RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8996
(95 letters)
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase,
NOS, INOS, alternative splicing, calcium,
calmodulin-binding, FAD, FMN, heme, iron, metal-binding;
HET: FMN; 2.50A {Homo sapiens}
Length = 219
Score = 66.4 bits (162), Expect = 4e-15
Identities = 23/49 (46%), Positives = 35/49 (71%)
Query: 34 YTTEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFAQNLHALR 82
+ +V+ MD+Y +S +E E L+LVV STFGNGD P NG++ ++L L+
Sbjct: 69 FNPKVVCMDKYRLSCLEEERLLLVVTSTFGNGDCPGNGEKLKKSLFMLK 117
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component;
electron transport; HET: FMN; NMR {Escherichia coli}
SCOP: c.23.5.2
Length = 167
Score = 63.0 bits (154), Expect = 3e-14
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 31 ANNYTTEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFAQNLHA 80
A +++ +Y I E L++VV ST G G+PPE + L +
Sbjct: 36 AAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFS 85
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+,
oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus
norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Length = 688
Score = 61.4 bits (149), Expect = 7e-13
Identities = 27/63 (42%), Positives = 39/63 (61%)
Query: 31 ANNYTTEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFAQNLHALRIGEDANNS 90
+ + + + M+EYD+ +EHEAL+LVV STFGNGDPPENG++F L +R
Sbjct: 37 KHAFDAKAMSMEEYDIVHLEHEALVLVVTSTFGNGDPPENGEKFGCALMEMRHPNSVQEE 96
Query: 91 IST 93
+
Sbjct: 97 RKS 99
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold,
electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Length = 147
Score = 55.3 bits (134), Expect = 2e-11
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 37 EVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFAQNLHA 80
+ + + + LV++ST G GD P+N F + L
Sbjct: 32 TTETLHGPLLEDLPASGIWLVISSTHGAGDIPDNLSPFYEALQE 75
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor,
antley-bixler syndrome, flavoprotein, FMN, FAD,
oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens}
PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A*
3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Length = 618
Score = 54.7 bits (132), Expect = 2e-10
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 18 YANNYTTESEVHYANNYTTEVLRMDEYDMSSIEH-----EALILVVASTFGNGDPPENGQ 72
+AN + ++ +EYD++ + AL++ +T+G GDP +N Q
Sbjct: 35 FANRLSKDAH---RYGMRGMSADPEEYDLADLSSLPEIDNALVVFCMATYGEGDPTDNAQ 91
Query: 73 EFAQNLH 79
+F L
Sbjct: 92 DFYDWLQ 98
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450
reductase, diflavin reductase, FAD, FMN-binding,
electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces
cerevisiae} PDB: 2bn4_A* 2bf4_A*
Length = 682
Score = 53.3 bits (128), Expect = 6e-10
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 31 ANNYTTEVLRMDEYDMSSIEHEA-LILVVASTFGNGDPPENGQEFAQNLHALRIGE 85
N ++ YD S+ ++ + ST+G GD P+ F + G
Sbjct: 77 KFNLNVMCADVENYDFESLNDVPVIVSIFISTYGEGDFPDGAVNFEDFICNAEAGA 132
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase,
hemoprotein, flavoprotein, electron transfer,
oxidoreductase; HET: HEM FMN; 2.03A {Bacillus
megaterium} SCOP: c.23.5.1
Length = 191
Score = 47.7 bits (114), Expect = 3e-08
Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 31 ANNYTTEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFAQNLHALR 82
+ + +V +D + ++ E +L+V ++ NG PP+N ++F L
Sbjct: 48 SKGFAPQVATLDSHA-GNLPREGAVLIVTAS-YNGHPPDNAKQFVDWLDQAS 97
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE,
anisotropic refinement, redox protein; HET: FMN; 1.30A
{Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A*
1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A*
1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A*
1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Length = 147
Score = 43.0 bits (102), Expect = 8e-07
Identities = 8/55 (14%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Query: 31 ANNYTTEVLRMDEYDMSSI-EHEALILVVASTFGNG--DPPENGQEFAQNLHALR 82
Y + + + E L+L+ ST+G+ + ++ +L
Sbjct: 27 DAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWGDDSIELQDDFIPLFDSLEETG 81
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport,
flavoprotein, FMN, transport; HET: FMN; 2.00A
{Desulfovibrio desulfuricans} PDB: 3f6s_A* 3f90_A*
3kap_A* 3kaq_A*
Length = 148
Score = 40.3 bits (95), Expect = 1e-05
Identities = 6/55 (10%), Positives = 17/55 (30%), Gaps = 3/55 (5%)
Query: 31 ANNYTTEVLRMDEYDMSSIEHEA-LILVVASTFGNGDP--PENGQEFAQNLHALR 82
A + +L + ++ +L S +G D ++ + +
Sbjct: 28 AGGHEVTLLNAADASAENLADGYDAVLFGCSAWGMEDLEMQDDFLSLFEEFDRIG 82
>2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus
crispus} SCOP: c.23.5.1
Length = 173
Score = 36.8 bits (85), Expect = 2e-04
Identities = 8/53 (15%), Positives = 17/53 (32%)
Query: 33 NYTTEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFAQNLHALRIGE 85
+ D D +++ L+ + A T+ G E ++ E
Sbjct: 27 KADAPIDVDDVTDPQALKDYDLLFLGAPTWNTGADTERSGTSWDEFLYDKLPE 79
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport;
HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB:
2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A
1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Length = 169
Score = 36.8 bits (85), Expect = 2e-04
Identities = 4/53 (7%), Positives = 18/53 (33%)
Query: 31 ANNYTTEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFAQNLHALRI 83
N + + + +++ + +++ T G+ + + L +
Sbjct: 26 FGNDVVTLHDVSQAEVTDLNDYQYLIIGCPTLNIGELQSDWEGLYSELDDVDF 78
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN
BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB:
1ahn_A*
Length = 175
Score = 36.8 bits (85), Expect = 2e-04
Identities = 7/53 (13%), Positives = 19/53 (35%)
Query: 31 ANNYTTEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFAQNLHALRI 83
+V + + +E ++L+ T+ G+ + +F L +
Sbjct: 25 LGKDVADVHDIAKSSKEDLEAYDILLLGIPTWYYGEAQCDWDDFFPTLEEIDF 77
>2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A
{Rhodobacter capsulatus}
Length = 182
Score = 36.5 bits (84), Expect = 3e-04
Identities = 7/46 (15%), Positives = 16/46 (34%)
Query: 34 YTTEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFAQNLH 79
+ L ++ D++ +++ T G+G P A
Sbjct: 30 VMAKPLNVNRADVADFMAYDFLILGTPTLGDGQLPGLSANAASESW 75
>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently
bound FMN, electron transport; HET: FMN; 2.25A
{Azotobacter vinelandii} SCOP: c.23.5.1
Length = 179
Score = 36.1 bits (83), Expect = 5e-04
Identities = 5/44 (11%), Positives = 14/44 (31%)
Query: 36 TEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFAQNLH 79
++ L ++ +++ T G G+ P +
Sbjct: 31 SDALNVNRVSAEDFAQYQFLILGTPTLGEGELPGLSSDAENESW 74
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport;
HET: FMN; 1.70A {Synechococcus elongatus} SCOP:
c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A*
1czk_A* 1czo_A* 1czh_A* 1d03_A*
Length = 169
Score = 36.1 bits (83), Expect = 5e-04
Identities = 5/48 (10%), Positives = 19/48 (39%)
Query: 36 TEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFAQNLHALRI 83
++ + D S + +++ T+ G+ + + +L ++
Sbjct: 31 VDLNDIANADASDLNAYDYLIIGCPTWNVGELQSDWEGIYDDLDSVNF 78
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport
protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A*
1fue_A*
Length = 164
Score = 33.8 bits (77), Expect = 0.003
Identities = 11/48 (22%), Positives = 20/48 (41%)
Query: 36 TEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFAQNLHALRI 83
EV+ + + +++VA T G GD + ++F L A
Sbjct: 29 AEVVDVAKASKEQFNSFTKVILVAPTAGAGDLQTDWEDFLGTLEASDF 76
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN;
1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB:
2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A*
5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A*
4nul_A*
Length = 138
Score = 26.4 bits (59), Expect = 1.2
Identities = 4/44 (9%), Positives = 18/44 (40%)
Query: 31 ANNYTTEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEF 74
+ + + + ++ + +E ++++ S + E+ E
Sbjct: 25 ESGKDVNTINVSDVNIDELLNEDILILGCSAMTDEVLEESEFEP 68
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.0 bits (56), Expect = 2.6
Identities = 6/44 (13%), Positives = 11/44 (25%), Gaps = 9/44 (20%)
Query: 11 FSISEVHYAN---------NYTTESEVHYANNYTTEVLRMDEYD 45
F E Y + + + +L +E D
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEID 52
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi}
SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A
Length = 361
Score = 24.7 bits (53), Expect = 6.6
Identities = 10/65 (15%), Positives = 16/65 (24%), Gaps = 9/65 (13%)
Query: 4 VEKREPAFSISEVHYANNYTTESEVHYANNYTTEVLRMDEYDMSSIEHEALILVVASTFG 63
V +R P +H NN Y I +L ++F
Sbjct: 238 VTERAPRVRYGSIHSFNNVFKGDAKDPVYRYQYSF---------GIGTSGSVLSEGNSFT 288
Query: 64 NGDPP 68
+
Sbjct: 289 IANLS 293
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.127 0.349
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,385,131
Number of extensions: 69090
Number of successful extensions: 128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 26
Length of query: 95
Length of database: 6,701,793
Length adjustment: 62
Effective length of query: 33
Effective length of database: 4,970,691
Effective search space: 164032803
Effective search space used: 164032803
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (23.3 bits)