RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8996
(95 letters)
>d1tlla2 c.23.5.2 (A:750-951) Nitric oxide (NO) synthase FMN
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 202
Score = 43.7 bits (102), Expect = 3e-07
Identities = 27/63 (42%), Positives = 39/63 (61%)
Query: 31 ANNYTTEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFAQNLHALRIGEDANNS 90
+ + + + M+EYD+ +EHEAL+LVV STFGNGDPPENG++F L +R
Sbjct: 29 KHAFDAKAMSMEEYDIVHLEHEALVLVVTSTFGNGDPPENGEKFGCALMEMRHPNSVQEE 88
Query: 91 IST 93
+
Sbjct: 89 RKS 91
>d1yoba1 c.23.5.1 (A:1-179) Flavodoxin {Azotobacter vinelandii
[TaxId: 354]}
Length = 179
Score = 40.8 bits (95), Expect = 3e-06
Identities = 5/44 (11%), Positives = 14/44 (31%)
Query: 36 TEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFAQNLH 79
++ L ++ +++ T G G+ P +
Sbjct: 31 SDALNVNRVSAEDFAQYQFLILGTPTLGEGELPGLSSDAENESW 74
>d1oboa_ c.23.5.1 (A:) Flavodoxin {Anabaena, pcc 7119 and 7120
[TaxId: 1163]}
Length = 169
Score = 38.2 bits (88), Expect = 3e-05
Identities = 4/51 (7%), Positives = 18/51 (35%)
Query: 31 ANNYTTEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFAQNLHAL 81
N + + + +++ + +++ T G+ + + L +
Sbjct: 26 FGNDVVTLHDVSQAEVTDLNDYQYLIIGCPTLNIGELQSDWEGLYSELDDV 76
>d2fcra_ c.23.5.1 (A:) Flavodoxin {Chondrus crispus [TaxId: 2769]}
Length = 173
Score = 38.1 bits (88), Expect = 3e-05
Identities = 8/51 (15%), Positives = 17/51 (33%)
Query: 36 TEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFAQNLHALRIGED 86
+ D D +++ L+ + A T+ G E ++ E
Sbjct: 30 APIDVDDVTDPQALKDYDLLFLGAPTWNTGADTERSGTSWDEFLYDKLPEV 80
>d1czna_ c.23.5.1 (A:) Flavodoxin {Synechococcus elongatus PCC
7942 [TaxId: 1140]}
Length = 169
Score = 37.7 bits (87), Expect = 4e-05
Identities = 5/48 (10%), Positives = 19/48 (39%)
Query: 36 TEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFAQNLHALRI 83
++ + D S + +++ T+ G+ + + +L ++
Sbjct: 31 VDLNDIANADASDLNAYDYLIIGCPTWNVGELQSDWEGIYDDLDSVNF 78
>d1fuea_ c.23.5.1 (A:) Flavodoxin {Helicobacter pylori [TaxId:
210]}
Length = 163
Score = 36.2 bits (83), Expect = 2e-04
Identities = 11/48 (22%), Positives = 20/48 (41%)
Query: 36 TEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFAQNLHALRI 83
EV+ + + +++VA T G GD + ++F L A
Sbjct: 28 AEVVDVAKASKEQFNGFTKVILVAPTAGAGDLQTDWEDFLGTLEASDF 75
>d1ykga1 c.23.5.2 (A:63-208) Sulfite reductase alpha-component
CysJ N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 146
Score = 35.9 bits (82), Expect = 2e-04
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 31 ANNYTTEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFAQNL 78
A +++ +Y I E L++VV ST G G+PPE + L
Sbjct: 25 AAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGEGEPPEEAVALHKFL 72
>d1ja1a2 c.23.5.2 (A:63-239) NADPH-cytochrome p450 reductase,
N-terminal domain {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 177
Score = 34.7 bits (79), Expect = 5e-04
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 31 ANNYTTEVLRMDEYDMSSIE-----HEALILVVASTFGNGDPPENGQEFAQ 76
+EYD++ + ++L++ +T+G GDP +N Q+F
Sbjct: 42 RYGMRGMSADPEEYDLADLSSLPEIDKSLVVFCMATYGEGDPTDNAQDFYD 92
>d1ag9a_ c.23.5.1 (A:) Flavodoxin {Escherichia coli [TaxId: 562]}
Length = 175
Score = 34.3 bits (78), Expect = 6e-04
Identities = 7/53 (13%), Positives = 19/53 (35%)
Query: 31 ANNYTTEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFAQNLHALRI 83
+V + + +E ++L+ T+ G+ + +F L +
Sbjct: 25 LGKDVADVHDIAKSSKEDLEAYDILLLGIPTWYYGEAQCDWDDFFPTLEEIDF 77
>d1rlja_ c.23.5.7 (A:) Flavoprotein NrdI {Bacillus subtilis
[TaxId: 1423]}
Length = 135
Score = 31.1 bits (70), Expect = 0.008
Identities = 8/46 (17%), Positives = 15/46 (32%)
Query: 39 LRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFAQNLHALRIG 84
+ + ++V T G P + Q F + L +G
Sbjct: 31 FQQIRKVDEMDHVDTPFVLVTYTTNFGQVPASTQSFLEKYAHLLLG 76
>d1uxoa_ c.69.1.31 (A:) Hypothetical protein YdeN {Bacillus subtilis
[TaxId: 1423]}
Length = 186
Score = 26.2 bits (56), Expect = 0.53
Identities = 10/65 (15%), Positives = 19/65 (29%)
Query: 16 VHYANNYTTESEVHYANNYTTEVLRMDEYDMSSIEHEALILVVASTFGNGDPPENGQEFA 75
+ + ++ E + IE V+AS P ++ A
Sbjct: 89 LGGIILVSGFAKSLPTLQMLDEFTQGSFDHQKIIESAKHRAVIASKDDQIVPFSFSKDLA 148
Query: 76 QNLHA 80
Q + A
Sbjct: 149 QQIDA 153
>d1jkea_ c.110.1.1 (A:) D-Tyr tRNAtyr deacylase, DTD {Escherichia
coli [TaxId: 562]}
Length = 145
Score = 24.3 bits (53), Expect = 2.2
Identities = 8/46 (17%), Positives = 15/46 (32%), Gaps = 3/46 (6%)
Query: 47 SSIEHEALILVVASTFGNGDPPENGQEFAQNLHALRIGEDANNSIS 92
I L+L+ D + + + RI DA ++
Sbjct: 21 GEIGAGLLVLL---GVEKDDDEQKANRLCERVLGYRIFSDAEGKMN 63
>d1gqpa_ b.18.1.9 (A:) APC10/DOC1 subunit of the
anaphase-promoting complex {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 23.8 bits (51), Expect = 4.4
Identities = 10/64 (15%), Positives = 22/64 (34%)
Query: 2 EIVEKREPAFSISEVHYANNYTTESEVHYANNYTTEVLRMDEYDMSSIEHEALILVVAST 61
IV+ ++ Y + + + + + +D M ++ H AL +
Sbjct: 8 RIVDAATKDLYVNGFQEEIQYQNPTPENLQHMFHQGIEILDSARMINVTHLALWKPSSFK 67
Query: 62 FGNG 65
GN
Sbjct: 68 LGNP 71
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.127 0.349
Gapped
Lambda K H
0.267 0.0529 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 322,819
Number of extensions: 11775
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 16
Length of query: 95
Length of database: 2,407,596
Length adjustment: 58
Effective length of query: 37
Effective length of database: 1,611,256
Effective search space: 59616472
Effective search space used: 59616472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 47 (22.3 bits)