Query psy8997
Match_columns 118
No_of_seqs 107 out of 182
Neff 3.0
Searched_HMMs 46136
Date Sat Aug 17 01:01:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8997.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8997hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00575 NOS_oxygenase Nitric o 100.0 2.7E-38 5.9E-43 265.9 7.2 97 6-107 7-104 (356)
2 cd00795 NOS_oxygenase_euk Nitr 100.0 1.2E-37 2.6E-42 265.7 7.2 97 6-107 60-157 (412)
3 cd00794 NOS_oxygenase_prok Nit 100.0 1.8E-37 3.8E-42 260.8 7.1 95 6-107 7-102 (353)
4 PF02898 NO_synthase: Nitric o 100.0 6E-37 1.3E-41 258.9 7.6 90 6-100 14-103 (372)
5 COG4362 Nitric oxide synthase, 99.9 1.4E-28 3.1E-33 205.5 2.7 85 6-101 12-96 (355)
6 TIGR03824 FlgM_jcvi flagellar 55.6 25 0.00053 24.2 4.0 45 3-49 44-88 (95)
7 PF04316 FlgM: Anti-sigma-28 f 52.9 18 0.0004 22.8 2.8 25 24-49 26-50 (57)
8 KOG1179|consensus 32.0 25 0.00055 33.1 1.4 42 8-49 567-608 (649)
9 smart00035 CLa CLUSTERIN alpha 25.9 21 0.00045 29.5 -0.2 16 1-16 16-31 (216)
10 PF07862 Nif11: Nitrogen fixat 25.7 1.4E+02 0.0031 17.9 3.5 36 10-48 7-48 (49)
11 PF11684 DUF3280: Protein of u 23.0 97 0.0021 23.4 2.9 26 20-45 22-51 (140)
12 COG0562 Glf UDP-galactopyranos 22.8 34 0.00073 30.3 0.5 26 60-86 244-269 (374)
13 PF01233 NMT: Myristoyl-CoA:pr 22.1 46 0.00099 26.3 1.0 36 75-110 25-60 (162)
14 TIGR03798 ocin_TIGR03798 bacte 20.7 2E+02 0.0043 18.3 3.7 37 10-49 5-47 (64)
No 1
>cd00575 NOS_oxygenase Nitric oxide synthase (NOS) produces nitric oxide (NO) by catalyzing a five-electron heme-based oxidation of a guanidine nitrogen of L-arginine to L-citrulline via two successive monooxygenation reactions producing N(omega)-hydroxy-L-arginine (NHA) as an intermediate. In mammals, there are three distinct NOS isozymes: neuronal (nNOS or NOS-1), cytokine-inducible (iNOS or NOS-2) and endothelial (eNOS or NOS-3) . Nitric oxide synthases are homodimers. In eukaryotes, each monomer has an N-terminal oxygenase domain which binds to the substrate L-Arg, zinc, and to the cofactors heme and 5.6.7.8-(6R)-tetrahydrobiopterin (BH4) . Eukaryotic NOSs also have a C-terminal electron supplying reductase region, which is homologous to cytochrome P450 reductase and binds NADH, FAD and FMN. While prokaryotes can produce NO as a byproduct of denitrification, using a completely different set of enzymes than NOS, a few prokaryotes also have a NOS which consists solely of the NOS oxy
Probab=100.00 E-value=2.7e-38 Score=265.89 Aligned_cols=97 Identities=45% Similarity=0.709 Sum_probs=91.0
Q ss_pred hchhHHHhhcCCCCCcHHHHHHHHHHHHHHHhhccccccHHHHhhhhhhhhhccCcccccccccceeecccccccCCCCC
Q psy8997 6 CDTFPIFGISVPRSDSPAHLARWEQVQREVAQSGTYDLTETELVFGAKLAWRNSARCIGRIQWSKLQTLEWKRFDRGNCN 85 (118)
Q Consensus 6 ~dfl~qyY~s~kr~~s~a~~~Rl~eV~~eI~~tGtY~~T~eEL~fGAklAWRNS~RCIGRi~W~~LqV~~~~~~D~R~v~ 85 (118)
-+||+|||+|+++.+++++..||++|++||++||||+||.+||+||||||||||+|||||+||++|+| +|+|+|+
T Consensus 7 ~~Fi~~~y~e~~~~~~~~~~~Rl~ev~~eI~~TGtY~hT~eEL~~GAk~AWRNs~RCIGRl~W~~L~V-----~D~R~v~ 81 (356)
T cd00575 7 KDFINQYYSSIKRSGSEAHEARLEEVEKEIEATGTYQLTEEELIYGAKMAWRNAPRCIGRIQWSKLQV-----FDARDVT 81 (356)
T ss_pred HHHHHHHHHhhCcCCcHHHHHHHHHHHHHHHhcCceeCCHHHHHHHHHHHHhcCccccccccccccee-----eeccCCC
Confidence 48999999999998899999999999999999999999999999999999999999999999999999 9999999
Q ss_pred chhhhhHHHHhhcccc-CCccee
Q psy8997 86 CYGLIVPKSKREGRQD-NATSIR 107 (118)
Q Consensus 86 t~~~i~~~~~~~~~~~-~~~~~~ 107 (118)
|+++||+++.+|++.. |.-.||
T Consensus 82 t~~~m~~al~~Hl~~ATN~G~Ir 104 (356)
T cd00575 82 TAQEMFEAICNHIKYATNGGNIR 104 (356)
T ss_pred CHHHHHHHHHHHHHHhcCCCccc
Confidence 9999999999999863 444443
No 2
>cd00795 NOS_oxygenase_euk Nitric oxide synthase (NOS) eukaryotic oxygenase domain. NOS produces nitric oxide (NO) by catalyzing a five-electron heme-based oxidation of a guanidine nitrogen of L-arginine to L-citrulline via two successive monooxygenation reactions producing N(omega)-hydroxy-L-arginine (NHA) as an intermediate. In mammals, there are three distinct NOS isozymes: neuronal (nNOS or NOS-1), cytokine-inducible (iNOS or NOS-2) and endothelial (eNOS or NOS-3) . Nitric oxide synthases are homodimers. In eukaryotes, each monomer has an N-terminal oxygenase domain, which binds to the substrate L-Arg, zinc, and to the cofactors heme and 5.6.7.8-(6R)-tetrahydrobiopterin (BH4) . Eukaryotic NOS's also have a C-terminal electron supplying reductase region, which is homologous to cytochrome P450 reductase and binds NADH, FAD and FMN.
Probab=100.00 E-value=1.2e-37 Score=265.70 Aligned_cols=97 Identities=47% Similarity=0.751 Sum_probs=91.1
Q ss_pred hchhHHHhhcCCCCCcHHHHHHHHHHHHHHHhhccccccHHHHhhhhhhhhhccCcccccccccceeecccccccCCCCC
Q psy8997 6 CDTFPIFGISVPRSDSPAHLARWEQVQREVAQSGTYDLTETELVFGAKLAWRNSARCIGRIQWSKLQTLEWKRFDRGNCN 85 (118)
Q Consensus 6 ~dfl~qyY~s~kr~~s~a~~~Rl~eV~~eI~~tGtY~~T~eEL~fGAklAWRNS~RCIGRi~W~~LqV~~~~~~D~R~v~ 85 (118)
-+||+|||+|+++.++++|..||++|.+||++||||+||.+||+||||||||||+|||||+||++|+| ||+|+|+
T Consensus 60 ~~Fi~~~y~e~~~~~~~~~~~Rl~ev~~eI~~TGtY~hT~eEL~yGAk~AWRNs~RCIGRl~W~~L~V-----~D~R~v~ 134 (412)
T cd00795 60 KDFINQYYSSIKRSGSEAHLARLEEVTKEIEATGTYQLTEDELIFGAKQAWRNAPRCIGRIQWSKLQV-----FDARDCT 134 (412)
T ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHcccceeCCHHHHHHHHHHHHhcCccccCccccccCee-----eeccCCC
Confidence 58999999999999899999999999999999999999999999999999999999999999999999 9999999
Q ss_pred chhhhhHHHHhhcccc-CCccee
Q psy8997 86 CYGLIVPKSKREGRQD-NATSIR 107 (118)
Q Consensus 86 t~~~i~~~~~~~~~~~-~~~~~~ 107 (118)
|+++||+++.+|++.. |.-.||
T Consensus 135 t~~~m~~al~~Hl~~ATN~G~Ir 157 (412)
T cd00795 135 TAQEMFEAICNHIKYATNKGNLR 157 (412)
T ss_pred CHHHHHHHHHHHHHHhcCCCCcc
Confidence 9999999999999863 444443
No 3
>cd00794 NOS_oxygenase_prok Nitric oxide synthase (NOS) prokaryotic oxygenase domain. NOS produces nitric oxide (NO) by catalyzing a five-electron heme-based oxidation of a guanidine nitrogen of L-arginine to L-citrulline via two successive monooxygenation reactions producing N(omega)-hydroxy-L-arginine (NHA) as an intermediate. Nitric oxide synthases are homodimers. Most prokaryotes produce NO as a byproduct of denitrification, using a completely different set of enzymes than NOS. However, a few prokaryotes also have a NOS, consisting solely of the NOS oxygenase domain. Prokaryotic NOS binds to the substrate L-Arg, zinc, and to the cofactors heme and tetrahydrofolate.
Probab=100.00 E-value=1.8e-37 Score=260.77 Aligned_cols=95 Identities=31% Similarity=0.472 Sum_probs=88.5
Q ss_pred hchhHHHhhcCCCCCcHHHHHHHHHHHHHHHhhccccccHHHHhhhhhhhhhccCcccccccccceeecccccccCCCCC
Q psy8997 6 CDTFPIFGISVPRSDSPAHLARWEQVQREVAQSGTYDLTETELVFGAKLAWRNSARCIGRIQWSKLQTLEWKRFDRGNCN 85 (118)
Q Consensus 6 ~dfl~qyY~s~kr~~s~a~~~Rl~eV~~eI~~tGtY~~T~eEL~fGAklAWRNS~RCIGRi~W~~LqV~~~~~~D~R~v~ 85 (118)
-+||+|||+|++ +++++..||++|++||++||||+||.+||+||||||||||+|||||+||++|+| +|+|+|+
T Consensus 7 ~~Fi~~~y~e~~--~~~~~~~Rl~ev~~eI~~TGtY~hT~eEL~~GAk~AWRNs~RCIGRl~W~~L~V-----~D~R~v~ 79 (353)
T cd00794 7 RAFLTNMYEELG--ETGELNKRLAAVESEIDETGTYTHTTEELVYGAKMAWRNSNRCIGRLFWESLNV-----RDARDVR 79 (353)
T ss_pred HHHHHHHHHhcC--CcHHHHHHHHHHHHHHHhcCceeCCHHHHHHHHHHHHhcCccccccccccccee-----EeccCCC
Confidence 489999999999 488999999999999999999999999999999999999999999999999999 9999999
Q ss_pred chhhhhHHHHhhcccc-CCccee
Q psy8997 86 CYGLIVPKSKREGRQD-NATSIR 107 (118)
Q Consensus 86 t~~~i~~~~~~~~~~~-~~~~~~ 107 (118)
|+++||+++.+|++.. |.-.||
T Consensus 80 t~~~m~~al~~Hl~~ATN~G~Ir 102 (353)
T cd00794 80 TEEEVAEALLDHITEATNGGKIR 102 (353)
T ss_pred CHHHHHHHHHHHHHHhcCCCccc
Confidence 9999999999999863 444443
No 4
>PF02898 NO_synthase: Nitric oxide synthase, oxygenase domain; InterPro: IPR004030 Nitric oxide synthase (1.14.13.39 from EC) (NOS) enzymes produce nitric oxide (NO) by catalysing a five-electron oxidation of a guanidino nitrogen of L-arginine (L-Arg). Oxidation of L-Arg to L-citrulline occurs via two successive monooxygenation reactions producing N(omega)-hydroxy-L-arginine as an intermediate. 2 mol of O(2) and 1.5 mol of NADPH are consumed per mole of NO formed []. Arginine-derived NO synthesis has been identified in mammals, fish, birds, invertebrates, plants, and bacteria []. Best studied are mammals, where three distinct genes encode NOS isozymes: neuronal (nNOS or NOS-1), cytokine-inducible (iNOS or NOS-2) and endothelial (eNOS or NOS-3) []. iNOS and nNOS are soluble and found predominantly in the cytosol, while eNOS is membrane associated. The enzymes exist as homodimers, each monomer consisting of two major domains: an N-terminal oxygenase domain, which belongs to the class of haem-thiolate proteins, and a C-terminal reductase domain, which is homologous to NADPH:P450 reductase (1.6.2.4 from EC). The interdomain linker between the oxygenase and reductase domains contains a calmodulin (CaM)-binding sequence. NOSs are the only enzymes known to simultaneously require five bound cofactors animal NOS isozymes are catalytically self-sufficient. The electron flow in the NO synthase reaction is: NADPH --> FAD --> FMN --> haem --> O(2). eNOS localisation to endothelial membranes is mediated by cotranslational N-terminal myristoylation and post-translational palmitoylation []. The subcellular localisation of nNOS in skeletal muscle is mediated by anchoring of nNOS to dystrophin. nNOS contains an additional N-terminal domain, the PDZ domain []. Some bacteria, like Bacillus halodurans, Bacillus subtilis or Deinococcus radiodurans, contain homologs of NOS oxygenase domain. The pattern is directed against the N-terminal haem binding site. This entry represents the oxygenase domain of NOS.; GO: 0004517 nitric-oxide synthase activity, 0006809 nitric oxide biosynthetic process, 0055114 oxidation-reduction process; PDB: 2FBZ_X 2AMO_A 2AN0_A 1M7V_A 2FC1_A 2FC2_B 1M7Z_A 2AN2_A 2ORS_A 1QW5_B ....
Probab=100.00 E-value=6e-37 Score=258.88 Aligned_cols=90 Identities=40% Similarity=0.606 Sum_probs=80.1
Q ss_pred hchhHHHhhcCCCCCcHHHHHHHHHHHHHHHhhccccccHHHHhhhhhhhhhccCcccccccccceeecccccccCCCCC
Q psy8997 6 CDTFPIFGISVPRSDSPAHLARWEQVQREVAQSGTYDLTETELVFGAKLAWRNSARCIGRIQWSKLQTLEWKRFDRGNCN 85 (118)
Q Consensus 6 ~dfl~qyY~s~kr~~s~a~~~Rl~eV~~eI~~tGtY~~T~eEL~fGAklAWRNS~RCIGRi~W~~LqV~~~~~~D~R~v~ 85 (118)
-+||+|||+|++++++++|..||++|+++|++||||+||++||+||||||||||+|||||+||++|+| +|+||++
T Consensus 14 ~~Fi~~~y~e~~~~~~~~~~~Rl~ev~~ei~~tGtY~~T~eEL~~Gak~AWRNs~RCIGRl~W~~L~V-----~D~R~~~ 88 (372)
T PF02898_consen 14 KEFIDQYYSELKRSGSEAHERRLEEVRREIETTGTYTHTYEELTYGAKMAWRNSNRCIGRLFWSSLQV-----FDARHVT 88 (372)
T ss_dssp HHHHHHHHHHTTSTTCHHHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHHT-TT-TTGGGTTG-EE-----EEETTS-
T ss_pred HHHHHHHHHhcCCccchHHHHHHHHHHhhhcCCCCCccChHHHHhhhHHHhccCCcCCCcccccccee-----ecCCCCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred chhhhhHHHHhhccc
Q psy8997 86 CYGLIVPKSKREGRQ 100 (118)
Q Consensus 86 t~~~i~~~~~~~~~~ 100 (118)
|+++||+++.+|++.
T Consensus 89 t~~~~~~al~~Hl~~ 103 (372)
T PF02898_consen 89 TAEEMFEALCEHLRY 103 (372)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999999985
No 5
>COG4362 Nitric oxide synthase, oxygenase domain [Inorganic ion transport and metabolism / Amino acid transport and metabolism]
Probab=99.94 E-value=1.4e-28 Score=205.45 Aligned_cols=85 Identities=32% Similarity=0.469 Sum_probs=80.4
Q ss_pred hchhHHHhhcCCCCCcHHHHHHHHHHHHHHHhhccccccHHHHhhhhhhhhhccCcccccccccceeecccccccCCCCC
Q psy8997 6 CDTFPIFGISVPRSDSPAHLARWEQVQREVAQSGTYDLTETELVFGAKLAWRNSARCIGRIQWSKLQTLEWKRFDRGNCN 85 (118)
Q Consensus 6 ~dfl~qyY~s~kr~~s~a~~~Rl~eV~~eI~~tGtY~~T~eEL~fGAklAWRNS~RCIGRi~W~~LqV~~~~~~D~R~v~ 85 (118)
-.||..||.++. +..||.+|..||+.||||.||.+||+||||||||||||||||+||++|.| +|+|+++
T Consensus 12 ~aFl~~~yeE~g------~~~rL~di~~ei~etGty~hT~~EL~~GAkmAWRNSnRCiGRLfWesL~V-----iD~Rdl~ 80 (355)
T COG4362 12 RAFLRRFYEEMG------IEKRLPDILREIDETGTYVHTSEELTHGAKMAWRNSNRCIGRLFWESLNV-----IDLRDLN 80 (355)
T ss_pred HHHHHHHHHHhC------cccchHHHHHHHHhhCCeeccHHHHhhhhhhhhhcccchHHHHHHhhccc-----chhhhcc
Confidence 369999999998 47899999999999999999999999999999999999999999999999 9999999
Q ss_pred chhhhhHHHHhhcccc
Q psy8997 86 CYGLIVPKSKREGRQD 101 (118)
Q Consensus 86 t~~~i~~~~~~~~~~~ 101 (118)
|+++|.+++..|+-+.
T Consensus 81 t~e~~~eal~~Hi~~A 96 (355)
T COG4362 81 TEEEVYEALLQHITDA 96 (355)
T ss_pred cHHHHHHHHHHHHHhh
Confidence 9999999999998763
No 6
>TIGR03824 FlgM_jcvi flagellar biosynthesis anti-sigma factor FlgM. FlgM interacts with and inhibits the alternative sigma factor sigma(28) FliA. The C-terminus of FlgM contains the sigma(28)-binding domain.
Probab=55.57 E-value=25 Score=24.20 Aligned_cols=45 Identities=9% Similarity=0.290 Sum_probs=32.1
Q ss_pred chhhchhHHHhhcCCCCCcHHHHHHHHHHHHHHHhhccccccHHHHh
Q psy8997 3 SPFCDTFPIFGISVPRSDSPAHLARWEQVQREVAQSGTYDLTETELV 49 (118)
Q Consensus 3 ~~~~dfl~qyY~s~kr~~s~a~~~Rl~eV~~eI~~tGtY~~T~eEL~ 49 (118)
||-.-.|.++...+.- .++--..|+++++..|. .|+|....+.+.
T Consensus 44 S~~a~~l~~~~~~~~~-~p~v~~~kV~~ik~aI~-~G~Y~vd~~~iA 88 (95)
T TIGR03824 44 SSAAQQLQSLEAALAS-SPDVDAEKVAEIKAAIA-NGSYKVDAEKIA 88 (95)
T ss_pred CHHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHH-cCCCCCCHHHHH
Confidence 4555556666666553 35556789999999994 799999887765
No 7
>PF04316 FlgM: Anti-sigma-28 factor, FlgM; InterPro: IPR007412 FlgM binds and inhibits the activity of the transcription factor sigma 28. Inhibition of sigma 28 prevents the expression of genes from flagellar transcriptional class 3, which include genes for the filament and chemotaxis. Correctly assembled basal body-hook structures export FlgM, relieving inhibition of sigma 28 and allowing expression of class 3 genes. NMR studies show that free FlgM is mostly unfolded, which may facilitate its export. The C-terminal half of FlgM adopts a tertiary structure when it binds to sigma 28. All mutations in FlgM that prevent sigma 28 inhibition affect the C-terminal domain and is the region thought to constitute the binding domain. A minimal binding domain has been identified between Glu 64 and Arg 88 in Salmonella typhimurium (P26477 from SWISSPROT).The N-terminal portion remains unstructured and may be necessary for recognition by the export machinery [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0019861 flagellum; PDB: 1RP3_B 1SC5_B.
Probab=52.86 E-value=18 Score=22.82 Aligned_cols=25 Identities=16% Similarity=0.456 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHhhccccccHHHHh
Q psy8997 24 HLARWEQVQREVAQSGTYDLTETELV 49 (118)
Q Consensus 24 ~~~Rl~eV~~eI~~tGtY~~T~eEL~ 49 (118)
-..|+++++..|+. |+|....+.+.
T Consensus 26 r~~kV~~ik~~I~~-G~Y~vd~~~iA 50 (57)
T PF04316_consen 26 RAEKVAEIKAAIAS-GTYKVDAEKIA 50 (57)
T ss_dssp SHHHHHHHHHHHHT-T-----HHHHH
T ss_pred hHHHHHHHHHHHHc-CCCCCCHHHHH
Confidence 45799999999975 99999887765
No 8
>KOG1179|consensus
Probab=32.04 E-value=25 Score=33.09 Aligned_cols=42 Identities=21% Similarity=0.309 Sum_probs=32.3
Q ss_pred hhHHHhhcCCCCCcHHHHHHHHHHHHHHHhhccccccHHHHh
Q psy8997 8 TFPIFGISVPRSDSPAHLARWEQVQREVAQSGTYDLTETELV 49 (118)
Q Consensus 8 fl~qyY~s~kr~~s~a~~~Rl~eV~~eI~~tGtY~~T~eEL~ 49 (118)
++.+.|+.+..+-+.--.+|--.++++|+.||||.+-..||.
T Consensus 567 d~~~l~~~l~~~LP~YA~P~FlRl~~~i~~TgTFKl~K~~L~ 608 (649)
T KOG1179|consen 567 DLEKLYQHLRENLPSYARPRFLRLQDEIEKTGTFKLQKTELQ 608 (649)
T ss_pred hHHHHHHHHHhhCccccchHHHHHHhhhhcccchhhHHHHHH
Confidence 456666666654444456788889999999999999998886
No 9
>smart00035 CLa CLUSTERIN alpha chain.
Probab=25.94 E-value=21 Score=29.47 Aligned_cols=16 Identities=31% Similarity=0.519 Sum_probs=15.0
Q ss_pred CCchhhchhHHHhhcC
Q psy8997 1 MFSPFCDTFPIFGISV 16 (118)
Q Consensus 1 ~~~~~~dfl~qyY~s~ 16 (118)
||.||.+|+.+.|.++
T Consensus 16 mFqpf~~m~~~~~~~~ 31 (216)
T smart00035 16 MFQPFFDMIHQAQQAM 31 (216)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 7999999999999987
No 10
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=25.72 E-value=1.4e+02 Score=17.85 Aligned_cols=36 Identities=28% Similarity=0.370 Sum_probs=20.5
Q ss_pred HHHhhcCCCCCcHHHHHHHHHH------HHHHHhhccccccHHHH
Q psy8997 10 PIFGISVPRSDSPAHLARWEQV------QREVAQSGTYDLTETEL 48 (118)
Q Consensus 10 ~qyY~s~kr~~s~a~~~Rl~eV------~~eI~~tGtY~~T~eEL 48 (118)
..|+..++ ..++...++..+ -.-....| |..|.+||
T Consensus 7 ~~Fl~~~~--~d~~l~~~l~~~~~~~e~~~lA~~~G-y~ft~~el 48 (49)
T PF07862_consen 7 KAFLEKVK--SDPELREQLKACQNPEEVVALAREAG-YDFTEEEL 48 (49)
T ss_pred HHHHHHHh--cCHHHHHHHHhcCCHHHHHHHHHHcC-CCCCHHHh
Confidence 44444444 255666665553 33333445 99999987
No 11
>PF11684 DUF3280: Protein of unknown function (DUF2380); InterPro: IPR021698 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=23.05 E-value=97 Score=23.37 Aligned_cols=26 Identities=31% Similarity=0.616 Sum_probs=19.6
Q ss_pred CcHHHHHHHHHH----HHHHHhhccccccH
Q psy8997 20 DSPAHLARWEQV----QREVAQSGTYDLTE 45 (118)
Q Consensus 20 ~s~a~~~Rl~eV----~~eI~~tGtY~~T~ 45 (118)
..+++..||..+ ++.++++|.|..-.
T Consensus 22 ~~~~e~~RL~~~~~~lr~~L~~~G~y~vVd 51 (140)
T PF11684_consen 22 QTPAEAARLAALTDQLREALAESGRYRVVD 51 (140)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCeEEec
Confidence 377899998765 56677899997643
No 12
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=22.82 E-value=34 Score=30.35 Aligned_cols=26 Identities=31% Similarity=0.838 Sum_probs=21.4
Q ss_pred CcccccccccceeecccccccCCCCCc
Q psy8997 60 ARCIGRIQWSKLQTLEWKRFDRGNCNC 86 (118)
Q Consensus 60 ~RCIGRi~W~~LqV~~~~~~D~R~v~t 86 (118)
.=|-||+.|.+|.. ||++.|..+-+.
T Consensus 244 dy~~GrL~YRSL~F-e~e~~~~~~~Qg 269 (374)
T COG0562 244 DYCFGRLPYRSLDF-EWERLNTGDFQG 269 (374)
T ss_pred ccccccccceeece-EEEEcccccccc
Confidence 35899999999998 999998865443
No 13
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=22.09 E-value=46 Score=26.28 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=28.2
Q ss_pred ccccccCCCCCchhhhhHHHHhhccccCCcceecch
Q psy8997 75 EWKRFDRGNCNCYGLIVPKSKREGRQDNATSIRLDE 110 (118)
Q Consensus 75 ~~~~~D~R~v~t~~~i~~~~~~~~~~~~~~~~~~~~ 110 (118)
+|...|.-+-...+++++-+.+|-++|.-..+|++=
T Consensus 25 ~W~~~dl~d~~~l~ely~lL~~nYVEDdd~~fRf~Y 60 (162)
T PF01233_consen 25 EWSTLDLNDDEELKELYELLNENYVEDDDNMFRFDY 60 (162)
T ss_dssp EEEE--TTSHHHHHHHHHHHHHHSSBTTTSSEEE--
T ss_pred EEEecCCCCHHHHHHHHHHHHhcCccCCcceEEeeC
Confidence 566677788888899999999999999988888763
No 14
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=20.65 E-value=2e+02 Score=18.31 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=21.3
Q ss_pred HHHhhcCCCCCcHHHHHHHHH------HHHHHHhhccccccHHHHh
Q psy8997 10 PIFGISVPRSDSPAHLARWEQ------VQREVAQSGTYDLTETELV 49 (118)
Q Consensus 10 ~qyY~s~kr~~s~a~~~Rl~e------V~~eI~~tGtY~~T~eEL~ 49 (118)
+.|+..++. .+.+..++.. +..-....| |..|.+||.
T Consensus 5 ~~Fl~~~~~--d~~L~~~l~~~~~~e~~~~lA~~~G-f~ft~~el~ 47 (64)
T TIGR03798 5 KAFLEKVKT--DPDLREKLKAAEDPEDRVAIAKEAG-FEFTGEDLK 47 (64)
T ss_pred HHHHHHHHc--CHHHHHHHHHcCCHHHHHHHHHHcC-CCCCHHHHH
Confidence 344444443 4555555443 334444455 999999995
Done!