151 (342)
141 3d0c_A Dihydrodipicolinate syn 38.7 51 0.0018 23.1 4.7 41 3-44 77-117 (314)
142 3lkv_A Uncharacterized conserv 38.6 51 0.0017 22.4 4.6 38 5-42 140-178 (302)
143 1tzb_A Glucose-6-phosphate iso 38.6 76 0.0026 21.8 5.6 35 5-39 78-112 (302)
144 3flu_A DHDPS, dihydrodipicolin 38.6 63 0.0021 22.4 5.1 36 3-38 72-107 (297)
145 1xky_A Dihydrodipicolinate syn 38.2 63 0.0021 22.5 5.1 40 3-42 77-116 (301)
146 2ehh_A DHDPS, dihydrodipicolin 38.1 59 0.002 22.5 4.9 40 3-42 65-104 (294)
147 2zj3_A Glucosamine--fructose-6 38.1 74 0.0025 22.7 5.6 32 5-36 106-137 (375)
148 2k8s_A Thioredoxin; dimer, str 38.0 40 0.0014 17.9 3.4 37 7-43 3-40 (80)
149 1gqo_A Dehydroquinase; dehydra 37.7 17 0.00056 23.4 1.8 76 3-85 13-95 (143)
150 3lvu_A ABC transporter, peripl 37.7 44 0.0015 22.0 4.1 33 10-42 132-165 (258)
151 3qze_A DHDPS, dihydrodipicolin 37.6 65 0.0022 22.6 5.1 38 2-39 87-124 (314)
152 2dko_A Caspase-3; low barrier 37.3 19 0.00066 22.7 2.1 63 16-81 37-118 (146)
153 2bf9_A Pancreatic hormone; tur 37.1 13 0.00044 18.3 1.0 18 63-80 9-26 (36)
154 3a5f_A Dihydrodipicolinate syn 37.1 69 0.0023 22.1 5.1 42 3-44 66-107 (291)
155 3ups_A Iojap-like protein; PSI 36.9 77 0.0026 19.9 5.3 41 17-61 17-59 (136)
156 3l21_A DHDPS, dihydrodipicolin 36.2 50 0.0017 23.1 4.3 35 3-37 80-114 (304)
157 3daq_A DHDPS, dihydrodipicolin 35.8 57 0.0019 22.6 4.5 37 3-39 67-103 (292)
158 2p5m_A Arginine repressor; alp 35.7 31 0.0011 19.5 2.7 51 13-80 31-81 (83)
159 1qtn_A Caspase-8; apoptosis, d 35.6 33 0.0011 22.0 3.0 63 16-81 51-133 (164)
160 1xxa_A ARGR, arginine represso 35.5 52 0.0018 18.4 3.6 54 11-80 19-72 (78)
161 3b4u_A Dihydrodipicolinate syn 35.1 75 0.0026 22.0 5.1 38 2-39 67-104 (294)
162 1fx0_B ATP synthase beta chain 35.0 52 0.0018 25.1 4.4 53 7-81 167-219 (498)
163 3n8k_A 3-dehydroquinate dehydr 34.7 25 0.00085 23.2 2.3 76 3-85 41-123 (172)
164 3lwz_A 3-dehydroquinate dehydr 34.7 21 0.00072 23.1 1.9 76 3-85 20-102 (153)
165 1moq_A Glucosamine 6-phosphate 34.5 67 0.0023 22.7 4.8 55 4-59 97-152 (368)
166 2o5a_A BH1328 protein; BHR21, 33.8 54 0.0019 20.2 3.7 40 19-62 3-44 (125)
167 3cpr_A Dihydrodipicolinate syn 33.6 76 0.0026 22.1 4.9 37 3-39 81-117 (304)
168 1o5k_A DHDPS, dihydrodipicolin 33.4 61 0.0021 22.6 4.4 38 3-40 77-114 (306)
169 2gk3_A Putative cytoplasmic pr 33.3 27 0.00092 23.7 2.4 60 17-79 40-116 (256)
170 3si9_A DHDPS, dihydrodipicolin 33.2 76 0.0026 22.3 4.9 38 2-39 86-123 (315)
171 1t5q_A Gastric inhibitory poly 33.2 27 0.00092 16.4 1.7 11 71-81 19-29 (30)
172 3s5o_A 4-hydroxy-2-oxoglutarat 33.1 96 0.0033 21.6 5.4 38 2-39 78-115 (307)
173 3m5v_A DHDPS, dihydrodipicolin 32.8 81 0.0028 21.9 5.0 37 3-39 72-109 (301)
174 1f6k_A N-acetylneuraminate lya 32.3 61 0.0021 22.4 4.2 40 3-42 69-108 (293)
175 2yxg_A DHDPS, dihydrodipicolin 32.3 66 0.0023 22.2 4.4 37 3-39 65-101 (289)
176 4fbj_A CIF, hypothetical prote 32.2 2.4 8.2E-05 29.4 -3.0 64 20-85 108-177 (261)
177 3tak_A DHDPS, dihydrodipicolin 31.9 68 0.0023 22.1 4.4 36 3-38 66-101 (291)
178 3lap_A Arginine repressor; arg 31.9 1E+02 0.0036 19.9 5.0 50 14-80 119-168 (170)
179 3som_A Methylmalonic aciduria 31.9 16 0.00056 26.0 1.2 64 12-81 2-74 (286)
180 2qne_A Putative methyltransfer 31.5 14 0.00048 28.2 0.8 13 2-14 278-290 (495)
181 3qfe_A Putative dihydrodipicol 31.2 53 0.0018 23.1 3.8 37 3-39 76-112 (318)
182 2rfg_A Dihydrodipicolinate syn 30.6 69 0.0024 22.2 4.3 42 3-44 65-106 (297)
183 3u80_A 3-dehydroquinate dehydr 30.6 46 0.0016 21.4 3.1 75 4-85 18-102 (151)
184 3a9s_A D-arabinose isomerase; 30.3 56 0.0019 25.5 4.0 49 17-65 37-98 (595)
185 2ojp_A DHDPS, dihydrodipicolin 30.2 65 0.0022 22.2 4.1 37 3-39 66-102 (292)
186 3soz_A ORF 245 protein, cytopl 30.2 28 0.00097 23.9 2.1 57 24-80 36-110 (248)
187 2wkj_A N-acetylneuraminate lya 30.1 70 0.0024 22.3 4.2 37 3-39 76-112 (303)
188 3t66_A Nickel ABC transporter 30.0 1.6E+02 0.0055 21.5 6.6 32 12-43 336-368 (496)
189 1xx6_A Thymidine kinase; NESG, 29.9 1E+02 0.0034 19.9 4.8 34 7-40 9-43 (191)
190 3dz1_A Dihydrodipicolinate syn 29.6 58 0.002 22.8 3.7 36 3-39 73-108 (313)
191 1o1y_A Conserved hypothetical 29.3 78 0.0027 21.0 4.2 48 9-59 16-65 (239)
192 3o6q_A Stage II sporulation pr 29.1 55 0.0019 21.1 3.2 35 8-42 38-73 (157)
193 2v9d_A YAGE; dihydrodipicolini 29.0 77 0.0026 22.6 4.4 37 3-39 96-132 (343)
194 3cvj_A Putative phosphoheptose 29.0 40 0.0014 22.3 2.7 37 5-43 107-143 (243)
195 3dhx_A Methionine import ATP-b 28.9 59 0.002 19.0 3.2 34 6-39 62-95 (106)
196 4f8c_A Cycle inhibiting factor 28.7 17 0.00059 25.3 0.8 72 15-88 129-207 (275)
197 3e96_A Dihydrodipicolinate syn 28.4 51 0.0017 23.1 3.3 37 2-39 76-112 (316)
198 2c61_A A-type ATP synthase non 27.8 53 0.0018 24.8 3.4 22 6-28 153-174 (469)
199 4dpp_A DHDPS 2, dihydrodipicol 27.7 80 0.0028 22.9 4.3 37 3-39 124-160 (360)
200 3efy_A CIF (cell cycle inhibit 27.6 13 0.00045 24.6 0.0 72 15-88 35-113 (195)
201 3ijp_A DHPR, dihydrodipicolina 27.6 82 0.0028 22.1 4.2 37 7-43 136-176 (288)
202 2r8w_A AGR_C_1641P; APC7498, d 27.5 73 0.0025 22.6 4.0 40 3-42 99-138 (332)
203 3eb2_A Putative dihydrodipicol 27.4 40 0.0014 23.5 2.6 37 3-39 69-105 (300)
204 2g49_C Glucagon preproprotein; 27.2 32 0.0011 16.0 1.4 10 71-80 19-28 (29)
205 3sir_A Caspase; hydrolase; 2.6 27.0 24 0.00081 24.3 1.3 53 17-72 41-108 (259)
206 2l63_A GLP-2, glucagon-like pe 26.9 40 0.0014 16.1 1.7 11 71-81 19-29 (33)
207 3h5d_A DHDPS, dihydrodipicolin 26.3 1.6E+02 0.0053 20.6 5.5 32 3-34 72-103 (311)
208 1div_A Ribosomal protein L9; r 26.2 47 0.0016 21.1 2.5 19 9-29 87-105 (149)
209 2hiy_A Hypothetical protein; C 26.2 64 0.0022 21.0 3.2 33 5-39 44-78 (183)
210 3iol_B Glucagon; receptor-liga 25.9 35 0.0012 16.0 1.4 11 70-80 18-28 (31)
211 2cxn_A Glucose-6-phosphate iso 25.8 29 0.00098 26.9 1.7 45 36-80 179-231 (557)
212 4f3y_A DHPR, dihydrodipicolina 25.5 1E+02 0.0035 21.2 4.4 39 6-44 120-162 (272)
213 1umd_B E1-beta, 2-OXO acid deh 25.1 32 0.0011 24.1 1.7 33 10-45 208-240 (324)
214 2khf_A PLNJ; anti-microbial, b 24.7 43 0.0015 14.8 1.5 11 70-80 2-12 (26)
215 1nkw_F 50S ribosomal protein L 24.7 65 0.0022 20.4 3.0 18 9-28 85-102 (146)
216 2a33_A Hypothetical protein; s 24.7 45 0.0015 22.3 2.3 29 7-35 15-47 (215)
217 2r60_A Glycosyl transferase, g 24.4 1.2E+02 0.0043 21.6 4.8 29 15-43 31-60 (499)
218 2nn3_C Caspase-1; cysteine pro 23.7 73 0.0025 22.6 3.4 60 2-64 56-138 (310)
219 1w85_B Pyruvate dehydrogenase 23.7 36 0.0012 23.9 1.7 33 10-45 207-239 (324)
220 2c4w_A 3-dehydroquinate dehydr 23.5 52 0.0018 21.8 2.4 76 3-85 22-107 (176)
221 3m3p_A Glutamine amido transfe 23.4 1.7E+02 0.006 19.6 6.7 52 6-60 4-57 (250)
222 1jrj_A Exendin-4; Trp-CAGE, GL 23.1 39 0.0013 16.8 1.3 11 71-81 19-29 (39)
223 2qe7_A ATP synthase subunit al 22.9 1.1E+02 0.0039 23.3 4.5 25 6-30 163-187 (502)
224 2j32_A Caspase-3; Pro-caspase3 22.8 67 0.0023 21.7 3.0 46 16-64 37-95 (250)
225 1f1j_A Caspase-7 protease; cas 22.7 36 0.0012 24.1 1.6 45 17-64 91-148 (305)
226 2iuy_A Avigt4, glycosyltransfe 22.5 1.3E+02 0.0044 20.1 4.4 29 15-43 28-57 (342)
227 1pyo_A Caspase-2; apoptosis, c 22.4 64 0.0022 20.7 2.7 66 16-84 54-140 (167)
228 1m72_A Caspase-1; caspase, cys 22.2 70 0.0024 22.1 3.0 46 16-64 52-110 (272)
229 3rqt_A Putative uncharacterize 22.2 2.3E+02 0.0078 20.6 6.1 27 17-43 339-366 (486)
230 2rrh_A VIP peptides; peptide h 22.2 48 0.0016 15.3 1.5 10 71-80 19-28 (29)
231 3gx1_A LIN1832 protein; APC633 22.0 1.4E+02 0.0048 18.1 5.8 37 5-42 2-39 (130)
232 1nri_A Hypothetical protein HI 21.9 67 0.0023 22.2 2.9 53 4-58 138-191 (306)
233 8tfv_A Protein (thanatin); bac 21.8 34 0.0012 14.4 0.8 14 5-18 3-17 (21)
234 2vpi_A GMP synthase; guanine m 21.8 83 0.0028 20.6 3.2 47 5-57 24-73 (218)
235 1d1q_A Tyrosine phosphatase (E 21.7 75 0.0026 19.9 2.9 29 31-60 68-96 (161)
236 2ql9_A Caspase-7; cysteine pro 21.7 31 0.0011 22.5 1.0 46 16-64 65-123 (173)
237 2wzn_A TET3, 354AA long hypoth 21.2 84 0.0029 20.5 3.2 26 14-39 23-50 (354)
238 3tj4_A Mandelate racemase; eno 21.2 1E+02 0.0035 21.9 3.8 73 5-80 135-222 (372)
239 2i2x_B MTAC, methyltransferase 20.8 1.3E+02 0.0043 20.3 4.0 73 6-81 122-201 (258)
240 3kip_A 3-dehydroquinase, type 20.7 88 0.003 20.5 3.0 76 3-85 27-112 (167)
241 2r9v_A ATP synthase subunit al 20.6 1E+02 0.0035 23.6 3.8 24 6-29 176-199 (515)
242 2q8n_A Glucose-6-phosphate iso 20.6 83 0.0028 23.6 3.3 45 36-80 117-169 (460)
243 1vm6_A DHPR, dihydrodipicolina 20.3 1.4E+02 0.0049 20.3 4.2 38 6-44 100-141 (228)
244 1gpm_A GMP synthetase, XMP ami 20.2 79 0.0027 23.8 3.1 46 6-57 8-56 (525)
245 2ozl_B PDHE1-B, pyruvate dehyd 20.1 39 0.0013 24.0 1.4 33 10-45 222-254 (341)
No 1
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=99.91 E-value=1.5e-24 Score=151.25 Aligned_cols=77 Identities=32% Similarity=0.537 Sum_probs=72.6
Q ss_pred cccccEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCCCCCcccccccCeEEEEeccCCCCCCCCcHHHHHHHHhhC
Q psy8996 5 EKREPAFSISEVHYANNYTTESEVHYANNYTTEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFAQNLHAL 81 (95)
Q Consensus 5 ~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~~~~l~~~~~vi~v~ST~G~Ge~Pdn~~~F~~~L~~~ 81 (95)
++++.|+|||+|||||.+|++|++.+.+|+.+++.+|+++++++|..++.+||+|||||+|+||+|++.||++|...
T Consensus 40 ~~kv~IlYgS~tGnte~~A~~La~~l~~g~~v~v~~l~~~~~~~l~~~~~vI~~tsTyG~Ge~Pdna~~F~~~L~~~ 116 (219)
T 3hr4_A 40 RVRVTILFATETGKSEALAWDLGALFSCAFNPKVVCMDKYRLSCLEEERLLLVVTSTFGNGDCPGNGEKLKKSLFML 116 (219)
T ss_dssp SCEEEEEEECSSSHHHHHHHHHHHHHTTTSEEEEEEGGGCCGGGGGTCSEEEEEEECBTTTBCCGGGHHHHHHHHHC
T ss_pred CCcEEEEEECCchHHHHHHHHHHHHHHcCCCeEEEEcccCCHhHhccCCeEEEEEeccCCCcCCHHHHHHHHHHHhc
Confidence 56889999999999999999998866789999999999999999999999999999999999999999999999875
No 2
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Probab=99.88 E-value=7e-23 Score=161.14 Aligned_cols=77 Identities=36% Similarity=0.670 Sum_probs=72.6
Q ss_pred cccccEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCCCCCcccccccCeEEEEeccCCCCCCCCcHHHHHHHHhhC
Q psy8996 5 EKREPAFSISEVHYANNYTTESEVHYANNYTTEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFAQNLHAL 81 (95)
Q Consensus 5 ~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~~~~l~~~~~vi~v~ST~G~Ge~Pdn~~~F~~~L~~~ 81 (95)
++++.|+|||+|||||.+|++|++.+++|+++++++|++|++.+|.+++++|||+||||+|+||+|++.||++|...
T Consensus 11 ~~k~~IlY~S~TG~te~~A~~l~~~l~~~~~~~v~~m~~~d~~~l~~~~~vl~vtsT~G~Gdpp~n~~~F~~~L~~~ 87 (688)
T 1tll_A 11 RVKATILYATETGKSQAYAKTLCEIFKHAFDAKAMSMEEYDIVHLEHEALVLVVTSTFGNGDPPENGEKFGCALMEM 87 (688)
T ss_dssp SCEEEEEEECSSSHHHHHHHHHHHHHTTTSEEEEEETTTSCTTSGGGCSEEEEEECCBTTTBCCGGGHHHHHHHHHH
T ss_pred CCeEEEEEECCchHHHHHHHHHHHHHhcCCCcEEeecccCChhHhccCceEEEEEcccCCCcCCHHHHHHHHHHHhc
Confidence 34689999999999999999999877789999999999999999999999999999999999999999999999876
No 3
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=99.83 E-value=5.1e-21 Score=149.06 Aligned_cols=87 Identities=20% Similarity=0.308 Sum_probs=74.2
Q ss_pred cccccccEEEeCCCchHHHHHHHHHH-HHhCCCceEEeeCCCCCccccc-----ccCeEEEEeccCCCCCCCCcHHHHHH
Q psy8996 3 IVEKREPAFSISEVHYANNYTTESEV-HYANNYTTEVLRMDEYDMSSIE-----HEALILVVASTFGNGDPPENGQEFAQ 76 (95)
Q Consensus 3 ~~~~~~~~~ygS~tG~ae~~A~~l~~-~~~~g~~~~v~~l~~~~~~~l~-----~~~~vi~v~ST~G~Ge~Pdn~~~F~~ 76 (95)
..++++.|+|||+|||||.+|++|++ +.++|+.+++.+++++++.++. +++.+||+|||||+|++|+|++.||+
T Consensus 16 ~~~~~i~I~YgS~tGnte~~A~~la~~l~~~g~~~~v~~~~~~~~~~l~~~~~~~~~~vi~~~sT~G~G~~pd~~~~F~~ 95 (618)
T 3qe2_A 16 KTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDNALVVFCMATYGEGDPTDNAQDFYD 95 (618)
T ss_dssp HHTCSEEEEEECSSSHHHHHHHHHHHHGGGGTCCEEEECGGGSCGGGGGGGGGSTTCEEEEEEECBGGGBCCGGGHHHHH
T ss_pred hcCCeEEEEEECChhHHHHHHHHHHHHHHhCCCceEEechHHcCHHHhhhcccccCcEEEEEcCccCCCCCCHHHHHHHH
Confidence 34578999999999999999999987 4568999999999999988774 36799999999999999999999999
Q ss_pred HHhhCCCCCccccCCC
Q psy8996 77 NLHALRIGEDANNSIS 92 (95)
Q Consensus 77 ~L~~~~~~~~~l~~l~ 92 (95)
+|.+.. ..|+|++
T Consensus 96 ~L~~~~---~~l~~~~ 108 (618)
T 3qe2_A 96 WLQETD---VDLSGVK 108 (618)
T ss_dssp HHHHCC---CCCTTCE
T ss_pred HHhhcc---ccccCCE
Confidence 998743 2355553
No 4
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=99.81 E-value=4.9e-20 Score=144.87 Aligned_cols=86 Identities=17% Similarity=0.284 Sum_probs=75.2
Q ss_pred cccccEEEeCCCchHHHHHHHHHH-HH-hCCCceEEeeCCCCCccccccc-CeEEEEeccCCCCCCCCcHHHHHHHHhhC
Q psy8996 5 EKREPAFSISEVHYANNYTTESEV-HY-ANNYTTEVLRMDEYDMSSIEHE-ALILVVASTFGNGDPPENGQEFAQNLHAL 81 (95)
Q Consensus 5 ~~~~~~~ygS~tG~ae~~A~~l~~-~~-~~g~~~~v~~l~~~~~~~l~~~-~~vi~v~ST~G~Ge~Pdn~~~F~~~L~~~ 81 (95)
.+++.|+|||+|||||.+|++|++ +. +.|+.+++.+++++++.++.++ +.+||++||||+|++|+|+..||++|...
T Consensus 49 ~~ki~IlY~S~tGnte~~A~~ia~~l~~~~g~~v~v~~l~~~~~~~l~~~~~~vi~~~sT~G~G~~p~~~~~F~~~l~~~ 128 (682)
T 2bpo_A 49 NKNYLVLYASQTGTAEGFAKAFSKELVAKFNLNVMCADVENYDFESLNDVPVIVSIFISTYGEGDFPDGAVNFEDFICNA 128 (682)
T ss_dssp TCSEEEEEECSSSHHHHHHHHHHHHHHHHHCCCEEEEETTSSCGGGGGGCCSEEEEEEECBTTTBCCSSCHHHHHHHHTC
T ss_pred CCeEEEEEECCchHHHHHHHHHHHHhHHhcCCceEEeehHHCCHHHHhhcCCeEEEEeCccCCCCCCHHHHHHHHHHHhc
Confidence 457899999999999999999987 44 5789999999999999999999 99999999999999999999999999875
Q ss_pred CCCCccccCCC
Q psy8996 82 RIGEDANNSIS 92 (95)
Q Consensus 82 ~~~~~~l~~l~ 92 (95)
+. ..|++++
T Consensus 129 ~~--~~L~~~~ 137 (682)
T 2bpo_A 129 EA--GALSNLR 137 (682)
T ss_dssp CT--TSSTTCE
T ss_pred cc--hhccCCE
Confidence 42 2355543
No 5
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=99.79 E-value=5.9e-19 Score=120.34 Aligned_cols=76 Identities=18% Similarity=0.331 Sum_probs=67.3
Q ss_pred ccccccEEEeCCCchHHHHHHHHHHHH-hCCCceEEeeCCCCCcccccccCeEEEEeccCCCCCCCCcHHHHHHHHhhC
Q psy8996 4 VEKREPAFSISEVHYANNYTTESEVHY-ANNYTTEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFAQNLHAL 81 (95)
Q Consensus 4 ~~~~~~~~ygS~tG~ae~~A~~l~~~~-~~g~~~~v~~l~~~~~~~l~~~~~vi~v~ST~G~Ge~Pdn~~~F~~~L~~~ 81 (95)
.++++.|+|+|+||||+.+|++|++.+ ..|+.+++.+++++. .++..++.+||++||| +|++|+++..|+++|...
T Consensus 20 ~~~kv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~v~~l~~~~-~~l~~~d~vi~g~~Ty-~G~~p~~~~~fl~~L~~~ 96 (191)
T 1bvy_F 20 HNTPLLVLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDSHA-GNLPREGAVLIVTASY-NGHPPDNAKQFVDWLDQA 96 (191)
T ss_dssp -CCCEEEEEECSSSHHHHHHHHHHHHHHTTTCCCEEEEGGGST-TCCCSSSEEEEEECCB-TTBCCTTTHHHHHHHHTC
T ss_pred CCCeEEEEEECCChHHHHHHHHHHHHHHhCCCceEEeeHHHhh-hhhhhCCeEEEEEeec-CCCcCHHHHHHHHHHHhc
Confidence 357789999999999999999998754 578999999999863 4788899999999999 999999999999999764
No 6
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=99.77 E-value=6.4e-19 Score=116.97 Aligned_cols=76 Identities=24% Similarity=0.360 Sum_probs=67.9
Q ss_pred cccccEEEeCCCchHHHHHHHHHHHH-hCCCceEEeeCCCCCcccccccCeEEEEeccCCCCCCCCcHHHHHHHHhh
Q psy8996 5 EKREPAFSISEVHYANNYTTESEVHY-ANNYTTEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFAQNLHA 80 (95)
Q Consensus 5 ~~~~~~~ygS~tG~ae~~A~~l~~~~-~~g~~~~v~~l~~~~~~~l~~~~~vi~v~ST~G~Ge~Pdn~~~F~~~L~~ 80 (95)
.+++.|+|+|+||||+.+|+.|++.+ ..|+.+++.+++++++.++.+++.+||+++|||.|++|++++.|+++|..
T Consensus 9 ~~ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~d~ii~g~pt~g~G~~p~~~~~f~~~l~~ 85 (167)
T 1ykg_A 9 MPGITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFS 85 (167)
T ss_dssp ---CEEEEECSSSHHHHHHHHHHHHHHHHTCCCEEEEGGGCCGGGGGGCSEEEEEEECBGGGBCCGGGHHHHHHHTS
T ss_pred CCeEEEEEECCchHHHHHHHHHHHHHHHCCCceEEeehhhCCHHHhccCCeEEEEEcccCCCcCChhHHHHHHHHHh
Confidence 35789999999999999999998744 56889999999999888999999999999999999999999999999975
No 7
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=99.75 E-value=1.7e-18 Score=112.10 Aligned_cols=76 Identities=9% Similarity=0.052 Sum_probs=69.4
Q ss_pred ccccEEEeCCCchHHHHHHHHHHHH-hCCCceEEeeCCCCCccccc-ccCeEEEEeccCCC--CCCCCcHHHHHHHHhhC
Q psy8996 6 KREPAFSISEVHYANNYTTESEVHY-ANNYTTEVLRMDEYDMSSIE-HEALILVVASTFGN--GDPPENGQEFAQNLHAL 81 (95)
Q Consensus 6 ~~~~~~ygS~tG~ae~~A~~l~~~~-~~g~~~~v~~l~~~~~~~l~-~~~~vi~v~ST~G~--Ge~Pdn~~~F~~~L~~~ 81 (95)
+++.|+|+|+||||+.+|+.|++.+ ..|+++++.+++++++.++. +++.+||+++|||+ |++|++++.|+++|...
T Consensus 2 ~ki~I~y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~~d~ii~g~pty~~~~G~~p~~~~~fl~~l~~~ 81 (148)
T 3f6r_A 2 SKVLIVFGSSTGNTESIAQKLEELIAAGGHEVTLLNAADASAENLADGYDAVLFGCSAWGMEDLEMQDDFLSLFEEFDRI 81 (148)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHTTTCEEEEEETTTBCCTTTTTTCSEEEEEECEECSSSCEECHHHHHHHTTGGGT
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEehhhCCHhHhcccCCEEEEEecccCCCCCCCcHHHHHHHHHhhcc
Confidence 3678999999999999999998744 57899999999999888998 99999999999999 99999999999998753
No 8
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=99.75 E-value=2.2e-18 Score=111.79 Aligned_cols=74 Identities=24% Similarity=0.252 Sum_probs=64.6
Q ss_pred ccccEEEeCCCchHHHHHHHHHHH-HhCCCceEEeeCCCCCcccccccCeEEEEeccCCCCCCCCcHHHHHHHHhhC
Q psy8996 6 KREPAFSISEVHYANNYTTESEVH-YANNYTTEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFAQNLHAL 81 (95)
Q Consensus 6 ~~~~~~ygS~tG~ae~~A~~l~~~-~~~g~~~~v~~l~~~~~~~l~~~~~vi~v~ST~G~Ge~Pdn~~~F~~~L~~~ 81 (95)
+++.|+|+|+||||+.+|++|++. ...|+++++.++. ++.++.+++.+||++||||.|++|++++.|+++|...
T Consensus 2 ~ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~--~~~~l~~~d~vi~g~pt~g~g~~p~~~~~f~~~l~~~ 76 (147)
T 2hna_A 2 ADITLISGSTLGGAEYVAEHLAEKLEEAGFTTETLHGP--LLEDLPASGIWLVISSTHGAGDIPDNLSPFYEALQEQ 76 (147)
T ss_dssp CSEEEECCTTSCCCHHHHHHHHHHHHHTTCCEEEECCT--TSCSSCSEEEEEEECCTTTTCCTTSSCHHHHHHHHHH
T ss_pred CeEEEEEECCchHHHHHHHHHHHHHHHCCCceEEecCC--CHHHcccCCeEEEEECccCCCCCChhHHHHHHHHHhh
Confidence 367899999999999999999874 4578888887765 4667888999999999999999999999999999753
No 9
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=99.74 E-value=6.8e-18 Score=108.05 Aligned_cols=73 Identities=7% Similarity=0.097 Sum_probs=67.1
Q ss_pred ccEEEeCCCchHHHHHHHHHH-HHhCCCceEEeeCCCCCcccccccCeEEEEeccCCCCCCCC-cHHHHHHHHhh
Q psy8996 8 EPAFSISEVHYANNYTTESEV-HYANNYTTEVLRMDEYDMSSIEHEALILVVASTFGNGDPPE-NGQEFAQNLHA 80 (95)
Q Consensus 8 ~~~~ygS~tG~ae~~A~~l~~-~~~~g~~~~v~~l~~~~~~~l~~~~~vi~v~ST~G~Ge~Pd-n~~~F~~~L~~ 80 (95)
+.|+|+|+||||+.+|+.|++ +...|++++++++.++++.++.+++.+||+++||+.|.+|+ +++.|+++|..
T Consensus 1 i~I~Y~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~d~iiig~pty~~g~~p~~~~~~fl~~l~~ 75 (138)
T 5nul_A 1 MKIVYWSGTGNTEKMAELIAKGIIESGKDVNTINVSDVNIDELLNEDILILGCSAMTDEVLEESEFEPFIEEIST 75 (138)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHHTTCCCEEEEGGGCCHHHHTTCSEEEEEECCBTTTBCCTTTHHHHHHHHGG
T ss_pred CEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEEhhhCCHHHHhhCCEEEEEcCccCCCCCChHHHHHHHHHHHh
Confidence 458999999999999999987 44689999999999999899999999999999999999997 99999999875
No 10
>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1
Probab=99.72 E-value=3.7e-18 Score=114.22 Aligned_cols=76 Identities=14% Similarity=0.293 Sum_probs=67.8
Q ss_pred ccccEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCCCCCcccccccCeEEEEeccCCCCCCC--------CcHHHHHHH
Q psy8996 6 KREPAFSISEVHYANNYTTESEVHYANNYTTEVLRMDEYDMSSIEHEALILVVASTFGNGDPP--------ENGQEFAQN 77 (95)
Q Consensus 6 ~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~~~~l~~~~~vi~v~ST~G~Ge~P--------dn~~~F~~~ 77 (95)
+++.|+|+|+||||+.+|++|++.+..++.+++.++++.++.++.+++.+||+++|||+|++| ++++.|+++
T Consensus 1 ~kilI~Y~S~tGnT~~iA~~ia~~l~~~~~v~~~~~~~~~~~~l~~~d~iilg~pt~~~G~~pg~~~~~~~~~~~~fl~~ 80 (179)
T 1yob_A 1 AKIGLFFGSNTGKTRKVAKSIKKRFDDETMSDALNVNRVSAEDFAQYQFLILGTPTLGEGELPGLSSDAENESWEEFLPK 80 (179)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHTTSCTTTBCCCEEGGGCCHHHHHTCSEEEEEEECBTTTBCSSGGGTCSSCCHHHHHHH
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHhCCCCceEEEEhhhCCHHHHhcCCEEEEEeccCCCCcCCcccccccchHHHHHHHH
Confidence 467899999999999999999886654667888999988888899999999999999999999 999999999
Q ss_pred HhhC
Q psy8996 78 LHAL 81 (95)
Q Consensus 78 L~~~ 81 (95)
|...
T Consensus 81 l~~~ 84 (179)
T 1yob_A 81 IEGL 84 (179)
T ss_dssp HTTC
T ss_pred hhhc
Confidence 8653
No 11
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*
Probab=99.71 E-value=5.3e-18 Score=111.75 Aligned_cols=71 Identities=17% Similarity=0.196 Sum_probs=64.6
Q ss_pred ccccEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCCCCCcccccccCeEEEEeccCCCCCCCCcHHHHHHHHh
Q psy8996 6 KREPAFSISEVHYANNYTTESEVHYANNYTTEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFAQNLH 79 (95)
Q Consensus 6 ~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~~~~l~~~~~vi~v~ST~G~Ge~Pdn~~~F~~~L~ 79 (95)
+++.|+|+|+||||+.+|++|++.+ |. +++.+++++++.++.+++.+||+++|||.|++|++++.|+++|.
T Consensus 2 ~k~~I~Y~S~tGnT~~~A~~ia~~l--g~-~~~~~~~~~~~~~l~~~d~ii~g~pt~~~g~~p~~~~~f~~~l~ 72 (164)
T 2bmv_A 2 GKIGIFFGTDSGNAEAIAEKISKAI--GN-AEVVDVAKASKEQFNSFTKVILVAPTAGAGDLQTDWEDFLGTLE 72 (164)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHH--CS-EEEEEGGGCCHHHHTTCSEEEEEEEEETTTEECHHHHHHHTTCC
T ss_pred CeEEEEEECCCchHHHHHHHHHHHc--CC-cEEEecccCCHhHHhhCCEEEEEECCcCCCcCcHHHHHHHHHHh
Confidence 3678999999999999999998866 55 89999999888889999999999999999999999999998865
No 12
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=99.70 E-value=2.1e-17 Score=108.95 Aligned_cols=77 Identities=8% Similarity=0.167 Sum_probs=68.0
Q ss_pred ccccEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCCCCCcccccccCeEEEEeccCCCCCCCCcHHHHHHHHhhCC
Q psy8996 6 KREPAFSISEVHYANNYTTESEVHYANNYTTEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFAQNLHALR 82 (95)
Q Consensus 6 ~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~~~~l~~~~~vi~v~ST~G~Ge~Pdn~~~F~~~L~~~~ 82 (95)
+++.|+|+|+||||+.+|+.|++.+...+.+++.++.++++.++.+++.+||+++||+.|++|++++.|+++|...+
T Consensus 1 ~kilIvY~S~tGnT~~vA~~ia~~l~~~~~v~~~~~~~~~~~~l~~~d~ii~g~pty~~g~~p~~~~~f~~~l~~~~ 77 (169)
T 1czn_A 1 AKIGLFYGTQTGVTQTIAESIQQEFGGESIVDLNDIANADASDLNAYDYLIIGCPTWNVGELQSDWEGIYDDLDSVN 77 (169)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHTSTTTEEEEEGGGCCGGGGGGCSEEEEECCEETTTEECHHHHHHGGGGGGSC
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHhCcccceEEEEhhhCCHhHHhhCCEEEEEecccCCCcCCHHHHHHHHHhhhhc
Confidence 46789999999999999999988664336789999999888899999999999999999999999999999986533
No 13
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=99.69 E-value=5.2e-17 Score=107.04 Aligned_cols=75 Identities=8% Similarity=0.168 Sum_probs=67.4
Q ss_pred ccccEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCCCCCcccccccCeEEEEeccCCCCCCCCcHHHHHHHHhhC
Q psy8996 6 KREPAFSISEVHYANNYTTESEVHYANNYTTEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFAQNLHAL 81 (95)
Q Consensus 6 ~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~~~~l~~~~~vi~v~ST~G~Ge~Pdn~~~F~~~L~~~ 81 (95)
+++.|+|+|+||||+.+|+.|++.+... .+++.+++++++.++.+++.+||+++||+.|++|++++.|+++|...
T Consensus 2 mkilIiY~S~tGnT~~vA~~ia~~l~~~-~v~~~~~~~~~~~~l~~~d~ii~g~p~y~~g~~p~~~~~fl~~l~~~ 76 (169)
T 1obo_A 2 KKIGLFYGTQTGKTESVAEIIRDEFGND-VVTLHDVSQAEVTDLNDYQYLIIGCPTLNIGELQSDWEGLYSELDDV 76 (169)
T ss_dssp CSEEEEECCSSSHHHHHHHHHHHHHCTT-TEEEEETTTCCGGGGGGCSEEEEEEEEETTTEECHHHHHHHTTGGGC
T ss_pred CeEEEEEECCCchHHHHHHHHHHHhCcC-CcEEEEcccCCHHHHhhCCEEEEEEeeCCCCcCCHHHHHHHHHhhhc
Confidence 4678999999999999999999866533 78999999998889999999999999999999999999999988753
No 14
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=99.69 E-value=6.3e-17 Score=104.36 Aligned_cols=75 Identities=11% Similarity=0.081 Sum_probs=67.9
Q ss_pred cccEEEeCCCchHHHHHHHHHHHH-hCCCceEEeeCCCCCcccccc-cCeEEEEeccCCCCC--CCCcHHHHHHHHhhC
Q psy8996 7 REPAFSISEVHYANNYTTESEVHY-ANNYTTEVLRMDEYDMSSIEH-EALILVVASTFGNGD--PPENGQEFAQNLHAL 81 (95)
Q Consensus 7 ~~~~~ygS~tG~ae~~A~~l~~~~-~~g~~~~v~~l~~~~~~~l~~-~~~vi~v~ST~G~Ge--~Pdn~~~F~~~L~~~ 81 (95)
++.|+|+|+||||+.+|+.|++.+ ..|+.+++.++++.++.++.+ ++.+||+++|||.|. +|++++.|+++|...
T Consensus 2 ki~iiy~S~~Gnt~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~l~~~~d~ii~~~p~y~~g~~~~p~~~~~fl~~l~~~ 80 (147)
T 1f4p_A 2 KALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWGDDSIELQDDFIPLFDSLEET 80 (147)
T ss_dssp EEEEEEECSSSHHHHHHHHHHHHHHHHTCEEEEEEGGGCCSTTTTTTCSEEEEEECEECSSSCEECTTTHHHHHTGGGS
T ss_pred eEEEEEECCcCHHHHHHHHHHHHHHhcCCeeEEEehhhCCHHHhcCcCCEEEEEeCCCCCCCcCCChhHHHHHHHHHhc
Confidence 568999999999999999998744 578899999999988888988 999999999999999 999999999998753
No 15
>2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1
Probab=99.68 E-value=7.2e-17 Score=107.32 Aligned_cols=76 Identities=13% Similarity=0.194 Sum_probs=65.2
Q ss_pred cccEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCCCC-CcccccccCeEEEEeccCCCCCC----CCcHHHHH-HHHhh
Q psy8996 7 REPAFSISEVHYANNYTTESEVHYANNYTTEVLRMDEY-DMSSIEHEALILVVASTFGNGDP----PENGQEFA-QNLHA 80 (95)
Q Consensus 7 ~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~-~~~~l~~~~~vi~v~ST~G~Ge~----Pdn~~~F~-~~L~~ 80 (95)
++.|+|+|+||||+.+|++|++.+... .+++.+++++ ++.++.+++.+||+++|||+|++ |++++.|+ ++|..
T Consensus 1 ki~I~Y~S~tGnT~~vA~~ia~~l~~~-~~~~~~~~~~~~~~~l~~~d~ii~g~pt~~~G~~~~~~p~~~~~fl~~~l~~ 79 (173)
T 2fcr_A 1 KIGIFFSTSTGNTTEVADFIGKTLGAK-ADAPIDVDDVTDPQALKDYDLLFLGAPTWNTGADTERSGTSWDEFLYDKLPE 79 (173)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHGGG-BCCCEEGGGCSCGGGGGGCSEEEEEEECCSTTCSSCCSCSTHHHHHHHTGGG
T ss_pred CEEEEEECCCchHHHHHHHHHHHhccC-CcEEEehhhcCChhHHccCCEEEEEEeecCCCCcCccCcHHHHHHHHhhccc
Confidence 367999999999999999998866432 5778888888 78889999999999999999999 99999999 88765
Q ss_pred CCC
Q psy8996 81 LRI 83 (95)
Q Consensus 81 ~~~ 83 (95)
.++
T Consensus 80 ~~l 82 (173)
T 2fcr_A 80 VDM 82 (173)
T ss_dssp CCC
T ss_pred ccc
Confidence 433
No 16
>2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus}
Probab=99.68 E-value=1.3e-17 Score=111.57 Aligned_cols=76 Identities=14% Similarity=0.253 Sum_probs=66.7
Q ss_pred ccccEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCCCCCcccccccCeEEEEeccCCCCCCC--------CcHHHHHHH
Q psy8996 6 KREPAFSISEVHYANNYTTESEVHYANNYTTEVLRMDEYDMSSIEHEALILVVASTFGNGDPP--------ENGQEFAQN 77 (95)
Q Consensus 6 ~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~~~~l~~~~~vi~v~ST~G~Ge~P--------dn~~~F~~~ 77 (95)
+++.|+|+|+||||+.+|++|++.+...+.+++.++++.++.++.+++.+||+++|||.|++| ++++.|+++
T Consensus 2 ~kilIiY~S~tGnT~~iA~~ia~~l~~~~~v~~~~~~~~~~~~l~~~d~ii~g~pty~~G~~pg~~~~~~~~~~~~f~~~ 81 (182)
T 2wc1_A 2 AKIGLFFGSDTGTTRKIAKQIKDMFDDEVMAKPLNVNRADVADFMAYDFLILGTPTLGDGQLPGLSANAASESWEEFLPR 81 (182)
T ss_dssp CSEEEEECCSSSHHHHHHHHHHTTSCTTTBCCCEEGGGCCHHHHHHCSEEEEEEECBTTTBCSSGGGTCSSCCHHHHGGG
T ss_pred cEEEEEEECCCchHHHHHHHHHHHhcccCceEEEEcccCCHHHHhhCCeEEEEEeeCCCCCCCccccccchhHHHHHHHH
Confidence 468899999999999999999875543366888999888888899999999999999999999 999999998
Q ss_pred HhhC
Q psy8996 78 LHAL 81 (95)
Q Consensus 78 L~~~ 81 (95)
|...
T Consensus 82 l~~~ 85 (182)
T 2wc1_A 82 IADQ 85 (182)
T ss_dssp GTTC
T ss_pred hhhc
Confidence 8653
No 17
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=99.68 E-value=4.3e-17 Score=108.70 Aligned_cols=75 Identities=13% Similarity=0.180 Sum_probs=66.3
Q ss_pred cccEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCCCCCcccccccCeEEEEeccCCCCCCCCcHHHHHHHHhhCC
Q psy8996 7 REPAFSISEVHYANNYTTESEVHYANNYTTEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFAQNLHALR 82 (95)
Q Consensus 7 ~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~~~~l~~~~~vi~v~ST~G~Ge~Pdn~~~F~~~L~~~~ 82 (95)
++.|+|+|+||||+.+|+.|++.+... .+++.++.+.++.++.+++.+||+++||+.|++|++++.|+++|...+
T Consensus 2 ki~IvY~S~tGnT~~iA~~Ia~~l~~~-~v~i~~~~~~~~~~l~~~d~ii~g~pt~~~G~~p~~~~~f~~~l~~~~ 76 (175)
T 1ag9_A 2 ITGIFFGSDTGNTENIAKMIQKQLGKD-VADVHDIAKSSKEDLEAYDILLLGIPTWYYGEAQCDWDDFFPTLEEID 76 (175)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHCTT-TEEEEEGGGCCHHHHHTCSEEEEECCEETTTEECHHHHHHHHHHTTCC
T ss_pred EEEEEEECCCchHHHHHHHHHHHhccC-ceEEEEcccCChhHhhhCCEEEEEEeecCCCcChHHHHHHHhhhhhcc
Confidence 578999999999999999999866533 588999988888889999999999999999999999999999987533
No 18
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=99.64 E-value=6.8e-16 Score=97.88 Aligned_cols=73 Identities=15% Similarity=0.218 Sum_probs=66.0
Q ss_pred ccEEEeCCCchHHHHHHHHHHHH-hCCCceEEeeCCCCCcccccccCeEEEEeccCCCCCCCC-cHHHHHHHHhh
Q psy8996 8 EPAFSISEVHYANNYTTESEVHY-ANNYTTEVLRMDEYDMSSIEHEALILVVASTFGNGDPPE-NGQEFAQNLHA 80 (95)
Q Consensus 8 ~~~~ygS~tG~ae~~A~~l~~~~-~~g~~~~v~~l~~~~~~~l~~~~~vi~v~ST~G~Ge~Pd-n~~~F~~~L~~ 80 (95)
+.|+|+|.||||+.+|+.|++.+ ..|+++++.+++++++.++.+++.+||+++||+.|.+|. +++.|++++..
T Consensus 2 i~iiy~S~tGnT~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~~ 76 (137)
T 2fz5_A 2 VEIVYWSGTGNTEAMANEIEAAVKAAGADVESVRFEDTNVDDVASKDVILLGCPAMGSEELEDSVVEPFFTDLAP 76 (137)
T ss_dssp EEEEECCSSSHHHHHHHHHHHHHHHTTCCEEEEETTSCCHHHHHTCSEEEEECCCBTTTBCCHHHHHHHHHHHGG
T ss_pred EEEEEECCCChHHHHHHHHHHHHHhCCCeEEEEEcccCCHHHHhcCCEEEEEccccCCCCCCHHHHHHHHHHhhh
Confidence 46899999999999999998744 578999999999998888999999999999999999998 59999999863
No 19
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=99.55 E-value=3.4e-15 Score=98.67 Aligned_cols=77 Identities=12% Similarity=0.077 Sum_probs=65.5
Q ss_pred cccccccEEEeCCCchHHHHHHHHHH-HHhCCCceEEeeCCCC-Ccccc----cccCeEEEEeccCCCCCCCCcHHHHHH
Q psy8996 3 IVEKREPAFSISEVHYANNYTTESEV-HYANNYTTEVLRMDEY-DMSSI----EHEALILVVASTFGNGDPPENGQEFAQ 76 (95)
Q Consensus 3 ~~~~~~~~~ygS~tG~ae~~A~~l~~-~~~~g~~~~v~~l~~~-~~~~l----~~~~~vi~v~ST~G~Ge~Pdn~~~F~~ 76 (95)
+.++++.|+|+|.||||+.+|+.|++ +...|.+++++++.+. ++.++ .+++.+||+++||+ |++| ...|++
T Consensus 2 ~~~~kv~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~d~ii~Gspty~-g~~p--~~~~l~ 78 (159)
T 3fni_A 2 KAETSIGVFYVSEYGYSDRLAQAIINGITKTGVGVDVVDLGAAVDLQELRELVGRCTGLVIGMSPAA-SAAS--IQGALS 78 (159)
T ss_dssp CCCCEEEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHTEEEEEEECCBTT-SHHH--HHHHHH
T ss_pred CCCCEEEEEEECCChHHHHHHHHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHHhCCEEEEEcCcCC-CCcc--HHHHHH
Confidence 46789999999999999999999987 4468999999999988 76544 46899999999998 8888 388999
Q ss_pred HHhhCC
Q psy8996 77 NLHALR 82 (95)
Q Consensus 77 ~L~~~~ 82 (95)
.|....
T Consensus 79 ~l~~~~ 84 (159)
T 3fni_A 79 TILGSV 84 (159)
T ss_dssp HHHHHC
T ss_pred HHHhhc
Confidence 887644
No 20
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=99.53 E-value=1.1e-14 Score=96.05 Aligned_cols=72 Identities=8% Similarity=0.030 Sum_probs=62.0
Q ss_pred cccEEEeCCCchHHHHHHHHHH-HHhCCCceEEeeCCCCCcccc----cccCeEEEEeccCCCCCCCCcHHHHHHHHhhC
Q psy8996 7 REPAFSISEVHYANNYTTESEV-HYANNYTTEVLRMDEYDMSSI----EHEALILVVASTFGNGDPPENGQEFAQNLHAL 81 (95)
Q Consensus 7 ~~~~~ygS~tG~ae~~A~~l~~-~~~~g~~~~v~~l~~~~~~~l----~~~~~vi~v~ST~G~Ge~Pdn~~~F~~~L~~~ 81 (95)
++.|+|+|.||||+.+|+.|++ +...|+.+++.++.+.++.++ .+++.+||+++||| |++|. +.|++.|...
T Consensus 2 kv~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~Gspty~-g~~p~--~~fl~~l~~~ 78 (161)
T 3hly_A 2 SVLIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMVDLRAVDPQELIEAVSSARGIVLGTPPSQ-PSEAV--ATALSTIFAA 78 (161)
T ss_dssp CEEEEECTTSTTHHHHHHHHHHHHHHTTCCEEEEETTTCCHHHHHHHHHHCSEEEEECCBSS-CCHHH--HHHHHHHHHH
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhCCEEEEEcCCcC-CchhH--HHHHHHHHhh
Confidence 4679999999999999999987 446899999999999887665 47999999999997 88885 8899988754
No 21
>2xod_A NRDI protein, NRDI; flavoprotein, redox protein, ribonucleotide reductase; HET: FMN; 0.96A {Bacillus anthracis} PDB: 2xoe_A* 2x2o_A* 2x2p_A*
Probab=99.46 E-value=6.8e-14 Score=88.09 Aligned_cols=60 Identities=15% Similarity=0.183 Sum_probs=48.3
Q ss_pred cEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCCCCCcccccccCeEEEEeccCCCCCCCCcHHHHHHHHhh
Q psy8996 9 PAFSISEVHYANNYTTESEVHYANNYTTEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFAQNLHA 80 (95)
Q Consensus 9 ~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~~~~l~~~~~vi~v~ST~G~Ge~Pdn~~~F~~~L~~ 80 (95)
.|+|+|+||||+.+|++|+ +. + + ++++ +.+ .++.++|+++|||+|++|++++.|++.+..
T Consensus 2 ~I~Y~S~tGnT~~~A~~ia--~~-~--~---~i~~---~~~-~~~~ii~g~pt~~~g~~p~~~~~fl~~~~~ 61 (119)
T 2xod_A 2 LVAYDSMTGNVKRFIHKLN--MP-A--V---QIGE---DLV-IDEDFILITYTTGFGNVPERVLEFLERNNE 61 (119)
T ss_dssp EEEECCSSSHHHHHHHHHT--SC-E--E---ECCT---TCC-CCSCEEEEECCBTTTBCCHHHHHHHHHHGG
T ss_pred EEEEECCChhHHHHHHHhc--cc-C--C---CcCc---ccc-cCCCEEEEEeecCCCcCCHHHHHHHHHcCC
Confidence 5899999999999999998 22 3 2 2332 334 489999999999999999999999987543
No 22
>1rlj_A NRDI protein; flavoprotein, FMN, thioredoxin, alpha/beta/alpha sandwich, structural genomics, PSI, protein structure initiative; HET: FMN; 2.00A {Bacillus subtilis} SCOP: c.23.5.7
Probab=99.41 E-value=4.1e-14 Score=92.21 Aligned_cols=61 Identities=15% Similarity=0.190 Sum_probs=48.3
Q ss_pred ccccEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCCCCCcccccccCeEEEEeccCCCCCCCCcHHHHHHH
Q psy8996 6 KREPAFSISEVHYANNYTTESEVHYANNYTTEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFAQN 77 (95)
Q Consensus 6 ~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~~~~l~~~~~vi~v~ST~G~Ge~Pdn~~~F~~~ 77 (95)
.++.|+|+|.||||+.+|++|++. . .+++.+ .+..++.+|+++||||+|++|+++.+|++.
T Consensus 9 m~i~I~Y~S~TGNt~~vA~~l~~~----~---~~~i~~----~~~~~~~~ilv~pTyG~G~~P~~v~~Fl~~ 69 (139)
T 1rlj_A 9 AMVQIIFDSKTGNVQRFVNKTGFQ----Q---IRKVDE----MDHVDTPFVLVTYTTNFGQVPASTQSFLEK 69 (139)
T ss_dssp SCCEEEECCSSSHHHHHHTTSCCS----E---EEETTS----CSCCCSCEEEEECCBGGGBCCHHHHHHHHH
T ss_pred CEEEEEEECCChhHHHHHHHhccc----c---ceEecc----ccccCCCEEEEEcCcCCCcCcHHHHHHHHh
Confidence 356799999999999999998531 0 224432 356678899999999999999999999864
No 23
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=99.35 E-value=1.2e-12 Score=87.73 Aligned_cols=74 Identities=8% Similarity=-0.030 Sum_probs=67.2
Q ss_pred ccccEEEeCCCchHHHHHHHHHHHH-h-CCCceEEeeCCCCCcccccccCeEEEEeccCCCCCCCCcHHHHHHHHhh
Q psy8996 6 KREPAFSISEVHYANNYTTESEVHY-A-NNYTTEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFAQNLHA 80 (95)
Q Consensus 6 ~~~~~~ygS~tG~ae~~A~~l~~~~-~-~g~~~~v~~l~~~~~~~l~~~~~vi~v~ST~G~Ge~Pdn~~~F~~~L~~ 80 (95)
+++-++|+|.+|||+.+|+.+++.+ . .|.++++.++.+.+.+++.+++.+||+++|| .|.+|..++.|++++..
T Consensus 5 ~kiliiy~S~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~~~~~l~~aD~ii~gsP~y-~g~~~~~lk~fld~~~~ 80 (188)
T 2ark_A 5 GKVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDEATKEDVLWADGLAVGSPTN-MGLVSWKMKRFFDDVLG 80 (188)
T ss_dssp EEEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTTCCHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHTGG
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHHhhcCCCeEEEEEhhhCCHHHHHhCCEEEEEeCcc-CCcCCHHHHHHHHHHhh
Confidence 4688999999999999999998754 4 6888999999998888899999999999999 89999999999999865
No 24
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=99.24 E-value=2e-11 Score=88.96 Aligned_cols=77 Identities=18% Similarity=0.184 Sum_probs=66.4
Q ss_pred cccccEEEeCCCchHHHHHHHHHHHH-hCCCceEEeeCCCCCccc----ccccCeEEEEeccCCCCCCCCcHHHHHHHHh
Q psy8996 5 EKREPAFSISEVHYANNYTTESEVHY-ANNYTTEVLRMDEYDMSS----IEHEALILVVASTFGNGDPPENGQEFAQNLH 79 (95)
Q Consensus 5 ~~~~~~~ygS~tG~ae~~A~~l~~~~-~~g~~~~v~~l~~~~~~~----l~~~~~vi~v~ST~G~Ge~Pdn~~~F~~~L~ 79 (95)
++++-++|+|.||||+.+|+.+++.+ ..|+.+++.++.+.+..+ +.+++.+||+++|||.|.+| .++.|++++.
T Consensus 252 ~~kv~i~y~S~~Gnt~~lA~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~gsp~~~~~~~~-~~~~~l~~l~ 330 (402)
T 1e5d_A 252 TNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKACHHSQIMSEISDAGAVIVGSPTHNNGILP-YVAGTLQYIK 330 (402)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHHHTCSEEEEECCCBTTBCCH-HHHHHHHHHH
T ss_pred CCcEEEEEECCChhHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCEEEEECCccCCCchH-HHHHHHHHhh
Confidence 67899999999999999999998744 578889999999887665 47899999999999988877 6999999987
Q ss_pred hCC
Q psy8996 80 ALR 82 (95)
Q Consensus 80 ~~~ 82 (95)
...
T Consensus 331 ~~~ 333 (402)
T 1e5d_A 331 GLR 333 (402)
T ss_dssp HTC
T ss_pred hcc
Confidence 643
No 25
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=99.18 E-value=4e-11 Score=87.27 Aligned_cols=75 Identities=11% Similarity=0.054 Sum_probs=64.4
Q ss_pred cccccEEEeCCCchHHHHHHHHHHHH-hCCCceEEeeCCCCCcccc----cccCeEEEEeccCCCCCCCCcHHHHHHHHh
Q psy8996 5 EKREPAFSISEVHYANNYTTESEVHY-ANNYTTEVLRMDEYDMSSI----EHEALILVVASTFGNGDPPENGQEFAQNLH 79 (95)
Q Consensus 5 ~~~~~~~ygS~tG~ae~~A~~l~~~~-~~g~~~~v~~l~~~~~~~l----~~~~~vi~v~ST~G~Ge~Pdn~~~F~~~L~ 79 (95)
++++.++|+|+||||+.+|+.+++.+ ..|+.+++.++.+.+..++ ..++.+||+++||+.|.+| .++.|+++|.
T Consensus 251 ~~~i~i~y~S~~GnT~~lA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~g~p~y~~~~~~-~~~~~l~~l~ 329 (398)
T 1ycg_A 251 KAKAVIAYDTMWLSTEKMAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEILDARAVLVGSPTINNDILP-VVSPLLDDLV 329 (398)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGSCHHHHHHHHHHCSEEEEECCCBTTBCCG-GGHHHHHHHH
T ss_pred cCeEEEEEECCccHHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHCCEEEEECCccCccchH-HHHHHHHHHh
Confidence 46789999999999999999998754 5788999999988776554 5889999999999988887 4999999987
Q ss_pred h
Q psy8996 80 A 80 (95)
Q Consensus 80 ~ 80 (95)
.
T Consensus 330 ~ 330 (398)
T 1ycg_A 330 G 330 (398)
T ss_dssp H
T ss_pred c
Confidence 5
No 26
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=99.15 E-value=5.1e-11 Score=87.46 Aligned_cols=75 Identities=12% Similarity=0.052 Sum_probs=64.4
Q ss_pred cccccEEEeCCCchHHHHHHHHHHHH-hCCCceEEeeCCCCCcc----cccccCeEEEEeccCCCCCCCCcHHHHHHHHh
Q psy8996 5 EKREPAFSISEVHYANNYTTESEVHY-ANNYTTEVLRMDEYDMS----SIEHEALILVVASTFGNGDPPENGQEFAQNLH 79 (95)
Q Consensus 5 ~~~~~~~ygS~tG~ae~~A~~l~~~~-~~g~~~~v~~l~~~~~~----~l~~~~~vi~v~ST~G~Ge~Pdn~~~F~~~L~ 79 (95)
++++.++|+|.||||+.+|+.+++.+ ..|+++++.++.+.++. ++..++.+||+++||+.|.+| .++.|++++.
T Consensus 256 ~~kv~iiy~S~~GnT~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~l~~~D~iiigsP~y~~~~~~-~~k~fld~l~ 334 (414)
T 2q9u_A 256 QKKVTVVLDSMYGTTHRMALALLDGARSTGCETVLLEMTSSDITKVALHTYDSGAVAFASPTLNNTMMP-SVAAALNYVR 334 (414)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGCCHHHHHHHHHTCSEEEEECCCBTTBCCH-HHHHHHHHHH
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEEcCcCCHHHHHHHHHhCCEEEEEcCccCcCchH-HHHHHHHHHH
Confidence 46889999999999999999998754 57889999999988765 678899999999999766554 5999999987
Q ss_pred h
Q psy8996 80 A 80 (95)
Q Consensus 80 ~ 80 (95)
.
T Consensus 335 ~ 335 (414)
T 2q9u_A 335 G 335 (414)
T ss_dssp H
T ss_pred h
Confidence 5
No 27
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=99.15 E-value=7.4e-11 Score=78.75 Aligned_cols=74 Identities=8% Similarity=0.002 Sum_probs=62.9
Q ss_pred ccccEEEeCCCchHHHHHHHHHHHH-hCCCceEEeeCCCC-------------------CcccccccCeEEEEeccCCCC
Q psy8996 6 KREPAFSISEVHYANNYTTESEVHY-ANNYTTEVLRMDEY-------------------DMSSIEHEALILVVASTFGNG 65 (95)
Q Consensus 6 ~~~~~~ygS~tG~ae~~A~~l~~~~-~~g~~~~v~~l~~~-------------------~~~~l~~~~~vi~v~ST~G~G 65 (95)
+++-++|+|.+|||+.+|+.+++.+ ..|.+++++++.+. ..+++..++.+||++++|. |
T Consensus 6 ~kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~-~ 84 (200)
T 2a5l_A 6 PYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLALGSPTRF-G 84 (200)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHHTCSEEEEEEECBT-T
T ss_pred ceEEEEEeCCCChHHHHHHHHHHHHhhCCCEEEEEEhhhccchhhhhccccccccCchhhHHHHHHCCEEEEEcChhc-c
Confidence 4689999999999999999998744 57889999998872 2455778999999999995 7
Q ss_pred CCCCcHHHHHHHHhh
Q psy8996 66 DPPENGQEFAQNLHA 80 (95)
Q Consensus 66 e~Pdn~~~F~~~L~~ 80 (95)
.+|...+.|++++..
T Consensus 85 ~~~~~lk~~ld~~~~ 99 (200)
T 2a5l_A 85 NMASPLKYFLDGTSS 99 (200)
T ss_dssp BCCHHHHHHHHTCHH
T ss_pred CccHHHHHHHHHHHH
Confidence 899999999998754
No 28
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=99.13 E-value=6.8e-11 Score=86.22 Aligned_cols=77 Identities=16% Similarity=0.094 Sum_probs=65.2
Q ss_pred cccccEEEeCCCchHHHHHHHHHHHHh-CCCceEEeeCCCCCcc----cccccCeEEEEeccCCCCCCCCcHHHHHHHHh
Q psy8996 5 EKREPAFSISEVHYANNYTTESEVHYA-NNYTTEVLRMDEYDMS----SIEHEALILVVASTFGNGDPPENGQEFAQNLH 79 (95)
Q Consensus 5 ~~~~~~~ygS~tG~ae~~A~~l~~~~~-~g~~~~v~~l~~~~~~----~l~~~~~vi~v~ST~G~Ge~Pdn~~~F~~~L~ 79 (95)
++++-++|+|.+|||+.+|+.+++.+. .|+++++.++.+.++. ++..++.+||+++||+.+ +|..++.|++++.
T Consensus 256 ~~k~~i~~~S~~gnT~~la~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~l~~~d~iiigsP~y~~~-~~~~~k~~ld~l~ 334 (404)
T 2ohh_A 256 DERVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDILESGAIALGAPTIYDE-PYPSVGDLLMYLR 334 (404)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHTTTCEEEEEETTTSCHHHHHHHHHTCSEEEEECCEETTE-ECTHHHHHHHHHH
T ss_pred CCcEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCEEEEECcccccc-chHHHHHHHHHhh
Confidence 467889999999999999999988554 7889999999988765 577899999999999755 5556999999987
Q ss_pred hCC
Q psy8996 80 ALR 82 (95)
Q Consensus 80 ~~~ 82 (95)
...
T Consensus 335 ~~~ 337 (404)
T 2ohh_A 335 GLK 337 (404)
T ss_dssp HHC
T ss_pred hcc
Confidence 543
No 29
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=99.11 E-value=2.5e-10 Score=85.33 Aligned_cols=79 Identities=9% Similarity=0.043 Sum_probs=62.5
Q ss_pred ccccccEEEeCCCchHHHHHHHHHH-HHhCCCceEEeeCCCCC---c----ccccccCeEEEEeccCCCCCCCCcHHHHH
Q psy8996 4 VEKREPAFSISEVHYANNYTTESEV-HYANNYTTEVLRMDEYD---M----SSIEHEALILVVASTFGNGDPPENGQEFA 75 (95)
Q Consensus 4 ~~~~~~~~ygS~tG~ae~~A~~l~~-~~~~g~~~~v~~l~~~~---~----~~l~~~~~vi~v~ST~G~Ge~Pdn~~~F~ 75 (95)
.++++.|+|+|.+|||+.+|+.|++ +.+.|..+.+..+.+.+ + .++.+++.+||+++||+ |+++..+..|+
T Consensus 264 ~~~~v~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~~s~i~~~i~~~~~ivlGspT~~-~~~~p~~~~~l 342 (410)
T 4dik_A 264 KKGKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIFGVSTYE-AEIHPLMRFTL 342 (410)
T ss_dssp CTTEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEEEECCTT-SSSCHHHHHHH
T ss_pred cccceeeEEecccChHHHHHHHHHHHHHhcCCceEEEEeccCCCCCHHHHHHHHHhCCeEEEEeCCcC-CcCCHHHHHHH
Confidence 4668999999999999999999987 55689887666554443 2 24568999999999997 66777899999
Q ss_pred HHHhhCCC
Q psy8996 76 QNLHALRI 83 (95)
Q Consensus 76 ~~L~~~~~ 83 (95)
..|.....
T Consensus 343 ~~l~~~~~ 350 (410)
T 4dik_A 343 LEIIDKAN 350 (410)
T ss_dssp HHHHHHCC
T ss_pred HHHHhccc
Confidence 88876543
No 30
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=99.09 E-value=1.5e-10 Score=77.16 Aligned_cols=73 Identities=11% Similarity=0.012 Sum_probs=62.8
Q ss_pred cccEEEeCCCchHHHHHHHHHHHH-h-CCCceEEeeCCCC-------------------CcccccccCeEEEEeccCCCC
Q psy8996 7 REPAFSISEVHYANNYTTESEVHY-A-NNYTTEVLRMDEY-------------------DMSSIEHEALILVVASTFGNG 65 (95)
Q Consensus 7 ~~~~~ygS~tG~ae~~A~~l~~~~-~-~g~~~~v~~l~~~-------------------~~~~l~~~~~vi~v~ST~G~G 65 (95)
++-++|+|.+|||+.+|+.+++.+ . .|.+++++++.+. +.+++..++.+||+++|| .|
T Consensus 3 kilii~~S~~g~t~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y-~~ 81 (198)
T 3b6i_A 3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTR-FG 81 (198)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHHHHTSTTCEEEEEECCCCSCHHHHHHTTCCCCCSCBCCGGGGGGCSEEEEEEEEE-TT
T ss_pred eEEEEEeCCCcHHHHHHHHHHHHHhhcCCCEEEEEEccccCchhhhhhcccccccCchhhHHHHHHCCEEEEEeChh-cC
Confidence 678999999999999999998755 4 6889999998863 245678899999999999 79
Q ss_pred CCCCcHHHHHHHHhh
Q psy8996 66 DPPENGQEFAQNLHA 80 (95)
Q Consensus 66 e~Pdn~~~F~~~L~~ 80 (95)
.+|...+.|++++..
T Consensus 82 ~~~~~lk~~ld~~~~ 96 (198)
T 3b6i_A 82 NMSGQMRTFLDQTGG 96 (198)
T ss_dssp EECHHHHHHHTTCHH
T ss_pred CchHHHHHHHHHhhh
Confidence 999999999988753
No 31
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=99.00 E-value=4.3e-10 Score=75.18 Aligned_cols=72 Identities=8% Similarity=-0.010 Sum_probs=60.9
Q ss_pred ccccEEEeCCCchHHHHHHHHHHHH-hCCCceEEeeCCCC--------------------CcccccccCeEEEEeccCCC
Q psy8996 6 KREPAFSISEVHYANNYTTESEVHY-ANNYTTEVLRMDEY--------------------DMSSIEHEALILVVASTFGN 64 (95)
Q Consensus 6 ~~~~~~ygS~tG~ae~~A~~l~~~~-~~g~~~~v~~l~~~--------------------~~~~l~~~~~vi~v~ST~G~ 64 (95)
.++-++|+| +|||+.+|+.+++.+ ..|.+++++++.+. +.+++..++.+||++++|.
T Consensus 5 mkilii~~S-~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~aD~ii~gsP~y~- 82 (199)
T 2zki_A 5 PNILVLFYG-YGSIVELAKEIGKGAEEAGAEVKIRRVRETLPPEFQSRIPFDKVKDIPEVTLDDMRWADGFAIGSPTRY- 82 (199)
T ss_dssp CEEEEEECC-SSHHHHHHHHHHHHHHHHSCEEEEEECCCCSCGGGGTTCCGGGSTTSCBCCHHHHHHCSEEEEEEECBT-
T ss_pred cEEEEEEeC-ccHHHHHHHHHHHHHHhCCCEEEEEehhHhCChhhhhccCCCcccccccccHHHHHhCCEEEEECCccc-
Confidence 478999999 999999999998744 47888999988875 1345668899999999995
Q ss_pred CCCCCcHHHHHHHHh
Q psy8996 65 GDPPENGQEFAQNLH 79 (95)
Q Consensus 65 Ge~Pdn~~~F~~~L~ 79 (95)
|.+|...+.|++++.
T Consensus 83 ~~~~~~lk~~ld~~~ 97 (199)
T 2zki_A 83 GNMAGGLKTFLDTTA 97 (199)
T ss_dssp TBCCHHHHHHHHTTH
T ss_pred cCccHHHHHHHHHhh
Confidence 889999999999874
No 32
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=99.00 E-value=1.2e-09 Score=72.63 Aligned_cols=69 Identities=7% Similarity=0.051 Sum_probs=53.1
Q ss_pred cccccEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCC---CCC-----------------------------ccccccc
Q psy8996 5 EKREPAFSISEVHYANNYTTESEVHYANNYTTEVLRMD---EYD-----------------------------MSSIEHE 52 (95)
Q Consensus 5 ~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~---~~~-----------------------------~~~l~~~ 52 (95)
..++-|+|.|.||||+.+|+.|++.+. .+++++. .|+ ..++.++
T Consensus 13 ~mkilIvY~S~tGnT~~vA~~Ia~~l~----~d~~~I~~~~~y~~~~~~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~~y 88 (171)
T 4ici_A 13 NSKILVAYFSATGTTARAAEKLGAAVG----GDLYPIAPAQPYTSADLDWNNKRSRSSVEMNDPKMRPAIKSKKENIGTY 88 (171)
T ss_dssp CCCEEEEECCSSSHHHHHHHHHHHHHT----CEEEECCBSSCCCTGGGCTTCTTSHHHHHHHCTTCCCCBSCCCTTGGGC
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHhC----CCeEEEeeCCCCCccccchhhHhHHHHHHHhcccCCcccccccccHhHC
Confidence 346789999999999999999998663 2333333 221 2457789
Q ss_pred CeEEEEeccCCCCCCCCcHHHHHHHH
Q psy8996 53 ALILVVASTFGNGDPPENGQEFAQNL 78 (95)
Q Consensus 53 ~~vi~v~ST~G~Ge~Pdn~~~F~~~L 78 (95)
+.+||++++|+ |.+|..++.|++.+
T Consensus 89 D~iilg~Pvy~-g~~~~~~~~fl~~~ 113 (171)
T 4ici_A 89 DVVFIGYPIWW-DLAPRIINTFIEGH 113 (171)
T ss_dssp SEEEEEEECBT-TBCCHHHHHHHHHS
T ss_pred CEEEEeccccc-CCchHHHHHHHHHc
Confidence 99999999996 88888888888765
No 33
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=98.98 E-value=6e-10 Score=74.89 Aligned_cols=70 Identities=11% Similarity=0.114 Sum_probs=55.7
Q ss_pred cccccEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCCC---CC---cccccccCeEEEEeccCCCCCCCCcHHHHHHHH
Q psy8996 5 EKREPAFSISEVHYANNYTTESEVHYANNYTTEVLRMDE---YD---MSSIEHEALILVVASTFGNGDPPENGQEFAQNL 78 (95)
Q Consensus 5 ~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~---~~---~~~l~~~~~vi~v~ST~G~Ge~Pdn~~~F~~~L 78 (95)
.+++.|+|+|.+|||+.+|+.|++.+.. ..+++.+ ++ .+++..++.+||+++||. |.+|..++.|++++
T Consensus 6 ~~kiliiy~S~~GnT~~lA~~ia~~l~~----~~~~v~~~~~~~~~~~~~l~~~D~ii~gsP~y~-g~~~~~~k~fld~~ 80 (193)
T 3d7n_A 6 SSNTVVVYHSGYGHTHRMAEAVAEGAEA----TLHAIDAEGNLSEDGWAALDAADAIIFGTPTYM-GGPSWQFKKFADAS 80 (193)
T ss_dssp CCCEEEEECCSSSHHHHHHHHHHHHHTC----EEEECCTTSCCCHHHHHHHHHCSEEEEEEEEET-TEECHHHHHHHHHT
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHhhh----cceEeeecCCCCHhHHHHHHHCCEEEEEeCccC-CCccHHHHHHHHHh
Confidence 3578999999999999999999886542 2333333 32 256778999999999995 88999999999988
Q ss_pred h
Q psy8996 79 H 79 (95)
Q Consensus 79 ~ 79 (95)
.
T Consensus 81 ~ 81 (193)
T 3d7n_A 81 S 81 (193)
T ss_dssp H
T ss_pred h
Confidence 5
No 34
>3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm}
Probab=98.98 E-value=1.1e-09 Score=71.26 Aligned_cols=73 Identities=15% Similarity=0.179 Sum_probs=54.0
Q ss_pred ccccEEEeCCCchHHHHHHHHHHHH-hCC-CceEEee--CC---------------------C--CCcccccccCeEEEE
Q psy8996 6 KREPAFSISEVHYANNYTTESEVHY-ANN-YTTEVLR--MD---------------------E--YDMSSIEHEALILVV 58 (95)
Q Consensus 6 ~~~~~~ygS~tG~ae~~A~~l~~~~-~~g-~~~~v~~--l~---------------------~--~~~~~l~~~~~vi~v 58 (95)
+++.|+|.|.||||+.+|+.|++.+ ..+ +.+++.. .+ + ....++.+++.+||+
T Consensus 4 ~kilIvY~S~tGnT~~iA~~Ia~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~~~d~iilG 83 (151)
T 3edo_A 4 KKTLILYYSWSGETKKMAEKINSEIKDSELKEVKVSEGTFDADXYKTSDIALDQIQGNKDFPEIQLDNIDYNNYDLILIG 83 (151)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHSTTCEEEECBCCTTSSCSSHHHHHHHHHHHHTTSSCCCCCBCCCCCGGGCSEEEEE
T ss_pred CcEEEEEECCCCcHHHHHHHHHHhccCCCEEEEEcCCCCCCchhhhhhHHHHHHHhcccCCcccchhhhCHhhCCEEEEE
Confidence 5789999999999999999997644 333 2222210 00 1 123467789999999
Q ss_pred eccCCCCCCCCcHHHHHHHHh
Q psy8996 59 ASTFGNGDPPENGQEFAQNLH 79 (95)
Q Consensus 59 ~ST~G~Ge~Pdn~~~F~~~L~ 79 (95)
++||. |.+|..++.|++.+.
T Consensus 84 ~P~~~-g~~~~~~~~fl~~~~ 103 (151)
T 3edo_A 84 SPVWS-GYPATPIKTLLDQMK 103 (151)
T ss_dssp EEEET-TEECTHHHHHHHHTT
T ss_pred cceec-ccccHHHHHHHHhch
Confidence 99995 999999999998874
No 35
>3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343}
Probab=98.96 E-value=1.1e-09 Score=72.04 Aligned_cols=69 Identities=9% Similarity=0.058 Sum_probs=52.1
Q ss_pred cccccEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCC---CC-----------------------------Cccccccc
Q psy8996 5 EKREPAFSISEVHYANNYTTESEVHYANNYTTEVLRMD---EY-----------------------------DMSSIEHE 52 (95)
Q Consensus 5 ~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~---~~-----------------------------~~~~l~~~ 52 (95)
.+++-|+|.|.||||+.+|+.|++.+.. ++.++. .| ...++.++
T Consensus 4 ~~kilIvY~S~tG~T~~vA~~Ia~~l~~----~~~~i~~~~~y~~~~l~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~~y 79 (162)
T 3klb_A 4 DRKILVAYFSCSGVTKAVAEKLAAITGA----DLYEIKPEVPYTEADLDWNDKKSRSSVEMRDALSRPAISGTLFHPEKY 79 (162)
T ss_dssp GSCEEEEECCSSSHHHHHHHHHHHHHTC----EEEECCBSSCCCTGGGCTTCTTSHHHHHHTCTTCCCCBSCCCSCGGGC
T ss_pred CCCEEEEEECCCchHHHHHHHHHHHhCC----CeEEEEeCCcCCccccchhhHHHHHHHHHhccccCccccccccChhhC
Confidence 3678999999999999999999886532 222221 11 12457789
Q ss_pred CeEEEEeccCCCCCCCCcHHHHHHHH
Q psy8996 53 ALILVVASTFGNGDPPENGQEFAQNL 78 (95)
Q Consensus 53 ~~vi~v~ST~G~Ge~Pdn~~~F~~~L 78 (95)
+.+||+++||+ |.+|..++.|++.+
T Consensus 80 d~iilG~P~~~-g~~~~~~~~fl~~~ 104 (162)
T 3klb_A 80 EVLFVGFPVWW-YIAPTIINTFLESY 104 (162)
T ss_dssp SEEEEEEECBT-TBCCHHHHHHHHTS
T ss_pred CEEEEEccccc-CCCCHHHHHHHHhc
Confidence 99999999995 88998888887654
No 36
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=98.91 E-value=1.3e-09 Score=73.58 Aligned_cols=73 Identities=16% Similarity=0.129 Sum_probs=62.0
Q ss_pred ccccEEEeCCCchHHHHHHHHHHHH-hCCCceEEeeCCCC--------------------C-----cccccccCeEEEEe
Q psy8996 6 KREPAFSISEVHYANNYTTESEVHY-ANNYTTEVLRMDEY--------------------D-----MSSIEHEALILVVA 59 (95)
Q Consensus 6 ~~~~~~ygS~tG~ae~~A~~l~~~~-~~g~~~~v~~l~~~--------------------~-----~~~l~~~~~vi~v~ 59 (95)
+++-++|+|.+|||+.+|+.+++.+ +.|.+++++++.+. + .+++..++.+||++
T Consensus 7 mkilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ii~gs 86 (211)
T 1ydg_A 7 VKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSS 86 (211)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCSEEEEEE
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEeccccccchhhhcccccccccccccchhHHHHHHHHHCCEEEEEc
Confidence 5789999999999999999998744 57889999998774 2 23466889999999
Q ss_pred ccCCCCCCCCcHHHHHHHHh
Q psy8996 60 STFGNGDPPENGQEFAQNLH 79 (95)
Q Consensus 60 ST~G~Ge~Pdn~~~F~~~L~ 79 (95)
++|. |.+|...+.|++++.
T Consensus 87 P~y~-~~~~~~lk~~ld~~~ 105 (211)
T 1ydg_A 87 PTRF-GGATSQMRAFIDTLG 105 (211)
T ss_dssp EEET-TEECHHHHHHHHTTH
T ss_pred Cccc-cCccHHHHHHHHHhc
Confidence 9995 889999999999874
No 37
>3n3a_C Protein NRDI; ribonucleotide reductase, four-helix bundle, dimanganese CLU flavoprotein, oxidoreductase; HET: FMN; 1.99A {Escherichia coli} PDB: 3n39_C* 3n3b_C*
Probab=98.91 E-value=2e-09 Score=71.22 Aligned_cols=63 Identities=13% Similarity=0.289 Sum_probs=46.3
Q ss_pred cEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCCCCCcccccccCeEEEEeccCC----CCCCCCcHHHHHHHHh
Q psy8996 9 PAFSISEVHYANNYTTESEVHYANNYTTEVLRMDEYDMSSIEHEALILVVASTFG----NGDPPENGQEFAQNLH 79 (95)
Q Consensus 9 ~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~~~~l~~~~~vi~v~ST~G----~Ge~Pdn~~~F~~~L~ 79 (95)
-|+|.|.|||+++++++|.. ...-+++.+ ...+..++.+|++++||| .|+.|+.+.+|++.+.
T Consensus 24 ivYfsS~TGNT~rFv~kL~~------~~~~I~~~~--~~~~~~~ep~vlv~PTYg~g~~~G~vP~~v~dFl~~~~ 90 (153)
T 3n3a_C 24 LVYFSSSSENTQRFIERLGL------PAVRIPLNE--RERIQVDEPYILIVPSYGGGGTAGAVPRQVIRFLNDEH 90 (153)
T ss_dssp EEECCCTTCHHHHHHHHHCS------CCEECCSST--TCCCCCCSCEEEEEECCTTSSSSSSSCHHHHHHHTSHH
T ss_pred EEEEECCCcCHHHHHHHhCC------ccccccccc--CcccccCCCEEEEEeccCCCCcCCcCcHHHHHHHhhhc
Confidence 36778899999999999842 222223332 234556789999999999 5999999999997553
No 38
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=98.71 E-value=1.2e-08 Score=68.65 Aligned_cols=73 Identities=11% Similarity=0.035 Sum_probs=61.3
Q ss_pred ccccEEEeCC--CchHHHHHHHHHHH-H-hCCCceEEeeCCCCCc-----------------ccccccCeEEEEeccCCC
Q psy8996 6 KREPAFSISE--VHYANNYTTESEVH-Y-ANNYTTEVLRMDEYDM-----------------SSIEHEALILVVASTFGN 64 (95)
Q Consensus 6 ~~~~~~ygS~--tG~ae~~A~~l~~~-~-~~g~~~~v~~l~~~~~-----------------~~l~~~~~vi~v~ST~G~ 64 (95)
.++.++|||. +||++.+|+.+++. + ..|.+++++++.+++. +.+..++.+||++++| .
T Consensus 3 mkilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP~y-~ 81 (197)
T 2vzf_A 3 YSIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPIY-K 81 (197)
T ss_dssp EEEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEECB-T
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEeCcc-C
Confidence 3678999997 89999999999765 5 5788899999988753 3466889999999999 5
Q ss_pred CCCCCcHHHHHHHHh
Q psy8996 65 GDPPENGQEFAQNLH 79 (95)
Q Consensus 65 Ge~Pdn~~~F~~~L~ 79 (95)
|.+|...+.|++++.
T Consensus 82 ~~~p~~lK~~ld~l~ 96 (197)
T 2vzf_A 82 ASYTGLLKAFLDILP 96 (197)
T ss_dssp TBCCHHHHHHHTTSC
T ss_pred CCCCHHHHHHHHhcc
Confidence 779999999999875
No 39
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=98.40 E-value=1.4e-07 Score=62.81 Aligned_cols=74 Identities=11% Similarity=0.011 Sum_probs=60.4
Q ss_pred ccccEEEeCCC--chHHHHHHHHHHHHhCCCceEEeeCCCCCc------------------ccccccCeEEEEeccCCCC
Q psy8996 6 KREPAFSISEV--HYANNYTTESEVHYANNYTTEVLRMDEYDM------------------SSIEHEALILVVASTFGNG 65 (95)
Q Consensus 6 ~~~~~~ygS~t--G~ae~~A~~l~~~~~~g~~~~v~~l~~~~~------------------~~l~~~~~vi~v~ST~G~G 65 (95)
.++.++|||.. ||++.+|+.+.+.++.|.+++++++.+++. +.+..++.+||++.+| .|
T Consensus 7 Mkilii~gS~r~~g~t~~la~~i~~~l~~g~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~sP~y-~~ 85 (193)
T 1rtt_A 7 IKVLGISGSLRSGSYNSAALQEAIGLVPPGMSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLFATPEY-NY 85 (193)
T ss_dssp CEEEEEESCCSTTCHHHHHHHHHHTTCCTTCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECCEE-TT
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHhccCCCeEEEEeHHHCCCCCccccccCCCHHHHHHHHHHHhCCEEEEEcccc-cc
Confidence 36899999974 999999999987554678889998887431 2456789999999999 56
Q ss_pred CCCCcHHHHHHHHhh
Q psy8996 66 DPPENGQEFAQNLHA 80 (95)
Q Consensus 66 e~Pdn~~~F~~~L~~ 80 (95)
.+|...+.|++++..
T Consensus 86 ~~p~~lK~~iD~~~~ 100 (193)
T 1rtt_A 86 SMAGVLKNAIDWASR 100 (193)
T ss_dssp EECHHHHHHHHHHTC
T ss_pred CcCHHHHHHHHHhcc
Confidence 689999999999865
No 40
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=98.34 E-value=1e-06 Score=58.33 Aligned_cols=74 Identities=9% Similarity=0.132 Sum_probs=59.8
Q ss_pred ccccEEEeCCC---chHHHHHHHHHHHH-hCC--CceEEeeCCCCCc---------------------------------
Q psy8996 6 KREPAFSISEV---HYANNYTTESEVHY-ANN--YTTEVLRMDEYDM--------------------------------- 46 (95)
Q Consensus 6 ~~~~~~ygS~t---G~ae~~A~~l~~~~-~~g--~~~~v~~l~~~~~--------------------------------- 46 (95)
+++.++|||.. ||++.+|+.+.+.+ ++| .+++++++.+.+.
T Consensus 2 mkilii~~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 81 (201)
T 1t5b_A 2 SKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLAANPVPVLDGELVGAMRPGDAPLTPRQQDALALSDELI 81 (201)
T ss_dssp CEEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEETTTSCCCCCCHHHHHHTC--CCCCCHHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEeccCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHHH
Confidence 36789999987 99999999997744 444 7899999987532
Q ss_pred ccccccCeEEEEeccCCCCCCCCcHHHHHHHHhh
Q psy8996 47 SSIEHEALILVVASTFGNGDPPENGQEFAQNLHA 80 (95)
Q Consensus 47 ~~l~~~~~vi~v~ST~G~Ge~Pdn~~~F~~~L~~ 80 (95)
+.+..+|.+||++.+| .|.+|...+.|++++..
T Consensus 82 ~~l~~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~ 114 (201)
T 1t5b_A 82 AELKAHDVIVIAAPMY-NFNIPTQLKNYFDLIAR 114 (201)
T ss_dssp HHHHHCSEEEEECCCB-TTBCCHHHHHHHHHHCC
T ss_pred HHHHhCCEEEEEeCcc-cCcCCHHHHHHHHHhee
Confidence 2456789999999999 56789999999999863
No 41
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=98.33 E-value=8.4e-07 Score=58.24 Aligned_cols=69 Identities=7% Similarity=0.114 Sum_probs=54.7
Q ss_pred cccEEEeCCC--chHHHHHHHHHHHHhCCCceEEeeCCCCCc-------------------ccccccCeEEEEeccCCCC
Q psy8996 7 REPAFSISEV--HYANNYTTESEVHYANNYTTEVLRMDEYDM-------------------SSIEHEALILVVASTFGNG 65 (95)
Q Consensus 7 ~~~~~ygS~t--G~ae~~A~~l~~~~~~g~~~~v~~l~~~~~-------------------~~l~~~~~vi~v~ST~G~G 65 (95)
++.++|||.. |+++.+|+.+++.+. .+++++.+++. +.+..++.+||++.+| .|
T Consensus 2 kilii~gS~~~~g~t~~la~~i~~~l~----~~~i~l~~~~lp~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~tP~y-~~ 76 (174)
T 3gfs_A 2 NMLVINGTPRKHGRTRIAASYIAALYH----TDLIDLSEFVLPVFNGEAEQSELLKVQELKQRVTKADAIVLLSPEY-HS 76 (174)
T ss_dssp -CEEEECCCCTTCHHHHHHHHHHHHTT----CEEEETTTSCCCCCCCCHHHHTCHHHHHHHHHHHHCSSEEEEEECS-SS
T ss_pred EEEEEECCCCCCCcHHHHHHHHHHhCc----ceEEeeecCCCCCCCChhhccCcHHHHHHHHHHHHCCEEEEEcCCc-CC
Confidence 5789999988 999999999987543 25566655443 1456889999999999 89
Q ss_pred CCCCcHHHHHHHHhh
Q psy8996 66 DPPENGQEFAQNLHA 80 (95)
Q Consensus 66 e~Pdn~~~F~~~L~~ 80 (95)
.+|...+.|++|+..
T Consensus 77 ~~p~~lk~~lD~l~~ 91 (174)
T 3gfs_A 77 GMSGALKNALDFLSS 91 (174)
T ss_dssp SCCHHHHHHHHTCCH
T ss_pred CCCHHHHHHHHHhCH
Confidence 999999999998753
No 42
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=98.26 E-value=4.9e-07 Score=59.95 Aligned_cols=72 Identities=10% Similarity=0.095 Sum_probs=57.0
Q ss_pred cccEEEeCCC--chHHHHHHHHHHHHh-C------CCceEEeeCCCCCc-----------------------------cc
Q psy8996 7 REPAFSISEV--HYANNYTTESEVHYA-N------NYTTEVLRMDEYDM-----------------------------SS 48 (95)
Q Consensus 7 ~~~~~ygS~t--G~ae~~A~~l~~~~~-~------g~~~~v~~l~~~~~-----------------------------~~ 48 (95)
++.++|||.. |+++.+|+.+.+.++ . |.+++++++.+.+. +.
T Consensus 2 kilii~gS~r~~~~t~~la~~~~~~l~~~~~~~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (191)
T 1t0i_A 2 KVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWSRI 81 (191)
T ss_dssp EEEEEECCCCSSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHHHHH
T ss_pred eEEEEeCCCCCCCchHHHHHHHHHHHHHhhccCCCCceEEEEehhhcCCCCCCCccccccccccCcccCCcHHHHHHHHH
Confidence 5789999987 999999999987543 4 67888888765221 23
Q ss_pred ccccCeEEEEeccCCCCCCCCcHHHHHHHHh
Q psy8996 49 IEHEALILVVASTFGNGDPPENGQEFAQNLH 79 (95)
Q Consensus 49 l~~~~~vi~v~ST~G~Ge~Pdn~~~F~~~L~ 79 (95)
+..++.+||++.+| .|.+|...+.|++++.
T Consensus 82 l~~aD~iI~~sP~y-~~~~p~~lK~~iD~~~ 111 (191)
T 1t0i_A 82 VNALDIIVFVTPQY-NWGYPAALKNAIDRLY 111 (191)
T ss_dssp HHTCSEEEEEEECB-TTBCCHHHHHHHHTCS
T ss_pred HHhCCEEEEEeceE-CCCCCHHHHHHHHHHH
Confidence 55789999999999 5778889999998875
No 43
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=98.22 E-value=3.4e-06 Score=59.08 Aligned_cols=75 Identities=11% Similarity=-0.077 Sum_probs=62.5
Q ss_pred cccccEEEeCC--CchHHHHHHHHHHH-HhCCCceEEeeCCCCCc---------------ccccccCeEEEEeccCCCCC
Q psy8996 5 EKREPAFSISE--VHYANNYTTESEVH-YANNYTTEVLRMDEYDM---------------SSIEHEALILVVASTFGNGD 66 (95)
Q Consensus 5 ~~~~~~~ygS~--tG~ae~~A~~l~~~-~~~g~~~~v~~l~~~~~---------------~~l~~~~~vi~v~ST~G~Ge 66 (95)
.+++.++|||. .|++..+|+.+.+. ...|.+++++++.+++. +.+...+.+||++.+| .|.
T Consensus 34 ~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~sP~Y-n~s 112 (247)
T 2q62_A 34 RPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPER-HGA 112 (247)
T ss_dssp CCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEEEECS-SSS
T ss_pred CCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEEeCCC-CCC
Confidence 35789999997 49999999999774 45789999999988761 2345789999999999 788
Q ss_pred CCCcHHHHHHHHhh
Q psy8996 67 PPENGQEFAQNLHA 80 (95)
Q Consensus 67 ~Pdn~~~F~~~L~~ 80 (95)
+|...+.|++|+..
T Consensus 113 ipa~LKn~iD~l~~ 126 (247)
T 2q62_A 113 MTGIMKAQIDWIPL 126 (247)
T ss_dssp CCHHHHHHHHTSCS
T ss_pred ccHHHHHHHHHhhh
Confidence 99999999999864
No 44
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=98.19 E-value=3.7e-06 Score=56.42 Aligned_cols=74 Identities=14% Similarity=0.134 Sum_probs=61.9
Q ss_pred ccccEEEeCC--CchHHHHHHHHHHHHhCCCceEEeeCCCCCc-----------------ccccccCeEEEEeccCCCCC
Q psy8996 6 KREPAFSISE--VHYANNYTTESEVHYANNYTTEVLRMDEYDM-----------------SSIEHEALILVVASTFGNGD 66 (95)
Q Consensus 6 ~~~~~~ygS~--tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~~-----------------~~l~~~~~vi~v~ST~G~Ge 66 (95)
+++.+++||. .|++..+|+.+.+.++.|.+++++++.+++. +.+...|.+||++.+| .|.
T Consensus 3 ~kilii~gS~r~~s~t~~la~~~~~~~~~~~~v~~~dl~~lp~~~~~~~~~~~~~~~~~~~~i~~AD~iV~~sP~y-~~~ 81 (192)
T 3fvw_A 3 KRILFIVGSFSEGSFNRQLAKKAETIIGDRAQVSYLSYDRVPFFNQDLETSVHPEVAHAREEVQEADAIWIFSPVY-NYA 81 (192)
T ss_dssp CEEEEEESCCSTTCHHHHHHHHHHHHHTTSSEEEECCCSSCCCCCGGGTTSCCHHHHHHHHHHHHCSEEEEECCCB-TTB
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHhcCCCCEEEEEeCccCCCCCcccccCCcHHHHHHHHHHHhCCEEEEECccc-ccC
Confidence 4788999997 7999999999987666788888888876542 2456789999999999 688
Q ss_pred CCCcHHHHHHHHhh
Q psy8996 67 PPENGQEFAQNLHA 80 (95)
Q Consensus 67 ~Pdn~~~F~~~L~~ 80 (95)
+|.-.+.|.+++..
T Consensus 82 ~p~~lK~~iD~~~~ 95 (192)
T 3fvw_A 82 IPGPVKNLLDWLSR 95 (192)
T ss_dssp CCHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHhhc
Confidence 99999999999975
No 45
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=98.10 E-value=6.3e-06 Score=56.76 Aligned_cols=72 Identities=7% Similarity=0.103 Sum_probs=59.1
Q ss_pred cccEEEeCCC--chHHHHHHHHHHHH-hC-CCceEEeeCCCCCc---------------------c-------cccccCe
Q psy8996 7 REPAFSISEV--HYANNYTTESEVHY-AN-NYTTEVLRMDEYDM---------------------S-------SIEHEAL 54 (95)
Q Consensus 7 ~~~~~ygS~t--G~ae~~A~~l~~~~-~~-g~~~~v~~l~~~~~---------------------~-------~l~~~~~ 54 (95)
++-++|||.. |+|+.+|+.+.+.+ .. |.+++++++.++++ + .+...|.
T Consensus 3 kIliI~gS~r~~s~T~~la~~i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~AD~ 82 (242)
T 1sqs_A 3 KIFIYAGVRNHNSKTLEYTKRLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLESDI 82 (242)
T ss_dssp EEEEEECCCCTTCHHHHHHHHHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHHCSE
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHHHCCE
Confidence 6789999985 99999999997744 45 88999999886532 1 2457789
Q ss_pred EEEEeccCCCCCCCCcHHHHHHHHh
Q psy8996 55 ILVVASTFGNGDPPENGQEFAQNLH 79 (95)
Q Consensus 55 vi~v~ST~G~Ge~Pdn~~~F~~~L~ 79 (95)
+||++.+| .|.+|...+.|.+++.
T Consensus 83 iI~~sP~y-~~~~p~~lK~~iDr~~ 106 (242)
T 1sqs_A 83 IIISSPVY-LQNVSVDTKNFIERIG 106 (242)
T ss_dssp EEEEEEEC-SSSCCHHHHHHHHHTG
T ss_pred EEEEcccc-ccCCCHHHHHHHHHHH
Confidence 99999999 6889999999999984
No 46
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=98.06 E-value=6.7e-06 Score=53.74 Aligned_cols=69 Identities=6% Similarity=0.087 Sum_probs=51.5
Q ss_pred cccEEEeCC--CchHHHHHHHHHHHHhCCCceEEeeCCCCCc------------------------ccccccCeEEEEec
Q psy8996 7 REPAFSISE--VHYANNYTTESEVHYANNYTTEVLRMDEYDM------------------------SSIEHEALILVVAS 60 (95)
Q Consensus 7 ~~~~~ygS~--tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~~------------------------~~l~~~~~vi~v~S 60 (95)
++-++|||. +||++.+|+.+.+ ++.++++++.++++ +++..+|.+||++.
T Consensus 5 kilii~~S~r~~g~t~~la~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~~P 80 (184)
T 1rli_A 5 KIAVINGGTRSGGNTDVLAEKAVQ----GFDAEHIYLQKYPIQPIEDLRHAQGGFRPVQDDYDSIIERILQCHILIFATP 80 (184)
T ss_dssp CEEEEESSCSSCCHHHHHHHHHHT----TTCCEEEEC-----------------------CHHHHHHHHHTCSEEEEEEE
T ss_pred EEEEEECCCCCCccHHHHHHHHHc----CCeEEEEEcCCCCCccCCccccccCCCCCCCCCHHHHHHHHHhCCEEEEEeC
Confidence 578999995 4999999998876 33566666654422 24568899999999
Q ss_pred cCCCCCCCCcHHHHHHHHhh
Q psy8996 61 TFGNGDPPENGQEFAQNLHA 80 (95)
Q Consensus 61 T~G~Ge~Pdn~~~F~~~L~~ 80 (95)
+| .|.+|...+.|.+++..
T Consensus 81 ~y-~~~~p~~lK~~iD~~~~ 99 (184)
T 1rli_A 81 IY-WFGMSGTLKLFIDRWSQ 99 (184)
T ss_dssp CB-TTBCCHHHHHHHHTHHH
T ss_pred cc-ccCCcHHHHHHHHHhHH
Confidence 99 68899999999998753
No 47
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=98.00 E-value=9.8e-06 Score=57.92 Aligned_cols=75 Identities=9% Similarity=-0.049 Sum_probs=62.3
Q ss_pred cccccEEEeCCC--chHHHHHHHHHHHH-hCCCceEEeeCCCCCc----------------ccccccCeEEEEeccCCCC
Q psy8996 5 EKREPAFSISEV--HYANNYTTESEVHY-ANNYTTEVLRMDEYDM----------------SSIEHEALILVVASTFGNG 65 (95)
Q Consensus 5 ~~~~~~~ygS~t--G~ae~~A~~l~~~~-~~g~~~~v~~l~~~~~----------------~~l~~~~~vi~v~ST~G~G 65 (95)
.+++.++|||.. |++..+|+.+.+.+ ..|.+++++++.++++ +.+...+.+||++.+| .|
T Consensus 58 ~mKILiI~GS~R~~S~T~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~aSP~Y-n~ 136 (279)
T 2fzv_A 58 PVRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCSPER-HG 136 (279)
T ss_dssp CCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEEE-TT
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEEEcCcc-cc
Confidence 357899999975 99999999997744 5799999999988752 1344678999999999 78
Q ss_pred CCCCcHHHHHHHHhh
Q psy8996 66 DPPENGQEFAQNLHA 80 (95)
Q Consensus 66 e~Pdn~~~F~~~L~~ 80 (95)
.+|...+.|++|+..
T Consensus 137 sipg~LKn~IDrl~~ 151 (279)
T 2fzv_A 137 QITSVMKAQIDHLPL 151 (279)
T ss_dssp EECHHHHHHHHHSCS
T ss_pred CcCHHHHHHHHHHhh
Confidence 899999999999964
No 48
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=97.86 E-value=2.1e-05 Score=53.17 Aligned_cols=74 Identities=8% Similarity=0.042 Sum_probs=60.0
Q ss_pred ccccEEEeC--CCchHHHHHHHHHHHHhCCCceE-EeeCCCCCc------------------ccccccCeEEEEeccCCC
Q psy8996 6 KREPAFSIS--EVHYANNYTTESEVHYANNYTTE-VLRMDEYDM------------------SSIEHEALILVVASTFGN 64 (95)
Q Consensus 6 ~~~~~~ygS--~tG~ae~~A~~l~~~~~~g~~~~-v~~l~~~~~------------------~~l~~~~~vi~v~ST~G~ 64 (95)
.++.+++|| ..+++..+|+.+.+.+..|.+++ ++++.+++. +.+...|.+||++.+| .
T Consensus 7 mkIl~I~GS~r~~s~t~~la~~~~~~~~~g~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~~~~i~~AD~iVi~tP~Y-~ 85 (199)
T 4hs4_A 7 LHFVTLLGSLRKASFNAAVARALPEIAPEGIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTPEY-N 85 (199)
T ss_dssp EEEEEEECCCSTTCHHHHHHHHHHHHCCTTEEEEECCCGGGSCCCCHHHHHHCCCHHHHHHHHHHHHSSEEEEEECCB-T
T ss_pred CEEEEEEcCCCCCChHHHHHHHHHHHccCCCEEEEEEehhhcCCCCccccccCCCHHHHHHHHHHHhCCEEEEEcCcc-C
Confidence 478999999 67999999999987666677788 777755421 1255789999999999 7
Q ss_pred CCCCCcHHHHHHHHhh
Q psy8996 65 GDPPENGQEFAQNLHA 80 (95)
Q Consensus 65 Ge~Pdn~~~F~~~L~~ 80 (95)
|.+|.-.+.|.+|+..
T Consensus 86 ~s~p~~LK~~iD~~~~ 101 (199)
T 4hs4_A 86 YSVPGVLKNAIDWLSR 101 (199)
T ss_dssp TBCCHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHhcc
Confidence 8899999999999976
No 49
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=97.85 E-value=2.9e-05 Score=51.92 Aligned_cols=74 Identities=9% Similarity=0.100 Sum_probs=59.2
Q ss_pred ccccEEEeCCC----chHHHHHHHHHH-HHhCC--CceEEeeCC--CCCcc-----------------------------
Q psy8996 6 KREPAFSISEV----HYANNYTTESEV-HYANN--YTTEVLRMD--EYDMS----------------------------- 47 (95)
Q Consensus 6 ~~~~~~ygS~t----G~ae~~A~~l~~-~~~~g--~~~~v~~l~--~~~~~----------------------------- 47 (95)
+++-++|||-. |++..+|+.+.+ +.+.| .+++++++. +.+..
T Consensus 2 ~kilii~gS~r~~~~s~t~~la~~~~~~~~~~g~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 81 (208)
T 2hpv_A 2 SKLLVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILDVYAPETNMPEIDEELLSAWGALRAGAAFETLSENQQQK 81 (208)
T ss_dssp CEEEEEECCSSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTCGGGCCCCCCHHHHHHHHHHHHTCCGGGSCHHHHHH
T ss_pred CeEEEEEecCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEeeCCcccCCCCcCCHHHHHhhcCcccccccccCCHHHHhh
Confidence 35789999976 999999999976 44455 889999888 64311
Q ss_pred ---------cccccCeEEEEeccCCCCCCCCcHHHHHHHHhh
Q psy8996 48 ---------SIEHEALILVVASTFGNGDPPENGQEFAQNLHA 80 (95)
Q Consensus 48 ---------~l~~~~~vi~v~ST~G~Ge~Pdn~~~F~~~L~~ 80 (95)
.+...|.+||++..| .+.+|...+.|++++..
T Consensus 82 ~~~~~~~~~~l~~aD~iv~~~P~y-~~~~pa~lK~~iD~~~~ 122 (208)
T 2hpv_A 82 VARFNELTDQFLSADKVVIANPMW-NLNVPTRLKAWVDTINV 122 (208)
T ss_dssp HHHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhCCEEEEEeccc-cCCCCHHHHHHHHHHhc
Confidence 255778999999999 78899999999999864
No 50
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=96.84 E-value=6.1e-06 Score=55.83 Aligned_cols=74 Identities=9% Similarity=0.039 Sum_probs=58.8
Q ss_pred ccccEEEeCCC--chHHHHHHHHHHHHhCCCceEEe-eCCCCC------------------cccccccCeEEEEeccCCC
Q psy8996 6 KREPAFSISEV--HYANNYTTESEVHYANNYTTEVL-RMDEYD------------------MSSIEHEALILVVASTFGN 64 (95)
Q Consensus 6 ~~~~~~ygS~t--G~ae~~A~~l~~~~~~g~~~~v~-~l~~~~------------------~~~l~~~~~vi~v~ST~G~ 64 (95)
.++.++|||.. |+++.+|+.+.+.+..|.+++++ ++.+++ .+.+...|.+||++.+| .
T Consensus 7 mkIliI~gS~r~~s~t~~la~~~~~~~~~g~~v~~i~dl~~lp~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y-~ 85 (199)
T 3s2y_A 7 LHFVTLLGSLRKASFNAAVARALPEIAPEGIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTPEY-N 85 (199)
Confidence 36889999975 89999999997755448888888 776521 12456789999999999 6
Q ss_pred CCCCCcHHHHHHHHhh
Q psy8996 65 GDPPENGQEFAQNLHA 80 (95)
Q Consensus 65 Ge~Pdn~~~F~~~L~~ 80 (95)
|.+|...+.|++|+..
T Consensus 86 ~s~p~~lK~~iD~l~~ 101 (199)
T 3s2y_A 86 YSVPGVLKNAIDWLSR 101 (199)
Confidence 7899999999999865
No 51
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=97.62 E-value=0.00012 Score=49.30 Aligned_cols=74 Identities=12% Similarity=0.107 Sum_probs=58.6
Q ss_pred ccccEEEeC--CCchHHHHHHHHHHHHhCCCceEEeeCCCCCc---c--------------cccccCeEEEEeccCCCCC
Q psy8996 6 KREPAFSIS--EVHYANNYTTESEVHYANNYTTEVLRMDEYDM---S--------------SIEHEALILVVASTFGNGD 66 (95)
Q Consensus 6 ~~~~~~ygS--~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~~---~--------------~l~~~~~vi~v~ST~G~Ge 66 (95)
|++.++.|| ....+..+|+.+++....+++++++++.+++. + .+...|.+||++..| +|.
T Consensus 3 k~I~vi~GS~R~~S~~~~la~~~~~~~~~~~~~~~idl~dLP~~~~d~~~~~p~~~~~l~~~i~~aD~~ii~tPeY-n~s 81 (190)
T 3u7r_A 3 KTVAVMVGSLRKDSLNHKLMKVLQKLAEGRLEFHLLHIGDLPHYNDDLWADAPESVLRLKDRIEHSDAVLAITPEY-NRS 81 (190)
T ss_dssp EEEEEEESCCSTTCHHHHHHHHHHHHHTTTEEEEECCGGGSCCCCGGGGGGCCHHHHHHHHHHHTSSEEEEECCCB-TTB
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHhccCCCEEEEEecccCCCCCCCcccCCCHHHHHHHHHHHhCCcEEEechhh-ccc
Confidence 578899998 45567889988887777788888888766421 1 234678999999999 788
Q ss_pred CCCcHHHHHHHHhh
Q psy8996 67 PPENGQEFAQNLHA 80 (95)
Q Consensus 67 ~Pdn~~~F~~~L~~ 80 (95)
.|.-.+.|.+||..
T Consensus 82 ~pg~LKn~iDwlsr 95 (190)
T 3u7r_A 82 YPGMIKNAIDWATR 95 (190)
T ss_dssp CCHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHhcc
Confidence 99999999999964
No 52
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=97.43 E-value=0.00039 Score=46.71 Aligned_cols=74 Identities=9% Similarity=0.093 Sum_probs=58.0
Q ss_pred ccccEEEeCCCc---hHHHHHHHHHHHH-hC--CCceEEeeCCCCCc---------------------------------
Q psy8996 6 KREPAFSISEVH---YANNYTTESEVHY-AN--NYTTEVLRMDEYDM--------------------------------- 46 (95)
Q Consensus 6 ~~~~~~ygS~tG---~ae~~A~~l~~~~-~~--g~~~~v~~l~~~~~--------------------------------- 46 (95)
+++-+++||-.+ ++..+|+.+.+.+ +. |.++++.++.+.+.
T Consensus 2 mkiLii~gSpr~~~s~t~~l~~~~~~~~~~~~~g~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (212)
T 3r6w_A 2 SRILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREVGRVPLPAVTEAFVAAAFHPQPEQRSLAMQADLALSDQL 81 (212)
T ss_dssp CCEEEEECCSCSTTCHHHHHHHHHHHHHHHHCTTCCEEEEESSSSCCCCCCHHHHHHHTCSSGGGCCHHHHHHHHHHHHH
T ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHHhhcCCcccCCHHHHHHHHHHHHH
Confidence 367899999654 6999999997644 44 88999998865421
Q ss_pred -ccccccCeEEEEeccCCCCCCCCcHHHHHHHHhh
Q psy8996 47 -SSIEHEALILVVASTFGNGDPPENGQEFAQNLHA 80 (95)
Q Consensus 47 -~~l~~~~~vi~v~ST~G~Ge~Pdn~~~F~~~L~~ 80 (95)
+.+...|.+||++..| .+.+|...+.|++++..
T Consensus 82 ~~~l~~AD~iV~~~P~y-~~~~pa~lK~~iD~~~~ 115 (212)
T 3r6w_A 82 VGELFDSDLLVISTPMY-NFSVPSGLKAWIDQIVR 115 (212)
T ss_dssp HHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHCC
T ss_pred HHHHHhCCEEEEEcCcc-cccCCHHHHHHHHHHhh
Confidence 1245678999999999 78899999999999954
No 53
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=97.25 E-value=0.00019 Score=48.16 Aligned_cols=74 Identities=8% Similarity=0.056 Sum_probs=58.3
Q ss_pred ccccEEEeC--CCchHHHHHHHHHHHHhCCCceE-EeeCCCCCc-------------------ccccccCeEEEEeccCC
Q psy8996 6 KREPAFSIS--EVHYANNYTTESEVHYANNYTTE-VLRMDEYDM-------------------SSIEHEALILVVASTFG 63 (95)
Q Consensus 6 ~~~~~~ygS--~tG~ae~~A~~l~~~~~~g~~~~-v~~l~~~~~-------------------~~l~~~~~vi~v~ST~G 63 (95)
.++.+++|| ..+++..+|+.+.++...|++++ ++++.+++. +.+...|.+||++.+|
T Consensus 5 mkil~I~GS~r~~s~t~~l~~~~~~~~~~g~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~l~~~i~~AD~iv~~sP~y- 83 (193)
T 3svl_A 5 LQVVTLLGSLRKGSFNGMVARTLPKIAPASMEVNALPSIADIPLYDADVQQEEGFPATVEALAEQIRQADGVVIVTPEY- 83 (193)
T ss_dssp EEEEEEECCCSTTCHHHHHHHHGGGTSCTTEEEEECCCSTTCCCCCHHHHHHTCSCHHHHHHHHHHHHSSEEEEEECCB-
T ss_pred CEEEEEEccCCCCCHHHHHHHHHHHHccCCCEEEEEEeHHHCCCCCcccccccCCCHHHHHHHHHHHHCCEEEEEeccc-
Confidence 367899998 46888899988766555677788 778776432 1244678999999999
Q ss_pred CCCCCCcHHHHHHHHhh
Q psy8996 64 NGDPPENGQEFAQNLHA 80 (95)
Q Consensus 64 ~Ge~Pdn~~~F~~~L~~ 80 (95)
.|.+|...+.|++|+..
T Consensus 84 ~~~~~~~lK~~iD~~~~ 100 (193)
T 3svl_A 84 NYSVPGGLKNAIDWLSR 100 (193)
T ss_dssp TTBCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 78899999999999976
No 54
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=97.20 E-value=0.0012 Score=46.35 Aligned_cols=73 Identities=5% Similarity=0.015 Sum_probs=59.1
Q ss_pred cccEEEeCCC--chHHHHHHHHHH-HHhCCCceEEeeCCCCCc-----------------------------------cc
Q psy8996 7 REPAFSISEV--HYANNYTTESEV-HYANNYTTEVLRMDEYDM-----------------------------------SS 48 (95)
Q Consensus 7 ~~~~~ygS~t--G~ae~~A~~l~~-~~~~g~~~~v~~l~~~~~-----------------------------------~~ 48 (95)
++-++|||-. |++..+|+.+.+ +...|.++++.++.+.+. ++
T Consensus 4 kiLiI~gSpr~~s~t~~la~~~~~~l~~~g~eV~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd 83 (273)
T 1d4a_A 4 RALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKLKDPANFQYPAESVLAYKEGHLSPD 83 (273)
T ss_dssp EEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTTTCCCCCCGGGBCSCCSSTTSCCHHHHHHHHHHHTCBCHH
T ss_pred EEEEEEeCCCCccHHHHHHHHHHHHHHhCCCeEEEEEccccCCCCcCCHHHHHhhccCcccccchhhhhhhhhcccCcHH
Confidence 6789999966 689999999876 445788999999987542 11
Q ss_pred -------ccccCeEEEEeccCCCCCCCCcHHHHHHHHhh
Q psy8996 49 -------IEHEALILVVASTFGNGDPPENGQEFAQNLHA 80 (95)
Q Consensus 49 -------l~~~~~vi~v~ST~G~Ge~Pdn~~~F~~~L~~ 80 (95)
|...|.+||++..| .+.+|.-.+.|++++..
T Consensus 84 ~~~~~~~l~~AD~IV~~~P~y-~~s~Pa~LK~~iDrv~~ 121 (273)
T 1d4a_A 84 IVAEQKKLEAADLVIFQFPLQ-WFGVPAILKGWFERVFI 121 (273)
T ss_dssp HHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHSC
T ss_pred HHHHHHHHHhCCEEEEECchh-hccCCHHHHHHHHHHHh
Confidence 55678999999999 67899999999999864
No 55
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=97.15 E-value=0.0012 Score=44.12 Aligned_cols=73 Identities=5% Similarity=0.094 Sum_probs=56.9
Q ss_pred cccEEEeCC--CchHHHHHHHHHHHHhCCCceEEeeCCCCCcc-------------------------cccccCeEEEEe
Q psy8996 7 REPAFSISE--VHYANNYTTESEVHYANNYTTEVLRMDEYDMS-------------------------SIEHEALILVVA 59 (95)
Q Consensus 7 ~~~~~ygS~--tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~~~-------------------------~l~~~~~vi~v~ 59 (95)
++-+++||- .+++..+|+.+.+.+..|.++++.++.+.+++ .|...|.+||++
T Consensus 2 kiLiI~gspr~~s~t~~l~~~~~~~~~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~~ 81 (196)
T 3lcm_A 2 KILIVYTHPNPTSFNAEILKQVQTNLSKEHTVSTLDLYAEHFDPVLQFNETHKRRDLAKVAEMEKYRDLVTWADHLIFIF 81 (196)
T ss_dssp EEEEEECCSCTTSHHHHHHHHHHHHSCTTSEEEEEETTTTTCCCCCCCCSSSCGGGGGGCGGGHHHHHHHHHCSEEEEEE
T ss_pred EEEEEEeCCCCCChHHHHHHHHHHHhcCCCeEEEEEcccCCCCccCChHHHHhhcCCCCcHHHHHHHHHHHhCCEEEEEC
Confidence 467889984 45788999988764466888999999765321 234678999999
Q ss_pred ccCCCCCCCCcHHHHHHHHhh
Q psy8996 60 STFGNGDPPENGQEFAQNLHA 80 (95)
Q Consensus 60 ST~G~Ge~Pdn~~~F~~~L~~ 80 (95)
..| .+.+|.-.+.|++++..
T Consensus 82 P~y-~~~~pa~LK~~iD~v~~ 101 (196)
T 3lcm_A 82 PIW-WSGMPAILKGFIDRVFV 101 (196)
T ss_dssp ECB-TTBCCHHHHHHHHHHSC
T ss_pred chh-hccccHHHHHHHHHHcc
Confidence 999 78899999999999854
No 56
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=97.14 E-value=0.00034 Score=47.09 Aligned_cols=74 Identities=9% Similarity=0.073 Sum_probs=57.8
Q ss_pred ccccEEEeC--CCchHHHHHHHHHH----HH-hC--CCceEEeeCCCCCcc-------------------cccccCeEEE
Q psy8996 6 KREPAFSIS--EVHYANNYTTESEV----HY-AN--NYTTEVLRMDEYDMS-------------------SIEHEALILV 57 (95)
Q Consensus 6 ~~~~~~ygS--~tG~ae~~A~~l~~----~~-~~--g~~~~v~~l~~~~~~-------------------~l~~~~~vi~ 57 (95)
+++.++.|| ..+++..+|+.+.+ .+ ++ |.+++++++.++++. .+...|.+||
T Consensus 12 ~~il~i~GS~r~~S~t~~La~~~~~~~~~~l~~~~~g~eve~idL~d~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~ivi 91 (191)
T 3k1y_A 12 RTLAVISAGLSTPSSTRQIADSISEAVTAAVSARGEALSVSTIELSELIPDLMTAMTTRVHTTKLEEITSALSASDGLVV 91 (191)
T ss_dssp EEEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCHHHHTTTTSSSCCCHHHHHHHHHHHHCSEEEE
T ss_pred ceEEEEECCCCCCCHHHHHHHHHHHHhHHHHHhcCCCceEEEEEHHhCCCcccChhhcCCCCHHHHHHHHHHHHCCEEEE
Confidence 577899998 56899999999865 22 34 778888888766421 2346789999
Q ss_pred EeccCCCCCCCCcHHHHHHHHhh
Q psy8996 58 VASTFGNGDPPENGQEFAQNLHA 80 (95)
Q Consensus 58 v~ST~G~Ge~Pdn~~~F~~~L~~ 80 (95)
++.+| .|.+|...+.|++|+..
T Consensus 92 ~sP~Y-~~~~~~~lK~~iD~~~~ 113 (191)
T 3k1y_A 92 ATPVF-KASYTGLFKMFFDILDT 113 (191)
T ss_dssp EEECB-TTBSCHHHHHHHHHSCT
T ss_pred EcCcc-CCcCcHHHHHHHHHhhh
Confidence 99999 78899999999999864
No 57
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=96.93 E-value=0.00043 Score=46.66 Aligned_cols=74 Identities=5% Similarity=-0.103 Sum_probs=57.8
Q ss_pred ccccEEEeCCCchHHHHHHHHHH-HHhCCCceEEeeCCCCCc----------ccccccCeEEEEeccCCCCCCCCcHHHH
Q psy8996 6 KREPAFSISEVHYANNYTTESEV-HYANNYTTEVLRMDEYDM----------SSIEHEALILVVASTFGNGDPPENGQEF 74 (95)
Q Consensus 6 ~~~~~~ygS~tG~ae~~A~~l~~-~~~~g~~~~v~~l~~~~~----------~~l~~~~~vi~v~ST~G~Ge~Pdn~~~F 74 (95)
+++-+++||-.++...+++.+.+ +.+.|.++++.++.+..+ +.+...|.+||++..| .+.+|.-.+.|
T Consensus 2 mkiLiI~gsp~~~~s~l~~~l~~~~~~~g~ev~~~dL~~~~~~~~~dv~~~~~~l~~AD~iv~~~P~y-~~~~pa~lK~~ 80 (192)
T 3f2v_A 2 PKTLIILAHPNISQSTVHKHWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQFPIY-WFNCPPLLKQW 80 (192)
T ss_dssp CCEEEEECCTTGGGCSHHHHHHHHHTTCTTTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEEEECB-TTBCCHHHHHH
T ss_pred CEEEEEEeCCCccHHHHHHHHHHHHHhCCCeEEEEEchhcCCCCchhHHHHHHHHHhCCEEEEEcChh-hcCCCHHHHHH
Confidence 46789999988775578888866 445687899998865322 2466889999999999 78899999999
Q ss_pred HHHHhh
Q psy8996 75 AQNLHA 80 (95)
Q Consensus 75 ~~~L~~ 80 (95)
++++..
T Consensus 81 iDrv~~ 86 (192)
T 3f2v_A 81 LDEVLT 86 (192)
T ss_dssp HHHHSC
T ss_pred HHHHhh
Confidence 999854
No 58
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=96.92 E-value=0.0029 Score=43.49 Aligned_cols=75 Identities=8% Similarity=0.050 Sum_probs=60.9
Q ss_pred ccccEEEeCC------CchHHHHHHHHHHH-HhCCCceEEeeCCC-CCc----ccccccCeEEEEeccCCCCCCCCcHHH
Q psy8996 6 KREPAFSISE------VHYANNYTTESEVH-YANNYTTEVLRMDE-YDM----SSIEHEALILVVASTFGNGDPPENGQE 73 (95)
Q Consensus 6 ~~~~~~ygS~------tG~ae~~A~~l~~~-~~~g~~~~v~~l~~-~~~----~~l~~~~~vi~v~ST~G~Ge~Pdn~~~ 73 (95)
+++-+++||- .+++..+++.+.+. ...|.++++.++++ +|+ +.+...|.+||++..| .+.+|.-.+.
T Consensus 26 ~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~~~~Dv~~~~~~l~~aD~iv~~~P~y-~~~~p~~lK~ 104 (218)
T 3rpe_A 26 SNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVDQGYDIESEIENYLWADTIIYQMPAW-WMGEPWILKK 104 (218)
T ss_dssp CCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGGGCCCHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHH
T ss_pred cceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECCCccCHHHHHHHHHhCCEEEEECChH-hccCCHHHHH
Confidence 5788999986 46888999988764 45899999999984 443 3466889999999999 7889999999
Q ss_pred HHHHHhhC
Q psy8996 74 FAQNLHAL 81 (95)
Q Consensus 74 F~~~L~~~ 81 (95)
|++++...
T Consensus 105 ~iD~v~~~ 112 (218)
T 3rpe_A 105 YIDEVFTD 112 (218)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99988653
No 59
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=96.92 E-value=0.0022 Score=44.08 Aligned_cols=74 Identities=8% Similarity=0.065 Sum_probs=58.3
Q ss_pred ccccEEEeCC--CchHHHHHHHHHH-HHhCCCceEEeeCCCCCc-----------------------------------c
Q psy8996 6 KREPAFSISE--VHYANNYTTESEV-HYANNYTTEVLRMDEYDM-----------------------------------S 47 (95)
Q Consensus 6 ~~~~~~ygS~--tG~ae~~A~~l~~-~~~~g~~~~v~~l~~~~~-----------------------------------~ 47 (95)
+++-+++||- .+++..+|+.+.+ +.+.|.+++++++.+.+. +
T Consensus 2 mkiLiI~gspr~~S~t~~l~~~~~~~l~~~g~ev~~~dL~~~~~~P~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d 81 (228)
T 3tem_A 2 KKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLAS 81 (228)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHHHTCEEEEEETTTTTCCCCCCGGGBCSCCSCTTSCCHHHHHHHHHHHTCBCH
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEhhhcCCcccCCHHHHhhhccccccccchhhhhhhhhcCCCcH
Confidence 5678999985 4568999999876 445789999999976431 1
Q ss_pred -------cccccCeEEEEeccCCCCCCCCcHHHHHHHHhh
Q psy8996 48 -------SIEHEALILVVASTFGNGDPPENGQEFAQNLHA 80 (95)
Q Consensus 48 -------~l~~~~~vi~v~ST~G~Ge~Pdn~~~F~~~L~~ 80 (95)
.+...|.+||++..| .+.+|.-.+.|++++..
T Consensus 82 d~~~~~~~l~~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~ 120 (228)
T 3tem_A 82 DITDEQKKVREADLVIFQFPLY-WFSVPAILKGWMDRVLC 120 (228)
T ss_dssp HHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCCEEEEECChh-hcccCHHHHHHHHHHhh
Confidence 134678999999999 78899999999999864
No 60
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=96.86 E-value=0.0035 Score=42.14 Aligned_cols=73 Identities=8% Similarity=0.129 Sum_probs=57.9
Q ss_pred ccccEEEeCCC------chHHHHHHHHHHH-HhCCCceEEeeCCC-CCcc----cccccCeEEEEeccCCCCCCCCcHHH
Q psy8996 6 KREPAFSISEV------HYANNYTTESEVH-YANNYTTEVLRMDE-YDMS----SIEHEALILVVASTFGNGDPPENGQE 73 (95)
Q Consensus 6 ~~~~~~ygS~t------G~ae~~A~~l~~~-~~~g~~~~v~~l~~-~~~~----~l~~~~~vi~v~ST~G~Ge~Pdn~~~ 73 (95)
.++-++.||-- +++..+|+.+.+. .+.|.++++.++.+ .++. .+...|.+||++..| .+.+|.-.+.
T Consensus 13 ~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~~AD~iV~~~P~y-~~s~pa~LK~ 91 (204)
T 2amj_A 13 SNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFLWADVVIWQMPGW-WMGAPWTVKK 91 (204)
T ss_dssp CEEEEEECCC------CHHHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHH
T ss_pred cCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHcCCEEEEEeCCccccHHHHHHHHHhCCEEEEECCcc-ccCCCHHHHH
Confidence 45678888766 8999999998764 45688999999975 3332 456789999999999 6889999999
Q ss_pred HHHHHh
Q psy8996 74 FAQNLH 79 (95)
Q Consensus 74 F~~~L~ 79 (95)
|++.+.
T Consensus 92 ~iDrv~ 97 (204)
T 2amj_A 92 YIDDVF 97 (204)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999764
No 61
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=96.16 E-value=0.011 Score=39.87 Aligned_cols=74 Identities=8% Similarity=-0.010 Sum_probs=57.5
Q ss_pred ccccEEEeCC----CchHHHHHHHHHHH-HhC--CCceEEeeCCCCCcc-------------------------------
Q psy8996 6 KREPAFSISE----VHYANNYTTESEVH-YAN--NYTTEVLRMDEYDMS------------------------------- 47 (95)
Q Consensus 6 ~~~~~~ygS~----tG~ae~~A~~l~~~-~~~--g~~~~v~~l~~~~~~------------------------------- 47 (95)
+++-+++||- .+++..+|+.+.+. .+. |.++++.++.+.+..
T Consensus 5 ~kiLiI~gSpr~~~~S~s~~l~~~~~~~~~~~~~g~ev~~~dL~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (211)
T 3p0r_A 5 TKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEELPYVGVDMINGTFKAGKGFDLTEEEAKAVAVAD 84 (211)
T ss_dssp CEEEEEECCCSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEEGGGSCCCCCCHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred CEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHhhhccCccccCCHHHHhhHHHHH
Confidence 4678999995 48899999998764 444 788999888754310
Q ss_pred ----cccccCeEEEEeccCCCCCCCCcHHHHHHHHhh
Q psy8996 48 ----SIEHEALILVVASTFGNGDPPENGQEFAQNLHA 80 (95)
Q Consensus 48 ----~l~~~~~vi~v~ST~G~Ge~Pdn~~~F~~~L~~ 80 (95)
.+...|.+||++..| .+.+|.-.+.|++++..
T Consensus 85 ~~~~~~~~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~ 120 (211)
T 3p0r_A 85 KYLNQFLEADKVVFGFPLW-NLTIPAVLHTYIDYLNR 120 (211)
T ss_dssp HHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHCC
T ss_pred HHHHHHHhCCEEEEEcChh-cccCCHHHHHHHHHHhc
Confidence 134678999999999 78899999999999864
No 62
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Probab=95.39 E-value=0.044 Score=37.34 Aligned_cols=75 Identities=9% Similarity=0.054 Sum_probs=57.1
Q ss_pred ccccEEEeCC-----CchHHHHHHHHHHH-HhC--CC-ceEEeeCCCCCcc-----------------------------
Q psy8996 6 KREPAFSISE-----VHYANNYTTESEVH-YAN--NY-TTEVLRMDEYDMS----------------------------- 47 (95)
Q Consensus 6 ~~~~~~ygS~-----tG~ae~~A~~l~~~-~~~--g~-~~~v~~l~~~~~~----------------------------- 47 (95)
.++-+++||- .+++..+++.+.+. .+. +. ++++.++.+.+..
T Consensus 5 mkIL~I~gSpr~~~~~S~s~~L~~~~~~~l~~~~~~~~ev~~idL~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 84 (223)
T 3u7i_A 5 NKTLIINAHPKVDDTSSVSIKVFKHFLESYKELISNNETIEQINLYDDVVPMIDKTVLSAWEKQGNGQELTREEQKVTER 84 (223)
T ss_dssp CEEEEEECCTTTTCTTSHHHHHHHHHHHHHHHHCCSSCEEEEEETTTSCCCCCCHHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred CEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhCCCCCeEEEEECcCCCCCCCCHHHHHHhhccccccccCHHHHHHHHH
Confidence 4678999994 58999999998764 333 56 8899988754321
Q ss_pred ------cccccCeEEEEeccCCCCCCCCcHHHHHHHHhhC
Q psy8996 48 ------SIEHEALILVVASTFGNGDPPENGQEFAQNLHAL 81 (95)
Q Consensus 48 ------~l~~~~~vi~v~ST~G~Ge~Pdn~~~F~~~L~~~ 81 (95)
.+...|.+||++..| .+.+|...+.|++++...
T Consensus 85 ~~~l~~~~~~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~ 123 (223)
T 3u7i_A 85 MSEILQQFKSANTYVIVLPLH-NFNIPSKLKDYMDNIMIA 123 (223)
T ss_dssp HHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHCCB
T ss_pred HHHHHHHHHhCCEEEEEcChh-hccCCHHHHHHHHHHhhc
Confidence 123567899999999 788999999999998653
No 63
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=93.94 E-value=0.22 Score=35.26 Aligned_cols=73 Identities=4% Similarity=-0.085 Sum_probs=55.4
Q ss_pred cccEEEeC--CCchHHHHHHHHHH-HHhCCCceEEeeCCCCCcc------------------------------------
Q psy8996 7 REPAFSIS--EVHYANNYTTESEV-HYANNYTTEVLRMDEYDMS------------------------------------ 47 (95)
Q Consensus 7 ~~~~~ygS--~tG~ae~~A~~l~~-~~~~g~~~~v~~l~~~~~~------------------------------------ 47 (95)
++-|+||+ ..+.+..+++...+ +.+.|.+|++.+|-+.+++
T Consensus 24 KiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~DLy~~~f~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv 103 (280)
T 4gi5_A 24 KVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSDLYAMRWKAGYDADDSGAPPVGEFWRPTLDSKQAFAQGTQSADI 103 (280)
T ss_dssp EEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTTTCCCSCCGGGSSSSCSSSSCCHHHHHHHHHHHTCSCHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEEEccccCCCCcCCHHHhcccccccccChhhHHHHHhhcCCCcHHH
Confidence 57789997 44677888888765 5568999999998643221
Q ss_pred -----cccccCeEEEEeccCCCCCCCCcHHHHHHHHhh
Q psy8996 48 -----SIEHEALILVVASTFGNGDPPENGQEFAQNLHA 80 (95)
Q Consensus 48 -----~l~~~~~vi~v~ST~G~Ge~Pdn~~~F~~~L~~ 80 (95)
.|...|.+||+...| .+.+|.-.+.|++.+..
T Consensus 104 ~~~~~~l~~aD~iv~~~P~~-w~~~Pa~lK~~iDrv~~ 140 (280)
T 4gi5_A 104 VAEQEKLLWADTVIFQFPLW-WFSMPAIMKGWIDRVYA 140 (280)
T ss_dssp HHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHSC
T ss_pred HHHHHHHHhCCEEEEEeccc-cccCcHHHHHHHHHhcc
Confidence 134578999999999 67789999999988754
No 64
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=93.46 E-value=0.058 Score=40.02 Aligned_cols=74 Identities=7% Similarity=-0.061 Sum_probs=55.2
Q ss_pred ccccEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCCC------CCc----ccccccCeEEEEeccCCCCCCCCcHHHHH
Q psy8996 6 KREPAFSISEVHYANNYTTESEVHYANNYTTEVLRMDE------YDM----SSIEHEALILVVASTFGNGDPPENGQEFA 75 (95)
Q Consensus 6 ~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~------~~~----~~l~~~~~vi~v~ST~G~Ge~Pdn~~~F~ 75 (95)
+++-+++||-..++..+.+.+.+.......+++.++.+ .|+ +.+...+.+||++..| .+.+|.-.+.|+
T Consensus 237 mkiLvi~gspr~~ss~~n~~l~~~~~~~~~v~v~dL~~~~p~~~~d~~~~~~~l~~aD~iv~~~P~y-w~~~Pa~lK~~i 315 (413)
T 3l9w_A 237 GMILIIYAHPYPHHSHANKRMLEQARTLEGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQ-WYSIPPLLKLWI 315 (413)
T ss_dssp CCEEEEECCSCGGGCSHHHHHHHHHHTSSSEEEEEHHHHCTTSCCCHHHHHHHHHTCSEEEEEEECB-TTBCCHHHHHHH
T ss_pred CCEEEEEECCCcchHHHHHHHHHHHhcCCCEEEEEchhhCCCCcHHHHHHHHHHHhCCEEEEECchh-hccCCHHHHHHH
Confidence 57889999988776567777766544445788887732 121 2356889999999999 777999999999
Q ss_pred HHHhh
Q psy8996 76 QNLHA 80 (95)
Q Consensus 76 ~~L~~ 80 (95)
+++..
T Consensus 316 Drv~~ 320 (413)
T 3l9w_A 316 DKVFS 320 (413)
T ss_dssp HHHSC
T ss_pred HHHHh
Confidence 99854
No 65
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=92.33 E-value=0.21 Score=32.89 Aligned_cols=69 Identities=6% Similarity=0.039 Sum_probs=47.7
Q ss_pred cccEEEeCCC---chHHHHHHHHHHHHhCCCceEEeeCCC-CCc----ccccccCeEEEEeccCCCCCCCCcHHHHHHHH
Q psy8996 7 REPAFSISEV---HYANNYTTESEVHYANNYTTEVLRMDE-YDM----SSIEHEALILVVASTFGNGDPPENGQEFAQNL 78 (95)
Q Consensus 7 ~~~~~ygS~t---G~ae~~A~~l~~~~~~g~~~~v~~l~~-~~~----~~l~~~~~vi~v~ST~G~Ge~Pdn~~~F~~~L 78 (95)
++-+++||-- +.+..+++ +..+...++++.++.+ +|+ +.+...|.+||.+..| .+.+|.-.+.|++.+
T Consensus 2 kiLii~ghP~~~~S~~~~~l~---~~~~~~~~v~v~dL~~~~D~~~~~~~l~~aD~iV~~~P~y-~~~~pa~lK~~iDrv 77 (177)
T 3ha2_A 2 QTLIIVAHPELARSNTQPFFK---AAIENFSNVTWHPLVADFNVEQEQSLLLQNDRIILEFPLY-WYSAPALLKQWMDTV 77 (177)
T ss_dssp CEEEEECCTTTTTCSSHHHHH---HHHTTCTTEEEEECCTTCCHHHHHHHHHTCSEEEEEEECB-TTBCCHHHHHHHHHH
T ss_pred eEEEEEcCCCcccCHHHHHHH---HHHhcCCCEEEEECCCcccHHHHHHHHHhCCEEEEECChh-hccCCHHHHHHHHHH
Confidence 4568888754 33333333 3333234689999985 333 2456889999999999 778999999999887
Q ss_pred h
Q psy8996 79 H 79 (95)
Q Consensus 79 ~ 79 (95)
.
T Consensus 78 ~ 78 (177)
T 3ha2_A 78 M 78 (177)
T ss_dssp S
T ss_pred h
Confidence 4
No 66
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=89.21 E-value=1.4 Score=26.72 Aligned_cols=50 Identities=14% Similarity=0.083 Sum_probs=33.7
Q ss_pred ccccEEEeCCCchHHHHHHHHHHHH-hCCCce--EEeeCCCCCcccccccCeEE
Q psy8996 6 KREPAFSISEVHYANNYTTESEVHY-ANNYTT--EVLRMDEYDMSSIEHEALIL 56 (95)
Q Consensus 6 ~~~~~~ygS~tG~ae~~A~~l~~~~-~~g~~~--~v~~l~~~~~~~l~~~~~vi 56 (95)
+++-++=||-.||+..++.+|.+.+ +.|+++ ...++.+++ ..+.++|++|
T Consensus 22 kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~~~~~~~~-~~~~~~DlIi 74 (113)
T 1tvm_A 22 RKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIE-TYMDGVHLIC 74 (113)
T ss_dssp EEEEEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEEECTTTTT-TSTTSCSEEE
T ss_pred cEEEEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEEecHHHHh-hccCCCCEEE
Confidence 4566677899999999999998755 588865 445555553 2344566433
No 67
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=88.95 E-value=0.43 Score=33.09 Aligned_cols=58 Identities=7% Similarity=0.023 Sum_probs=35.5
Q ss_pred HHHHHHHH-hCCCceEEeeCCC----CCcccccccCeEEEEeccCCCCCCCCcHHHHHHHHhh
Q psy8996 23 TTESEVHY-ANNYTTEVLRMDE----YDMSSIEHEALILVVASTFGNGDPPENGQEFAQNLHA 80 (95)
Q Consensus 23 A~~l~~~~-~~g~~~~v~~l~~----~~~~~l~~~~~vi~v~ST~G~Ge~Pdn~~~F~~~L~~ 80 (95)
+..|++++ ..||+|++..+++ ++.+.|.++++||+...+.|+--.++.-..|-+++.+
T Consensus 34 ~~~i~~~L~~~gf~V~~~t~dd~~~~~~~~~L~~~DvvV~~~~~~~~~l~~~~~~al~~~V~~ 96 (252)
T 1t0b_A 34 HTVIASYLAEAGFDAATAVLDEPEHGLTDEVLDRCDVLVWWGHIAHDEVKDEVVERVHRRVLE 96 (252)
T ss_dssp HHHHHHHHHHTTCEEEEEESSSGGGGCCHHHHHTCSEEEEECSSCGGGSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhCCcEEEEEeccCccccCCHhHHhcCCEEEEecCCCCCcCCHHHHHHHHHHHHc
Confidence 34455544 4899999877554 3345688999999876555432233344556666643
No 68
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=85.81 E-value=0.94 Score=31.68 Aligned_cols=57 Identities=4% Similarity=-0.061 Sum_probs=36.9
Q ss_pred HHHHHHHH-hCCCceEEeeCCCC--CcccccccCeEEEEeccCCCCCCCCcHHHHHHHHhh
Q psy8996 23 TTESEVHY-ANNYTTEVLRMDEY--DMSSIEHEALILVVASTFGNGDPPENGQEFAQNLHA 80 (95)
Q Consensus 23 A~~l~~~~-~~g~~~~v~~l~~~--~~~~l~~~~~vi~v~ST~G~Ge~Pdn~~~F~~~L~~ 80 (95)
|..|.+++ +.|++|++++.++. +.++|.++++||+.- +...-=.|+..+.+.+|.++
T Consensus 19 a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~~yDvIIl~d-~~~~~l~~~~~~~L~~yV~~ 78 (259)
T 3rht_A 19 AGYLAGLMTSWQWEFDYIPSHVGLDVGELLAKQDLVILSD-YPAERMTAQAIDQLVTMVKA 78 (259)
T ss_dssp HHHHHHHHHHTTCCCEEECTTSCBCSSHHHHTCSEEEEES-CCGGGBCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCceEEEecccccccChhHHhcCCEEEEcC-CccccCCHHHHHHHHHHHHh
Confidence 44555543 47999999988876 457889999988863 22112234455666666653
No 69
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=84.97 E-value=4.1 Score=24.66 Aligned_cols=48 Identities=4% Similarity=-0.124 Sum_probs=33.5
Q ss_pred cEEEeCCCchHHHHHHHHHH-HHhCCCceEE--eeCCCCCcccccccCeEEE
Q psy8996 9 PAFSISEVHYANNYTTESEV-HYANNYTTEV--LRMDEYDMSSIEHEALILV 57 (95)
Q Consensus 9 ~~~ygS~tG~ae~~A~~l~~-~~~~g~~~~v--~~l~~~~~~~l~~~~~vi~ 57 (95)
-++.-+...+|..+++++.+ +.++|+++++ .+..+++ +.+.++|++++
T Consensus 9 IlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a~~~~~~~-~~~~~~DvvLL 59 (108)
T 3nbm_A 9 VLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHY-DIMGVYDLIIL 59 (108)
T ss_dssp EEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEEEETTSCT-TTGGGCSEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEcchHHHH-hhccCCCEEEE
Confidence 44555667889999999987 4568998888 4455543 34567787766
No 70
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=83.38 E-value=3.9 Score=25.83 Aligned_cols=68 Identities=10% Similarity=0.052 Sum_probs=38.7
Q ss_pred cccEEEeCCCchHHHHHHHHHH-HHhCCCceEEeeCCCCCcccccccCeEEEEeccCCCCCCCCcHHHHHHHHhhCC
Q psy8996 7 REPAFSISEVHYANNYTTESEV-HYANNYTTEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFAQNLHALR 82 (95)
Q Consensus 7 ~~~~~ygS~tG~ae~~A~~l~~-~~~~g~~~~v~~l~~~~~~~l~~~~~vi~v~ST~G~Ge~Pdn~~~F~~~L~~~~ 82 (95)
+.-.+||+ |++..+|..++. +.+.|..+.+. .+.....+.+.+++| +.|..| +.| +.....+.+++..
T Consensus 41 ~~I~i~G~--G~S~~~A~~~~~~l~~~g~~~~~~--~~~~~~~~~~~d~vi-~iS~sG--~t~-~~~~~~~~ak~~g 109 (180)
T 1jeo_A 41 KKIFIFGV--GRSGYIGRCFAMRLMHLGFKSYFV--GETTTPSYEKDDLLI-LISGSG--RTE-SVLTVAKKAKNIN 109 (180)
T ss_dssp SSEEEECC--HHHHHHHHHHHHHHHHTTCCEEET--TSTTCCCCCTTCEEE-EEESSS--CCH-HHHHHHHHHHTTC
T ss_pred CEEEEEee--cHHHHHHHHHHHHHHHcCCeEEEe--CCCccccCCCCCEEE-EEeCCC--CcH-HHHHHHHHHHHCC
Confidence 44456664 788889988875 44677766554 343344455555544 455544 333 3455556665543
No 71
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=82.47 E-value=5.3 Score=27.97 Aligned_cols=70 Identities=9% Similarity=0.109 Sum_probs=40.0
Q ss_pred cccEEEeCCCchHHHHHHHHHHHH-hCC-CceEEeeC-------CCCCcccccccCeEEEEeccCCCCCCCC-cHHHHHH
Q psy8996 7 REPAFSISEVHYANNYTTESEVHY-ANN-YTTEVLRM-------DEYDMSSIEHEALILVVASTFGNGDPPE-NGQEFAQ 76 (95)
Q Consensus 7 ~~~~~ygS~tG~ae~~A~~l~~~~-~~g-~~~~v~~l-------~~~~~~~l~~~~~vi~v~ST~G~Ge~Pd-n~~~F~~ 76 (95)
++-+|.|...-.-+..+..|++++ +.| |.|++..- +.++ +.|.++++||+ ++.| +..++ .-..|.+
T Consensus 6 kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~-~~L~~~D~vV~--~~~~-~~l~~~~~~~l~~ 81 (281)
T 4e5v_A 6 KTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFV-LDFSPYQLVVL--DYNG-DSWPEETNRRFLE 81 (281)
T ss_dssp EEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCC-CCCTTCSEEEE--CCCS-SCCCHHHHHHHHH
T ss_pred EEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHh-hhhhcCCEEEE--eCCC-CcCCHHHHHHHHH
Confidence 444454433333456666777755 467 99888753 3444 46889998884 4443 34443 3445555
Q ss_pred HHhh
Q psy8996 77 NLHA 80 (95)
Q Consensus 77 ~L~~ 80 (95)
++++
T Consensus 82 yV~~ 85 (281)
T 4e5v_A 82 YVQN 85 (281)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 5543
No 72
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=78.65 E-value=6.1 Score=25.66 Aligned_cols=67 Identities=15% Similarity=0.085 Sum_probs=37.9
Q ss_pred cccEEEeCCCchHHHHHHHHHH-HHhCCCceEEeeCCCCCcccccccCeEEEEeccCCCCCCCCcHHHHHHHHhhC
Q psy8996 7 REPAFSISEVHYANNYTTESEV-HYANNYTTEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFAQNLHAL 81 (95)
Q Consensus 7 ~~~~~ygS~tG~ae~~A~~l~~-~~~~g~~~~v~~l~~~~~~~l~~~~~vi~v~ST~G~Ge~Pdn~~~F~~~L~~~ 81 (95)
+.-.+|| .|++..+|+.++. +.+.|..+.+. .+.....+.+.++ +++.|..| +.|+ .....+.+++.
T Consensus 48 ~~I~i~G--~G~S~~~A~~~~~~l~~~g~~~~~~--~~~~~~~~~~~Dv-vI~iS~SG--~t~~-~i~~~~~ak~~ 115 (200)
T 1vim_A 48 RSIFVIG--AGRSGYIAKAFAMRLMHLGYTVYVV--GETVTPRITDQDV-LVGISGSG--ETTS-VVNISKKAKDI 115 (200)
T ss_dssp SCEEEEC--SHHHHHHHHHHHHHHHHTTCCEEET--TSTTCCCCCTTCE-EEEECSSS--CCHH-HHHHHHHHHHH
T ss_pred CEEEEEE--ecHHHHHHHHHHHHHHhcCCeEEEe--CCccccCCCCCCE-EEEEeCCC--CcHH-HHHHHHHHHHC
Confidence 4455666 4788889998875 55678766554 3433334555554 44455544 3333 44455555543
No 73
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=78.39 E-value=6.5 Score=24.89 Aligned_cols=67 Identities=7% Similarity=0.074 Sum_probs=38.0
Q ss_pred cccEEEeCCCchHHHHHHHHHH-HHhCCCceEEeeCCCCCcccccccCeEEEEeccCCCCCCCCcHHHHHHHHhhC
Q psy8996 7 REPAFSISEVHYANNYTTESEV-HYANNYTTEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFAQNLHAL 81 (95)
Q Consensus 7 ~~~~~ygS~tG~ae~~A~~l~~-~~~~g~~~~v~~l~~~~~~~l~~~~~vi~v~ST~G~Ge~Pdn~~~F~~~L~~~ 81 (95)
+.-.+||. |++..+|..++. +.+.|+.+.+. .+.....+.+.+ ++++.|..|. . .+.....+.+++.
T Consensus 38 ~~I~i~G~--G~S~~~A~~~~~~l~~~g~~~~~~--~~~~~~~~~~~d-~vI~iS~sG~--t-~~~~~~~~~ak~~ 105 (186)
T 1m3s_A 38 HQIFTAGA--GRSGLMAKSFAMRLMHMGFNAHIV--GEILTPPLAEGD-LVIIGSGSGE--T-KSLIHTAAKAKSL 105 (186)
T ss_dssp SCEEEECS--HHHHHHHHHHHHHHHHTTCCEEET--TSTTCCCCCTTC-EEEEECSSSC--C-HHHHHHHHHHHHT
T ss_pred CeEEEEec--CHHHHHHHHHHHHHHhcCCeEEEe--CcccccCCCCCC-EEEEEcCCCC--c-HHHHHHHHHHHHC
Confidence 33455664 778888888865 55677766554 343334444555 4555555543 3 3344555555554
No 74
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=78.06 E-value=2.3 Score=27.78 Aligned_cols=52 Identities=13% Similarity=0.116 Sum_probs=34.1
Q ss_pred cccEE-EeCCCchHHHHHHHHHHHHhCCCceEEeeCCCCCcccccccCeEEEEeccCCCCCCCCcH
Q psy8996 7 REPAF-SISEVHYANNYTTESEVHYANNYTTEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENG 71 (95)
Q Consensus 7 ~~~~~-ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~~~~l~~~~~vi~v~ST~G~Ge~Pdn~ 71 (95)
++.|+ ||+ ||...+++.|++ .|.++.+.. +++++.+.+.+|+ + |-|++.+..
T Consensus 4 ~I~iiD~g~--~n~~si~~al~~---~G~~~~v~~----~~~~l~~~D~lil--P--G~g~~~~~~ 56 (211)
T 4gud_A 4 NVVIIDTGC--ANISSVKFAIER---LGYAVTISR----DPQVVLAADKLFL--P--GVGTASEAM 56 (211)
T ss_dssp CEEEECCCC--TTHHHHHHHHHH---TTCCEEEEC----CHHHHHHCSEEEE--C--CCSCHHHHH
T ss_pred EEEEEECCC--ChHHHHHHHHHH---CCCEEEEEC----CHHHHhCCCEEEE--C--CCCCHHHHH
Confidence 44444 554 688888877754 488887753 4678888887766 2 777665543
No 75
>3qyf_A Crispr-associated protein; helix-turn-helix, antiviral protein, viral resistance, nucle binding domain; 1.90A {Sulfolobus solfataricus}
Probab=74.97 E-value=4.6 Score=29.28 Aligned_cols=37 Identities=3% Similarity=-0.069 Sum_probs=30.7
Q ss_pred cEEEeCCCchHHHHHHHHHHH-HhCCCceEEeeCCCCC
Q psy8996 9 PAFSISEVHYANNYTTESEVH-YANNYTTEVLRMDEYD 45 (95)
Q Consensus 9 ~~~ygS~tG~ae~~A~~l~~~-~~~g~~~~v~~l~~~~ 45 (95)
-+||.|.|...+..|+.|.+. .++|+.+.+..+..+.
T Consensus 95 v~Ll~SDT~~G~l~AeiLke~l~~~G~~v~~~~V~gL~ 132 (324)
T 3qyf_A 95 VFLYSTNTSNSQLAGEVIRDYLIEEGIRSELVTVKTIS 132 (324)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEECCCC
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHcCCeeEEEEcCCCC
Confidence 369999999999999999884 4689888887777665
No 76
>1vkr_A Mannitol-specific PTS system enzyme iiabc compone; phosphotransferase, transferase, kinase, sugar transport; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1vrv_A* 2few_B*
Probab=72.58 E-value=9.1 Score=23.56 Aligned_cols=39 Identities=3% Similarity=-0.106 Sum_probs=27.7
Q ss_pred ccccEEEeCCCchHHHHHHHHHHHH-hCCC-ceEE--eeCCCC
Q psy8996 6 KREPAFSISEVHYANNYTTESEVHY-ANNY-TTEV--LRMDEY 44 (95)
Q Consensus 6 ~~~~~~ygS~tG~ae~~A~~l~~~~-~~g~-~~~v--~~l~~~ 44 (95)
+++-++=++-.|++..++.+|.+.+ ..|+ ++.+ .++.++
T Consensus 14 kkIlvVC~sGmgTS~ml~~klkk~~~e~gi~~~~V~~~~i~e~ 56 (125)
T 1vkr_A 14 RKIIVACDAGMGSSAMGAGVLRKKIQDAGLSQISVTNSAINNL 56 (125)
T ss_dssp CEEEECCSSSSHHHHHHHHHHHHHHHHTTCTTSEEEECCTTCC
T ss_pred cEEEEECCCcHHHHHHHHHHHHHHHHHCCCceEEEEEeeHHHC
Confidence 3455666889999999999998865 5787 5444 355554
No 77
>3eeq_A Putative cobalamin biosynthesis protein G homolog; structural genomics, unknown function, PSI-2, protein structure initiative; 2.30A {Sulfolobus solfataricus} SCOP: c.151.1.1 c.152.1.1
Probab=71.96 E-value=5.5 Score=28.81 Aligned_cols=53 Identities=11% Similarity=-0.120 Sum_probs=33.0
Q ss_pred cEEEeCCCchHHHHHHHHHHHHh-CCCceEEe-eCCCCCcccccccCeEEEEecc
Q psy8996 9 PAFSISEVHYANNYTTESEVHYA-NNYTTEVL-RMDEYDMSSIEHEALILVVAST 61 (95)
Q Consensus 9 ~~~ygS~tG~ae~~A~~l~~~~~-~g~~~~v~-~l~~~~~~~l~~~~~vi~v~ST 61 (95)
++-.-+-|-+...+|++|++.+. .+..+... ++.+.-.+.+..++.+|||++|
T Consensus 10 ~~Aiia~T~~G~~lA~rl~~~l~~~~~~~~~~~~~~~~~~~~f~~~d~iIfI~A~ 64 (336)
T 3eeq_A 10 GICIISASEDAFSAGETIKEKLKSFEIPVVHYRYKDAEIETIWKCYDAIVFVMAL 64 (336)
T ss_dssp CEEEEECSHHHHHHHHHHHHHHHHTTCCEEEEEGGGCCHHHHTTTCSEEEEESCH
T ss_pred ceEEEEEChHHHHHHHHHHHhcCcCCceEEecCCHHHHHHHHhcCCCeEEEEeCh
Confidence 34344566677789999987654 34443322 3334333456788999999886
No 78
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=70.94 E-value=5.2 Score=24.22 Aligned_cols=35 Identities=6% Similarity=-0.068 Sum_probs=26.5
Q ss_pred cEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCCCCCc
Q psy8996 9 PAFSISEVHYANNYTTESEVHYANNYTTEVLRMDEYDM 46 (95)
Q Consensus 9 ~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~~ 46 (95)
-+-|||..+.+...+++|++ .|.++.++++..+.|
T Consensus 18 iv~~Gs~~~~a~eA~~~L~~---~Gi~v~vi~~r~~~P 52 (118)
T 3ju3_A 18 FVTWGSQKGPILDVIEDLKE---EGISANLLYLKMFSP 52 (118)
T ss_dssp EEEEGGGHHHHHHHHHHHHH---TTCCEEEEEECSSCS
T ss_pred EEEECccHHHHHHHHHHHHH---CCCceEEEEECeEec
Confidence 35589999999998877743 588888888876543
No 79
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=70.85 E-value=4.2 Score=24.25 Aligned_cols=46 Identities=4% Similarity=0.008 Sum_probs=28.9
Q ss_pred ccEEEeCCCchHHHHHHHHHHHH-hCCCceEE--eeCCCCCcccccccCeE
Q psy8996 8 EPAFSISEVHYANNYTTESEVHY-ANNYTTEV--LRMDEYDMSSIEHEALI 55 (95)
Q Consensus 8 ~~~~ygS~tG~ae~~A~~l~~~~-~~g~~~~v--~~l~~~~~~~l~~~~~v 55 (95)
+-++=+|-.||+ .++++|.+.+ .+|+++++ .++.++. ..+.++|++
T Consensus 7 IlvvC~~G~~TS-ll~~kl~~~~~~~gi~~~i~~~~~~~~~-~~~~~~D~I 55 (109)
T 2l2q_A 7 ILLVCGAGMSTS-MLVQRIEKYAKSKNINATIEAIAETRLS-EVVDRFDVV 55 (109)
T ss_dssp EEEESSSSCSSC-HHHHHHHHHHHHHTCSEEEEEECSTTHH-HHTTTCSEE
T ss_pred EEEECCChHhHH-HHHHHHHHHHHHCCCCeEEEEecHHHHH-hhcCCCCEE
Confidence 455567888999 9999998755 57876544 4444432 124455633
No 80
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=70.58 E-value=7.8 Score=23.74 Aligned_cols=57 Identities=12% Similarity=0.110 Sum_probs=37.4
Q ss_pred ccccEEEeCCCchH--HHHHHHHHH-HHhCCCceEEee------CCCCCcccccccCeEEEEeccC
Q psy8996 6 KREPAFSISEVHYA--NNYTTESEV-HYANNYTTEVLR------MDEYDMSSIEHEALILVVASTF 62 (95)
Q Consensus 6 ~~~~~~ygS~tG~a--e~~A~~l~~-~~~~g~~~~v~~------l~~~~~~~l~~~~~vi~v~ST~ 62 (95)
+++-.+-+.-||-| -..|+.|.+ +.++|+++++-. -+.++.+++...+.+|+.+.+-
T Consensus 6 mkIvaVTaCptGiAHTyMAAeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~~Ad~VIiA~d~~ 71 (111)
T 2kyr_A 6 KKLIALCACPMGLAHTFMAAQALEEAAVEAGYEVKIETQGADGIQNRLTAQDIAEATIIIHSVAVT 71 (111)
T ss_dssp CEEEEEEEESSCHHHHHHHHHHHHHHHHHTSSEEEEEEEETTEEESCCCHHHHHHCSEEEEEESSC
T ss_pred ccEEEEEcCCCcHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcCCCCCHHHHHhCCEEEEEeCCC
Confidence 44455566667754 556888876 557898877632 2245566788888888876543
No 81
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=70.26 E-value=7.6 Score=23.15 Aligned_cols=49 Identities=8% Similarity=-0.010 Sum_probs=31.9
Q ss_pred ccccEEEeCCCchHHHHHHHHHHHH-hCCCceEEe--eCCCCCcccccccCeEE
Q psy8996 6 KREPAFSISEVHYANNYTTESEVHY-ANNYTTEVL--RMDEYDMSSIEHEALIL 56 (95)
Q Consensus 6 ~~~~~~ygS~tG~ae~~A~~l~~~~-~~g~~~~v~--~l~~~~~~~l~~~~~vi 56 (95)
+++-++=|+-.+|+ .+++++.+.+ ++|+++++. ++.++. +.+.++|+++
T Consensus 4 kkIll~Cg~G~sTS-~l~~k~~~~~~~~gi~~~i~a~~~~~~~-~~~~~~Dvil 55 (106)
T 1e2b_A 4 KHIYLFSSAGMSTS-LLVSKMRAQAEKYEVPVIIEAFPETLAG-EKGQNADVVL 55 (106)
T ss_dssp EEEEEECSSSTTTH-HHHHHHHHHHHHSCCSEEEEEECSSSTT-HHHHHCSEEE
T ss_pred cEEEEECCCchhHH-HHHHHHHHHHHHCCCCeEEEEecHHHHH-hhccCCCEEE
Confidence 46667778888888 8899998754 689876655 444432 2234566443
No 82
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=69.43 E-value=2.1 Score=25.73 Aligned_cols=48 Identities=6% Similarity=-0.097 Sum_probs=30.4
Q ss_pred ccccEEEeCCCchHHHHHHHHHHHH-hCCCc-eE--EeeCCCCCcccccccCe
Q psy8996 6 KREPAFSISEVHYANNYTTESEVHY-ANNYT-TE--VLRMDEYDMSSIEHEAL 54 (95)
Q Consensus 6 ~~~~~~ygS~tG~ae~~A~~l~~~~-~~g~~-~~--v~~l~~~~~~~l~~~~~ 54 (95)
+++-++-++-.|++..++.+|.+.+ +.|++ +. ..++.+++ ..+.++|+
T Consensus 19 ~kIlvvC~sG~gTS~m~~~kl~~~~~~~gi~~~~i~~~~~~~~~-~~~~~~Dl 70 (110)
T 3czc_A 19 VKVLTACGNGMGSSMVIKMKVENALRQLGVSDIESASCSVGEAK-GLASNYDI 70 (110)
T ss_dssp EEEEEECCCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECHHHHH-HHGGGCSE
T ss_pred cEEEEECCCcHHHHHHHHHHHHHHHHHcCCCeEEEEEeeHHHHh-hccCCCcE
Confidence 4455666888899999999998755 57876 43 34443432 12345563
No 83
>2i9o_A MHB8A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=67.99 E-value=4.6 Score=19.48 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHhCC
Q psy8996 18 YANNYTTESEVHYANN 33 (95)
Q Consensus 18 ~ae~~A~~l~~~~~~g 33 (95)
.+|.+|++|+++..+|
T Consensus 22 aaeayakriaeamakg 37 (37)
T 2i9o_A 22 AAEAYAKRIAEAMAKG 37 (37)
T ss_dssp SHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcC
Confidence 4789999999876543
No 84
>2b4n_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Homo sapiens} PDB: 2l70_A 2l71_A 2obu_A 2qkh_B*
Probab=67.39 E-value=5.4 Score=20.42 Aligned_cols=19 Identities=21% Similarity=0.158 Sum_probs=13.5
Q ss_pred HHHHHHHHhhCCCCCcccc
Q psy8996 71 GQEFAQNLHALRIGEDANN 89 (95)
Q Consensus 71 ~~~F~~~L~~~~~~~~~l~ 89 (95)
+++|.+||......+..+.
T Consensus 19 akdFv~WL~~~k~~~~d~~ 37 (42)
T 2b4n_A 19 QQDFVNWLLAQKGKKNDWK 37 (42)
T ss_dssp HHHHHHHHHHTTCCCCCTT
T ss_pred HHHHHHHHHhCCCcCcchh
Confidence 7899999997655444443
No 85
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=66.52 E-value=14 Score=25.39 Aligned_cols=47 Identities=6% Similarity=-0.162 Sum_probs=28.9
Q ss_pred cccccccEEEeCCCchHHH---HHHHHHH-HHhCCCceEEeeCCCCCcccc
Q psy8996 3 IVEKREPAFSISEVHYANN---YTTESEV-HYANNYTTEVLRMDEYDMSSI 49 (95)
Q Consensus 3 ~~~~~~~~~ygS~tG~ae~---~A~~l~~-~~~~g~~~~v~~l~~~~~~~l 49 (95)
...+++.+++|..+.--+- =|+.+.+ +.+.|+++.+++..+.....+
T Consensus 11 ~~~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~~~~~~~l 61 (317)
T 4eg0_A 11 KRFGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLSAL 61 (317)
T ss_dssp GGGCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCTTHH
T ss_pred hhcceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeCCCchHHHh
Confidence 3467899999976652221 2445544 345799988888655433344
No 86
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=66.48 E-value=12 Score=23.39 Aligned_cols=69 Identities=10% Similarity=0.099 Sum_probs=37.3
Q ss_pred ccEEEeCCCchHHHHHHHHHH-HHhCCCceEEeeCCCC---CcccccccCeEEEEeccCCCCCCCCcHHHHHHHHhhCC
Q psy8996 8 EPAFSISEVHYANNYTTESEV-HYANNYTTEVLRMDEY---DMSSIEHEALILVVASTFGNGDPPENGQEFAQNLHALR 82 (95)
Q Consensus 8 ~~~~ygS~tG~ae~~A~~l~~-~~~~g~~~~v~~l~~~---~~~~l~~~~~vi~v~ST~G~Ge~Pdn~~~F~~~L~~~~ 82 (95)
.-.+||+ |++..+|+.++. +.+.|..+....-.+. ....+.+.+ ++++.|..| +.++ .....+.+++..
T Consensus 51 ~I~i~G~--G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d-~vI~iS~sG--~t~~-~~~~~~~ak~~g 123 (183)
T 2xhz_A 51 KVVVMGM--GASGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQD-VVIAISNSG--ESSE-ITALIPVLKRLH 123 (183)
T ss_dssp CEEEEEC--HHHHHHHHHHHHHHHTTTCCEEECCTTHHHHHTSTTCCTTC-EEEEECSSS--CCHH-HHHHHHHHHTTT
T ss_pred eEEEEee--cHHHHHHHHHHHHHHhcCceEEEeCchHHhhhhhccCCCCC-EEEEEeCCC--CCHH-HHHHHHHHHHCC
Confidence 4566674 788889988875 4456776655531111 112234444 455555554 4333 455556665543
No 87
>2l1l_A CAMP-dependent protein kinase inhibitor alpha; nuclear export, PKI NES, CRM1, RANGTP, nuclear protein; NMR {Homo sapiens}
Probab=65.96 E-value=1.9 Score=20.06 Aligned_cols=16 Identities=13% Similarity=-0.153 Sum_probs=14.1
Q ss_pred eCCCchHHHHHHHHHH
Q psy8996 13 ISEVHYANNYTTESEV 28 (95)
Q Consensus 13 gS~tG~ae~~A~~l~~ 28 (95)
||.+|++.++|.+|++
T Consensus 1 ~~a~g~tsdLa~kLae 16 (27)
T 2l1l_A 1 GSASGNLNELALKLAG 16 (27)
T ss_dssp CCCCCCHHHHHHHHTC
T ss_pred CCCCccHHHHHHHHHH
Confidence 6789999999999876
No 88
>2i9n_A MHB4A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=65.48 E-value=3.7 Score=19.35 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHhCC
Q psy8996 18 YANNYTTESEVHYANN 33 (95)
Q Consensus 18 ~ae~~A~~l~~~~~~g 33 (95)
.+|.+|++|+++...|
T Consensus 18 aaeayakriaeamakg 33 (33)
T 2i9n_A 18 AAEAYAKRIAEAMAKG 33 (33)
T ss_dssp STHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhCC
Confidence 4789999999876543
No 89
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=64.64 E-value=29 Score=23.24 Aligned_cols=46 Identities=4% Similarity=-0.065 Sum_probs=29.3
Q ss_pred cccccEEEeCCCchHHH---HHHHHHH-HHhCCCceEEeeCCCCCccccc
Q psy8996 5 EKREPAFSISEVHYANN---YTTESEV-HYANNYTTEVLRMDEYDMSSIE 50 (95)
Q Consensus 5 ~~~~~~~ygS~tG~ae~---~A~~l~~-~~~~g~~~~v~~l~~~~~~~l~ 50 (95)
++++.+++|.++---+. .+..+.+ +.+.|+++.+++.++.....+.
T Consensus 2 ~~~i~il~gg~s~e~~~s~~~~~~l~~al~~~G~~v~~~~~~~~~~~~~~ 51 (306)
T 1iow_A 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLK 51 (306)
T ss_dssp CCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCGGGTT
T ss_pred CcEEEEEeCCCCccceEcHHhHHHHHHHHHHCCCeEEEEecCchHHHHhh
Confidence 36788999876542221 4455544 4568999998888865544443
No 90
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=64.51 E-value=27 Score=22.92 Aligned_cols=69 Identities=16% Similarity=0.141 Sum_probs=39.5
Q ss_pred ccccEEEeCCCchHHHHHHHHHH-HHhCCCceEEeeCCCCC---cccccccCeEEEEeccCCCCCCCCcHHHHHHHHhh
Q psy8996 6 KREPAFSISEVHYANNYTTESEV-HYANNYTTEVLRMDEYD---MSSIEHEALILVVASTFGNGDPPENGQEFAQNLHA 80 (95)
Q Consensus 6 ~~~~~~ygS~tG~ae~~A~~l~~-~~~~g~~~~v~~l~~~~---~~~l~~~~~vi~v~ST~G~Ge~Pdn~~~F~~~L~~ 80 (95)
.+.-.|||. |++..+|..++. +.+.|+.+.+..-.+.- ...+.+.+ ++|+.|..|+ ..+.....+.+++
T Consensus 59 a~~I~i~G~--G~S~~~A~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~D-lvI~iS~SG~---t~~~i~~~~~ak~ 131 (220)
T 3etn_A 59 KGKLVTSGM--GKAGQIAMNIATTFCSTGIPSVFLHPSEAQHGDLGILQEND-LLLLISNSGK---TREIVELTQLAHN 131 (220)
T ss_dssp CCCEEEECS--HHHHHHHHHHHHHHHHTTCCEEECCTTGGGBTGGGGCCTTC-EEEEECSSSC---CHHHHHHHHHHHH
T ss_pred CCEEEEEEe--cHHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhhhccCCCCC-EEEEEcCCCC---CHHHHHHHHHHHh
Confidence 344566664 888889998875 55678777665422211 12334445 4555565553 3445555566655
No 91
>3fj1_A Putative phosphosugar isomerase; YP_167080.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.75A {Silicibacter pomeroyi dss-3}
Probab=63.63 E-value=20 Score=25.45 Aligned_cols=52 Identities=8% Similarity=0.045 Sum_probs=33.5
Q ss_pred cccccEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCCCCCcccccc-cCeEEEE
Q psy8996 5 EKREPAFSISEVHYANNYTTESEVHYANNYTTEVLRMDEYDMSSIEH-EALILVV 58 (95)
Q Consensus 5 ~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~~~~l~~-~~~vi~v 58 (95)
.++-.++.-|++|++.+.-+.++.+.++|. .++.+-...-..|.+ .+.+|.+
T Consensus 90 ~~~dlvI~iS~SG~T~e~l~a~~~ak~~Ga--~~iaIT~~~~S~La~~ad~~l~~ 142 (344)
T 3fj1_A 90 LDRALCLAVSQSGKSPDIVAMTRNAGRDGA--LCVALTNDAASPLAGVSAHTIDI 142 (344)
T ss_dssp CTTEEEEEEESSSCCHHHHHHHHHHHHTTC--EEEEEESCTTSHHHHTSSEEEEC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHCCC--cEEEEECCCCChHHHhcCEeeec
Confidence 345567788999999999988888877874 444444333334443 3454443
No 92
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=63.43 E-value=9.8 Score=23.08 Aligned_cols=55 Identities=9% Similarity=0.006 Sum_probs=35.5
Q ss_pred cccEEEeCCCch--HHHHHHHHHH-HHhCCCceEEee------CCCCCcccccccCeEEEEecc
Q psy8996 7 REPAFSISEVHY--ANNYTTESEV-HYANNYTTEVLR------MDEYDMSSIEHEALILVVAST 61 (95)
Q Consensus 7 ~~~~~ygS~tG~--ae~~A~~l~~-~~~~g~~~~v~~------l~~~~~~~l~~~~~vi~v~ST 61 (95)
++-.+-+.-||- |-..|+.|.+ +.+.|+++++-. -+.++.+++...+.+||...+
T Consensus 4 kivaVTaCptGiAhTymAaeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~~Ad~VIiA~d~ 67 (106)
T 2r48_A 4 KLLAITSCPNGIAHTYMAAENLQKAADRLGVSIKVETQGGIGVENKLTEEEIREADAIIIAADR 67 (106)
T ss_dssp EEEEEEECSSCSHHHHHHHHHHHHHHHHHTCEEEEEEEETTEEESCCCHHHHHHCSEEEEEESS
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCccCCCCHHHHHhCCEEEEEeCC
Confidence 344455566664 4566888876 556888776632 224556678888988887654
No 93
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=63.41 E-value=11 Score=22.80 Aligned_cols=53 Identities=6% Similarity=-0.043 Sum_probs=34.0
Q ss_pred ccEEEeCCCc--hHHHHHHHHHH-HHhCCCceEEe--eC----CCCCcccccccCeEEEEec
Q psy8996 8 EPAFSISEVH--YANNYTTESEV-HYANNYTTEVL--RM----DEYDMSSIEHEALILVVAS 60 (95)
Q Consensus 8 ~~~~ygS~tG--~ae~~A~~l~~-~~~~g~~~~v~--~l----~~~~~~~l~~~~~vi~v~S 60 (95)
+-++-+--|| +|-..|+.|++ +.++|+++++. .. +.++.+++...+.+|+.+-
T Consensus 5 ivaVtaCptGiAhTymAAeaLekaA~~~G~~ikVEtqgs~g~~n~Lt~~~I~~AD~VIia~d 66 (106)
T 2m1z_A 5 IIAVTACATGVAHTYMAAQALKKGAKKMGNLIKVETQGATGIENELTEKDVNIGEVVIFAVD 66 (106)
T ss_dssp EEEEEECSSCHHHHHHHHHHHHHHHHHHTCEEEEEEEETTEESSCCCHHHHHHCSEEEEEES
T ss_pred EEEEEECCCcHHHHHHHHHHHHHHHHHCCCEEEEEEecCccccCCCCHHHHhhCCEEEEecc
Confidence 3344444555 45566889976 45678876554 33 4555677888898888754
No 94
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=62.84 E-value=11 Score=24.53 Aligned_cols=52 Identities=8% Similarity=0.050 Sum_probs=33.0
Q ss_pred ccccccEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCCCCCcccccc-cCeEEE
Q psy8996 4 VEKREPAFSISEVHYANNYTTESEVHYANNYTTEVLRMDEYDMSSIEH-EALILV 57 (95)
Q Consensus 4 ~~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~~~~l~~-~~~vi~ 57 (95)
+.++-.++.-|++|++..+-+.+..+.++|..+ +.+.+..-..|.+ .+.+|.
T Consensus 129 ~~~~DvvI~iS~SG~t~~~i~~~~~ak~~G~~v--IaIT~~~~s~La~~aD~~l~ 181 (212)
T 2i2w_A 129 GREGDVLLGISTSGNSANVIKAIAAAREKGMKV--ITLTGKDGGKMAGTADIEIR 181 (212)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHHHTCEE--EEEEETTCGGGTTCSSEEEE
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHCCCeE--EEEECCCCCchHHhCCEEEE
Confidence 456667888899999999888777777777543 3333322234433 344444
No 95
>3lzd_A DPH2; diphthamide biosynthesis, radical SAM enzyme, gene triplicat iron-sulfur cluster, biosynthetic protein; 2.10A {Pyrococcus horikoshii} PDB: 3lzc_A
Probab=61.84 E-value=8.8 Score=28.31 Aligned_cols=48 Identities=6% Similarity=-0.036 Sum_probs=38.4
Q ss_pred ccccEEEeCCCc-hHHHHHHHHHHH-HhCCCceEEeeCCCCCcccccccC
Q psy8996 6 KREPAFSISEVH-YANNYTTESEVH-YANNYTTEVLRMDEYDMSSIEHEA 53 (95)
Q Consensus 6 ~~~~~~ygS~tG-~ae~~A~~l~~~-~~~g~~~~v~~l~~~~~~~l~~~~ 53 (95)
+.+||+-||-+| +...++++|.+. .++|....++-+++.++..|...+
T Consensus 265 ~~~GIIvgTLg~Q~~~~~~~~L~~ll~~~Gkk~y~i~vg~inp~KLanF~ 314 (378)
T 3lzd_A 265 KKFGVIVSIKKGQLRLAEAKRIVKLLKKHGREARLIVMNDVNYHKLEGFP 314 (378)
T ss_dssp CEEEEEEECSTTTCCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHTTSC
T ss_pred CEEEEEEeCCccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhCCC
Confidence 567999999776 445678889874 468999999999999998887665
No 96
>3hba_A Putative phosphosugar isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE CIT; 2.00A {Shewanella denitrificans OS217}
Probab=61.13 E-value=35 Score=24.13 Aligned_cols=52 Identities=6% Similarity=0.058 Sum_probs=32.9
Q ss_pred cccccEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCCCCCcccccc-cCeEEEE
Q psy8996 5 EKREPAFSISEVHYANNYTTESEVHYANNYTTEVLRMDEYDMSSIEH-EALILVV 58 (95)
Q Consensus 5 ~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~~~~l~~-~~~vi~v 58 (95)
.++--++.-|++|++.+.-+.++.+.++|.. ++.+....-..|.+ .+.+|.+
T Consensus 89 ~~~dl~i~iS~SG~T~e~~~a~~~ak~~g~~--~i~IT~~~~S~la~~ad~~l~~ 141 (334)
T 3hba_A 89 LAGGLVIVISQSGRSPDILAQARMAKNAGAF--CVALVNDETAPIKDIVDVVIPL 141 (334)
T ss_dssp CTTCEEEEEESSSCCHHHHHHHHHHHHTTCE--EEEEESCTTSGGGGTSSEEEEC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHcCCc--EEEEeCCCCChHHHhcCEeeee
Confidence 3455677889999999998888888777754 34333332334443 3444443
No 97
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=60.98 E-value=9.8 Score=23.08 Aligned_cols=55 Identities=13% Similarity=0.026 Sum_probs=35.0
Q ss_pred cccEEEeCCCch--HHHHHHHHHH-HHhCCCceEEee------CCCCCcccccccCeEEEEecc
Q psy8996 7 REPAFSISEVHY--ANNYTTESEV-HYANNYTTEVLR------MDEYDMSSIEHEALILVVAST 61 (95)
Q Consensus 7 ~~~~~ygS~tG~--ae~~A~~l~~-~~~~g~~~~v~~------l~~~~~~~l~~~~~vi~v~ST 61 (95)
++-.+-+.-||- |-..|+.|.+ +.+.|+++++-. -+.++.+++...+.+||...+
T Consensus 4 kivaVTaCptGiAhTymAaeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~~Ad~VIiA~d~ 67 (106)
T 2r4q_A 4 KILAVTACPTGIAHTFMAADALKEKAKELGVEIKVETNGSSGIKHKLTAQEIEDAPAIIVAADK 67 (106)
T ss_dssp CEEEEEECSCC--CHHHHHHHHHHHHHHHTCCEEEEEEETTEEESCCCHHHHHHCSCEEEEESS
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCccCCCCHHHHHhCCEEEEEeCC
Confidence 334445556664 5567888976 556888876632 224556678888988887654
No 98
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=60.71 E-value=9.9 Score=24.00 Aligned_cols=54 Identities=11% Similarity=-0.005 Sum_probs=34.1
Q ss_pred ccccccEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCCCCCcccccc-cCeEEEEe
Q psy8996 4 VEKREPAFSISEVHYANNYTTESEVHYANNYTTEVLRMDEYDMSSIEH-EALILVVA 59 (95)
Q Consensus 4 ~~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~~~~l~~-~~~vi~v~ 59 (95)
+.++-.++.-|.+|++..+-+.+..+.++|..+ +.+.+.....|.+ .+.+|.+.
T Consensus 77 ~~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~v--i~IT~~~~s~l~~~ad~~l~~~ 131 (186)
T 1m3s_A 77 LAEGDLVIIGSGSGETKSLIHTAAKAKSLHGIV--AALTINPESSIGKQADLIIRMP 131 (186)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEE--EEEESCTTSHHHHHCSEEEECS
T ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHCCCEE--EEEECCCCCchHHhCCEEEEeC
Confidence 456667888999999999887777777788544 3333332233432 45555443
No 99
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=60.63 E-value=18 Score=23.61 Aligned_cols=33 Identities=9% Similarity=-0.006 Sum_probs=26.1
Q ss_pred ccccccEEEeCCCchHHHHHHHHHHHHhCCCce
Q psy8996 4 VEKREPAFSISEVHYANNYTTESEVHYANNYTT 36 (95)
Q Consensus 4 ~~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~ 36 (95)
+.++=.++.-|.+|++..+-+.+..+.++|..+
T Consensus 112 ~~~~Dvvi~iS~SG~t~~~~~~~~~ak~~g~~v 144 (201)
T 3trj_A 112 GNEDDILLVITTSGDSENILSAVEEAHDLEMKV 144 (201)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEE
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcE
Confidence 355666788899999999988888888888544
No 100
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=60.17 E-value=19 Score=22.64 Aligned_cols=37 Identities=11% Similarity=0.069 Sum_probs=27.2
Q ss_pred ccccccEEEeCCCchHHHHHHHHHHHHhCCCceEEee
Q psy8996 4 VEKREPAFSISEVHYANNYTTESEVHYANNYTTEVLR 40 (95)
Q Consensus 4 ~~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~ 40 (95)
+.++-.++.-|.+|++..+-+.+..+.++|..+-.+.
T Consensus 85 ~~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vi~IT 121 (187)
T 3sho_A 85 LRPTDLMIGVSVWRYLRDTVAALAGAAERGVPTMALT 121 (187)
T ss_dssp CCTTEEEEEECCSSCCHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEe
Confidence 3455567788999999998887777778886544443
No 101
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=58.20 E-value=13 Score=23.53 Aligned_cols=33 Identities=12% Similarity=-0.032 Sum_probs=25.9
Q ss_pred ccccccEEEeCCCchHHHHHHHHHHHHhCCCce
Q psy8996 4 VEKREPAFSISEVHYANNYTTESEVHYANNYTT 36 (95)
Q Consensus 4 ~~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~ 36 (95)
+.++-.++.-|.+|++..+-+.+..+.++|..+
T Consensus 114 ~~~~d~vI~iS~SG~t~~~~~~~~~ak~~g~~v 146 (198)
T 2xbl_A 114 GNEGDVLIGYSTSGKSPNILAAFREAKAKGMTC 146 (198)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEE
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeE
Confidence 456667888999999999887777777788543
No 102
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB: 1h0r_A* 1h0s_A* 2dhq_A 2xb8_A* 2y71_A* 2y76_A* 2y77_A* 3n76_A* 3n7a_A* 3n86_A* 3n87_A* 3n8n_A*
Probab=58.16 E-value=17 Score=23.37 Aligned_cols=76 Identities=14% Similarity=0.115 Sum_probs=40.0
Q ss_pred cccccccEEEeCCCchHHHHHHHHHH-HHhCCCceEEeeCCC-CC-cccc----cccCeEEEEeccCCCCCCCCcHHHHH
Q psy8996 3 IVEKREPAFSISEVHYANNYTTESEV-HYANNYTTEVLRMDE-YD-MSSI----EHEALILVVASTFGNGDPPENGQEFA 75 (95)
Q Consensus 3 ~~~~~~~~~ygS~tG~ae~~A~~l~~-~~~~g~~~~v~~l~~-~~-~~~l----~~~~~vi~v~ST~G~Ge~Pdn~~~F~ 75 (95)
..-+|.|-.||++| =+++-+++.+ +...|+.+++..-+. -. ++.+ .+.+.+|+=- |-..-......
T Consensus 15 lLG~REP~iYG~~t--l~di~~~l~~~a~~~g~~~~~~QSN~EgeLId~Ih~a~~~~dgiiINp-----gA~THtSvAlr 87 (146)
T 1h05_A 15 RLGRREPAVYGGTT--HDELVALIEREAAELGLKAVVRQSDSEAQLLDWIHQAADAAEPVILNA-----GGLTHTSVALR 87 (146)
T ss_dssp GTTTC------CCC--HHHHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHHHHHTCCEEEEC-----GGGGGTCHHHH
T ss_pred ccCCCCCCcCCcCC--HHHHHHHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEECc-----hhhccccHHHH
Confidence 34688999999998 6677777765 556888877775542 00 1111 2345555532 22234456677
Q ss_pred HHHhhCCCCC
Q psy8996 76 QNLHALRIGE 85 (95)
Q Consensus 76 ~~L~~~~~~~ 85 (95)
+.|.....|-
T Consensus 88 DAl~~v~~P~ 97 (146)
T 1h05_A 88 DACAELSAPL 97 (146)
T ss_dssp HHHHTCCSCE
T ss_pred HHHHhCCCCE
Confidence 7777766654
No 103
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=58.12 E-value=18 Score=23.17 Aligned_cols=67 Identities=9% Similarity=0.030 Sum_probs=36.5
Q ss_pred ccEEEeCCCchHHHHHHHHHH-HHhCCCceEEeeCCCC---CcccccccCeEEEEeccCCCCCCCCcHHHHHHHHhh
Q psy8996 8 EPAFSISEVHYANNYTTESEV-HYANNYTTEVLRMDEY---DMSSIEHEALILVVASTFGNGDPPENGQEFAQNLHA 80 (95)
Q Consensus 8 ~~~~ygS~tG~ae~~A~~l~~-~~~~g~~~~v~~l~~~---~~~~l~~~~~vi~v~ST~G~Ge~Pdn~~~F~~~L~~ 80 (95)
.-.|||. |.+..+|..++. +.+.|..+.+..-.+. ....+.+.++ +++.|..|. .+ +.....+.+++
T Consensus 47 ~I~i~G~--G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dv-vI~iS~sG~--t~-~~~~~~~~ak~ 117 (201)
T 3fxa_A 47 KIVVAGC--GTSGVAAKKLVHSFNCIERPAVFLTPSDAVHGTLGVLQKEDI-LILISKGGN--TG-ELLNLIPACKT 117 (201)
T ss_dssp CEEEECC--THHHHHHHHHHHHHHHTTCCEEECCHHHHTTTGGGGCCTTCE-EEEECSSSC--CH-HHHTTHHHHHH
T ss_pred cEEEEEe--cHHHHHHHHHHHHHHhcCCcEEEeCchHHHhhhhhcCCCCCE-EEEEeCCCC--CH-HHHHHHHHHHH
Confidence 4667775 888889988875 5567877665532211 1123444554 555565553 33 23344444444
No 104
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=57.89 E-value=17 Score=23.95 Aligned_cols=53 Identities=8% Similarity=0.081 Sum_probs=34.9
Q ss_pred ccccccEEEeCCCchHHHHHHHHHHHHh--CCCceEEeeCCCCCcccccc-cCeEEEE
Q psy8996 4 VEKREPAFSISEVHYANNYTTESEVHYA--NNYTTEVLRMDEYDMSSIEH-EALILVV 58 (95)
Q Consensus 4 ~~~~~~~~ygS~tG~ae~~A~~l~~~~~--~g~~~~v~~l~~~~~~~l~~-~~~vi~v 58 (95)
+.++-.++.-|.+|++..+-+.+..+.+ +|.. ++.+.+.....|.+ .+.+|.+
T Consensus 104 ~~~~DlvI~iS~SG~t~~~i~~~~~ak~~~~Ga~--vI~IT~~~~s~La~~aD~~l~~ 159 (220)
T 3etn_A 104 LQENDLLLLISNSGKTREIVELTQLAHNLNPGLK--FIVITGNPDSPLASESDVCLST 159 (220)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHHHCTTCE--EEEEESCTTSHHHHHSSEEEEC
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhcCCCCe--EEEEECCCCChhHHhCCEEEEc
Confidence 4567788889999999999888877777 8854 44444332333433 4555543
No 105
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=56.76 E-value=16 Score=23.20 Aligned_cols=53 Identities=11% Similarity=0.195 Sum_probs=33.8
Q ss_pred ccccccEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCCCCCcccccc----cCeEEEE
Q psy8996 4 VEKREPAFSISEVHYANNYTTESEVHYANNYTTEVLRMDEYDMSSIEH----EALILVV 58 (95)
Q Consensus 4 ~~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~~~~l~~----~~~vi~v 58 (95)
..++=.++.-|.+|++..+-+.+..+.++|.. ++.+.+.....+.+ .+.+|.+
T Consensus 107 ~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~--vI~IT~~~~s~la~~~~~ad~~l~~ 163 (196)
T 2yva_A 107 GHAGDVLLAISTRGNSRDIVKAVEAAVTRDMT--IVALTGYDGGELAGLLGPQDVEIRI 163 (196)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHHTTCE--EEEEECTTCHHHHTTCCTTSEEEEC
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCE--EEEEeCCCCchhhhcccCCCEEEEe
Confidence 34555677789999999998888778788854 44444433333433 4655543
No 106
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=56.44 E-value=12 Score=23.91 Aligned_cols=46 Identities=11% Similarity=0.077 Sum_probs=30.7
Q ss_pred ccccccEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCCCCCcccccc
Q psy8996 4 VEKREPAFSISEVHYANNYTTESEVHYANNYTTEVLRMDEYDMSSIEH 51 (95)
Q Consensus 4 ~~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~~~~l~~ 51 (95)
+.++=.++.-|.+|++..+-+.+..+.++|.. ++.+.+..-..|.+
T Consensus 111 ~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~--vI~IT~~~~s~La~ 156 (199)
T 1x92_A 111 GQPGDVLLAISTSGNSANVIQAIQAAHDREML--VVALTGRDGGGMAS 156 (199)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHHTTCE--EEEEECTTCHHHHH
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCE--EEEEECCCCCcHHh
Confidence 45555678889999999998877777788854 44444433334443
No 107
>3sqn_A Conserved domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MGA family; 2.31A {Enterococcus faecalis}
Probab=54.17 E-value=16 Score=27.31 Aligned_cols=57 Identities=9% Similarity=0.068 Sum_probs=37.7
Q ss_pred cccccccEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCCCCCcccccccCeEEEEeccC
Q psy8996 3 IVEKREPAFSISEVHYANNYTTESEVHYANNYTTEVLRMDEYDMSSIEHEALILVVASTF 62 (95)
Q Consensus 3 ~~~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~~~~l~~~~~vi~v~ST~ 62 (95)
..++++-|+-++--|+++.+-.+|.+.+..-.-..+.++-++....+.+.| ||.||.
T Consensus 396 ~~~~~~~vVC~~GigtS~lL~~~L~~~F~~~~~~~~is~~e~~~~~~~~~D---~ViStv 452 (485)
T 3sqn_A 396 AQTMTAYFLFQGEPAWKAFLQQELAAYLGTRVKLQAIEYVELSQLTLNEAD---IIISNF 452 (485)
T ss_dssp CCSEEEEEECCSCHHHHHHHHHHHHHHHCTTEEEEECCTTTCCCCCCCTTC---EEEESS
T ss_pred cccceEEEECCCchhHHHHHHHHHHHhcCCceEeecccHHHHhhccccCCC---EEEEcc
Confidence 456777788889999999999999998854322344455555433333455 345555
No 108
>2aml_A SIS domain protein; 46906266, LMO0035 protein, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=54.14 E-value=33 Score=24.49 Aligned_cols=33 Identities=9% Similarity=0.009 Sum_probs=25.3
Q ss_pred ccccccEEEeCCCchHHHHHHHHHHHHhC-CCce
Q psy8996 4 VEKREPAFSISEVHYANNYTTESEVHYAN-NYTT 36 (95)
Q Consensus 4 ~~~~~~~~ygS~tG~ae~~A~~l~~~~~~-g~~~ 36 (95)
+.++-.++.-|++|++...-+.+..+.++ |..+
T Consensus 95 ~~~~dlvI~iS~SG~T~e~l~a~~~ak~~~Ga~v 128 (373)
T 2aml_A 95 SSHLDLVIGISQSGQSTSTISALERVKKEASVPV 128 (373)
T ss_dssp CTTCCEEEEECSSSCBHHHHHHHHHHHHHCCCCE
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHhCCCcE
Confidence 34555678889999999998888777777 7543
No 109
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=54.03 E-value=19 Score=22.52 Aligned_cols=54 Identities=13% Similarity=-0.026 Sum_probs=34.1
Q ss_pred ccccccEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCCCCCcccccc-cCeEEEEec
Q psy8996 4 VEKREPAFSISEVHYANNYTTESEVHYANNYTTEVLRMDEYDMSSIEH-EALILVVAS 60 (95)
Q Consensus 4 ~~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~~~~l~~-~~~vi~v~S 60 (95)
+.++-.++.-|.+|++..+-+.+..+.++|..+-.+. +..-. |.+ .+.++.+.+
T Consensus 80 ~~~~d~vi~iS~sG~t~~~~~~~~~ak~~g~~vi~IT--~~~~s-l~~~ad~~l~~~~ 134 (180)
T 1jeo_A 80 YEKDDLLILISGSGRTESVLTVAKKAKNINNNIIAIV--CECGN-VVEFADLTIPLEV 134 (180)
T ss_dssp CCTTCEEEEEESSSCCHHHHHHHHHHHTTCSCEEEEE--SSCCG-GGGGCSEEEECCC
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEe--CCCCh-HHHhCCEEEEeCC
Confidence 4566678888999999998877777777786543333 32223 544 345554443
No 110
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*
Probab=54.00 E-value=16 Score=25.22 Aligned_cols=40 Identities=5% Similarity=-0.011 Sum_probs=25.2
Q ss_pred cccccEEEeCCCchHHHH----HHHHHHHHhCCCceEEeeCCCC
Q psy8996 5 EKREPAFSISEVHYANNY----TTESEVHYANNYTTEVLRMDEY 44 (95)
Q Consensus 5 ~~~~~~~ygS~tG~ae~~----A~~l~~~~~~g~~~~v~~l~~~ 44 (95)
.++.|++|+++.+---.+ +++.++.+..+++++++++..-
T Consensus 118 a~~~~vv~a~N~siGvn~~~~l~~~aa~~~~~~~dieiiE~Hh~ 161 (273)
T 1dih_A 118 AADIAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHR 161 (273)
T ss_dssp TTTSCEEECSCCCHHHHHHHHHHHHHHHHHTTTSEEEEEEEECT
T ss_pred cCCCCEEEEecCcHHHHHHHHHHHHHHHhcCCCCCEEEEEeecC
Confidence 356788998876664333 4444444445678888877654
No 111
>1bba_A Bovine pancreatic polypeptide; pancreatic hormone; NMR {Bos taurus} SCOP: j.6.1.1 PDB: 1ljv_A 1tz5_A 1v1d_A
Probab=53.61 E-value=9.6 Score=18.78 Aligned_cols=18 Identities=28% Similarity=0.577 Sum_probs=15.8
Q ss_pred CCCCCCCcHHHHHHHHhh
Q psy8996 63 GNGDPPENGQEFAQNLHA 80 (95)
Q Consensus 63 G~Ge~Pdn~~~F~~~L~~ 80 (95)
|++.+|+.+..++..|+.
T Consensus 9 G~dA~pEela~Y~~~Lr~ 26 (36)
T 1bba_A 9 GDNATPEQMAQYAAELRR 26 (36)
T ss_dssp SSCSSTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 788899999999998864
No 112
>3tbf_A Glucosamine--fructose-6-phosphate aminotransferas [isomerizing]; structural genomics; 2.28A {Francisella tularensis subsp}
Probab=53.46 E-value=20 Score=25.80 Aligned_cols=53 Identities=11% Similarity=0.006 Sum_probs=34.3
Q ss_pred cccccEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCCCCCcccccc-cCeEEEE
Q psy8996 5 EKREPAFSISEVHYANNYTTESEVHYANNYTTEVLRMDEYDMSSIEH-EALILVV 58 (95)
Q Consensus 5 ~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~~~~l~~-~~~vi~v 58 (95)
.++-.++.-|++|+|.+.-+.+..+.++| .+.++.+....-..|.+ .+.+|.+
T Consensus 100 ~~~dlvI~iS~SG~T~e~l~al~~ak~~G-~a~~iaIT~~~~S~La~~aD~~l~~ 153 (372)
T 3tbf_A 100 VDGSLFVSISQSGETADTLESLRKSKKQN-YVGSMCICNVPNSSLVRESDIAFMT 153 (372)
T ss_dssp CTTEEEEEEESSSCCHHHHHHHHHHTTTT-EEEEEEEESSSSSHHHHHSSEEEEC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHcC-CceEEEEcCCCCChHHHhCCEeeee
Confidence 45556778899999999988888777777 35555555443344543 3444443
No 113
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=51.05 E-value=44 Score=21.05 Aligned_cols=70 Identities=9% Similarity=-0.048 Sum_probs=37.2
Q ss_pred cccEEEeCCCchHHHHHHHHHH-HH------hCCCceEEeeC---------CCCCcc---------cccccCeEEEEecc
Q psy8996 7 REPAFSISEVHYANNYTTESEV-HY------ANNYTTEVLRM---------DEYDMS---------SIEHEALILVVAST 61 (95)
Q Consensus 7 ~~~~~ygS~tG~ae~~A~~l~~-~~------~~g~~~~v~~l---------~~~~~~---------~l~~~~~vi~v~ST 61 (95)
+.-.+||. |++..+|..++. +. +.|+.+....- ++.... .+.+.+ ++++.|.
T Consensus 42 ~~I~i~G~--G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~~~~~~~D-vvI~iS~ 118 (196)
T 2yva_A 42 NKILCCGN--GTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALGHAGD-VLLAIST 118 (196)
T ss_dssp CCEEEEES--THHHHHHHHHHHHHHTCSSSCCCCCCEEESSCCHHHHHHHTTSTTGGGHHHHHHHHHCCTTC-EEEEECS
T ss_pred CEEEEEeC--chhhHHHHHHHHHHhccccccCCCCceEeecCchHHHHHHhcCCCHHHHHHHHHHhcCCCCC-EEEEEeC
Confidence 44556665 778888988865 44 45655544421 133321 233444 5556666
Q ss_pred CCCCCCCCcHHHHHHHHhhCC
Q psy8996 62 FGNGDPPENGQEFAQNLHALR 82 (95)
Q Consensus 62 ~G~Ge~Pdn~~~F~~~L~~~~ 82 (95)
.|. ..+.....+.+++..
T Consensus 119 SG~---t~~~i~~~~~ak~~g 136 (196)
T 2yva_A 119 RGN---SRDIVKAVEAAVTRD 136 (196)
T ss_dssp SSC---CHHHHHHHHHHHHTT
T ss_pred CCC---CHHHHHHHHHHHHCC
Confidence 654 334455556665543
No 114
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=50.90 E-value=15 Score=22.97 Aligned_cols=54 Identities=17% Similarity=0.074 Sum_probs=34.1
Q ss_pred ccccccEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCCCCCcccccc-cCeEEEEe
Q psy8996 4 VEKREPAFSISEVHYANNYTTESEVHYANNYTTEVLRMDEYDMSSIEH-EALILVVA 59 (95)
Q Consensus 4 ~~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~~~~l~~-~~~vi~v~ 59 (95)
+.++-.++.-|.+|++..+-+.+..+.++|..+-.+.-.. -..|.+ .+.+|.+.
T Consensus 94 ~~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~--~s~la~~ad~~l~~~ 148 (183)
T 2xhz_A 94 VTPQDVVIAISNSGESSEITALIPVLKRLHVPLICITGRP--ESSMARAADVHLCVK 148 (183)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHTTTCCEEEEESCT--TSHHHHHSSEEEECC
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEECCC--CChhHHhCCEEEEeC
Confidence 3456567888999999999887777777886544443322 233433 45555444
No 115
>2zfz_A Arginine repressor; DNA binding protein, core, oligomeriza domain, alpha/beta topology, structural genomics; HET: ARG; 1.85A {Mycobacterium tuberculosis} PDB: 3bue_A 3cag_A*
Probab=50.74 E-value=31 Score=19.33 Aligned_cols=53 Identities=19% Similarity=0.162 Sum_probs=35.5
Q ss_pred EEeCCCchHHHHHHHHHHHHhCCCceEEeeCCCCCcccccccCeEEEEeccCCCCCCCCcHHHHHHHHhh
Q psy8996 11 FSISEVHYANNYTTESEVHYANNYTTEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFAQNLHA 80 (95)
Q Consensus 11 ~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~~~~l~~~~~vi~v~ST~G~Ge~Pdn~~~F~~~L~~ 80 (95)
+-=|.-|+|+.+|..|-+..... + ...+.+.+.+++++-+- +.++.+.+.|.+
T Consensus 25 VikT~PG~A~~vA~~iD~~~~~e----I-------lGTIAGDDTIlvi~r~~------~~a~~l~~~l~~ 77 (79)
T 2zfz_A 25 VLRTPPGAAHYLASAIDRAALPQ----V-------VGTIAGDDTILVVAREP------TTGAQLAGMFEN 77 (79)
T ss_dssp EEECSTTCHHHHHHHHHHHCCTT----E-------EEEEECSSEEEEEECTT------CCHHHHHHHHHH
T ss_pred EEEeCCCcHHHHHHHHHhCCCCC----e-------EEEEecCCEEEEEECCH------HHHHHHHHHHHh
Confidence 33478899999999886642111 1 24556777777777653 678888887764
No 116
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus}
Probab=50.60 E-value=19 Score=23.29 Aligned_cols=76 Identities=9% Similarity=0.062 Sum_probs=46.4
Q ss_pred cccccccEEEeCCCchHHHHHHHHHH-HHhCCCceEEeeCCC-CC-cccc----cc-cCeEEEEeccCCCCCCCCcHHHH
Q psy8996 3 IVEKREPAFSISEVHYANNYTTESEV-HYANNYTTEVLRMDE-YD-MSSI----EH-EALILVVASTFGNGDPPENGQEF 74 (95)
Q Consensus 3 ~~~~~~~~~ygS~tG~ae~~A~~l~~-~~~~g~~~~v~~l~~-~~-~~~l----~~-~~~vi~v~ST~G~Ge~Pdn~~~F 74 (95)
..-+|.|-.||++| =+++-+++.+ +...|+.+++..-+. -. ++.+ .+ .+.+|+=- |-..-.....
T Consensus 12 lLG~REP~iYG~~t--l~di~~~l~~~a~~~g~~v~~~QSN~EgeLId~Ih~a~~~~~dgiIINp-----gA~THtSvAl 84 (149)
T 2uyg_A 12 LLGRREPEVYGRTT--LEELEALCEAWGAELGLGVVFRQTNYEGQLIEWVQQAHQEGFLAIVLNP-----GALTHYSYAL 84 (149)
T ss_dssp GTTTSCSSSSCSCC--HHHHHHHHHHHHHHTTCCEEEEECSCHHHHHHHHHHTTTTTCSEEEEEC-----GGGGGTCHHH
T ss_pred ccCCCCCCcCCcCC--HHHHHHHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhccCCeeEEEEcc-----chhccccHHH
Confidence 34578999999998 6677777765 556888887775552 00 1111 22 45555532 2223455667
Q ss_pred HHHHhhCCCCC
Q psy8996 75 AQNLHALRIGE 85 (95)
Q Consensus 75 ~~~L~~~~~~~ 85 (95)
.+.|.....|-
T Consensus 85 rDAl~~v~~P~ 95 (149)
T 2uyg_A 85 LDAIRAQPLPV 95 (149)
T ss_dssp HHHHHTSCSCE
T ss_pred HHHHHhCCCCE
Confidence 77787766664
No 117
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=49.89 E-value=15 Score=23.08 Aligned_cols=33 Identities=12% Similarity=-0.007 Sum_probs=25.4
Q ss_pred ccccccEEEeCCCchHHHHHHHHHHHHhCCCce
Q psy8996 4 VEKREPAFSISEVHYANNYTTESEVHYANNYTT 36 (95)
Q Consensus 4 ~~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~ 36 (95)
+.++=.++.-|.+|++..+-+.+..+.++|..+
T Consensus 108 ~~~~Dvvi~iS~sG~t~~~~~~~~~ak~~g~~v 140 (188)
T 1tk9_A 108 GNEKDVLIGISTSGKSPNVLEALKKAKELNMLC 140 (188)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEE
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEE
Confidence 355656788899999999988777777788643
No 118
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=47.05 E-value=10 Score=24.35 Aligned_cols=55 Identities=15% Similarity=0.111 Sum_probs=34.4
Q ss_pred ccccccEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCCCCCcccccc-cCeEEEEec
Q psy8996 4 VEKREPAFSISEVHYANNYTTESEVHYANNYTTEVLRMDEYDMSSIEH-EALILVVAS 60 (95)
Q Consensus 4 ~~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~~~~l~~-~~~vi~v~S 60 (95)
+.++-.++.-|.+|++..+-+.+..+.++|.. ++.+.+..-..|.+ .+.+|.+.+
T Consensus 90 ~~~~dvvI~iS~sG~t~~~~~~~~~ak~~g~~--vi~IT~~~~s~l~~~ad~~l~~~~ 145 (201)
T 3fxa_A 90 LQKEDILILISKGGNTGELLNLIPACKTKGST--LIGVTENPDSVIAKEADIFFPVSV 145 (201)
T ss_dssp CCTTCEEEEECSSSCCHHHHTTHHHHHHHTCE--EEEEESCTTSHHHHHCSEEEECCC
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCe--EEEEECCCCChhHHhCCEEEEcCC
Confidence 45666788889999999988777777777754 44443332233433 455554433
No 119
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=45.40 E-value=44 Score=25.23 Aligned_cols=46 Identities=20% Similarity=0.128 Sum_probs=28.9
Q ss_pred ccccEE-EeCCCchHHHHHHHHHHHHhCCCceEEeeCCCCCccccccc--CeEEE
Q psy8996 6 KREPAF-SISEVHYANNYTTESEVHYANNYTTEVLRMDEYDMSSIEHE--ALILV 57 (95)
Q Consensus 6 ~~~~~~-ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~~~~l~~~--~~vi~ 57 (95)
.++.|+ |||| +++.+|++|+++ |..+.+++-+ .+++++... +.+|+
T Consensus 11 ~~I~IlD~g~~--~~~~i~r~lr~~---Gv~~~i~p~~-~~~~~i~~~~~dgIIL 59 (527)
T 3tqi_A 11 HRILILDFGSQ--YAQLIARRVREI---GVYCELMPCD-IDEETIRDFNPHGIIL 59 (527)
T ss_dssp SEEEEEECSCT--THHHHHHHHHHH---TCEEEEEETT-CCSSSSTTTCCSEEEE
T ss_pred CeEEEEECCCc--cHHHHHHHHHHC---CCeEEEEECC-CCHHHHHhcCCCEEEE
Confidence 455555 6765 678999988775 7777777543 334555443 55444
No 120
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1
Probab=44.75 E-value=18 Score=23.48 Aligned_cols=38 Identities=18% Similarity=0.299 Sum_probs=28.2
Q ss_pred cccccccEEEeCCCchHHHHHHHHHH-HHhCCCceEEeeCC
Q psy8996 3 IVEKREPAFSISEVHYANNYTTESEV-HYANNYTTEVLRMD 42 (95)
Q Consensus 3 ~~~~~~~~~ygS~tG~ae~~A~~l~~-~~~~g~~~~v~~l~ 42 (95)
..-+|.|-+||++| =+++-+.+.+ +...|+.+++..-+
T Consensus 14 lLG~REP~iYG~~T--l~di~~~l~~~a~~~g~~l~~~QSN 52 (154)
T 1uqr_A 14 MLGKREPHIYGSQT--LSDIEQHLQQSAQAQGYELDYFQAN 52 (154)
T ss_dssp GTTCSSGGGTTCCC--HHHHHHHHHHHHHHTTCEEEEEECS
T ss_pred ccCCCCCCcCCCCC--HHHHHHHHHHHHHHCCCEEEEEeeC
Confidence 34578999999998 6677777765 55688887776554
No 121
>3g68_A Putative phosphosugar isomerase; SIS domain, double-SIS DOMA protein, structural genomics, joint center for structural G JCSG; HET: MSE CIT; 1.80A {Clostridium difficile}
Probab=44.14 E-value=49 Score=23.46 Aligned_cols=49 Identities=10% Similarity=0.096 Sum_probs=31.5
Q ss_pred ccccEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCCCCCcccccc-cCeEE
Q psy8996 6 KREPAFSISEVHYANNYTTESEVHYANNYTTEVLRMDEYDMSSIEH-EALIL 56 (95)
Q Consensus 6 ~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~~~~l~~-~~~vi 56 (95)
++-.++.-|++|+|.+.-+.++.+.++|. .++.+....-..|.+ .+.+|
T Consensus 82 ~~dlvI~iS~SG~T~e~l~a~~~ak~~ga--~~iaIT~~~~S~La~~aD~~l 131 (352)
T 3g68_A 82 ENTLVVGVSQGGSSYSTYNAMKLAEDKGC--KIASMAGCKNALIDEISDYIL 131 (352)
T ss_dssp TTEEEEEEESSSCCHHHHHHHHHHHHTTC--EEEEEESSTTCGGGGGCSEEC
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHCCC--CEEEEeCCCCChHHHhCCEEE
Confidence 45467778999999999888888877874 444444333334443 34443
No 122
>1tzb_A Glucose-6-phosphate isomerase, conjectural; enzyme, crenarchaeon, hyperthermophIle, PGI family; 1.16A {Pyrobaculum aerophilum} SCOP: c.80.1.1 PDB: 1tzc_A* 1x9h_A* 1x9i_A*
Probab=43.75 E-value=74 Score=21.85 Aligned_cols=63 Identities=10% Similarity=-0.125 Sum_probs=35.3
Q ss_pred cEEEeCCCchHHHHHHHHHHHHh--C-CCceEEeeCCCCCcccccccCeEEEEeccCCCCCCCCcHHHHHHHHhhC
Q psy8996 9 PAFSISEVHYANNYTTESEVHYA--N-NYTTEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFAQNLHAL 81 (95)
Q Consensus 9 ~~~ygS~tG~ae~~A~~l~~~~~--~-g~~~~v~~l~~~~~~~l~~~~~vi~v~ST~G~Ge~Pdn~~~F~~~L~~~ 81 (95)
-+|+| .|++..+|..++..+. . |..+.+..-.++ + ..+-++++.|-. |+-|+. ....+.+++.
T Consensus 40 I~i~G--~G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~~----~-~~~dlvI~iS~S--G~T~e~-~~a~~~ak~~ 105 (302)
T 1tzb_A 40 LYISG--MGGSGVVADLIRDFSLTWNWEVEVIAVKDYFL----K-ARDGLLIAVSYS--GNTIET-LYTVEYAKRR 105 (302)
T ss_dssp EEEEC--CHHHHHHHHHHHHHHHHTTCSSEEEEECSSCC----C-CSSSEEEEECSS--SCCHHH-HHHHHHHHHT
T ss_pred EEEEE--ecHHHHHHHHHHHHHHhhcCCceEEEeCCcCC----C-CCCCEEEEEeCC--CCCHHH-HHHHHHHHHC
Confidence 34445 4899999988876553 3 666666643333 2 334455555555 455553 3444555554
No 123
>1f8p_A Neuropeptide Y (PNPY); helix; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ron_A 1fvn_A* 1icy_A 1tz4_A 2oon_A
Probab=42.84 E-value=23 Score=17.53 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=15.4
Q ss_pred CCCCCCCcHHHHHHHHhh
Q psy8996 63 GNGDPPENGQEFAQNLHA 80 (95)
Q Consensus 63 G~Ge~Pdn~~~F~~~L~~ 80 (95)
|+..+|+....++..|+.
T Consensus 9 g~~a~pEela~Y~~~Lr~ 26 (37)
T 1f8p_A 9 GEDAPAEDLARYYSALRH 26 (37)
T ss_dssp CSSCTTTTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 778889999999998864
No 124
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=42.80 E-value=20 Score=23.08 Aligned_cols=52 Identities=12% Similarity=0.082 Sum_probs=32.4
Q ss_pred ccccccEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCCCCCcccccc-cCeEEE
Q psy8996 4 VEKREPAFSISEVHYANNYTTESEVHYANNYTTEVLRMDEYDMSSIEH-EALILV 57 (95)
Q Consensus 4 ~~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~~~~l~~-~~~vi~ 57 (95)
+.++-.++.-|.+|++..+-+.+..+.++|..+ +.+.+..-..|.+ .+.+|.
T Consensus 87 ~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~v--I~IT~~~~s~La~~ad~~l~ 139 (200)
T 1vim_A 87 ITDQDVLVGISGSGETTSVVNISKKAKDIGSKL--VAVTGKRDSSLAKMADVVMV 139 (200)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHHHTCEE--EEEESCTTSHHHHHCSEEEE
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeE--EEEECCCCChHHHhCCEEEE
Confidence 345556788899999999987777777777544 4443332233433 454444
No 125
>2a3n_A Putative glucosamine-fructose-6-phosphate aminotr; structural genomics, joint center for structural genomics; HET: MSE; 1.23A {Salmonella typhimurium}
Probab=41.96 E-value=31 Score=24.42 Aligned_cols=32 Identities=13% Similarity=0.059 Sum_probs=25.3
Q ss_pred cccccEEEeCCCchHHHHHHHHHHHHhCCCce
Q psy8996 5 EKREPAFSISEVHYANNYTTESEVHYANNYTT 36 (95)
Q Consensus 5 ~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~ 36 (95)
.++-.++.-|++|++...-+.++.+.++|..+
T Consensus 101 ~~~dlvI~iS~SG~t~e~~~a~~~ak~~Ga~v 132 (355)
T 2a3n_A 101 NKDSVVITLSKSGDTKESVAIAEWCKAQGIRV 132 (355)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeE
Confidence 45667888899999999988887777787543
No 126
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=41.71 E-value=12 Score=17.89 Aligned_cols=12 Identities=17% Similarity=-0.017 Sum_probs=9.5
Q ss_pred cHHHHHHHHhhC
Q psy8996 70 NGQEFAQNLHAL 81 (95)
Q Consensus 70 n~~~F~~~L~~~ 81 (95)
-+++|.+||.+.
T Consensus 10 aakdFv~WL~ng 21 (31)
T 3c5t_B 10 AVRLFIEWLKNG 21 (31)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC
Confidence 378999999853
No 127
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=41.58 E-value=20 Score=24.97 Aligned_cols=61 Identities=10% Similarity=0.054 Sum_probs=36.0
Q ss_pred CccccccccEEEe-----------CCCchHHHHHHHHHHHH-hCCCceEEeeCCCCCccc------------ccccCeEE
Q psy8996 1 MEIVEKREPAFSI-----------SEVHYANNYTTESEVHY-ANNYTTEVLRMDEYDMSS------------IEHEALIL 56 (95)
Q Consensus 1 ~~~~~~~~~~~yg-----------S~tG~ae~~A~~l~~~~-~~g~~~~v~~l~~~~~~~------------l~~~~~vi 56 (95)
|+--++|+.++.+ .-.|+..+ |+.|++.+ ..||+|.+.. +.+..+ ....+.+|
T Consensus 39 m~~~~rg~aLIInN~~F~~~~~l~~R~Gt~~D-~~~L~~~f~~LGF~V~~~~--dlt~~em~~~l~~f~~~dh~~~d~~v 115 (277)
T 4ehd_A 39 MDYPEMGLCIIINNKNFHKSTGMTSRSGTDVD-AANLRETFRNLKYEVRNKN--DLTREEIVELMRDVSKEDHSKRSSFV 115 (277)
T ss_dssp CCSSEEEEEEEEECCCCCGGGTCCCCTTHHHH-HHHHHHHHHHTTCEEEEEE--SCCHHHHHHHHHHHHTSCCTTEEEEE
T ss_pred CCCCCCCEEEEEEchhcCCcCCCCCCCCCHHH-HHHHHHHHHHCCCEEEEec--CCCHHHHHHHHHHHHhhcccCCCEEE
Confidence 3444556656653 23566555 57787755 5899887653 333222 23456777
Q ss_pred EEeccCCC
Q psy8996 57 VVASTFGN 64 (95)
Q Consensus 57 ~v~ST~G~ 64 (95)
++..+||.
T Consensus 116 v~ilSHG~ 123 (277)
T 4ehd_A 116 CVLLSHGE 123 (277)
T ss_dssp EEEESCEE
T ss_pred EEEEcCCC
Confidence 77778875
No 128
>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1 PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A*
Probab=41.42 E-value=18 Score=23.47 Aligned_cols=75 Identities=9% Similarity=0.075 Sum_probs=43.3
Q ss_pred cccccccEEEeCCCchHHHHHHHHHH-HHhCCCceEEeeCCC-CC-cccc----cccCeEEEEeccCCCCCCCCcHHHHH
Q psy8996 3 IVEKREPAFSISEVHYANNYTTESEV-HYANNYTTEVLRMDE-YD-MSSI----EHEALILVVASTFGNGDPPENGQEFA 75 (95)
Q Consensus 3 ~~~~~~~~~ygS~tG~ae~~A~~l~~-~~~~g~~~~v~~l~~-~~-~~~l----~~~~~vi~v~ST~G~Ge~Pdn~~~F~ 75 (95)
..-+|.|-+||++| =+++-+.+.+ +...|+.+++..-+. -. ++.+ .+.+.+|+=- |-..-......
T Consensus 19 lLG~REP~iYG~~T--l~di~~~l~~~a~~~g~~v~~~QSN~EGeLId~Ih~a~~~~dgiIINp-----gA~THtSvAlr 91 (156)
T 1gtz_A 19 LLGQAQPEIYGSDT--LADVEALCVKAAAAHGGTVDFRQSNHEGELVDWIHEARLNHCGIVINP-----AAYSHTSVAIL 91 (156)
T ss_dssp GTTTSCHHHHCSCC--HHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHCSEEEEEC-----TTHHHHCHHHH
T ss_pred ccCCCCCCcCCCCC--HHHHHHHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEECc-----hhhccccHHHH
Confidence 34578899999998 6677777765 556788887775552 00 1111 2345555521 22233445566
Q ss_pred HHHhhCC-CC
Q psy8996 76 QNLHALR-IG 84 (95)
Q Consensus 76 ~~L~~~~-~~ 84 (95)
+.|.... .|
T Consensus 92 DAl~~v~~~P 101 (156)
T 1gtz_A 92 DALNTCDGLP 101 (156)
T ss_dssp HHHHTSTTCC
T ss_pred HHHHhcCCCC
Confidence 6666655 44
No 129
>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=41.36 E-value=54 Score=22.58 Aligned_cols=33 Identities=9% Similarity=-0.161 Sum_probs=22.7
Q ss_pred cccEEEeCCCchHHHHHHHHHHHHhCCCceEEe
Q psy8996 7 REPAFSISEVHYANNYTTESEVHYANNYTTEVL 39 (95)
Q Consensus 7 ~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~ 39 (95)
|+|++.|.-+-+++...+..+.+.+.|.+.-+.
T Consensus 62 rvpviaGvg~~~t~~ai~la~~A~~~Gadavlv 94 (283)
T 2pcq_A 62 RKPFLVGLMEETLPQAEGALLEAKAAGAMALLA 94 (283)
T ss_dssp SSCCEEEECCSSHHHHHHHHHHHHHHTCSEEEE
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEe
Confidence 899999987767777655555565667664433
No 130
>1b4b_A Arginine repressor; core, oligomerization domain, helix TUR; HET: ARG; 2.20A {Geobacillus stearothermophilus} SCOP: d.74.2.1
Probab=41.20 E-value=32 Score=18.93 Aligned_cols=52 Identities=10% Similarity=0.062 Sum_probs=34.4
Q ss_pred EeCCCchHHHHHHHHHHHHhCCCceEEeeCCCCCcccccccCeEEEEeccCCCCCCCCcHHHHHHHHhh
Q psy8996 12 SISEVHYANNYTTESEVHYANNYTTEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFAQNLHA 80 (95)
Q Consensus 12 ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~~~~l~~~~~vi~v~ST~G~Ge~Pdn~~~F~~~L~~ 80 (95)
-=|.-|+|+.+|..|-+..... + ...+.+.+.+++++-+- +.++.+.+.|++
T Consensus 18 ikT~pG~A~~va~~iD~~~~~e----I-------~GTIAGDDTIlvi~r~~------~~a~~l~~~i~~ 69 (71)
T 1b4b_A 18 LRTLPGNAHAIGVLLDNLDWDE----I-------VGTICGDDTCLIICRTP------KDAKKVSNQLLS 69 (71)
T ss_dssp EEESTTCHHHHHHHHHHHCCTT----E-------EEEEECSSEEEEEESSH------HHHHHHHHHHHT
T ss_pred EEeCCCcHHHHHHHHHhCCCCC----e-------EEEEeeCCEEEEEECCH------HHHHHHHHHHHH
Confidence 3477899999999886642111 1 24456777777777653 667777777754
No 131
>2poc_A D-fructose-6- PH, isomerase domain of glutamine-fructose-6-phosphat transaminase (isomerizing); glucosamine-6-phosphate synthase; HET: BG6 UD1; 1.80A {Candida albicans} PDB: 2put_A* 2puv_A* 2puw_A*
Probab=40.93 E-value=62 Score=22.97 Aligned_cols=52 Identities=6% Similarity=-0.056 Sum_probs=32.3
Q ss_pred cccccEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCCCCCcccccc-cCeEEEE
Q psy8996 5 EKREPAFSISEVHYANNYTTESEVHYANNYTTEVLRMDEYDMSSIEH-EALILVV 58 (95)
Q Consensus 5 ~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~~~~l~~-~~~vi~v 58 (95)
.++-.++.-|++|++..+-+.++.+.++|.. ++.+....-..|.+ .+.+|.+
T Consensus 96 ~~~dlvI~iS~SG~T~e~l~a~~~Ak~~Ga~--~iaIT~~~~S~La~~ad~~l~~ 148 (367)
T 2poc_A 96 FRDDTCVFVSQSGETADSILALQYCLERGAL--TVGIVNSVGSSMSRQTHCGVHI 148 (367)
T ss_dssp CTTEEEEEEESSSCCHHHHHHHHHHHHTTCE--EEEEESSTTSHHHHHSSEEEEC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCC--EEEEECCCCChHHHhCCEEEEc
Confidence 3444677889999999998888888778754 33333332233433 3444433
No 132
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=40.86 E-value=50 Score=22.84 Aligned_cols=42 Identities=7% Similarity=-0.027 Sum_probs=28.9
Q ss_pred cccccccEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCCCC
Q psy8996 3 IVEKREPAFSISEVHYANNYTTESEVHYANNYTTEVLRMDEY 44 (95)
Q Consensus 3 ~~~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~ 44 (95)
.+..|+|++.|.-+.+++...+..+.+.+.|.+.-+.-..-|
T Consensus 65 ~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 106 (292)
T 2vc6_A 65 TANGRVPVIAGAGSNSTAEAIAFVRHAQNAGADGVLIVSPYY 106 (292)
T ss_dssp HHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred HhCCCCcEEEecCCccHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 456789999998887887766655666677877554444433
No 133
>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.00A {Chromobacterium violaceum} SCOP: d.218.1.12
Probab=40.07 E-value=53 Score=20.47 Aligned_cols=40 Identities=8% Similarity=-0.051 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHH--hCCCceEEeeCCCCCcccccccCeEEEEeccC
Q psy8996 19 ANNYTTESEVHY--ANNYTTEVLRMDEYDMSSIEHEALILVVASTF 62 (95)
Q Consensus 19 ae~~A~~l~~~~--~~g~~~~v~~l~~~~~~~l~~~~~vi~v~ST~ 62 (95)
++.+++.+.+++ +++.++.++++.+.. . -.+++|+++.+-
T Consensus 3 ~~~l~~~i~~al~dkKa~DI~vlDv~~~s--~--~~DyfVIaTg~S 44 (130)
T 2id1_A 3 IQEISKLAIEALEDIKGKDIIELDTSKLT--S--LFQRMIVATGDS 44 (130)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEGGGTC--S--SCSEEEEEECSS
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEEcCCCC--c--ccCEEEEEEcCC
Confidence 567777777644 367788899887643 2 245666655443
No 134
>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; putative phosphosugar isomerase, structural genomics, joint for structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus subtilis}
Probab=39.87 E-value=30 Score=24.25 Aligned_cols=52 Identities=6% Similarity=-0.009 Sum_probs=33.2
Q ss_pred ccccccEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCCCCCcccccc-cCeEEE
Q psy8996 4 VEKREPAFSISEVHYANNYTTESEVHYANNYTTEVLRMDEYDMSSIEH-EALILV 57 (95)
Q Consensus 4 ~~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~~~~l~~-~~~vi~ 57 (95)
+.++-.++.-|++|+|.+.-+.++.+.++|. .++.+....-..|.+ .+.+|.
T Consensus 72 l~~~dlvI~iS~SG~T~e~l~a~~~ak~~Ga--~~iaIT~~~~S~La~~ad~~l~ 124 (329)
T 3eua_A 72 LGEKSLVILCSHSGNTPETVKAAAFARGKGA--LTIAMTFKPESPLAQEAQYVAQ 124 (329)
T ss_dssp CSTTEEEEEEESSSCCHHHHHHHHHHHHTTC--EEEEEESCTTSHHHHHSSEEEE
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHHHCCC--CEEEEECCCCChHHHhCCEEEE
Confidence 3455567888999999999888888777774 444444333334433 344443
No 135
>3fkj_A Putative phosphosugar isomerases; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.12A {Salmonella typhimurium LT2}
Probab=39.71 E-value=22 Score=25.29 Aligned_cols=53 Identities=8% Similarity=0.011 Sum_probs=32.9
Q ss_pred ccccccEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCCCCCcccccc-cCeEEEE
Q psy8996 4 VEKREPAFSISEVHYANNYTTESEVHYANNYTTEVLRMDEYDMSSIEH-EALILVV 58 (95)
Q Consensus 4 ~~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~~~~l~~-~~~vi~v 58 (95)
+.++-.++.-|++|+|.+.-+.++.+.++|. .++.+.+..-..|.+ .+.+|.+
T Consensus 87 l~~~dlvI~iS~SG~T~e~l~a~~~ak~~Ga--~~iaIT~~~~S~La~~ad~~l~~ 140 (347)
T 3fkj_A 87 LGKNSVVILASQQGNTAETVAAARVAREKGA--ATIGLVYQPDTPLCEYSDYIIEY 140 (347)
T ss_dssp CSTTEEEEEEESSSCCHHHHHHHHHHHHHTC--EEEEEESSTTCHHHHTCSEEEEC
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCC--cEEEEeCCCCChHHhhcCeEEEe
Confidence 3455567788999999999888877777774 444444333334433 3444433
No 136
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=39.58 E-value=53 Score=23.07 Aligned_cols=39 Identities=8% Similarity=0.013 Sum_probs=27.8
Q ss_pred ccccccccEEEeCCCchHHHHHHHHHHHHhCCCceEEee
Q psy8996 2 EIVEKREPAFSISEVHYANNYTTESEVHYANNYTTEVLR 40 (95)
Q Consensus 2 ~~~~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~ 40 (95)
+.+..|+|++.|.-+.++++..+..+.+.+.|.+.-+.-
T Consensus 88 ~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~ 126 (315)
T 3na8_A 88 KTVAHRVPTIVSVSDLTTAKTVRRAQFAESLGAEAVMVL 126 (315)
T ss_dssp HHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEC
T ss_pred HHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 345678999999887788777666666767787654443
No 137
>3pam_A Transmembrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.31A {Bartonella henselae}
Probab=39.49 E-value=40 Score=22.18 Aligned_cols=27 Identities=7% Similarity=-0.054 Sum_probs=21.0
Q ss_pred CchHHHHHHHHHH-HHhCCCceEEeeCC
Q psy8996 16 VHYANNYTTESEV-HYANNYTTEVLRMD 42 (95)
Q Consensus 16 tG~ae~~A~~l~~-~~~~g~~~~v~~l~ 42 (95)
+...+.+|+.|++ +.+.|+++++..++
T Consensus 137 ~~~~~~~a~~iq~~l~~iGI~v~i~~~~ 164 (259)
T 3pam_A 137 SLEEEKVALAFQSNLSRLGIHAEIRTVD 164 (259)
T ss_dssp SHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred CchHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 4667889999976 44589999888776
No 138
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=39.29 E-value=45 Score=23.37 Aligned_cols=38 Identities=11% Similarity=-0.063 Sum_probs=27.0
Q ss_pred cccccccEEEeCCCchHHHHHHHHHHHHhCCCceEEee
Q psy8996 3 IVEKREPAFSISEVHYANNYTTESEVHYANNYTTEVLR 40 (95)
Q Consensus 3 ~~~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~ 40 (95)
.+..|+|++.|.-+.+++...+..+.+.+.|.+.-+.-
T Consensus 73 ~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~ 110 (309)
T 3fkr_A 73 HVAGRVPVIVTTSHYSTQVCAARSLRAQQLGAAMVMAM 110 (309)
T ss_dssp HHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEC
T ss_pred HhCCCCcEEEecCCchHHHHHHHHHHHHHcCCCEEEEc
Confidence 45678999999877777776665566777787754443
No 139
>3knz_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 2.50A {Salmonella enterica subsp}
Probab=39.09 E-value=27 Score=25.07 Aligned_cols=44 Identities=11% Similarity=-0.046 Sum_probs=29.5
Q ss_pred cccccEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCCCCCccccc
Q psy8996 5 EKREPAFSISEVHYANNYTTESEVHYANNYTTEVLRMDEYDMSSIE 50 (95)
Q Consensus 5 ~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~~~~l~ 50 (95)
.++-.++.-|++|+|.+.-+.++.+.++|. .++.+....-..|.
T Consensus 96 ~~~dlvI~iS~SGeT~e~l~a~~~ak~~Ga--~~IaIT~~~~S~La 139 (366)
T 3knz_A 96 SGKALVVGISQGGGSLSTLAAMERARNVGH--ITASMAGVAPATID 139 (366)
T ss_dssp SCSEEEEEEESSSCCHHHHHHHHHHHHTTC--EEEEEESSSSCGGG
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHcCC--CEEEEECCCCChhh
Confidence 345557778999999999888888877874 44444433333443
No 140
>1j5x_A Glucosamine-6-phosphate deaminase; structural genomics, TM0813, glucosamine-6-phosphate deamina PSI, protein structure initiative; 1.80A {Thermotoga maritima} SCOP: c.80.1.1
Probab=39.04 E-value=32 Score=24.24 Aligned_cols=49 Identities=18% Similarity=0.152 Sum_probs=31.3
Q ss_pred ccEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCCCCCcccccc-cCeEEEE
Q psy8996 8 EPAFSISEVHYANNYTTESEVHYANNYTTEVLRMDEYDMSSIEH-EALILVV 58 (95)
Q Consensus 8 ~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~~~~l~~-~~~vi~v 58 (95)
-.++.-|++|++..+-+.+..+.++|. .++.+.+..-..|.+ .+.+|.+
T Consensus 102 dlvI~iS~SG~T~e~l~a~~~ak~~Ga--~vIaIT~~~~S~La~~ad~~l~~ 151 (342)
T 1j5x_A 102 GLAFLFSRTGNTTEVLLANDVLKKRNH--RTIGITIEEESRLAKESDLPLVF 151 (342)
T ss_dssp EEEEEECSSSCCHHHHHHHHHHHHTTE--EEEEEESCTTSHHHHHSSEEEEC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHCCC--CEEEEECCCCCHHHHhcCEEEEc
Confidence 467888999999999888887777774 444444433234433 3444443
No 141
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=38.73 E-value=51 Score=23.12 Aligned_cols=41 Identities=5% Similarity=-0.048 Sum_probs=28.7
Q ss_pred cccccccEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCCCC
Q psy8996 3 IVEKREPAFSISEVHYANNYTTESEVHYANNYTTEVLRMDEY 44 (95)
Q Consensus 3 ~~~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~ 44 (95)
.+..|+|++.|.-+ +++...+..+.+.+.|.+.-+.-..-|
T Consensus 77 ~~~grvpViaGvg~-st~~ai~la~~A~~~Gadavlv~~P~y 117 (314)
T 3d0c_A 77 LVNGRATVVAGIGY-SVDTAIELGKSAIDSGADCVMIHQPVH 117 (314)
T ss_dssp HHTTSSEEEEEECS-SHHHHHHHHHHHHHTTCSEEEECCCCC
T ss_pred HhCCCCeEEecCCc-CHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 45678999999888 887765555667778877655544444
No 142
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=38.59 E-value=51 Score=22.38 Aligned_cols=38 Identities=5% Similarity=-0.231 Sum_probs=27.7
Q ss_pred cccccEEEeCCCchHHHHHHHHHHH-HhCCCceEEeeCC
Q psy8996 5 EKREPAFSISEVHYANNYTTESEVH-YANNYTTEVLRMD 42 (95)
Q Consensus 5 ~~~~~~~ygS~tG~ae~~A~~l~~~-~~~g~~~~v~~l~ 42 (95)
-|+++++|.+...|+....+.+.+. .+.|+.+......
T Consensus 140 ~k~vgvi~~~~~~~s~~~~~~~~~~~~~~g~~~v~~~~~ 178 (302)
T 3lkv_A 140 VKSIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEATAL 178 (302)
T ss_dssp CCEEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEEEECS
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 3678999998888888888888764 4578765544433
No 143
>1tzb_A Glucose-6-phosphate isomerase, conjectural; enzyme, crenarchaeon, hyperthermophIle, PGI family; 1.16A {Pyrobaculum aerophilum} SCOP: c.80.1.1 PDB: 1tzc_A* 1x9h_A* 1x9i_A*
Probab=38.56 E-value=76 Score=21.78 Aligned_cols=35 Identities=6% Similarity=-0.072 Sum_probs=26.3
Q ss_pred cccccEEEeCCCchHHHHHHHHHHHHhCCCceEEe
Q psy8996 5 EKREPAFSISEVHYANNYTTESEVHYANNYTTEVL 39 (95)
Q Consensus 5 ~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~ 39 (95)
.++-.++.-|++|++.++-+.+..+.++|..+-.+
T Consensus 78 ~~~dlvI~iS~SG~T~e~~~a~~~ak~~g~~~iaI 112 (302)
T 1tzb_A 78 ARDGLLIAVSYSGNTIETLYTVEYAKRRRIPAVAI 112 (302)
T ss_dssp CSSSEEEEECSSSCCHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEE
Confidence 44556778899999999988888887788554333
No 144
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=38.55 E-value=63 Score=22.41 Aligned_cols=36 Identities=14% Similarity=0.051 Sum_probs=24.2
Q ss_pred cccccccEEEeCCCchHHHHHHHHHHHHhCCCceEE
Q psy8996 3 IVEKREPAFSISEVHYANNYTTESEVHYANNYTTEV 38 (95)
Q Consensus 3 ~~~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v 38 (95)
.+..|+|++.|.-+-+++...+..+.+.+.|.+.-+
T Consensus 72 ~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavl 107 (297)
T 3flu_A 72 HVAKRVPVIAGTGANNTVEAIALSQAAEKAGADYTL 107 (297)
T ss_dssp HHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEE
T ss_pred HhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEE
Confidence 456788888887776777766655566666765433
No 145
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=38.22 E-value=63 Score=22.48 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=26.6
Q ss_pred cccccccEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCC
Q psy8996 3 IVEKREPAFSISEVHYANNYTTESEVHYANNYTTEVLRMD 42 (95)
Q Consensus 3 ~~~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~ 42 (95)
.+..|+|++.|.-+-+++...+..+.+.+.|.+.-+.-..
T Consensus 77 ~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P 116 (301)
T 1xky_A 77 VVDKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAP 116 (301)
T ss_dssp HHTTSSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred HhCCCceEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 4567889999887777777655555666677665444333
No 146
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=38.13 E-value=59 Score=22.48 Aligned_cols=40 Identities=3% Similarity=-0.134 Sum_probs=26.4
Q ss_pred cccccccEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCC
Q psy8996 3 IVEKREPAFSISEVHYANNYTTESEVHYANNYTTEVLRMD 42 (95)
Q Consensus 3 ~~~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~ 42 (95)
.+..|+|++.|.-+-+++...+..+.+.+.|.+.-+.-..
T Consensus 65 ~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P 104 (294)
T 2ehh_A 65 RAAGRIKVIAGTGGNATHEAVHLTAHAKEVGADGALVVVP 104 (294)
T ss_dssp HHTTSSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred HhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 4567889998887777777655555566677765444333
No 147
>2zj3_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1; glucosamine-6-phosphate synthase, aldose/ketose isomerase, rossmann-like fold; HET: G6P; 1.90A {Homo sapiens} PDB: 2zj4_A* 2v4m_A*
Probab=38.10 E-value=74 Score=22.66 Aligned_cols=32 Identities=9% Similarity=-0.028 Sum_probs=24.9
Q ss_pred cccccEEEeCCCchHHHHHHHHHHHHhCCCce
Q psy8996 5 EKREPAFSISEVHYANNYTTESEVHYANNYTT 36 (95)
Q Consensus 5 ~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~ 36 (95)
.++-.++.-|++|++..+-+.+..+.++|..+
T Consensus 106 ~~~dlvI~iS~SG~T~e~l~a~~~Ak~~Ga~~ 137 (375)
T 2zj3_A 106 FRDDVCFFLSQSGETADTLMGLRYCKERGALT 137 (375)
T ss_dssp CTTEEEEEEESSSCCHHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHcCCcE
Confidence 44546788899999999988888887788543
No 148
>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}
Probab=38.04 E-value=40 Score=17.86 Aligned_cols=37 Identities=11% Similarity=0.158 Sum_probs=28.6
Q ss_pred cccEEEeCCCchHHHHHHHHHHHHh-CCCceEEeeCCC
Q psy8996 7 REPAFSISEVHYANNYTTESEVHYA-NNYTTEVLRMDE 43 (95)
Q Consensus 7 ~~~~~ygS~tG~ae~~A~~l~~~~~-~g~~~~v~~l~~ 43 (95)
++-+||++.=+.++.+...|.+++. .+.+..+.+++.
T Consensus 3 ~~~~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~ 40 (80)
T 2k8s_A 3 SKAIFYHAGCPVCVSAEQAVANAIDPSKYTVEIVHLGT 40 (80)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHSCTTTEEEEEEETTT
T ss_pred ceEEEeCCCCCchHHHHHHHHHHHHhcCCeEEEEEecC
Confidence 3567888888999999888887654 566777888774
No 149
>1gqo_A Dehydroquinase; dehydratase, lyase; 2.10A {Bacillus subtilis} SCOP: c.23.13.1
Probab=37.69 E-value=17 Score=23.36 Aligned_cols=76 Identities=13% Similarity=0.125 Sum_probs=45.3
Q ss_pred cccccccEEEeCCCchHHHHHHHHHH-HHhCCCceEEeeCCC-CC-cccc----cccCeEEEEeccCCCCCCCCcHHHHH
Q psy8996 3 IVEKREPAFSISEVHYANNYTTESEV-HYANNYTTEVLRMDE-YD-MSSI----EHEALILVVASTFGNGDPPENGQEFA 75 (95)
Q Consensus 3 ~~~~~~~~~ygS~tG~ae~~A~~l~~-~~~~g~~~~v~~l~~-~~-~~~l----~~~~~vi~v~ST~G~Ge~Pdn~~~F~ 75 (95)
..-+|.|-.||++| =+++-+++.+ +...|+.+++..-+. -. ++.+ .+.+.+|+=- |-..-......
T Consensus 13 lLG~REP~iYG~~t--l~di~~~l~~~a~~~g~~~~~~QSN~EgeLid~Ih~a~~~~dgiiiNp-----gA~THtSvAlr 85 (143)
T 1gqo_A 13 RLGSREPEVFGRQT--LTDIETDLFQFAEALHIQLTFFQSNHEGDLIDAIHEAEEQYSGIVLNP-----GALSHYSYAIR 85 (143)
T ss_dssp GTTSSCHHHHCSCC--HHHHHHHHHHHHHHHTCEEEEEECSCHHHHHHHHHHHTTTCSEEEEEC-----GGGGGTCHHHH
T ss_pred ccCCCCCCcCCcCC--HHHHHHHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEEcc-----chhccccHHHH
Confidence 34578899999998 6667677765 456788777765542 00 1111 2345555532 22234456677
Q ss_pred HHHhhCCCCC
Q psy8996 76 QNLHALRIGE 85 (95)
Q Consensus 76 ~~L~~~~~~~ 85 (95)
+.|.....|-
T Consensus 86 DAl~~v~~P~ 95 (143)
T 1gqo_A 86 DAVSSISLPV 95 (143)
T ss_dssp HHHHTSCSCE
T ss_pred HHHHhCCCCE
Confidence 7777766654
No 150
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=37.65 E-value=44 Score=21.95 Aligned_cols=33 Identities=3% Similarity=-0.162 Sum_probs=23.6
Q ss_pred EEEeCCCchHHHHHHHHHH-HHhCCCceEEeeCC
Q psy8996 10 AFSISEVHYANNYTTESEV-HYANNYTTEVLRMD 42 (95)
Q Consensus 10 ~~ygS~tG~ae~~A~~l~~-~~~~g~~~~v~~l~ 42 (95)
+.+.+.....+.+|+.|++ +.+.|+++++..++
T Consensus 132 l~~~~~~~~~~~~a~~iq~~l~~iGi~v~i~~~~ 165 (258)
T 3lvu_A 132 FLLRQGDSDMQTVLEIYTRALERLGIAAQIEKVD 165 (258)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHTTTCCCEEEEEC
T ss_pred EEecCCChhHHHHHHHHHHHHHHcCCeeEEEecC
Confidence 4444444567888999976 45689999888765
No 151
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=37.55 E-value=65 Score=22.60 Aligned_cols=38 Identities=13% Similarity=0.129 Sum_probs=26.1
Q ss_pred ccccccccEEEeCCCchHHHHHHHHHHHHhCCCceEEe
Q psy8996 2 EIVEKREPAFSISEVHYANNYTTESEVHYANNYTTEVL 39 (95)
Q Consensus 2 ~~~~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~ 39 (95)
+.+..|+|++.|.-+-+++...+..+.+.+.|.+.-+.
T Consensus 87 ~~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv 124 (314)
T 3qze_A 87 DQVKGRIPVIAGTGANSTREAVALTEAAKSGGADACLL 124 (314)
T ss_dssp HHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEE
Confidence 34567889999887777777666666666677664433
No 152
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=37.25 E-value=19 Score=22.70 Aligned_cols=63 Identities=8% Similarity=0.090 Sum_probs=37.8
Q ss_pred CchHHHHHHHHHHHH-hCCCceEEeeCCCCCcc------------cccccCeEEEEeccCCC-CCC-----CCcHHHHHH
Q psy8996 16 VHYANNYTTESEVHY-ANNYTTEVLRMDEYDMS------------SIEHEALILVVASTFGN-GDP-----PENGQEFAQ 76 (95)
Q Consensus 16 tG~ae~~A~~l~~~~-~~g~~~~v~~l~~~~~~------------~l~~~~~vi~v~ST~G~-Ge~-----Pdn~~~F~~ 76 (95)
.|+..+ ++.|.+.+ ..||+|.+.. +.+.. +....+.+|++.-|||+ |.. +=+..++|.
T Consensus 37 ~Gt~~D-~~~L~~~f~~LgF~V~~~~--dlt~~em~~~l~~~~~~dh~~~dc~vv~ilSHG~~g~i~g~D~~~~l~~i~~ 113 (146)
T 2dko_A 37 SGTDVD-AANLRETFRNLKYEVRNKN--DLTREEIVELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITN 113 (146)
T ss_dssp TTHHHH-HHHHHHHHHHTTCEEEEEE--SCCHHHHHHHHHHHHHSCCTTEEEEEEEEESCEETTEEEETTEEEEHHHHHH
T ss_pred CCCHHH-HHHHHHHHHHCCCEEEEee--CCCHHHHHHHHHHHHHhhcCCCCeEEEEeccCCCCCEEEEeCCcEeHHHHHH
Confidence 577666 57788755 5899987663 33322 22355678888888984 211 234556666
Q ss_pred HHhhC
Q psy8996 77 NLHAL 81 (95)
Q Consensus 77 ~L~~~ 81 (95)
.+...
T Consensus 114 ~F~~~ 118 (146)
T 2dko_A 114 FFRGD 118 (146)
T ss_dssp TTSTT
T ss_pred Hhccc
Confidence 55433
No 153
>2bf9_A Pancreatic hormone; turkey, pancreas, polypeptide, atomic resolution, anisotropic refinement; HET: TYC; 0.99A {Meleagris gallopavo} SCOP: j.6.1.1 PDB: 1ppt_A 2k76_A 2h3s_B* 2h3t_B* 2h4b_C*
Probab=37.12 E-value=13 Score=18.31 Aligned_cols=18 Identities=28% Similarity=0.501 Sum_probs=15.3
Q ss_pred CCCCCCCcHHHHHHHHhh
Q psy8996 63 GNGDPPENGQEFAQNLHA 80 (95)
Q Consensus 63 G~Ge~Pdn~~~F~~~L~~ 80 (95)
|+..+|+.+..++..|+.
T Consensus 9 G~dA~~Eela~Y~~~Lrh 26 (36)
T 2bf9_A 9 GDDAPVEDLIRFYNDLQQ 26 (36)
T ss_dssp CTTSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 788889999999998864
No 154
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=37.07 E-value=69 Score=22.09 Aligned_cols=42 Identities=14% Similarity=0.037 Sum_probs=28.7
Q ss_pred cccccccEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCCCC
Q psy8996 3 IVEKREPAFSISEVHYANNYTTESEVHYANNYTTEVLRMDEY 44 (95)
Q Consensus 3 ~~~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~ 44 (95)
.+..|+|++.|.-+-+++...+..+.+.+.|.+.-+.-..-|
T Consensus 66 ~~~gr~pvi~Gvg~~~t~~ai~la~~a~~~Gadavlv~~P~y 107 (291)
T 3a5f_A 66 KVNKRIPVIAGTGSNNTAASIAMSKWAESIGVDGLLVITPYY 107 (291)
T ss_dssp HHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred HhCCCCcEEEeCCcccHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 456789999998877777766655666677877554444433
No 155
>3ups_A Iojap-like protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; HET: MSE; 1.75A {Zymomonas mobilis subsp}
Probab=36.89 E-value=77 Score=19.86 Aligned_cols=41 Identities=2% Similarity=-0.015 Sum_probs=27.1
Q ss_pred chHHHHHHHHHHHH--hCCCceEEeeCCCCCcccccccCeEEEEecc
Q psy8996 17 HYANNYTTESEVHY--ANNYTTEVLRMDEYDMSSIEHEALILVVAST 61 (95)
Q Consensus 17 G~ae~~A~~l~~~~--~~g~~~~v~~l~~~~~~~l~~~~~vi~v~ST 61 (95)
=+++.+++.+.+++ +++.++.++++.+.. . -.+++|+++.+
T Consensus 17 ~~~~~l~~~i~~al~dkKa~DI~vlDv~~~s--~--~~DyfVIatg~ 59 (136)
T 3ups_A 17 FDPEMLLKLVTDSLDDDQALEIATIPLAGKS--S--IADYMVIASGR 59 (136)
T ss_dssp CCHHHHHHHHHHHHHHTTCEEEEEEECTTTC--S--SCSEEEEEECS
T ss_pred CCHHHHHHHHHHHHHHcCCCCeEEEECCCCC--c--ccCEEEEEEcC
Confidence 34677888887654 367889999988743 2 24666666544
No 156
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=36.21 E-value=50 Score=23.05 Aligned_cols=35 Identities=9% Similarity=-0.080 Sum_probs=23.2
Q ss_pred cccccccEEEeCCCchHHHHHHHHHHHHhCCCceE
Q psy8996 3 IVEKREPAFSISEVHYANNYTTESEVHYANNYTTE 37 (95)
Q Consensus 3 ~~~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~ 37 (95)
.+..|+|++.|.-+.++++..+..+.+.+.|.+.-
T Consensus 80 ~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadav 114 (304)
T 3l21_A 80 AVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGL 114 (304)
T ss_dssp HHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEE
T ss_pred HhCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 45678888888777777776655555555565543
No 157
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=35.76 E-value=57 Score=22.56 Aligned_cols=37 Identities=19% Similarity=0.140 Sum_probs=24.2
Q ss_pred cccccccEEEeCCCchHHHHHHHHHHHHhCCCceEEe
Q psy8996 3 IVEKREPAFSISEVHYANNYTTESEVHYANNYTTEVL 39 (95)
Q Consensus 3 ~~~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~ 39 (95)
.+..|+|++.|.-+.+++...+..+.+.+.|.+.-+.
T Consensus 67 ~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv 103 (292)
T 3daq_A 67 LVDKRVPVIAGTGTNDTEKSIQASIQAKALGADAIML 103 (292)
T ss_dssp HHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEE
T ss_pred HhCCCCcEEEeCCcccHHHHHHHHHHHHHcCCCEEEE
Confidence 4567889999887777777655555555567654333
No 158
>2p5m_A Arginine repressor; alpha-beta, L-arginine binding domain, DNA binding protein; HET: ARG; 1.95A {Bacillus subtilis} SCOP: d.74.2.1
Probab=35.69 E-value=31 Score=19.53 Aligned_cols=51 Identities=20% Similarity=0.126 Sum_probs=32.9
Q ss_pred eCCCchHHHHHHHHHHHHhCCCceEEeeCCCCCcccccccCeEEEEeccCCCCCCCCcHHHHHHHHhh
Q psy8996 13 ISEVHYANNYTTESEVHYANNYTTEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFAQNLHA 80 (95)
Q Consensus 13 gS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~~~~l~~~~~vi~v~ST~G~Ge~Pdn~~~F~~~L~~ 80 (95)
=|.-|+|+.+|..|-+... ++. ...+.+.+.+++++-+- +.++.+.+.|++
T Consensus 31 kT~PG~A~~vA~~iD~~~~----------~eI-lGTIAGDDTIlvi~r~~------~~a~~l~~~l~~ 81 (83)
T 2p5m_A 31 KTMPGNAQAIGALMDNLDW----------DEM-MGTICGDDTILIICRTP------EDTEGVKNRLLE 81 (83)
T ss_dssp EESTTCHHHHHHHHHTTTC----------TTC-CEEEECSSEEEEECSSH------HHHHHHHHHHHT
T ss_pred EeCCCcHHHHHHHHHhCCC----------CCe-EEEEecCCEEEEEECCH------HHHHHHHHHHHH
Confidence 4778999999887754211 111 34556777777777653 667777777753
No 159
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=35.56 E-value=33 Score=22.02 Aligned_cols=63 Identities=6% Similarity=0.064 Sum_probs=37.8
Q ss_pred CchHHHHHHHHHHHH-hCCCceEEeeCCCCCcc------------cccccCeEEEEeccCCC-CCC------CCcHHHHH
Q psy8996 16 VHYANNYTTESEVHY-ANNYTTEVLRMDEYDMS------------SIEHEALILVVASTFGN-GDP------PENGQEFA 75 (95)
Q Consensus 16 tG~ae~~A~~l~~~~-~~g~~~~v~~l~~~~~~------------~l~~~~~vi~v~ST~G~-Ge~------Pdn~~~F~ 75 (95)
.|+..+ ++.|.+.+ ..||.|.+.. +.+.. +....+.+|++.-|||. |.. +-+..++|
T Consensus 51 ~Gt~~D-~~~L~~~f~~LgF~V~~~~--dlt~~em~~~l~~~~~~dh~~~dc~vv~ilSHG~~g~i~g~D~~~v~i~~i~ 127 (164)
T 1qtn_A 51 NGTHLD-AGALTTTFEELHFEIKPHD--DCTVEQIYEILKIYQLMDHSNMDCFICCILSHGDKGIIYGTDGQEAPIYELT 127 (164)
T ss_dssp TTHHHH-HHHHHHHHHHTTCEEEEEE--SCCHHHHHHHHHHHHHSCCTTCSCEEEEEESCEETTEEECTTSCEEEHHHHH
T ss_pred CCcHHH-HHHHHHHHHHCCCEEEEec--CCCHHHHHHHHHHHHHhhccCCCEEEEEeCCCCCCCEEEeeCCCEeeHHHHH
Confidence 466666 57788765 5899987663 33322 23456788888888985 221 22345666
Q ss_pred HHHhhC
Q psy8996 76 QNLHAL 81 (95)
Q Consensus 76 ~~L~~~ 81 (95)
..+...
T Consensus 128 ~~F~~~ 133 (164)
T 1qtn_A 128 SQFTGL 133 (164)
T ss_dssp GGGSTT
T ss_pred HHhccc
Confidence 655443
No 160
>1xxa_A ARGR, arginine repressor; complex (DNA binding protein/peptide); HET: ARG; 2.20A {Escherichia coli K12} SCOP: d.74.2.1 PDB: 1xxb_A* 1xxc_A
Probab=35.50 E-value=52 Score=18.41 Aligned_cols=54 Identities=6% Similarity=-0.038 Sum_probs=34.9
Q ss_pred EEeCCCchHHHHHHHHHHHHhCCCceEEeeCCCCCcccccccCeEEEEeccCCCCCCCCcHHHHHHHHhh
Q psy8996 11 FSISEVHYANNYTTESEVHYANNYTTEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFAQNLHA 80 (95)
Q Consensus 11 ~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~~~~l~~~~~vi~v~ST~G~Ge~Pdn~~~F~~~L~~ 80 (95)
+-=|.-|+|+.+|..|-+... . ..+ ...+.+.+.+++++-+- +.++.+.+.|++
T Consensus 19 VikT~PG~A~~va~~iD~~~~--~-~~I-------~GTIAGDDTIlvi~r~~------~~a~~l~~~i~~ 72 (78)
T 1xxa_A 19 VIHTSPGAAQLIARLLDSLGK--A-EGI-------LGTIAGDDTIFTTPANG------FTVKDLYEAILE 72 (78)
T ss_dssp EEEESTTTHHHHHHHHTTTTT--T-TTE-------EEEEECSSEEEEEECTT------CCHHHHHHHHHT
T ss_pred EEEeCCCcHHHHHHHHHhcCC--C-CCe-------EEEEecCCEEEEEECCH------HHHHHHHHHHHH
Confidence 334778999999987754211 0 001 23456777777777654 678888888865
No 161
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=35.09 E-value=75 Score=21.96 Aligned_cols=38 Identities=8% Similarity=-0.098 Sum_probs=25.6
Q ss_pred ccccccccEEEeCCCchHHHHHHHHHHHHhCCCceEEe
Q psy8996 2 EIVEKREPAFSISEVHYANNYTTESEVHYANNYTTEVL 39 (95)
Q Consensus 2 ~~~~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~ 39 (95)
+.+..|+|++.|.-+-+++...+..+.+.+.|.+.-+.
T Consensus 67 ~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv 104 (294)
T 3b4u_A 67 AAGIAPSRIVTGVLVDSIEDAADQSAEALNAGARNILL 104 (294)
T ss_dssp HTTCCGGGEEEEECCSSHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHhCCCCcEEEeCCCccHHHHHHHHHHHHhcCCCEEEE
Confidence 34567889999887777777655555566677664433
No 162
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=34.96 E-value=52 Score=25.12 Aligned_cols=53 Identities=11% Similarity=0.083 Sum_probs=34.3
Q ss_pred cccEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCCCCCcccccccCeEEEEeccCCCCCCCCcHHHHHHHHhhC
Q psy8996 7 REPAFSISEVHYANNYTTESEVHYANNYTTEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFAQNLHAL 81 (95)
Q Consensus 7 ~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~~~~l~~~~~vi~v~ST~G~Ge~Pdn~~~F~~~L~~~ 81 (95)
|++||-|+.+|.+.-+-+.+....+. +.+++||+ +-||-+....+|++.+...
T Consensus 167 r~gIfgg~GvGKT~L~~~l~~~~a~~------------------~~~v~V~~----~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 167 KIGLFGGAGVGKTVLIMELINNIAKA------------------HGGVSVFG----GVGERTREGNDLYMEMKES 219 (498)
T ss_dssp CEEEEECSSSSHHHHHHHHHHHTTTT------------------CSSCEEEE----EESCCSHHHHHHHHHHHHT
T ss_pred eEEeecCCCCCchHHHHHHHHHHHhh------------------CCCEEEEE----EcccCcHHHHHHHHhhhcc
Confidence 67999999999998765544442211 01233433 5677788888888777653
No 163
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=34.71 E-value=25 Score=23.22 Aligned_cols=76 Identities=13% Similarity=0.101 Sum_probs=44.9
Q ss_pred cccccccEEEeCCCchHHHHHHHHHH-HHhCCCceEEeeCCC-CC-cccc----cccCeEEEEeccCCCCCCCCcHHHHH
Q psy8996 3 IVEKREPAFSISEVHYANNYTTESEV-HYANNYTTEVLRMDE-YD-MSSI----EHEALILVVASTFGNGDPPENGQEFA 75 (95)
Q Consensus 3 ~~~~~~~~~ygS~tG~ae~~A~~l~~-~~~~g~~~~v~~l~~-~~-~~~l----~~~~~vi~v~ST~G~Ge~Pdn~~~F~ 75 (95)
..-+|.|-+||++| =+++-+.+.+ +.+.|+.+++..-+. -. ++.+ .+.+.+|+=-.-| .-.....-
T Consensus 41 lLG~REP~iYG~~T--L~dI~~~l~~~a~~~G~~l~~~QSN~EGeLId~Ih~A~~~~dgIIINPgAy-----THtSvAlr 113 (172)
T 3n8k_A 41 RLGRREPAVYGGTT--HDELVALIEREAAELGLKAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGL-----THTSVALR 113 (172)
T ss_dssp GTTTSCHHHHCSCC--HHHHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHHHHHTCCEEEECGGG-----GGTCHHHH
T ss_pred ccCCCCCCcCCCCC--HHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCcEEEECcchh-----hhhhHHHH
Confidence 34578899999997 6667677765 556888877775552 00 1111 2345555533222 33445667
Q ss_pred HHHhhCCCCC
Q psy8996 76 QNLHALRIGE 85 (95)
Q Consensus 76 ~~L~~~~~~~ 85 (95)
+.|...+.|-
T Consensus 114 DAL~~v~~P~ 123 (172)
T 3n8k_A 114 DACAELSAPL 123 (172)
T ss_dssp HHHTTCCSCE
T ss_pred HHHHhCCCCE
Confidence 7777666554
No 164
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=34.68 E-value=21 Score=23.13 Aligned_cols=76 Identities=14% Similarity=0.185 Sum_probs=43.7
Q ss_pred cccccccEEEeCCCchHHHHHHHHHH-HHhCCCceEEeeCCC-CC-ccc----ccccCeEEEEeccCCCCCCCCcHHHHH
Q psy8996 3 IVEKREPAFSISEVHYANNYTTESEV-HYANNYTTEVLRMDE-YD-MSS----IEHEALILVVASTFGNGDPPENGQEFA 75 (95)
Q Consensus 3 ~~~~~~~~~ygS~tG~ae~~A~~l~~-~~~~g~~~~v~~l~~-~~-~~~----l~~~~~vi~v~ST~G~Ge~Pdn~~~F~ 75 (95)
..-+|.|-.||++| =+++-+.+.+ +.+.|+.+++..-+. -. ++. ..+.+.+|+=-.-| .-......
T Consensus 20 lLG~REP~iYG~~T--l~di~~~l~~~a~~~g~~~~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~-----THtSvAlr 92 (153)
T 3lwz_A 20 LLGTREPEKYGYTT--LAEIVSQLEIQAQGMDVALSHLQSNAEHALIDSIHQARGNTDFILINPAAF-----THTSVALR 92 (153)
T ss_dssp GTTTSSHHHHCCCC--HHHHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHHTTTCSEEEEECGGG-----GGTCHHHH
T ss_pred ccCCCCCCcCCCCC--HHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCceEEEccccc-----eechHHHH
Confidence 34578899999998 6667677765 556787777665542 00 111 12345555533222 33445666
Q ss_pred HHHhhCCCCC
Q psy8996 76 QNLHALRIGE 85 (95)
Q Consensus 76 ~~L~~~~~~~ 85 (95)
+.|.....|-
T Consensus 93 DAl~~~~~P~ 102 (153)
T 3lwz_A 93 DALLGVQIPF 102 (153)
T ss_dssp HHHHHHTCCE
T ss_pred HHHHhcCCCE
Confidence 6676655553
No 165
>1moq_A Glucosamine 6-phosphate synthase; glutamine amidotransferase; HET: GLP MES; 1.57A {Escherichia coli} SCOP: c.80.1.1 PDB: 1mor_A* 1mos_A*
Probab=34.47 E-value=67 Score=22.71 Aligned_cols=55 Identities=15% Similarity=0.122 Sum_probs=33.1
Q ss_pred ccccccEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCCCCCcccccc-cCeEEEEe
Q psy8996 4 VEKREPAFSISEVHYANNYTTESEVHYANNYTTEVLRMDEYDMSSIEH-EALILVVA 59 (95)
Q Consensus 4 ~~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~~~~l~~-~~~vi~v~ 59 (95)
+.++-.++.-|++|++...-+.+..+.++|- +.++.+.+..-..|.+ .+.+|.+.
T Consensus 97 ~~~~dlvI~iS~SG~T~e~l~a~~~ak~~G~-a~viaIT~~~~S~La~~ad~~l~~~ 152 (368)
T 1moq_A 97 VRRNSLMITLSQSGETADTLAGLRLSKELGY-LGSLAICNVPGSSLVRESDLALMTN 152 (368)
T ss_dssp CCTTEEEEEEESSSCCHHHHHHHHHHTTTTC-SEEEEEESSTTCHHHHHSSEEEECC
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHcCC-CeEEEEECCCCChHHHhCCEEEEcC
Confidence 3455567888999999999888877777771 3334443322233433 34444433
No 166
>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12
Probab=33.83 E-value=54 Score=20.24 Aligned_cols=40 Identities=10% Similarity=0.044 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHH--hCCCceEEeeCCCCCcccccccCeEEEEeccC
Q psy8996 19 ANNYTTESEVHY--ANNYTTEVLRMDEYDMSSIEHEALILVVASTF 62 (95)
Q Consensus 19 ae~~A~~l~~~~--~~g~~~~v~~l~~~~~~~l~~~~~vi~v~ST~ 62 (95)
++.+++.+.+++ +++-++.++++.+.. .+ .+++|+++.+-
T Consensus 3 ~~~l~~~i~~al~dkKa~DI~vlDv~~~s--~~--~DyfVIatg~S 44 (125)
T 2o5a_A 3 NQELLQLAVNAVDDKKAEQVVALNMKGIS--LI--ADFFLICHGNS 44 (125)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEECBTTB--C----CEEEEEEESS
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEEcCCCC--cc--cCEEEEEEcCC
Confidence 356677776644 367788999887643 22 45666665543
No 167
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=33.55 E-value=76 Score=22.09 Aligned_cols=37 Identities=8% Similarity=-0.033 Sum_probs=24.8
Q ss_pred cccccccEEEeCCCchHHHHHHHHHHHHhCCCceEEe
Q psy8996 3 IVEKREPAFSISEVHYANNYTTESEVHYANNYTTEVL 39 (95)
Q Consensus 3 ~~~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~ 39 (95)
.+..|+|++.|.-+-+++...+..+.+.+.|.+.-+.
T Consensus 81 ~~~grvpviaGvg~~st~~ai~la~~A~~~Gadavlv 117 (304)
T 3cpr_A 81 EVGDRAKLIAGVGTNNTRTSVELAEAAASAGADGLLV 117 (304)
T ss_dssp HHTTTSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEE
T ss_pred HhCCCCcEEecCCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 4567889998887767777655555566677664433
No 168
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=33.45 E-value=61 Score=22.61 Aligned_cols=38 Identities=8% Similarity=-0.021 Sum_probs=25.1
Q ss_pred cccccccEEEeCCCchHHHHHHHHHHHHhCCCceEEee
Q psy8996 3 IVEKREPAFSISEVHYANNYTTESEVHYANNYTTEVLR 40 (95)
Q Consensus 3 ~~~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~ 40 (95)
.+..|+|++.|.-+-+++...+..+.+.+.|.+.-+.-
T Consensus 77 ~~~grvpViaGvg~~st~~ai~la~~A~~~Gadavlv~ 114 (306)
T 1o5k_A 77 IVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVV 114 (306)
T ss_dssp HHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HhCCCCeEEEcCCCccHHHHHHHHHHHHhcCCCEEEEC
Confidence 45678899998877777776555555656676654443
No 169
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=33.28 E-value=27 Score=23.72 Aligned_cols=60 Identities=8% Similarity=0.088 Sum_probs=34.6
Q ss_pred chHHHHHHHHHHHHhCCCceEEeeCC----CCC--cccccccCeEEEEec----------cCCCCCC-CCcHHHHHHHHh
Q psy8996 17 HYANNYTTESEVHYANNYTTEVLRMD----EYD--MSSIEHEALILVVAS----------TFGNGDP-PENGQEFAQNLH 79 (95)
Q Consensus 17 G~ae~~A~~l~~~~~~g~~~~v~~l~----~~~--~~~l~~~~~vi~v~S----------T~G~Ge~-Pdn~~~F~~~L~ 79 (95)
+.+..+.+.|+. .++++++.... .++ .+.|.++++||+.-. +|-+|++ |+....+-++..
T Consensus 40 ~~~~~l~~aL~~---~~~~v~~~~~~~~~~~fp~~~~~L~~yDvIIl~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~ 116 (256)
T 2gk3_A 40 EGATWLLECLRK---GGVDIDYMPAHTVQIAFPESIDELNRYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVK 116 (256)
T ss_dssp ESCHHHHHHHHH---TTCEEEEECHHHHHHCCCCSHHHHHTCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHH
T ss_pred ccHHHHHHHHHh---cCceEEEEecccchhhCCcChhHHhcCCEEEEeCCchhhcccccccccccccChHHHHHHHHHHH
Confidence 555555555543 58888887433 442 356888998887631 2234555 454555555554
No 170
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=33.22 E-value=76 Score=22.28 Aligned_cols=38 Identities=13% Similarity=0.073 Sum_probs=26.1
Q ss_pred ccccccccEEEeCCCchHHHHHHHHHHHHhCCCceEEe
Q psy8996 2 EIVEKREPAFSISEVHYANNYTTESEVHYANNYTTEVL 39 (95)
Q Consensus 2 ~~~~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~ 39 (95)
+.+..|+|++.|.-+-+++...+..+.+.+.|.+.-+.
T Consensus 86 ~~~~grvpViaGvg~~st~~ai~la~~A~~~Gadavlv 123 (315)
T 3si9_A 86 EQVAKRVPVVAGAGSNSTSEAVELAKHAEKAGADAVLV 123 (315)
T ss_dssp HHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 34567899999887777777666666666677665443
No 171
>1t5q_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=33.19 E-value=27 Score=16.38 Aligned_cols=11 Identities=36% Similarity=0.350 Sum_probs=7.7
Q ss_pred HHHHHHHHhhC
Q psy8996 71 GQEFAQNLHAL 81 (95)
Q Consensus 71 ~~~F~~~L~~~ 81 (95)
+++|.+||...
T Consensus 19 ak~fv~wLl~~ 29 (30)
T 1t5q_A 19 QQDFVNWLLAQ 29 (30)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHcC
Confidence 57788887653
No 172
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=33.13 E-value=96 Score=21.58 Aligned_cols=38 Identities=5% Similarity=-0.060 Sum_probs=25.0
Q ss_pred ccccccccEEEeCCCchHHHHHHHHHHHHhCCCceEEe
Q psy8996 2 EIVEKREPAFSISEVHYANNYTTESEVHYANNYTTEVL 39 (95)
Q Consensus 2 ~~~~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~ 39 (95)
+.+..|+|++-|.-+-+++...+..+.+.+.|.+.-+.
T Consensus 78 ~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv 115 (307)
T 3s5o_A 78 QAMPKNRLLLAGSGCESTQATVEMTVSMAQVGADAAMV 115 (307)
T ss_dssp HTSCTTSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHcCCCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 34567889998877666666555555566677665444
No 173
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=32.81 E-value=81 Score=21.86 Aligned_cols=37 Identities=0% Similarity=-0.104 Sum_probs=24.4
Q ss_pred cccc-cccEEEeCCCchHHHHHHHHHHHHhCCCceEEe
Q psy8996 3 IVEK-REPAFSISEVHYANNYTTESEVHYANNYTTEVL 39 (95)
Q Consensus 3 ~~~~-~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~ 39 (95)
.+.. |+|++.|.-+-+++...+..+.+.+.|.+.-+.
T Consensus 72 ~~~g~rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv 109 (301)
T 3m5v_A 72 TCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGADGILS 109 (301)
T ss_dssp HHTTSSCEEEEECCCSSHHHHHHHHHHHHHTTCSEEEE
T ss_pred HhCCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3455 789988877767776666555666677654433
No 174
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=32.27 E-value=61 Score=22.39 Aligned_cols=40 Identities=3% Similarity=-0.158 Sum_probs=25.9
Q ss_pred cccccccEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCC
Q psy8996 3 IVEKREPAFSISEVHYANNYTTESEVHYANNYTTEVLRMD 42 (95)
Q Consensus 3 ~~~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~ 42 (95)
.+..|+|++.|.-+-+++...+..+.+.+.|.+.-+.-..
T Consensus 69 ~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P 108 (293)
T 1f6k_A 69 EAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTP 108 (293)
T ss_dssp HHTTSSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred HhCCCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 4567889998887777777655555565667665444333
No 175
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=32.25 E-value=66 Score=22.16 Aligned_cols=37 Identities=8% Similarity=-0.049 Sum_probs=24.2
Q ss_pred cccccccEEEeCCCchHHHHHHHHHHHHhCCCceEEe
Q psy8996 3 IVEKREPAFSISEVHYANNYTTESEVHYANNYTTEVL 39 (95)
Q Consensus 3 ~~~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~ 39 (95)
.+..|+|++.|.-+-+++...+..+.+.+.|.+.-+.
T Consensus 65 ~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv 101 (289)
T 2yxg_A 65 VVNGRVQVIAGAGSNCTEEAIELSVFAEDVGADAVLS 101 (289)
T ss_dssp HHTTSSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEE
T ss_pred HhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 4566889998887767776555555555567664443
No 176
>4fbj_A CIF, hypothetical protein; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Photorhabdus luminescens subsp} PDB: 3gqj_A
Probab=32.23 E-value=2.4 Score=29.41 Aligned_cols=64 Identities=20% Similarity=0.284 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHh-CCCceEEeeCC--C---CCcccccccCeEEEEeccCCCCCCCCcHHHHHHHHhhCCCCC
Q psy8996 20 NNYTTESEVHYA-NNYTTEVLRMD--E---YDMSSIEHEALILVVASTFGNGDPPENGQEFAQNLHALRIGE 85 (95)
Q Consensus 20 e~~A~~l~~~~~-~g~~~~v~~l~--~---~~~~~l~~~~~vi~v~ST~G~Ge~Pdn~~~F~~~L~~~~~~~ 85 (95)
..+|+++..+-. ..|-+.|.+-. . +|.-...+.+...+.-|--|+|..|. .+|-+||.++....
T Consensus 108 ~~faE~l~~L~s~kNyV~~VNDgrLGH~flIDiPa~~~~r~ayiyQSDLG~Galp~--lr~eDWm~~rg~~p 177 (261)
T 4fbj_A 108 NEFAESVDQLSSAKNYVALVNDRRLGHMFLIDIPSNDQETVGYIYQSDLGQGALPP--LKIADWLNSRGKDA 177 (261)
T ss_dssp HHHHHHGGGSCTTCEEEEEEEETTTTEEEEEEECCCSSCCEEEEECCBCSCSSSCC--BCHHHHHHHGGGSE
T ss_pred HHHHHHHhhhhcccCEEEEEcCCCcceeEEEecCCCCCCcceEEEecccCCCCCcc--eeHHHHHhhcCCCC
Confidence 678888866433 23333333211 1 01112234667888899999999886 67889998765433
No 177
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=31.94 E-value=68 Score=22.10 Aligned_cols=36 Identities=8% Similarity=0.068 Sum_probs=22.6
Q ss_pred cccccccEEEeCCCchHHHHHHHHHHHHhCCCceEE
Q psy8996 3 IVEKREPAFSISEVHYANNYTTESEVHYANNYTTEV 38 (95)
Q Consensus 3 ~~~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v 38 (95)
.+..|+|++.|.-+-+++...+..+.+.+.|.+.-+
T Consensus 66 ~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavl 101 (291)
T 3tak_A 66 VANKRIPIIAGTGANSTREAIELTKAAKDLGADAAL 101 (291)
T ss_dssp HHTTSSCEEEECCCSSHHHHHHHHHHHHHHTCSEEE
T ss_pred HhCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 456778888887766666655555555555655433
No 178
>3lap_A Arginine repressor; arginine repressor, DNA binding, DNA-canavanine ternary complex; HET: GGB; 2.15A {Mycobacterium tuberculosis} PDB: 3fhz_A* 3ere_D* 3laj_A*
Probab=31.93 E-value=1e+02 Score=19.92 Aligned_cols=50 Identities=22% Similarity=0.298 Sum_probs=30.6
Q ss_pred CCCchHHHHHHHHHHHHhCCCceEEeeCCCCCcccccccCeEEEEeccCCCCCCCCcHHHHHHHHhh
Q psy8996 14 SEVHYANNYTTESEVHYANNYTTEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFAQNLHA 80 (95)
Q Consensus 14 S~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~~~~l~~~~~vi~v~ST~G~Ge~Pdn~~~F~~~L~~ 80 (95)
|.-|+|..+|..|-... ++ .+ +..+.+.|.++++|.+ ++++..+.++|.+
T Consensus 119 T~PG~A~~vA~~iD~~~---~~-eI-------lGTIAGDDTIlVi~r~------~~~a~~l~~~l~~ 168 (170)
T 3lap_A 119 TPPGAAHYLASAIDRAA---LP-QV-------VGTIAGDDTILVVARE------PTTGAQLAGMFEN 168 (170)
T ss_dssp CSTTCHHHHHHHHHHHT---CT-TE-------EEEEECSSEEEEEECT------TCCHHHHHHHHHH
T ss_pred eCCCcHHHHHHHHHhCC---CC-Ce-------EEEEecCCEEEEEeCC------HHHHHHHHHHHHh
Confidence 56677777776664431 11 11 2345677777777765 3677888887764
No 179
>3som_A Methylmalonic aciduria and homocystinuria type C; structural genomics, structural genomics consortium, SGC, CB organic aciduria; HET: MSE B12 FLC 5AD; 2.40A {Homo sapiens}
Probab=31.89 E-value=16 Score=25.97 Aligned_cols=64 Identities=14% Similarity=0.079 Sum_probs=37.9
Q ss_pred EeCCCchHHHHHHHHHH-HHhCCCceEEeeCCCCCc---c--ccc--ccCeEEEEeccCCCCCCCCcHH-HHHHHHhhC
Q psy8996 12 SISEVHYANNYTTESEV-HYANNYTTEVLRMDEYDM---S--SIE--HEALILVVASTFGNGDPPENGQ-EFAQNLHAL 81 (95)
Q Consensus 12 ygS~tG~ae~~A~~l~~-~~~~g~~~~v~~l~~~~~---~--~l~--~~~~vi~v~ST~G~Ge~Pdn~~-~F~~~L~~~ 81 (95)
|-|.+-+++.+-..|++ +...||++.-+.+..|+. . .|+ +..+.++|-|| |.-++ .|..||++.
T Consensus 2 ~~~~~~~~~~l~~~L~~~L~~~GFEv~PFkVgwYN~~v~~~f~Lp~~~dTLA~lVlsT------P~mFe~aFkpfl~~~ 74 (286)
T 3som_A 2 FQSMEPKVAELKQKIEDTLCPFGFEVYPFQVAWYNELLPPAFHLPLPGPTLAFLVLST------PAMFDRALKPFLQSC 74 (286)
T ss_dssp ------CHHHHHHHHHHHHGGGTEEEEEEEHHHHHTTSCGGGCCSSCTTEEEEEEEEC------TTHHHHTHHHHTTST
T ss_pred chhhhhhHHHHHHHHHhhhccCCeeeeecccHHHHHhchhhccCCCCCCcEEEEEecC------HHHHHHHHHHHHHhh
Confidence 56778888999999987 446899987777665541 1 233 33466666666 45554 566777553
No 180
>2qne_A Putative methyltransferase; ZP_00558420.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Desulfitobacterium hafniense}
Probab=31.47 E-value=14 Score=28.17 Aligned_cols=13 Identities=15% Similarity=0.174 Sum_probs=11.6
Q ss_pred ccccccccEEEeC
Q psy8996 2 EIVEKREPAFSIS 14 (95)
Q Consensus 2 ~~~~~~~~~~ygS 14 (95)
|+|+++.|++||+
T Consensus 278 Qli~PGaPviyG~ 290 (495)
T 2qne_A 278 QSINPGTPVIYGS 290 (495)
T ss_dssp HHHSTTCCEEEEE
T ss_pred HhcCCCCCEEECC
Confidence 6799999999984
No 181
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=31.23 E-value=53 Score=23.14 Aligned_cols=37 Identities=8% Similarity=-0.036 Sum_probs=25.2
Q ss_pred cccccccEEEeCCCchHHHHHHHHHHHHhCCCceEEe
Q psy8996 3 IVEKREPAFSISEVHYANNYTTESEVHYANNYTTEVL 39 (95)
Q Consensus 3 ~~~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~ 39 (95)
.+..|+|++.|.-+-+++...+..+.+.+.|.+.-+.
T Consensus 76 ~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv 112 (318)
T 3qfe_A 76 AVGPDFPIMAGVGAHSTRQVLEHINDASVAGANYVLV 112 (318)
T ss_dssp HHCTTSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEE
T ss_pred HhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 4567899999987767777666555566667664443
No 182
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=30.63 E-value=69 Score=22.23 Aligned_cols=42 Identities=7% Similarity=-0.018 Sum_probs=27.1
Q ss_pred cccccccEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCCCC
Q psy8996 3 IVEKREPAFSISEVHYANNYTTESEVHYANNYTTEVLRMDEY 44 (95)
Q Consensus 3 ~~~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~ 44 (95)
.+..|+|++.|.-+-+++...+..+.+.+.|.+.-+.-..-|
T Consensus 65 ~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 106 (297)
T 2rfg_A 65 QAQGRVPVIAGAGSNNPVEAVRYAQHAQQAGADAVLCVAGYY 106 (297)
T ss_dssp HHTTSSCBEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCTT
T ss_pred HhCCCCeEEEccCCCCHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 456789999998777777765555556666766544433333
No 183
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=30.56 E-value=46 Score=21.44 Aligned_cols=75 Identities=8% Similarity=0.053 Sum_probs=34.5
Q ss_pred ccccccEEEeCCCchHHHHHHHHHH-HHhCCCceEEeeCCC-CC-cccc----cccCeEEEEeccCCCCCCCCcHHHHHH
Q psy8996 4 VEKREPAFSISEVHYANNYTTESEV-HYANNYTTEVLRMDE-YD-MSSI----EHEALILVVASTFGNGDPPENGQEFAQ 76 (95)
Q Consensus 4 ~~~~~~~~ygS~tG~ae~~A~~l~~-~~~~g~~~~v~~l~~-~~-~~~l----~~~~~vi~v~ST~G~Ge~Pdn~~~F~~ 76 (95)
.-+|.|-.||++ |=+++-+.+.+ +.+.|+.+++..-+. -. ++.+ .+.+.+|+=- |-..-......+
T Consensus 18 LG~REP~iYG~~--Tl~di~~~l~~~a~~~g~~v~~~QSN~EgeLId~Ih~a~~~~dgiiINp-----gA~THtSvAlrD 90 (151)
T 3u80_A 18 LGVRQPDVYGRQ--DLDTLRKLCAEWGKDLGLEVEVRQTDDEAEMVRWMHQAADEKTPVVMNP-----AAFTHYSYALAD 90 (151)
T ss_dssp ----------CH--HHHHHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHHHHHTCCEEEEC-----TTCCSCCHHHHH
T ss_pred cCCCCCCcCCCC--CHHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCcEEEECc-----chhhhhhHHHHH
Confidence 457889999998 56677777765 556787777665542 00 1111 2345555532 333445556666
Q ss_pred H---HhhCCCCC
Q psy8996 77 N---LHALRIGE 85 (95)
Q Consensus 77 ~---L~~~~~~~ 85 (95)
. |.....|-
T Consensus 91 Al~~l~~~~~P~ 102 (151)
T 3u80_A 91 AAHMVIDENLPL 102 (151)
T ss_dssp HHHHHHHTTCCE
T ss_pred HHHHHhhcCCCE
Confidence 6 44445553
No 184
>3a9s_A D-arabinose isomerase; rossmann fold, beta barrel, carbohydrate metabolism, cytoplasm, fucose metabolism, manganese, metal- binding; 1.60A {Geobacillus pallidus} PDB: 3a9r_A 3a9t_A*
Probab=30.30 E-value=56 Score=25.53 Aligned_cols=49 Identities=14% Similarity=0.144 Sum_probs=28.2
Q ss_pred chHHHHHHHHHHHHh--CCCceEEeeCCCC--Cccc-------cc--ccCeEEEEeccCCCC
Q psy8996 17 HYANNYTTESEVHYA--NNYTTEVLRMDEY--DMSS-------IE--HEALILVVASTFGNG 65 (95)
Q Consensus 17 G~ae~~A~~l~~~~~--~g~~~~v~~l~~~--~~~~-------l~--~~~~vi~v~ST~G~G 65 (95)
+-++.+|++|.+.++ .|..++++..+.+ ++++ +. +-+.+|+++.||+.|
T Consensus 37 ~~a~~~~~~l~~~l~~~~g~~vevV~~~~~I~~~~eA~~~ae~F~~~~vd~ii~~~~~w~yg 98 (595)
T 3a9s_A 37 NMAKAVAKLLEENVFYYNGQPVECVIADTCIGGVKEAAEAAEKFAREGVGVSITVTPCWCYG 98 (595)
T ss_dssp HHHHHHHHHHHHHCBCTTSCBCCEEECSSCBCSHHHHHHHHHHHHHHTEEEEEEEESSCCCG
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEEECCCeeCCHHHHHHHHHHHHHcCCCEEEEEeccCCCH
Confidence 345556666655443 3556777777632 1111 22 335778888998776
No 185
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=30.20 E-value=65 Score=22.22 Aligned_cols=37 Identities=5% Similarity=0.048 Sum_probs=23.6
Q ss_pred cccccccEEEeCCCchHHHHHHHHHHHHhCCCceEEe
Q psy8996 3 IVEKREPAFSISEVHYANNYTTESEVHYANNYTTEVL 39 (95)
Q Consensus 3 ~~~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~ 39 (95)
.+..|+|++.|.-+-+++...+..+.+.+.|.+.-+.
T Consensus 66 ~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv 102 (292)
T 2ojp_A 66 LADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLT 102 (292)
T ss_dssp HHTTSSCEEEECCCSSHHHHHHHHHHTTTSSCSEEEE
T ss_pred HhCCCCcEEEecCCccHHHHHHHHHHHHhcCCCEEEE
Confidence 4566888888887766666555445555566654433
No 186
>3soz_A ORF 245 protein, cytoplasmic protein STM1381; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.60A {Salmonella enterica subsp}
Probab=30.16 E-value=28 Score=23.92 Aligned_cols=57 Identities=14% Similarity=0.098 Sum_probs=34.0
Q ss_pred HHHHHHH-hCCCceEEeeCCC----C--CcccccccCeEEEEecc----------CCCCCC-CCcHHHHHHHHhh
Q psy8996 24 TESEVHY-ANNYTTEVLRMDE----Y--DMSSIEHEALILVVAST----------FGNGDP-PENGQEFAQNLHA 80 (95)
Q Consensus 24 ~~l~~~~-~~g~~~~v~~l~~----~--~~~~l~~~~~vi~v~ST----------~G~Ge~-Pdn~~~F~~~L~~ 80 (95)
..|.+++ ..+++|+.++.++ + +.+.|.++++||+.-.. |-+++. |+..+...+|..+
T Consensus 36 ~~~~~aL~~~~~~V~~i~~~~~~~~fP~~~~~L~~yDvIIl~d~~~~~~l~~~~~~~~~~~~~~~~~~l~~~V~~ 110 (248)
T 3soz_A 36 DYLLSCLRQGNIDVDYMPAHIVQTRFPQTAEALACYDAIVISDIGSNTFLLQNRTFYNMDIIPDALQLIADYVAE 110 (248)
T ss_dssp HHHHHHHTTTTCEEEEEETTHHHHSCCCSHHHHHTCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHHT
T ss_pred HHHHHHHhcCCceeEEeCchhhhhhCCCChHHHhcCCEEEEcCCCcchhccCccccccccCCHHHHHHHHHHHHh
Confidence 3444444 4789999888753 2 34667889988875221 223443 5556666666654
No 187
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=30.09 E-value=70 Score=22.27 Aligned_cols=37 Identities=0% Similarity=-0.145 Sum_probs=23.9
Q ss_pred cccccccEEEeCCCchHHHHHHHHHHHHhCCCceEEe
Q psy8996 3 IVEKREPAFSISEVHYANNYTTESEVHYANNYTTEVL 39 (95)
Q Consensus 3 ~~~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~ 39 (95)
.+..|+|++.|.-+-+++...+..+.+.+.|.+.-+.
T Consensus 76 ~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv 112 (303)
T 2wkj_A 76 EAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSA 112 (303)
T ss_dssp HHTTTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEE
T ss_pred HhCCCCcEEEecCCCCHHHHHHHHHHHHhCCCCEEEe
Confidence 4566889998887766666555555555567654433
No 188
>3t66_A Nickel ABC transporter (nickel-binding protein); structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Bacillus halodurans}
Probab=30.04 E-value=1.6e+02 Score=21.46 Aligned_cols=32 Identities=3% Similarity=-0.104 Sum_probs=22.7
Q ss_pred EeCCCchHHHHHHHHHH-HHhCCCceEEeeCCC
Q psy8996 12 SISEVHYANNYTTESEV-HYANNYTTEVLRMDE 43 (95)
Q Consensus 12 ygS~tG~ae~~A~~l~~-~~~~g~~~~v~~l~~ 43 (95)
+.+.....+.+|+.|++ +.+.|+++++..++.
T Consensus 336 ~~~~~~~~~~~a~~i~~~l~~iGI~v~i~~~~~ 368 (496)
T 3t66_A 336 TYGSRAELPLIAQVFQSNAKQIGIEVEIRQIEV 368 (496)
T ss_dssp ECSSSTTHHHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred ecCCCccHHHHHHHHHHHHHhcCCEEEEEEecc
Confidence 33333445778888876 556899999988874
No 189
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=29.93 E-value=1e+02 Score=19.90 Aligned_cols=34 Identities=3% Similarity=-0.112 Sum_probs=27.3
Q ss_pred cccEEEeC-CCchHHHHHHHHHHHHhCCCceEEee
Q psy8996 7 REPAFSIS-EVHYANNYTTESEVHYANNYTTEVLR 40 (95)
Q Consensus 7 ~~~~~ygS-~tG~ae~~A~~l~~~~~~g~~~~v~~ 40 (95)
++-++||. -+|-|..+...+.++..+|..+-++.
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 46788898 99999998877777777888877764
No 190
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=29.62 E-value=58 Score=22.81 Aligned_cols=36 Identities=3% Similarity=-0.140 Sum_probs=25.0
Q ss_pred cccccccEEEeCCCchHHHHHHHHHHHHhCCCceEEe
Q psy8996 3 IVEKREPAFSISEVHYANNYTTESEVHYANNYTTEVL 39 (95)
Q Consensus 3 ~~~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~ 39 (95)
.+ .|+|++.|.-+.+++...+..+.+.+.|.+.-+.
T Consensus 73 ~~-grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv 108 (313)
T 3dz1_A 73 RA-KSMQVIVGVSAPGFAAMRRLARLSMDAGAAGVMI 108 (313)
T ss_dssp HC-TTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEE
T ss_pred Hc-CCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 45 6899999988777777666655666667664433
No 191
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=29.29 E-value=78 Score=21.01 Aligned_cols=48 Identities=13% Similarity=0.154 Sum_probs=26.9
Q ss_pred cEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCCCCC--cccccccCeEEEEe
Q psy8996 9 PAFSISEVHYANNYTTESEVHYANNYTTEVLRMDEYD--MSSIEHEALILVVA 59 (95)
Q Consensus 9 ~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~--~~~l~~~~~vi~v~ 59 (95)
-++--+..+|...+.+.++ +.|.++.+...++.+ ++.+...+.+|+--
T Consensus 16 ~~i~~~~~~~~~~i~~~l~---~~G~~v~v~~~~~~~~~~~~l~~~Dglil~G 65 (239)
T 1o1y_A 16 LAIRHVEIEDLGMMEDIFR---EKNWSFDYLDTPKGEKLERPLEEYSLVVLLG 65 (239)
T ss_dssp EEECSSTTSSCTHHHHHHH---HTTCEEEEECGGGTCCCSSCGGGCSEEEECC
T ss_pred EEEECCCCCCchHHHHHHH---hCCCcEEEeCCcCccccccchhcCCEEEECC
Confidence 3444455666666655443 357777766554322 34566777777644
No 192
>3o6q_A Stage II sporulation protein SA; GAF domain, toxin-antitoxin, toxin - antitoxin toxin-antitoxin complex; HET: MSE; 2.50A {Bacillus subtilis}
Probab=29.08 E-value=55 Score=21.14 Aligned_cols=35 Identities=14% Similarity=0.003 Sum_probs=26.7
Q ss_pred ccEEEeCCCchHHHHHHHHHH-HHhCCCceEEeeCC
Q psy8996 8 EPAFSISEVHYANNYTTESEV-HYANNYTTEVLRMD 42 (95)
Q Consensus 8 ~~~~ygS~tG~ae~~A~~l~~-~~~~g~~~~v~~l~ 42 (95)
+-+.|||+++-++.+-+-|+. +-+...++.+++-.
T Consensus 38 I~vyygs~eaY~~Gi~~lL~~yaeK~~i~asl~~fs 73 (157)
T 3o6q_A 38 IHVYYGSIDAYAEGIDKLLKTYADKMNLTASLCHYS 73 (157)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHTTTSEEEEEECS
T ss_pred eEEEeccHHHHHHHHHHHHHHHHHhcCceeeeccCC
Confidence 457899999999999888876 44567777777654
No 193
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=29.03 E-value=77 Score=22.58 Aligned_cols=37 Identities=16% Similarity=0.049 Sum_probs=24.4
Q ss_pred cccccccEEEeCCCchHHHHHHHHHHHHhCCCceEEe
Q psy8996 3 IVEKREPAFSISEVHYANNYTTESEVHYANNYTTEVL 39 (95)
Q Consensus 3 ~~~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~ 39 (95)
.+..|+|++.|.-+-+++...+..+.+.+.|.+.-+.
T Consensus 96 ~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv 132 (343)
T 2v9d_A 96 HVDRRVPVLIGTGGTNARETIELSQHAQQAGADGIVV 132 (343)
T ss_dssp HHTTSSCEEEECCSSCHHHHHHHHHHHHHHTCSEEEE
T ss_pred HhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 4567889998887777777655555555667664433
No 194
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=28.96 E-value=40 Score=22.25 Aligned_cols=37 Identities=11% Similarity=-0.008 Sum_probs=26.7
Q ss_pred cccccEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCCC
Q psy8996 5 EKREPAFSISEVHYANNYTTESEVHYANNYTTEVLRMDE 43 (95)
Q Consensus 5 ~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~ 43 (95)
.++=.++.-|.+|++..+-+.+..+.++|.. ++.+.+
T Consensus 107 ~~~Dv~I~iS~SG~t~~~i~~~~~Ak~~G~~--vI~IT~ 143 (243)
T 3cvj_A 107 TNKDVIMIISNSGRNTVPVEMAIESRNIGAK--VIAMTS 143 (243)
T ss_dssp CTTCEEEEECSSCCSHHHHHHHHHHHHHTCE--EEEEEC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCE--EEEEeC
Confidence 4455677889999999998877777777754 444443
No 195
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=28.87 E-value=59 Score=19.00 Aligned_cols=34 Identities=9% Similarity=-0.073 Sum_probs=25.5
Q ss_pred ccccEEEeCCCchHHHHHHHHHHHHhCCCceEEe
Q psy8996 6 KREPAFSISEVHYANNYTTESEVHYANNYTTEVL 39 (95)
Q Consensus 6 ~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~ 39 (95)
...|.+.-..+|..+.+.+.++.+..++..+++.
T Consensus 62 ~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl 95 (106)
T 3dhx_A 62 VKFGIMLTEMHGTQQDTQAAIAWLQEHHVKVEVL 95 (106)
T ss_dssp EEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred eeEEEEEEEEeCCHHHHHHHHHHHHHCCCEEEEe
Confidence 3456666677899888888888888888877654
No 196
>4f8c_A Cycle inhibiting factor; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.95A {Yersinia pseudotuberculosis}
Probab=28.67 E-value=17 Score=25.28 Aligned_cols=72 Identities=11% Similarity=0.013 Sum_probs=43.6
Q ss_pred CCchHHHHHHHHHHHHh-CCCceEEeeCC--CCCcccc----cccCeEEEEeccCCCCCCCCcHHHHHHHHhhCCCCCcc
Q psy8996 15 EVHYANNYTTESEVHYA-NNYTTEVLRMD--EYDMSSI----EHEALILVVASTFGNGDPPENGQEFAQNLHALRIGEDA 87 (95)
Q Consensus 15 ~tG~ae~~A~~l~~~~~-~g~~~~v~~l~--~~~~~~l----~~~~~vi~v~ST~G~Ge~Pdn~~~F~~~L~~~~~~~~~ 87 (95)
||=+-..+|+++..+-. ..|-+.|.+-. ..-.-++ ...+...+.-|--|+|..|. .+|-+||.++....-.
T Consensus 129 Qtl~~~~faE~l~~L~s~KnyV~~VNDgrLGH~flIDiPa~~n~~r~ayiyQSDLG~Galp~--lr~eDWmt~rg~~pIs 206 (275)
T 4f8c_A 129 QSLSLSQLQERLASLPAHKNFILRVNDGGLGHAYVIDFPATTNPSRDAFLYQSDLGEGVTRE--VRFEDWMTQKASHPIS 206 (275)
T ss_dssp CCBCHHHHHHHHHTCCTTSEEEEEEEETTTTEEEEEEECCCSSSSCEEEEECCBCCCSSSCC--BCHHHHHHHTTTSCEE
T ss_pred ccccHHHHHHHHhhhhcccCEEEEEcCCCcceeEEEecCCCCCCCcceEEEecccCCCCCcc--eeHHHHHhhcCCCCcc
Confidence 55566778888876543 33433333221 1001122 34567788889999999886 6788999886654433
Q ss_pred c
Q psy8996 88 N 88 (95)
Q Consensus 88 l 88 (95)
|
T Consensus 207 L 207 (275)
T 4f8c_A 207 L 207 (275)
T ss_dssp H
T ss_pred H
Confidence 3
No 197
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=28.38 E-value=51 Score=23.12 Aligned_cols=37 Identities=11% Similarity=-0.023 Sum_probs=24.5
Q ss_pred ccccccccEEEeCCCchHHHHHHHHHHHHhCCCceEEe
Q psy8996 2 EIVEKREPAFSISEVHYANNYTTESEVHYANNYTTEVL 39 (95)
Q Consensus 2 ~~~~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~ 39 (95)
+.+..|+|++.|.-+ +++...+..+.+.+.|.+.-+.
T Consensus 76 ~~~~grvpViaGvg~-~t~~ai~la~~A~~~Gadavlv 112 (316)
T 3e96_A 76 EYVHGRALVVAGIGY-ATSTAIELGNAAKAAGADAVMI 112 (316)
T ss_dssp HHHTTSSEEEEEECS-SHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHhCCCCcEEEEeCc-CHHHHHHHHHHHHhcCCCEEEE
Confidence 345678999999765 6666555555566667765444
No 198
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=27.80 E-value=53 Score=24.80 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=17.1
Q ss_pred ccccEEEeCCCchHHHHHHHHHH
Q psy8996 6 KREPAFSISEVHYANNYTTESEV 28 (95)
Q Consensus 6 ~~~~~~ygS~tG~ae~~A~~l~~ 28 (95)
-|++||-|+.+|.+.-++ +|+.
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~-~Ia~ 174 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIAL-QIAR 174 (469)
T ss_dssp CBCCEEECTTSCHHHHHH-HHHH
T ss_pred CEEEEECCCCCCHHHHHH-HHHH
Confidence 367999999999997654 5654
No 199
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=27.69 E-value=80 Score=22.89 Aligned_cols=37 Identities=5% Similarity=-0.016 Sum_probs=23.1
Q ss_pred cccccccEEEeCCCchHHHHHHHHHHHHhCCCceEEe
Q psy8996 3 IVEKREPAFSISEVHYANNYTTESEVHYANNYTTEVL 39 (95)
Q Consensus 3 ~~~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~ 39 (95)
.+..|+|++-|.-+-+++...+..+.+.+.|.+.-+.
T Consensus 124 ~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv 160 (360)
T 4dpp_A 124 CFGGSIKVIGNTGSNSTREAIHATEQGFAVGMHAALH 160 (360)
T ss_dssp HHTTTSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEE
T ss_pred HhCCCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3556788888876666666555555566667654333
No 200
>3efy_A CIF (cell cycle inhibiting factor); bacteria, virulence factor, type III secretion, E. coli, plasmid; 1.70A {Escherichia coli}
Probab=27.62 E-value=13 Score=24.61 Aligned_cols=72 Identities=8% Similarity=0.019 Sum_probs=42.9
Q ss_pred CCchHHHHHHHHHHHHh-CCCceEEeeCC--CCCcccc----cccCeEEEEeccCCCCCCCCcHHHHHHHHhhCCCCCcc
Q psy8996 15 EVHYANNYTTESEVHYA-NNYTTEVLRMD--EYDMSSI----EHEALILVVASTFGNGDPPENGQEFAQNLHALRIGEDA 87 (95)
Q Consensus 15 ~tG~ae~~A~~l~~~~~-~g~~~~v~~l~--~~~~~~l----~~~~~vi~v~ST~G~Ge~Pdn~~~F~~~L~~~~~~~~~ 87 (95)
||=+-..+|+++..+-. ..|-+.|.+-. ..-.-++ ...+...+.-|--|+|..|. .+|-+||.++....-.
T Consensus 35 Qtl~~~~faE~l~~l~s~knyV~~VNDgrLGH~fliDiP~~~n~~r~ayiyQSDLG~galp~--lr~eDWm~~rg~~pis 112 (195)
T 3efy_A 35 QTLSLEQLQERLSCMPECKSFVLRVNDGALGHAYIVDIPKGENSCRPAFLYQSDLGEGVTRK--LRFEDWMTHKALTPIL 112 (195)
T ss_dssp CCBCHHHHHHHHHTCCTTSEEEEEEEETTTTEEEEEEECSCCSTTCEEEEECCBCSSSSSCC--BCHHHHHTTGGGSCEE
T ss_pred ccccHHHHHHHHhhhhcccCEEEEEcCCCcceeEEEecCCCCCCCcceEEEecccCCccccc--eeHHHHHhhcCCCCcc
Confidence 55566778888876543 33433333221 1001122 24567778889999999886 6788999876544333
Q ss_pred c
Q psy8996 88 N 88 (95)
Q Consensus 88 l 88 (95)
|
T Consensus 113 l 113 (195)
T 3efy_A 113 L 113 (195)
T ss_dssp H
T ss_pred H
Confidence 3
No 201
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=27.61 E-value=82 Score=22.06 Aligned_cols=37 Identities=8% Similarity=0.155 Sum_probs=19.0
Q ss_pred cccEEEeCCCchHHHHHHHH----HHHHhCCCceEEeeCCC
Q psy8996 7 REPAFSISEVHYANNYTTES----EVHYANNYTTEVLRMDE 43 (95)
Q Consensus 7 ~~~~~ygS~tG~ae~~A~~l----~~~~~~g~~~~v~~l~~ 43 (95)
++|+||+++..=.-.+-.++ ++.+..+|+++++++..
T Consensus 136 ~~~~~~a~N~SiGv~ll~~l~~~aa~~l~~~~dieIiE~HH 176 (288)
T 3ijp_A 136 YTTIVKSGNMSLGVNLLANLVKRAAKALDDDFDIEIYEMHH 176 (288)
T ss_dssp TSEEEECSCCCHHHHHHHHHHHHHHHHSCTTSEEEEEEEEC
T ss_pred cCCEEEECCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEccC
Confidence 35677766665544443333 22222355666666554
No 202
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=27.48 E-value=73 Score=22.56 Aligned_cols=40 Identities=10% Similarity=-0.045 Sum_probs=25.7
Q ss_pred cccccccEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCC
Q psy8996 3 IVEKREPAFSISEVHYANNYTTESEVHYANNYTTEVLRMD 42 (95)
Q Consensus 3 ~~~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~ 42 (95)
.+..|+|++.|.-+-+++...+..+.+.+.|.+.-+.-..
T Consensus 99 ~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P 138 (332)
T 2r8w_A 99 ILRGRRTLMAGIGALRTDEAVALAKDAEAAGADALLLAPV 138 (332)
T ss_dssp HHTTSSEEEEEECCSSHHHHHHHHHHHHHHTCSEEEECCC
T ss_pred HhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 4567889999887767766555555555667665444333
No 203
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=27.45 E-value=40 Score=23.47 Aligned_cols=37 Identities=5% Similarity=-0.001 Sum_probs=24.7
Q ss_pred cccccccEEEeCCCchHHHHHHHHHHHHhCCCceEEe
Q psy8996 3 IVEKREPAFSISEVHYANNYTTESEVHYANNYTTEVL 39 (95)
Q Consensus 3 ~~~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~ 39 (95)
.+..|+|++.|.-+-+++...+..+.+.+.|.+.-+.
T Consensus 69 ~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv 105 (300)
T 3eb2_A 69 AAQRRVPVVAGVASTSVADAVAQAKLYEKLGADGILA 105 (300)
T ss_dssp HHTTSSCBEEEEEESSHHHHHHHHHHHHHHTCSEEEE
T ss_pred HhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 4567899999877667777666555565667664433
No 204
>2g49_C Glucagon preproprotein; protein-peptide complex, hydrolase; 2.50A {Homo sapiens} PDB: 1kx6_A 1gcn_A 1bh0_A 1nau_A
Probab=27.21 E-value=32 Score=16.01 Aligned_cols=10 Identities=40% Similarity=0.484 Sum_probs=6.6
Q ss_pred HHHHHHHHhh
Q psy8996 71 GQEFAQNLHA 80 (95)
Q Consensus 71 ~~~F~~~L~~ 80 (95)
+++|.+||..
T Consensus 19 ak~fv~wL~~ 28 (29)
T 2g49_C 19 AQDFVQWLMN 28 (29)
T ss_pred HHHHHHHHhc
Confidence 5677777753
No 205
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=27.04 E-value=24 Score=24.27 Aligned_cols=53 Identities=13% Similarity=0.153 Sum_probs=30.0
Q ss_pred chHHHHHHHHHHHH-hCCCceEEeeCCCCCcc------------cccccCeEEEEeccCCC-CCC-CCcHH
Q psy8996 17 HYANNYTTESEVHY-ANNYTTEVLRMDEYDMS------------SIEHEALILVVASTFGN-GDP-PENGQ 72 (95)
Q Consensus 17 G~ae~~A~~l~~~~-~~g~~~~v~~l~~~~~~------------~l~~~~~vi~v~ST~G~-Ge~-Pdn~~ 72 (95)
|+..+ |+.|++.+ ..||+|.+.. +.+.. +..+.+.++++..+||. |-. |.+..
T Consensus 41 G~~~D-~~~L~~~f~~LGF~V~~~~--dlt~~em~~~l~~~~~~~h~~~d~~v~~~lsHG~~g~i~~~D~~ 108 (259)
T 3sir_A 41 GTNVD-CENLTRVLKQLDFEVTVYK--DCRYKDILRTIEYSASQNHSDSDCILVAILSHGEMGYIYAKDTQ 108 (259)
T ss_dssp --CCH-HHHHHHHHHHTTCEEEEEE--ECSHHHHHHHHHHHHTSCCTTEEEEEEEEEECTTCCCCCCTTHH
T ss_pred CcHHH-HHHHHHHHHHCCCEEEEEe--CCCHHHHHHHHHHHHHhhccCCCEEEEEEecCCCCCeEEeCCCc
Confidence 44344 56777655 5899887653 23222 23455678888888987 322 55544
No 206
>2l63_A GLP-2, glucagon-like peptide 2; hormone, GPCR, docking, small bowel syndrome; NMR {Homo sapiens} PDB: 2l64_A
Probab=26.88 E-value=40 Score=16.14 Aligned_cols=11 Identities=18% Similarity=0.253 Sum_probs=8.9
Q ss_pred HHHHHHHHhhC
Q psy8996 71 GQEFAQNLHAL 81 (95)
Q Consensus 71 ~~~F~~~L~~~ 81 (95)
+++|.+||...
T Consensus 19 ak~fl~wL~~~ 29 (33)
T 2l63_A 19 ARDFINWLIQT 29 (33)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHcC
Confidence 68899999864
No 207
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=26.33 E-value=1.6e+02 Score=20.57 Aligned_cols=32 Identities=9% Similarity=-0.063 Sum_probs=21.2
Q ss_pred cccccccEEEeCCCchHHHHHHHHHHHHhCCC
Q psy8996 3 IVEKREPAFSISEVHYANNYTTESEVHYANNY 34 (95)
Q Consensus 3 ~~~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~ 34 (95)
.+..|+|++.|.-+-+++...+..+.+.+.|.
T Consensus 72 ~~~grvpViaGvg~~~t~~ai~la~~A~~~Ga 103 (311)
T 3h5d_A 72 VVNGRVPLIAGVGTNDTRDSIEFVKEVAEFGG 103 (311)
T ss_dssp HSCSSSCEEEECCCSSHHHHHHHHHHHHHSCC
T ss_pred HhCCCCcEEEeCCCcCHHHHHHHHHHHHhcCC
Confidence 45678889888777667665555555555553
No 208
>1div_A Ribosomal protein L9; rRNA-binding; 2.60A {Geobacillus stearothermophilus} SCOP: d.99.1.1 d.100.1.1 PDB: 1giy_K 1yl3_K 2b66_I 2b9n_I 2b9p_I 487d_K
Probab=26.21 E-value=47 Score=21.13 Aligned_cols=19 Identities=5% Similarity=-0.076 Sum_probs=14.5
Q ss_pred cEEEeCCCchHHHHHHHHHHH
Q psy8996 9 PAFSISEVHYANNYTTESEVH 29 (95)
Q Consensus 9 ~~~ygS~tG~ae~~A~~l~~~ 29 (95)
+-+|||.| ++++|+.|.+.
T Consensus 87 gklfGSVt--~~dIa~al~~~ 105 (149)
T 1div_A 87 GRLFGSIT--SKQIAESLQAQ 105 (149)
T ss_dssp GEEEEEEC--HHHHHHHHHHH
T ss_pred CcEEeecC--HHHHHHHHHHh
Confidence 56899876 78888888654
No 209
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=26.15 E-value=64 Score=21.00 Aligned_cols=33 Identities=9% Similarity=0.041 Sum_probs=23.0
Q ss_pred cccccEEEeCCCchHHHHHHHHHHHH--hCCCceEEe
Q psy8996 5 EKREPAFSISEVHYANNYTTESEVHY--ANNYTTEVL 39 (95)
Q Consensus 5 ~~~~~~~ygS~tG~ae~~A~~l~~~~--~~g~~~~v~ 39 (95)
.++ .++|-|.- ..+.++++|++++ ..||++.++
T Consensus 44 ~SG-NvvF~s~~-~~~~l~~~ie~~l~~~fg~~v~v~ 78 (183)
T 2hiy_A 44 NSG-NIFFTSID-SKAQLVEKLETFFAVHYPFIQSFS 78 (183)
T ss_dssp TTT-EEEEEECS-CHHHHHHHHHHHHHHHCTTCCCCE
T ss_pred ecC-CEEEecCC-CHHHHHHHHHHHHHHhcCCCCCEE
Confidence 345 57777766 7788999998754 378775543
No 210
>3iol_B Glucagon; receptor-ligand complex, cell membrane, disulfide bond, G-PR coupled receptor, glycoprotein, membrane, receptor, transdu transmembrane; HET: 10M; 2.10A {Homo sapiens} PDB: 1d0r_A
Probab=25.87 E-value=35 Score=15.97 Aligned_cols=11 Identities=27% Similarity=0.283 Sum_probs=8.5
Q ss_pred cHHHHHHHHhh
Q psy8996 70 NGQEFAQNLHA 80 (95)
Q Consensus 70 n~~~F~~~L~~ 80 (95)
.+++|.+||..
T Consensus 18 ~ak~Fv~wL~~ 28 (31)
T 3iol_B 18 AAKEFIAWLVK 28 (31)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHc
Confidence 47888888864
No 211
>2cxn_A Glucose-6-phosphate isomerase; 1.40A {Mus musculus} PDB: 2cvp_A 2cxo_A* 2cxp_A* 2cxq_A* 2cxr_A* 2cxs_A* 2cxt_A* 2cxu_A 1u0e_A 1u0f_A* 1u0g_A* 1jiq_A 1iri_A 1nuh_A* 1jlh_A 1iat_A 1hm5_A 1g98_A 1hox_A* 1xtb_A* ...
Probab=25.82 E-value=29 Score=26.88 Aligned_cols=45 Identities=13% Similarity=0.136 Sum_probs=27.0
Q ss_pred eEEeeCCCCCccc-------ccccCeEEEEeccCCC-CCCCCcHHHHHHHHhh
Q psy8996 36 TEVLRMDEYDMSS-------IEHEALILVVASTFGN-GDPPENGQEFAQNLHA 80 (95)
Q Consensus 36 ~~v~~l~~~~~~~-------l~~~~~vi~v~ST~G~-Ge~Pdn~~~F~~~L~~ 80 (95)
.+++-++..|+.. +..++.+++|+|=.|. =|+=.|++.+.+||.+
T Consensus 179 ~~v~fvsNvDp~~i~~~l~~L~~e~TLvIViSKSGtT~ETl~na~~ar~~l~~ 231 (557)
T 2cxn_A 179 PRVWFVSNIDGTHIAKTLASLSPETSLFIIASKTFTTQETITNAETAKEWFLE 231 (557)
T ss_dssp CEEEEECCSSHHHHHHHHTTCCTTTEEEEEECSSSCCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEecCCHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHHHHHHHHH
Confidence 4444457777765 5456667777775543 3334456677777764
No 212
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=25.49 E-value=1e+02 Score=21.20 Aligned_cols=39 Identities=13% Similarity=0.180 Sum_probs=22.5
Q ss_pred ccccEEEeCCCchHHHHHHHHH----HHHhCCCceEEeeCCCC
Q psy8996 6 KREPAFSISEVHYANNYTTESE----VHYANNYTTEVLRMDEY 44 (95)
Q Consensus 6 ~~~~~~ygS~tG~ae~~A~~l~----~~~~~g~~~~v~~l~~~ 44 (95)
++.|++|+++..-.-.+-.++. +.+..+|++++.++..-
T Consensus 120 ~~~~vv~a~N~s~Gv~l~~~~~~~aa~~l~~~~diei~E~HH~ 162 (272)
T 4f3y_A 120 EKIALVFSANMSVGVNVTMKLLEFAAKQFAQGYDIEIIEAHHR 162 (272)
T ss_dssp TTSEEEECSCCCHHHHHHHHHHHHHHHHTSSSCEEEEEEEECT
T ss_pred ccCCEEEECCCCHHHHHHHHHHHHHHHhcCcCCCEEEEEecCC
Confidence 3467888777765544444442 22334567777776653
No 213
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=25.07 E-value=32 Score=24.08 Aligned_cols=33 Identities=12% Similarity=-0.026 Sum_probs=24.2
Q ss_pred EEEeCCCchHHHHHHHHHHHHhCCCceEEeeCCCCC
Q psy8996 10 AFSISEVHYANNYTTESEVHYANNYTTEVLRMDEYD 45 (95)
Q Consensus 10 ~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~ 45 (95)
+-|||..+.+...|++|++ .|.++.++++..+.
T Consensus 208 va~G~~~~~a~~Aa~~L~~---~Gi~v~vi~~~~l~ 240 (324)
T 1umd_B 208 ICYGTVMPEVLQAAAELAK---AGVSAEVLDLRTLM 240 (324)
T ss_dssp EECGGGHHHHHHHHHHHHH---TTCCEEEEECCEEE
T ss_pred EEecHHHHHHHHHHHHHHh---cCCCEEEEEeceec
Confidence 4567777777777776643 58889999888653
No 214
>2khf_A PLNJ; anti-microbial, bacteriocin, peptide, two-peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2khg_A
Probab=24.72 E-value=43 Score=14.79 Aligned_cols=11 Identities=18% Similarity=0.208 Sum_probs=8.6
Q ss_pred cHHHHHHHHhh
Q psy8996 70 NGQEFAQNLHA 80 (95)
Q Consensus 70 n~~~F~~~L~~ 80 (95)
.|+.||..|+.
T Consensus 2 awknfwsslrk 12 (26)
T 2khf_A 2 AWKNFWSSLRK 12 (26)
T ss_dssp CHHHHHHHHHH
T ss_pred cHHHHHHHHHh
Confidence 47889998864
No 215
>1nkw_F 50S ribosomal protein L9; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1nwx_F* 1nwy_F* 1sm1_F* 1xbp_F* 1pnu_F 1pny_F 1vor_I 1vou_I 1vow_I 1voy_I 1vp0_I
Probab=24.71 E-value=65 Score=20.35 Aligned_cols=18 Identities=0% Similarity=-0.123 Sum_probs=13.4
Q ss_pred cEEEeCCCchHHHHHHHHHH
Q psy8996 9 PAFSISEVHYANNYTTESEV 28 (95)
Q Consensus 9 ~~~ygS~tG~ae~~A~~l~~ 28 (95)
+-+|||.| ++++|+.|.+
T Consensus 85 gklfGSVt--~~dIa~al~~ 102 (146)
T 1nkw_F 85 GKIYGAVT--HQDVANSLDQ 102 (146)
T ss_pred CceeeccC--HHHHHHHHHH
Confidence 56899886 6788877754
No 216
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=24.66 E-value=45 Score=22.32 Aligned_cols=29 Identities=14% Similarity=-0.007 Sum_probs=18.5
Q ss_pred cccEEEeCCCchHH---HHHHHHHH-HHhCCCc
Q psy8996 7 REPAFSISEVHYAN---NYTTESEV-HYANNYT 35 (95)
Q Consensus 7 ~~~~~ygS~tG~ae---~~A~~l~~-~~~~g~~ 35 (95)
++.||-||-.++.. ..|++|.+ +.++|+.
T Consensus 15 ~IaV~cGS~~~~~~~y~~~A~~lg~~LA~~G~~ 47 (215)
T 2a33_A 15 RICVFCGSSQGKKSSYQDAAVDLGNELVSRNID 47 (215)
T ss_dssp EEEEECCSSCCSSHHHHHHHHHHHHHHHHTTCE
T ss_pred eEEEEECCCCCCchHHHHHHHHHHHHHHHCCCE
Confidence 34555499888643 56888876 4457754
No 217
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=24.35 E-value=1.2e+02 Score=21.56 Aligned_cols=29 Identities=7% Similarity=0.016 Sum_probs=22.2
Q ss_pred CCchHHHHHHHHHH-HHhCCCceEEeeCCC
Q psy8996 15 EVHYANNYTTESEV-HYANNYTTEVLRMDE 43 (95)
Q Consensus 15 ~tG~ae~~A~~l~~-~~~~g~~~~v~~l~~ 43 (95)
..|-++.++..|++ +.++|++|.++....
T Consensus 31 ~~GG~~~~~~~la~~L~~~G~~V~v~~~~~ 60 (499)
T 2r60_A 31 DFGGQLVYVKEVSLALAEMGVQVDIITRRI 60 (499)
T ss_dssp TBSHHHHHHHHHHHHHHHTTCEEEEEEECC
T ss_pred CCCCeeehHHHHHHHHHhcCCeEEEEeCCC
Confidence 36778888888876 456899999887653
No 218
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=23.67 E-value=73 Score=22.56 Aligned_cols=60 Identities=10% Similarity=0.051 Sum_probs=35.9
Q ss_pred ccccccccEEEe----------CCCchHHHHHHHHHHHH-hCCCceEEeeCCCCCcc------------cccccCeEEEE
Q psy8996 2 EIVEKREPAFSI----------SEVHYANNYTTESEVHY-ANNYTTEVLRMDEYDMS------------SIEHEALILVV 58 (95)
Q Consensus 2 ~~~~~~~~~~yg----------S~tG~ae~~A~~l~~~~-~~g~~~~v~~l~~~~~~------------~l~~~~~vi~v 58 (95)
..-++|+.++.+ .-.|+..+ |+.|++.+ ..||+|.+.. +.+.. +....+.+|++
T Consensus 56 ~~~~rg~aLIInN~~F~~~~l~~R~Gt~~D-a~~L~~~f~~LGF~V~~~~--dlt~~em~~~l~~f~~~dh~~~D~~vv~ 132 (310)
T 2nn3_C 56 NHKHRGMAIIFNHEHFDIHSLKSRTGTNVD-SDNLSKVLKTLGFKVTVFP--NLKSEEINKFIQQTAEMDHSDADCLLVA 132 (310)
T ss_dssp CSSBCCEEEEEECCCCSSTTCCCCTTHHHH-HHHHHHHHHHTTCEEEEEE--SCCHHHHHHHHHHHHSSCGGGBSCEEEE
T ss_pred CCCCcCEEEEEechhcCCCCcccCCCCHHH-HHHHHHHHHHCCCEEEEec--CCCHHHHHHHHHHHHHhccCCCCEEEEE
Confidence 334556666654 13455555 68888755 5899887663 33322 23356677777
Q ss_pred eccCCC
Q psy8996 59 ASTFGN 64 (95)
Q Consensus 59 ~ST~G~ 64 (95)
..++|.
T Consensus 133 ilSHG~ 138 (310)
T 2nn3_C 133 VLTAGE 138 (310)
T ss_dssp EEEEEE
T ss_pred EeCCCC
Confidence 777884
No 219
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=23.65 E-value=36 Score=23.86 Aligned_cols=33 Identities=18% Similarity=0.126 Sum_probs=22.9
Q ss_pred EEEeCCCchHHHHHHHHHHHHhCCCceEEeeCCCCC
Q psy8996 10 AFSISEVHYANNYTTESEVHYANNYTTEVLRMDEYD 45 (95)
Q Consensus 10 ~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~ 45 (95)
+-|||..+.+...|++|+ +.|.++.++++..+.
T Consensus 207 va~G~~~~~a~~Aa~~L~---~~Gi~v~vi~~~~l~ 239 (324)
T 1w85_B 207 IAYGAMVHESLKAAAELE---KEGISAEVVDLRTVQ 239 (324)
T ss_dssp EECTTHHHHHHHHHHHHH---HTTCCEEEEECSEEE
T ss_pred EEecHHHHHHHHHHHHHH---hcCCCEEEEEeeeec
Confidence 445677777777666664 358889999888643
No 220
>2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway, aromatic amino acid biosynthesis, lyase, sulphonamide; HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A* 2xda_A* 1j2y_A* 2wks_A* 2xb9_A* 2c4v_A* 2xd9_A*
Probab=23.46 E-value=52 Score=21.75 Aligned_cols=76 Identities=9% Similarity=0.049 Sum_probs=44.0
Q ss_pred cccccccEEEeCCCchHHHHHHHHHH-HH--hCCCceEEeeCCC-CC-cccc----cc-cCeEEEEeccCCCCCCCCcHH
Q psy8996 3 IVEKREPAFSISEVHYANNYTTESEV-HY--ANNYTTEVLRMDE-YD-MSSI----EH-EALILVVASTFGNGDPPENGQ 72 (95)
Q Consensus 3 ~~~~~~~~~ygS~tG~ae~~A~~l~~-~~--~~g~~~~v~~l~~-~~-~~~l----~~-~~~vi~v~ST~G~Ge~Pdn~~ 72 (95)
..-+|.|-+||++| =+++-+.+.+ +. ..|+.+++.--+. -. ++.+ .+ .+.+|+=- |-..-...
T Consensus 22 lLG~REP~iYG~~T--l~di~~~l~~~a~~~~~g~~l~~~QSN~EGeLId~Ih~a~~~~~dgIIINp-----gAyTHtSv 94 (176)
T 2c4w_A 22 MLGHRDPRLYGMVT--LDQIHEIMQTFVKQGNLDVELEFFQTNFEGEIIDKIQESVGSEYEGIIINP-----GAFSHTSI 94 (176)
T ss_dssp GBTTTBCGGGTSCC--HHHHHHHHHHHHHHTTCCEEEEEEECSCHHHHHHHHHHHHSSSCCEEEEEC-----GGGGGTCH
T ss_pred ccCCCCCCcCCcCC--HHHHHHHHHHHhccccCCCEEEEEeeCcHHHHHHHHHHhccCCeeEEEECc-----chhccchH
Confidence 34578899999998 5666677755 55 5676666665442 00 1111 22 45555532 22234456
Q ss_pred HHHHHHhhCCCCC
Q psy8996 73 EFAQNLHALRIGE 85 (95)
Q Consensus 73 ~F~~~L~~~~~~~ 85 (95)
...+.|.....|-
T Consensus 95 AlrDAl~~v~~P~ 107 (176)
T 2c4w_A 95 AIADAIMLAGKPV 107 (176)
T ss_dssp HHHHHHHTSSSCE
T ss_pred HHHHHHHhCCCCE
Confidence 6777777766664
No 221
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=23.38 E-value=1.7e+02 Score=19.64 Aligned_cols=52 Identities=17% Similarity=0.167 Sum_probs=31.6
Q ss_pred ccccEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCCCCC--cccccccCeEEEEec
Q psy8996 6 KREPAFSISEVHYANNYTTESEVHYANNYTTEVLRMDEYD--MSSIEHEALILVVAS 60 (95)
Q Consensus 6 ~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~--~~~l~~~~~vi~v~S 60 (95)
|++-++=.....+...+...|+ +.|+++++.....-+ +.++.+.+.+|+--+
T Consensus 4 ~~vliiqh~~~e~~~~i~~~l~---~~G~~v~v~~~~~~~~~p~~~~~~d~lIl~GG 57 (250)
T 3m3p_A 4 KPVMIIQFSASEGPGHFGDFLA---GEHIPFQVLRMDRSDPLPAEIRDCSGLAMMGG 57 (250)
T ss_dssp CCEEEEESSSSCCCHHHHHHHH---HTTCCEEEEEGGGTCCCCSCGGGSSEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHH---HCCCeEEEEeccCCCcCcCccccCCEEEECCC
Confidence 4555555555556666655443 468888888765433 456677787666443
No 222
>1jrj_A Exendin-4; Trp-CAGE, GLP-1, poly-proii, hydrophobic cluster, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=23.12 E-value=39 Score=16.81 Aligned_cols=11 Identities=18% Similarity=-0.009 Sum_probs=8.9
Q ss_pred HHHHHHHHhhC
Q psy8996 71 GQEFAQNLHAL 81 (95)
Q Consensus 71 ~~~F~~~L~~~ 81 (95)
+++|.+||...
T Consensus 19 ak~fv~wL~~~ 29 (39)
T 1jrj_A 19 VRLFIEWLKNG 29 (39)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHcC
Confidence 68899999853
No 223
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=22.88 E-value=1.1e+02 Score=23.25 Aligned_cols=25 Identities=8% Similarity=-0.129 Sum_probs=19.9
Q ss_pred ccccEEEeCCCchHHHHHHHHHHHH
Q psy8996 6 KREPAFSISEVHYANNYTTESEVHY 30 (95)
Q Consensus 6 ~~~~~~ygS~tG~ae~~A~~l~~~~ 30 (95)
-|++||-++++|.|.-..+.|....
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~~~ 187 (502)
T 2qe7_A 163 QRELIIGDRQTGKTTIAIDTIINQK 187 (502)
T ss_dssp CBCEEEECSSSCHHHHHHHHHHGGG
T ss_pred CEEEEECCCCCCchHHHHHHHHHhh
Confidence 3678999999999998777776543
No 224
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=22.84 E-value=67 Score=21.74 Aligned_cols=46 Identities=7% Similarity=0.086 Sum_probs=29.0
Q ss_pred CchHHHHHHHHHHHH-hCCCceEEeeCCCCCccc------------ccccCeEEEEeccCCC
Q psy8996 16 VHYANNYTTESEVHY-ANNYTTEVLRMDEYDMSS------------IEHEALILVVASTFGN 64 (95)
Q Consensus 16 tG~ae~~A~~l~~~~-~~g~~~~v~~l~~~~~~~------------l~~~~~vi~v~ST~G~ 64 (95)
.|+..+ |+.|++.+ +.||+|.+.. +.+.++ ....+.+|++..+||.
T Consensus 37 ~g~~~D-~~~l~~~f~~LgF~V~~~~--dlt~~em~~~l~~~~~~~~~~~d~~v~~~lsHG~ 95 (250)
T 2j32_A 37 SGTDVD-AANLRETFRNLKYEVRNKN--DLTREEIVELMRDVSKEDHSKRSSFVCVLLSHGE 95 (250)
T ss_dssp TTHHHH-HHHHHHHHHHTTCEEEEEE--SCCHHHHHHHHHHHHTSCCTTEEEEEEEEESCEE
T ss_pred CCCHHH-HHHHHHHHHHCCCEEEEEe--CCCHHHHHHHHHHHHHhhccCCCEEEEEECCCCC
Confidence 455555 68888755 5899887653 333322 2345667777788885
No 225
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=22.69 E-value=36 Score=24.08 Aligned_cols=45 Identities=7% Similarity=0.090 Sum_probs=27.6
Q ss_pred chHHHHHHHHHHHH-hCCCceEEeeCCCCCccc------------ccccCeEEEEeccCCC
Q psy8996 17 HYANNYTTESEVHY-ANNYTTEVLRMDEYDMSS------------IEHEALILVVASTFGN 64 (95)
Q Consensus 17 G~ae~~A~~l~~~~-~~g~~~~v~~l~~~~~~~------------l~~~~~vi~v~ST~G~ 64 (95)
|+..+ |+.|++.+ ..||+|.+.. +.+..+ ....+.+|++..+||.
T Consensus 91 G~~~D-a~~L~~~f~~LGF~V~~~~--dlt~~em~~~l~~~~~~~h~~~d~~vv~ilsHG~ 148 (305)
T 1f1j_A 91 GTDKD-AEALFKCFRSLGFDVIVYN--DCSCAKMQDLLKKASEEDHTNAACFACILLSHGE 148 (305)
T ss_dssp THHHH-HHHHHHHHHHHTEEEEEEE--SCCHHHHHHHHHHHHHSCGGGEEEEEEEEESCEE
T ss_pred CcHHH-HHHHHHHHHHCCCEEEEec--CcCHHHHHHHHHHHHHhhcCCCCEEEEEEecCCC
Confidence 54444 67787755 4799877652 333322 2345677788888985
No 226
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=22.54 E-value=1.3e+02 Score=20.08 Aligned_cols=29 Identities=3% Similarity=-0.292 Sum_probs=22.5
Q ss_pred CCchHHHHHHHHHH-HHhCCCceEEeeCCC
Q psy8996 15 EVHYANNYTTESEV-HYANNYTTEVLRMDE 43 (95)
Q Consensus 15 ~tG~ae~~A~~l~~-~~~~g~~~~v~~l~~ 43 (95)
..|-++..+..+++ +.++|+++.++....
T Consensus 28 ~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~ 57 (342)
T 2iuy_A 28 GYGGIQWVVANLMDGLLELGHEVFLLGAPG 57 (342)
T ss_dssp SSCHHHHHHHHHHHHHHHTTCEEEEESCTT
T ss_pred cCChHHHHHHHHHHHHHHcCCeEEEEecCC
Confidence 34888888888876 446899999987764
No 227
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=22.42 E-value=64 Score=20.68 Aligned_cols=66 Identities=14% Similarity=0.020 Sum_probs=38.8
Q ss_pred CchHHHHHHHHHHHH-hCCCceEEeeCCCCCcc-------------cccccCeEEEEeccCCC-CCC------CCcHHHH
Q psy8996 16 VHYANNYTTESEVHY-ANNYTTEVLRMDEYDMS-------------SIEHEALILVVASTFGN-GDP------PENGQEF 74 (95)
Q Consensus 16 tG~ae~~A~~l~~~~-~~g~~~~v~~l~~~~~~-------------~l~~~~~vi~v~ST~G~-Ge~------Pdn~~~F 74 (95)
.|+..+ |+.|.+.+ ..||.|.+.. +.+.. +....+.+|++.-|||. |.. +=+..++
T Consensus 54 ~Gt~~D-~~~L~~~f~~LgF~V~~~~--dlt~~em~~~l~~~~~~~dh~~~dc~vv~ilSHG~~g~i~g~D~~~v~l~~i 130 (167)
T 1pyo_A 54 SGGDVD-HSTLVTLFKLLGYDVHVLC--DQTAQEMQEKLQNFAQLPAHRVTDSCIVALLSHGVEGAIYGVDGKLLQLQEV 130 (167)
T ss_dssp TTHHHH-HHHHHHHHHHTTEEEEEEE--SCCHHHHHHHHHHHHTCGGGGTSSEEEEEEESCEETTEEECTTSCEEEHHHH
T ss_pred CCcHHH-HHHHHHHHHHCCCEEEEee--CCCHHHHHHHHHHhhhhhhccCCCEEEEEeCCCCCCCeEEEeCCCEEcHHHH
Confidence 466555 57788755 5899887653 33222 23455678888888885 211 2234567
Q ss_pred HHHHhhCCCC
Q psy8996 75 AQNLHALRIG 84 (95)
Q Consensus 75 ~~~L~~~~~~ 84 (95)
|..+.....|
T Consensus 131 ~~~F~~~~Cp 140 (167)
T 1pyo_A 131 FQLFDNANCP 140 (167)
T ss_dssp HHHTSTTTCG
T ss_pred HHHhcccCCh
Confidence 7766544333
No 228
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=22.25 E-value=70 Score=22.05 Aligned_cols=46 Identities=11% Similarity=0.120 Sum_probs=29.0
Q ss_pred CchHHHHHHHHHHHH-hCCCceEEeeCCCCCcc------------cccccCeEEEEeccCCC
Q psy8996 16 VHYANNYTTESEVHY-ANNYTTEVLRMDEYDMS------------SIEHEALILVVASTFGN 64 (95)
Q Consensus 16 tG~ae~~A~~l~~~~-~~g~~~~v~~l~~~~~~------------~l~~~~~vi~v~ST~G~ 64 (95)
.|+..+ |+.|++.+ ..||+|.+.. +.+.. +..+.+.+|++..+||.
T Consensus 52 ~g~~~D-a~~L~~~f~~LGF~V~~~~--dlt~~em~~~l~~~~~~dh~~~d~~v~~~lsHG~ 110 (272)
T 1m72_A 52 TGTNVD-SDNLSKVLKTLGFKVTVFP--NLKSEEINKFIQQTAEMDHSDADCLLVAVLTHGE 110 (272)
T ss_dssp TTHHHH-HHHHHHHHHHTTCEEEEEE--SCCHHHHHHHHHHHHTSCCTTEEEEEEEEESCEE
T ss_pred CCCHHH-HHHHHHHHHHCCCEEEEec--CcCHHHHHHHHHHHHHhhcCCCCEEEEEEcCCCC
Confidence 455555 68888755 5899887663 33322 12345677888888884
No 229
>3rqt_A Putative uncharacterized protein; ligand binding component, ABC-type import system, nickel, SI DI-peptides, structural genomics; HET: MSE HIS EPE; 1.50A {Staphylococcus aureus}
Probab=22.22 E-value=2.3e+02 Score=20.56 Aligned_cols=27 Identities=7% Similarity=0.059 Sum_probs=20.6
Q ss_pred chHHHHHHHHHH-HHhCCCceEEeeCCC
Q psy8996 17 HYANNYTTESEV-HYANNYTTEVLRMDE 43 (95)
Q Consensus 17 G~ae~~A~~l~~-~~~~g~~~~v~~l~~ 43 (95)
-..+.+|+.|++ +.+.|+++++..++.
T Consensus 339 ~~~~~~a~~iq~~l~~iGI~v~i~~~~~ 366 (486)
T 3rqt_A 339 PELSKIAQVLQSDAKKANIEIDIKSVDD 366 (486)
T ss_dssp THHHHHHHHHHHHHHTTTEEEEEEECSC
T ss_pred ccHHHHHHHHHHHHHhcCCEEEEEEecc
Confidence 356678999976 556899999988864
No 230
>2rrh_A VIP peptides; peptide hormone, hormone; NMR {Homo sapiens} PDB: 2rri_A
Probab=22.16 E-value=48 Score=15.25 Aligned_cols=10 Identities=0% Similarity=0.185 Sum_probs=6.9
Q ss_pred HHHHHHHHhh
Q psy8996 71 GQEFAQNLHA 80 (95)
Q Consensus 71 ~~~F~~~L~~ 80 (95)
+++|++||.+
T Consensus 19 ak~fl~~l~~ 28 (29)
T 2rrh_A 19 VKKYLNSILN 28 (29)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 6677777754
No 231
>3gx1_A LIN1832 protein; APC63308.2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Listeria innocua CLIP11262}
Probab=21.99 E-value=1.4e+02 Score=18.05 Aligned_cols=37 Identities=8% Similarity=-0.019 Sum_probs=28.5
Q ss_pred cccccEEEeCCCc-hHHHHHHHHHHHHhCCCceEEeeCC
Q psy8996 5 EKREPAFSISEVH-YANNYTTESEVHYANNYTTEVLRMD 42 (95)
Q Consensus 5 ~~~~~~~ygS~tG-~ae~~A~~l~~~~~~g~~~~v~~l~ 42 (95)
.++++++..|-.. .|+.+++.....+.. -.+..+++.
T Consensus 2 ~~~igiiivsHG~~~A~~l~~~a~~i~G~-~~~~aid~~ 39 (130)
T 3gx1_A 2 NAQVEVIVMMHGRSTATSMVETVQELLSI-ESGIALDMP 39 (130)
T ss_dssp CSSCEEEEEEESSSHHHHHHHHHHHHHTC-CCCEEEEEC
T ss_pred CCceEEEEEcCCHHHHHHHHHHHHHHcCc-cCEEEEEec
Confidence 3578999999999 999999888777755 456666664
No 232
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=21.87 E-value=67 Score=22.25 Aligned_cols=53 Identities=8% Similarity=0.026 Sum_probs=33.0
Q ss_pred ccccccEEEeCCCchHHHHHHHHHHHHhCCCceEEeeCCCCCcccccc-cCeEEEE
Q psy8996 4 VEKREPAFSISEVHYANNYTTESEVHYANNYTTEVLRMDEYDMSSIEH-EALILVV 58 (95)
Q Consensus 4 ~~~~~~~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~~~~l~~-~~~vi~v 58 (95)
+.++=.++.-|.+|++..+-+.+..+.++|..+ +.+.......|.+ .+++|.+
T Consensus 138 l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~--IaIT~~~~S~La~~AD~~I~~ 191 (306)
T 1nri_A 138 FSKNDVLVGIAASGRTPYVIAGLQYAKSLGALT--ISIASNPKSEMAEIADIAIET 191 (306)
T ss_dssp CCTTSEEEEECTTSCCHHHHHHHHHHHHHTCEE--EEEESSTTCHHHHHSSEEEEC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEE--EEEECCCCChHHHhCCEEEEc
Confidence 345556788899999999988888777778543 3333322233433 3444444
No 233
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=21.81 E-value=34 Score=14.38 Aligned_cols=14 Identities=14% Similarity=0.102 Sum_probs=8.7
Q ss_pred cccccEEEeC-CCch
Q psy8996 5 EKREPAFSIS-EVHY 18 (95)
Q Consensus 5 ~~~~~~~ygS-~tG~ 18 (95)
+|-+||+|-- .||.
T Consensus 3 kkpvpiiycnrrtgk 17 (21)
T 8tfv_A 3 KKPVPIIYCNRRTGK 17 (26)
T ss_dssp CCCCCCEEEEGGGTE
T ss_pred CCcccEEEEcCcccc
Confidence 4668888853 4443
No 234
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=21.79 E-value=83 Score=20.64 Aligned_cols=47 Identities=11% Similarity=0.099 Sum_probs=27.4
Q ss_pred cccccEE-EeCCCchHHHHHHHHHHHHhCCCceEEeeCCCCCccccc--ccCeEEE
Q psy8996 5 EKREPAF-SISEVHYANNYTTESEVHYANNYTTEVLRMDEYDMSSIE--HEALILV 57 (95)
Q Consensus 5 ~~~~~~~-ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~~~~l~--~~~~vi~ 57 (95)
.+++.|+ || .|+++.++++|++ .|..+.+...+. +++++. +.+.+|+
T Consensus 24 ~~~I~iiD~g--~~~~~~i~~~l~~---~G~~~~vv~~~~-~~~~l~~~~~dglil 73 (218)
T 2vpi_A 24 EGAVVILDAG--AQYGKVIDRRVRE---LFVQSEIFPLET-PAFAIKEQGFRAIII 73 (218)
T ss_dssp TTCEEEEECS--TTTTHHHHHHHHH---TTCCEEEECTTC-CHHHHHHHTCSEEEE
T ss_pred CCeEEEEECC--CchHHHHHHHHHH---CCCEEEEEECCC-ChHHHhhcCCCEEEE
Confidence 3566666 44 4555666666554 477788877654 244453 3565555
No 235
>1d1q_A Tyrosine phosphatase (E.C.3.1.3.48); beta-alpha-beta, hydrolase; HET: 4NP; 1.70A {Saccharomyces cerevisiae} SCOP: c.44.1.1 PDB: 1d2a_A* 1d1p_A*
Probab=21.71 E-value=75 Score=19.88 Aligned_cols=29 Identities=3% Similarity=0.064 Sum_probs=18.3
Q ss_pred hCCCceEEeeCCCCCcccccccCeEEEEec
Q psy8996 31 ANNYTTEVLRMDEYDMSSIEHEALILVVAS 60 (95)
Q Consensus 31 ~~g~~~~v~~l~~~~~~~l~~~~~vi~v~S 60 (95)
++|++.. +.-..++..++...++||.++.
T Consensus 68 ~~Gid~s-~~ar~l~~~~~~~~DlIl~M~~ 96 (161)
T 1d1q_A 68 QHGVKIN-HKGKQIKTKHFDEYDYIIGMDE 96 (161)
T ss_dssp HTTCCCC-CCBCBCCGGGGGTCSEEEESSH
T ss_pred HcCcCCC-ceEeECCHHHHhhCCEEEEeCH
Confidence 4566655 4444555566677788887754
No 236
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=21.67 E-value=31 Score=22.48 Aligned_cols=46 Identities=7% Similarity=0.075 Sum_probs=29.8
Q ss_pred CchHHHHHHHHHHHH-hCCCceEEeeCCCCCcc------------cccccCeEEEEeccCCC
Q psy8996 16 VHYANNYTTESEVHY-ANNYTTEVLRMDEYDMS------------SIEHEALILVVASTFGN 64 (95)
Q Consensus 16 tG~ae~~A~~l~~~~-~~g~~~~v~~l~~~~~~------------~l~~~~~vi~v~ST~G~ 64 (95)
.|+..+ ++.|.+.+ ..||.|.+.. +.+.. +....+.+|++.-|||+
T Consensus 65 ~Gt~~D-~~~L~~~F~~LgF~V~v~~--dlt~~em~~~l~~~s~~dh~~~dc~vvvilSHG~ 123 (173)
T 2ql9_A 65 NGTDKD-AEALFKCFRSLGFDVIVYN--DCSCAKMQDLLKKASEEDHTNAACFACILLSHGE 123 (173)
T ss_dssp TTHHHH-HHHHHHHHHHHTEEEEEEE--SCCHHHHHHHHHHHHTSCCTTEEEEEEEEESCEE
T ss_pred CCcHHH-HHHHHHHHHHCCCEEEEEe--CCCHHHHHHHHHHHHHhhccCCCeEEEeecCCCC
Confidence 366666 57787755 4899887663 33322 22345678888888885
No 237
>2wzn_A TET3, 354AA long hypothetical operon protein FRV; protease, hydrolase, thermophilic, SELF-compartmentalising; 1.90A {Pyrococcus horikoshii} PDB: 2pe3_A
Probab=21.24 E-value=84 Score=20.49 Aligned_cols=26 Identities=8% Similarity=-0.134 Sum_probs=18.2
Q ss_pred CCCchHH-HHHHHHHHHH-hCCCceEEe
Q psy8996 14 SEVHYAN-NYTTESEVHY-ANNYTTEVL 39 (95)
Q Consensus 14 S~tG~ae-~~A~~l~~~~-~~g~~~~v~ 39 (95)
|-+|+-+ .+|+.|++.+ ..|+++++-
T Consensus 23 S~sg~E~~~v~~~l~~~l~~~G~~v~~D 50 (354)
T 2wzn_A 23 GVSGYEHLGIRDIVVDVLKEVADEVKVD 50 (354)
T ss_dssp CBTTCGGGTHHHHHHHHHHTTSSEEEEC
T ss_pred CCCcchHHHHHHHHHHHHHHcCCEEEEe
Confidence 6678765 5888887644 588877653
No 238
>3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A*
Probab=21.22 E-value=1e+02 Score=21.88 Aligned_cols=73 Identities=10% Similarity=0.061 Sum_probs=40.7
Q ss_pred cccccEEEeCCCc----hHHHHHHHHHHHHhC-CCceEEeeCCCCCc----ccc------cccCeEEEEeccCCCCCCCC
Q psy8996 5 EKREPAFSISEVH----YANNYTTESEVHYAN-NYTTEVLRMDEYDM----SSI------EHEALILVVASTFGNGDPPE 69 (95)
Q Consensus 5 ~~~~~~~ygS~tG----~ae~~A~~l~~~~~~-g~~~~v~~l~~~~~----~~l------~~~~~vi~v~ST~G~Ge~Pd 69 (95)
++++|+ |+|..| +.+.++++.++..++ ||..-=+.+...++ +.+ -..+.-|.+-...|- -++
T Consensus 135 ~~~v~~-y~s~~~~~~~~~~~~~~~a~~~~~~~G~~~~K~Kvg~~~~~~d~~~v~avR~~~g~~~~l~vDan~~~--~~~ 211 (372)
T 3tj4_A 135 TAGVEA-YNTDIGWLSFTLEDLLAGSARAVEEDGFTRLKIKVGHDDPNIDIARLTAVRERVDSAVRIAIDGNGKW--DLP 211 (372)
T ss_dssp CSCEEE-EECTTCCTTSCHHHHHHHHHHHHHTTCCCEEEEECCCSSHHHHHHHHHHHHHHSCTTCEEEEECTTCC--CHH
T ss_pred CCCeEE-EEecCCccCCCHHHHHHHHHHHHHccCCCEEEEcCCCCCHHHHHHHHHHHHHHcCCCCcEEeeCCCCC--CHH
Confidence 344664 666333 788888888877777 88642222332111 111 124555556554332 367
Q ss_pred cHHHHHHHHhh
Q psy8996 70 NGQEFAQNLHA 80 (95)
Q Consensus 70 n~~~F~~~L~~ 80 (95)
++..|.+.|.+
T Consensus 212 ~a~~~~~~l~~ 222 (372)
T 3tj4_A 212 TCQRFCAAAKD 222 (372)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHHhh
Confidence 77788877764
No 239
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=20.85 E-value=1.3e+02 Score=20.32 Aligned_cols=73 Identities=12% Similarity=0.065 Sum_probs=45.8
Q ss_pred ccccEEEeCCCchHHHHHHHH-HHHH-hCCCceEEeeCCCCCcccc----cccC-eEEEEeccCCCCCCCCcHHHHHHHH
Q psy8996 6 KREPAFSISEVHYANNYTTES-EVHY-ANNYTTEVLRMDEYDMSSI----EHEA-LILVVASTFGNGDPPENGQEFAQNL 78 (95)
Q Consensus 6 ~~~~~~ygS~tG~ae~~A~~l-~~~~-~~g~~~~v~~l~~~~~~~l----~~~~-~vi~v~ST~G~Ge~Pdn~~~F~~~L 78 (95)
++-.++-++.-|..-.+...+ +..+ .+||+|.....+ .+++++ ...+ -+|.++++.+ .-.+.++.+.+.|
T Consensus 122 ~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~-vp~e~l~~~~~~~~~d~V~lS~l~~--~~~~~~~~~i~~l 198 (258)
T 2i2x_B 122 TKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRD-VPAEEVLAAVQKEKPIMLTGTALMT--TTMYAFKEVNDML 198 (258)
T ss_dssp CSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEE-CCSHHHHHHHHHHCCSEEEEECCCT--TTTTHHHHHHHHH
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEEeecc--CCHHHHHHHHHHH
Confidence 344688888888888888777 4544 589987655443 345554 2223 3444455432 3356788888888
Q ss_pred hhC
Q psy8996 79 HAL 81 (95)
Q Consensus 79 ~~~ 81 (95)
++.
T Consensus 199 ~~~ 201 (258)
T 2i2x_B 199 LEN 201 (258)
T ss_dssp HTT
T ss_pred Hhc
Confidence 764
No 240
>3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans}
Probab=20.68 E-value=88 Score=20.46 Aligned_cols=76 Identities=12% Similarity=0.118 Sum_probs=38.8
Q ss_pred cccccccEEEeCCCchHHHHHHHHHH-H--HhCCCceEEeeCCC-CC-cccc-----cccCeEEEEeccCCCCCCCCcHH
Q psy8996 3 IVEKREPAFSISEVHYANNYTTESEV-H--YANNYTTEVLRMDE-YD-MSSI-----EHEALILVVASTFGNGDPPENGQ 72 (95)
Q Consensus 3 ~~~~~~~~~ygS~tG~ae~~A~~l~~-~--~~~g~~~~v~~l~~-~~-~~~l-----~~~~~vi~v~ST~G~Ge~Pdn~~ 72 (95)
..-+|.|-+||++| =+++-+.+.+ + .+.|+.+++..-+. -. ++.+ .+.+.+|+=-.-| .-...
T Consensus 27 lLG~REP~iYG~~T--L~di~~~l~~~a~~~~~g~~v~~~QSN~EGeLId~Ih~A~~~~~dgIIINpgAy-----THtSv 99 (167)
T 3kip_A 27 LLGTREPEKYGTTS--LSDIEQAAIEQAKLKNNDSEVLVFQSNTEGFIIDRIHEAKRQGVGFVVINAGAY-----THTSV 99 (167)
T ss_dssp GTTCC----CCSCC--HHHHHHHHHHHHHHTCSSCEEEEEECSCHHHHHHHHHHHHHTTCCEEEEECGGG-----GGTCH
T ss_pred ccCCCCCCcCCcCC--HHHHHHHHHHHhccccCCcEEEEEecCCHHHHHHHHHHhhhcCccEEEEccccc-----eeccH
Confidence 34578999999984 5666666655 4 34677777665542 00 1111 2345555533222 33445
Q ss_pred HHHHHHhhCCCCC
Q psy8996 73 EFAQNLHALRIGE 85 (95)
Q Consensus 73 ~F~~~L~~~~~~~ 85 (95)
...+.|...+.|-
T Consensus 100 AlrDAL~~v~~P~ 112 (167)
T 3kip_A 100 GIRDALLGTAIPF 112 (167)
T ss_dssp HHHHHHHHTTCCE
T ss_pred HHHHHHHhcCCCE
Confidence 6667777666554
No 241
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=20.62 E-value=1e+02 Score=23.64 Aligned_cols=24 Identities=8% Similarity=-0.116 Sum_probs=19.3
Q ss_pred ccccEEEeCCCchHHHHHHHHHHH
Q psy8996 6 KREPAFSISEVHYANNYTTESEVH 29 (95)
Q Consensus 6 ~~~~~~ygS~tG~ae~~A~~l~~~ 29 (95)
-|++||-++++|.|.-..+.|...
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~ 199 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQ 199 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCccHHHHHHHHHh
Confidence 367899999999999877777653
No 242
>2q8n_A Glucose-6-phosphate isomerase; TM1385, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: 2PE; 1.82A {Thermotoga maritima MSB8}
Probab=20.60 E-value=83 Score=23.60 Aligned_cols=45 Identities=20% Similarity=0.183 Sum_probs=26.6
Q ss_pred eEEeeCCCCCcc-------cccccCeEEEEeccCCC-CCCCCcHHHHHHHHhh
Q psy8996 36 TEVLRMDEYDMS-------SIEHEALILVVASTFGN-GDPPENGQEFAQNLHA 80 (95)
Q Consensus 36 ~~v~~l~~~~~~-------~l~~~~~vi~v~ST~G~-Ge~Pdn~~~F~~~L~~ 80 (95)
..+.-+++.|+. .+..++.+++++|=.|. =|+=.+++.+.+||.+
T Consensus 117 ~~v~~~~nvdp~~~~~~l~~L~~~~TlvIviSKSGtT~ET~~~~~~ar~~l~~ 169 (460)
T 2q8n_A 117 ARVFVVDNVDPDLMSSVLDRIDPKTTLFNVISKSGSTAEVMATYSIARGILEA 169 (460)
T ss_dssp CEEEEECSCCHHHHHHHHTTCCGGGEEEEEECSSSCCHHHHHHHHHHHHHHHH
T ss_pred cceEEecCCCHHHHHHHHhcCCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 456666777765 35556666666665543 3333456666777764
No 243
>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3
Probab=20.28 E-value=1.4e+02 Score=20.26 Aligned_cols=38 Identities=11% Similarity=0.114 Sum_probs=22.7
Q ss_pred ccccEEEeCCCchHHHHHHHH----HHHHhCCCceEEeeCCCC
Q psy8996 6 KREPAFSISEVHYANNYTTES----EVHYANNYTTEVLRMDEY 44 (95)
Q Consensus 6 ~~~~~~ygS~tG~ae~~A~~l----~~~~~~g~~~~v~~l~~~ 44 (95)
+++|++|+++..---.+-.++ ++.+ .+++++++++..-
T Consensus 100 ~~~~vv~apNfSlGvnll~~l~~~aA~~l-~~ydiEIiE~HH~ 141 (228)
T 1vm6_A 100 KEVPVVQAYNFSIGINVLKRFLSELVKVL-EDWDVEIVETHHR 141 (228)
T ss_dssp TTSEEEECSCCCHHHHHHHHHHHHHHHHT-TTSEEEEEEEECT
T ss_pred hhCCEEEeccccHHHHHHHHHHHHHHHhc-CCCCEEEEEcCCC
Confidence 447888888777644333333 3333 3677887777653
No 244
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=20.23 E-value=79 Score=23.79 Aligned_cols=46 Identities=15% Similarity=0.051 Sum_probs=28.1
Q ss_pred ccccEE-EeCCCchHHHHHHHHHHHHhCCCceEEeeCCCCCccccccc--CeEEE
Q psy8996 6 KREPAF-SISEVHYANNYTTESEVHYANNYTTEVLRMDEYDMSSIEHE--ALILV 57 (95)
Q Consensus 6 ~~~~~~-ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~~~~l~~~--~~vi~ 57 (95)
+++.|+ ||++ +++.++++|++ .|..+.+.+.+. +++++... +.+|+
T Consensus 8 ~~IlIlD~g~~--~~~~i~r~lr~---~G~~~~i~p~~~-~~~~i~~~~~dgiIL 56 (525)
T 1gpm_A 8 HRILILDFGSQ--YTQLVARRVRE---LGVYCELWAWDV-TEAQIRDFNPSGIIL 56 (525)
T ss_dssp SEEEEEECSCT--THHHHHHHHHH---TTCEEEEEESCC-CHHHHHHHCCSEEEE
T ss_pred CEEEEEECCCc--cHHHHHHHHHH---CCCEEEEEECCC-CHHHHhccCCCEEEE
Confidence 445555 6766 46788877765 477788877542 34555443 54544
No 245
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=20.12 E-value=39 Score=23.99 Aligned_cols=33 Identities=12% Similarity=0.005 Sum_probs=22.7
Q ss_pred EEEeCCCchHHHHHHHHHHHHhCCCceEEeeCCCCC
Q psy8996 10 AFSISEVHYANNYTTESEVHYANNYTTEVLRMDEYD 45 (95)
Q Consensus 10 ~~ygS~tG~ae~~A~~l~~~~~~g~~~~v~~l~~~~ 45 (95)
+-|||..+.+...|++|+ +.|.++.++++..+.
T Consensus 222 ia~Gs~~~~a~~Aa~~L~---~~Gi~v~vv~~~~l~ 254 (341)
T 2ozl_B 222 VSHSRPVGHCLEAAAVLS---KEGVECEVINMRTIR 254 (341)
T ss_dssp EECSTHHHHHHHHHHHHH---TTTCCEEEEECCEEE
T ss_pred EEeCHHHHHHHHHHHHHH---hcCCCeEEEeeeeec
Confidence 445677777766666553 358889999888653
Done!