Query psy8997
Match_columns 118
No_of_seqs 107 out of 182
Neff 3.0
Searched_HMMs 29240
Date Sat Aug 17 01:01:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8997.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8997hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n5w_A Nitric oxide synthase; 100.0 6.4E-38 2.2E-42 266.8 8.5 90 6-100 63-152 (422)
2 3e7m_A Nitric oxide synthase, 100.0 1.1E-37 3.8E-42 266.0 8.5 90 6-100 73-162 (433)
3 2ort_A Nitric oxide synthase, 100.0 1.9E-37 6.7E-42 261.8 8.5 90 6-100 25-114 (389)
4 1mjt_A Nitric-oxide synthase h 100.0 2.6E-37 9E-42 258.1 7.8 89 6-100 8-96 (347)
5 1d0c_A Bovine endothelial nitr 100.0 7E-37 2.4E-41 261.6 8.5 90 6-100 92-181 (444)
6 2flq_A Nitric oxide synthase; 100.0 4.2E-37 1.4E-41 258.8 7.0 90 6-101 21-110 (375)
7 1m7v_A Nitric oxide synthase; 100.0 7.5E-37 2.6E-41 256.5 7.3 88 6-100 12-99 (363)
8 3nrx_A Protein regulator of cy 50.6 2.6 8.7E-05 30.6 -0.6 41 3-52 90-130 (130)
9 1rp3_B Anti sigma factor FLGM; 27.9 57 0.0019 21.4 3.3 29 21-50 53-81 (88)
10 3g1g_A GAG polyprotein, capsid 22.9 21 0.00073 24.7 0.4 17 3-19 12-28 (87)
11 2lxr_A NADH dehydrogenase I su 22.4 25 0.00085 24.0 0.7 18 77-96 2-19 (76)
12 3g21_A GAG polyprotein, capsid 22.4 24 0.00081 24.0 0.5 20 3-22 13-32 (77)
13 2lm0_A AF4/FMR2 family member 21.8 28 0.00095 25.6 0.8 19 27-45 79-97 (125)
No 1
>3n5w_A Nitric oxide synthase; heme enzyme, substrate inhibitor, Zn oxidoreductase, oxidoreductase-oxidoreductase inhibitor COM; HET: HEM XFJ; 1.73A {Rattus norvegicus} SCOP: d.174.1.1 PDB: 2hx3_A* 2hx4_A* 3b3m_A* 3b3n_A* 3b3o_A* 3b3p_A* 3hsn_A* 3hso_A* 3hsp_A* 3jt3_A* 3jt4_A* 3jt5_A* 3jt6_A* 3jt7_A* 3jt8_A* 3jt9_A* 3jta_A* 3n2r_A* 3n5v_A* 1om4_A* ...
Probab=100.00 E-value=6.4e-38 Score=266.79 Aligned_cols=90 Identities=40% Similarity=0.694 Sum_probs=88.4
Q ss_pred hchhHHHhhcCCCCCcHHHHHHHHHHHHHHHhhccccccHHHHhhhhhhhhhccCcccccccccceeecccccccCCCCC
Q psy8997 6 CDTFPIFGISVPRSDSPAHLARWEQVQREVAQSGTYDLTETELVFGAKLAWRNSARCIGRIQWSKLQTLEWKRFDRGNCN 85 (118)
Q Consensus 6 ~dfl~qyY~s~kr~~s~a~~~Rl~eV~~eI~~tGtY~~T~eEL~fGAklAWRNS~RCIGRi~W~~LqV~~~~~~D~R~v~ 85 (118)
.+||+|||+|++++++++|..||++|++||++||||+||.+||+||||||||||+|||||+||++|+| ||+|||+
T Consensus 63 ~~Fi~q~y~e~~~~~~~~~~~Rl~eV~~eI~~tGTY~~T~eEL~~GAk~AWRNs~RCIGRl~W~~L~V-----~D~R~~~ 137 (422)
T 3n5w_A 63 KEFLDQYYSSIKRFGSKAHMDRLEEVNKEIESTSTYQLKDTELIYGAKHAWRNASRCVGRIQWSKLQV-----FDARDCT 137 (422)
T ss_dssp HHHHHHHHHHTTCTTSHHHHHHHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHTCTTCTTGGGTTCCEE-----EECTTCC
T ss_pred HHHHHHHHHhccccCcHHHHHHHHHHHHHHHhhCCccCCHHHHhhcchhhhccCccccCcccccccee-----eecccCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred chhhhhHHHHhhccc
Q psy8997 86 CYGLIVPKSKREGRQ 100 (118)
Q Consensus 86 t~~~i~~~~~~~~~~ 100 (118)
|+++||+++.+|++.
T Consensus 138 t~~~m~~al~~Hi~~ 152 (422)
T 3n5w_A 138 TAHGMFNYICNHVKY 152 (422)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999999986
No 2
>3e7m_A Nitric oxide synthase, inducible; NOS, heme, tetrahydrobiopterin, oxido calmodulin-binding, FAD, FMN, iron, metal-binding, NADP, oxidoreductase; HET: HEM H4B AT2; 2.00A {Mus musculus} SCOP: d.174.1.1 PDB: 2y37_A* 1r35_A* 3e67_A* 3e68_A* 3e6l_A* 3e6n_A* 3e6o_A* 3e6t_A* 3e7i_A* 3e65_A* 3e7t_A* 3eai_A* 3ebd_A* 3ebf_A* 3nqs_A* 1m8d_A* 1m8e_A* 1m8h_A* 1m8i_A* 1m9t_A* ...
Probab=100.00 E-value=1.1e-37 Score=265.97 Aligned_cols=90 Identities=41% Similarity=0.665 Sum_probs=88.4
Q ss_pred hchhHHHhhcCCCCCcHHHHHHHHHHHHHHHhhccccccHHHHhhhhhhhhhccCcccccccccceeecccccccCCCCC
Q psy8997 6 CDTFPIFGISVPRSDSPAHLARWEQVQREVAQSGTYDLTETELVFGAKLAWRNSARCIGRIQWSKLQTLEWKRFDRGNCN 85 (118)
Q Consensus 6 ~dfl~qyY~s~kr~~s~a~~~Rl~eV~~eI~~tGtY~~T~eEL~fGAklAWRNS~RCIGRi~W~~LqV~~~~~~D~R~v~ 85 (118)
.+||+|||+|++++++++|..||++|++||++||||+||.+||+||||||||||+|||||+||++|+| ||+|||+
T Consensus 73 ~~Fi~q~y~e~~~~~~~~~~~Rl~eV~~eI~~tGTY~~T~eEL~~GAk~AWRNs~RCIGRl~W~~L~V-----~D~R~~~ 147 (433)
T 3e7m_A 73 IEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAWRNAPRCIGRIQWSNLQV-----FDARNCS 147 (433)
T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHTCTTCTTGGGTTCCEE-----EECTTCC
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHhhCCccCCHHHHHhhhHhhhccCCcCcCccccccCee-----eecccCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred chhhhhHHHHhhccc
Q psy8997 86 CYGLIVPKSKREGRQ 100 (118)
Q Consensus 86 t~~~i~~~~~~~~~~ 100 (118)
|+++||+++.+|++.
T Consensus 148 t~~~m~~al~~Hi~~ 162 (433)
T 3e7m_A 148 TAQEMFQHICRHILY 162 (433)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999999986
No 3
>2ort_A Nitric oxide synthase, inducible; L-arginine monooxygenase, heme, dimerization, inhibitor, NOS, oxidoreductase; HET: HEM 342; 1.87A {Mus musculus} PDB: 1dd7_A* 2oro_A* 2orq_A* 2orr_A* 2ors_A* 2orp_A* 1nos_A* 1noc_A* 2nos_A* 1df1_A* 1nod_A* 2nod_A* 3nod_A* 3nw2_A* 2bhj_A* 1dwv_A* 1dww_A* 1dwx_A* 1n2n_A* 1qw4_A* ...
Probab=100.00 E-value=1.9e-37 Score=261.80 Aligned_cols=90 Identities=41% Similarity=0.665 Sum_probs=88.0
Q ss_pred hchhHHHhhcCCCCCcHHHHHHHHHHHHHHHhhccccccHHHHhhhhhhhhhccCcccccccccceeecccccccCCCCC
Q psy8997 6 CDTFPIFGISVPRSDSPAHLARWEQVQREVAQSGTYDLTETELVFGAKLAWRNSARCIGRIQWSKLQTLEWKRFDRGNCN 85 (118)
Q Consensus 6 ~dfl~qyY~s~kr~~s~a~~~Rl~eV~~eI~~tGtY~~T~eEL~fGAklAWRNS~RCIGRi~W~~LqV~~~~~~D~R~v~ 85 (118)
.+||+|||+|++++++++|..||++|++||++||||+||.+||+||||||||||+|||||+||++|+| ||+|||+
T Consensus 25 ~~Fi~~~y~e~~~~~~~~~~~Rl~ev~~eI~~tGTY~~T~eEL~~GAk~AWRNs~RCIGRl~W~~L~V-----~D~R~v~ 99 (389)
T 2ort_A 25 IEFINQYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAWRNAPRCIGRIQWSNLQV-----FDARNCS 99 (389)
T ss_dssp HHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHTCTTCGGGGGTTCCEE-----EECTTCC
T ss_pred HHHHHHHHHhcCcccchHHHHHHHHHHHHHHccCCccCCHHHHHHHHHHhhccCCcCcCccccccCee-----eeccCCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred chhhhhHHHHhhccc
Q psy8997 86 CYGLIVPKSKREGRQ 100 (118)
Q Consensus 86 t~~~i~~~~~~~~~~ 100 (118)
|+++||+++.+|++.
T Consensus 100 t~~~m~~al~~Hi~~ 114 (389)
T 2ort_A 100 TAQEMFQHICRHILY 114 (389)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999999986
No 4
>1mjt_A Nitric-oxide synthase homolog; sanos, NO, NOS, bacterial, MRSA, seitu, oxidoreductase; HET: SUC HEM NAD; 2.40A {Staphylococcus aureus} SCOP: d.174.1.1
Probab=100.00 E-value=2.6e-37 Score=258.11 Aligned_cols=89 Identities=29% Similarity=0.481 Sum_probs=86.9
Q ss_pred hchhHHHhhcCCCCCcHHHHHHHHHHHHHHHhhccccccHHHHhhhhhhhhhccCcccccccccceeecccccccCCCCC
Q psy8997 6 CDTFPIFGISVPRSDSPAHLARWEQVQREVAQSGTYDLTETELVFGAKLAWRNSARCIGRIQWSKLQTLEWKRFDRGNCN 85 (118)
Q Consensus 6 ~dfl~qyY~s~kr~~s~a~~~Rl~eV~~eI~~tGtY~~T~eEL~fGAklAWRNS~RCIGRi~W~~LqV~~~~~~D~R~v~ 85 (118)
.+||+|||+|+++ ++++|..||++|++||++||||+||.+||+||||||||||+|||||+||++|+| ||+|||+
T Consensus 8 ~~Fi~~~y~e~~~-~~~~~~~Rl~ev~~eI~~tGtY~~T~eEL~~GAk~AWRNs~RCIGRl~W~~L~V-----~D~R~~~ 81 (347)
T 1mjt_A 8 QAFIENMYKECHY-ETQIINKRLHDIELEIKETGTYTHTEEELIYGAKMAWRNSNRCIGRLFWDSLNV-----IDARDVT 81 (347)
T ss_dssp HHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHTCTTCTTGGGGGGCEE-----EEETTCC
T ss_pred HHHHHHHHHhcCC-CchHHHHHHHHHHHHHHccCCCcCCHHHHHHHHHHHhccCccCCCccCCCcCee-----eecccCC
Confidence 4799999999999 788999999999999999999999999999999999999999999999999999 9999999
Q ss_pred chhhhhHHHHhhccc
Q psy8997 86 CYGLIVPKSKREGRQ 100 (118)
Q Consensus 86 t~~~i~~~~~~~~~~ 100 (118)
|+++||+++.+|++.
T Consensus 82 t~~~~~~al~~Hi~~ 96 (347)
T 1mjt_A 82 DEASFLSSITYHITQ 96 (347)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999999986
No 5
>1d0c_A Bovine endothelial nitric oxide synthase heme DOM; alpha-beta fold, oxidoreductase; HET: HEM INE; 1.65A {Bos taurus} SCOP: d.174.1.1 PDB: 1d0o_A* 1d1v_A* 1d1w_A* 1d1x_A* 1d1y_A* 1dm6_A* 1dm7_A* 1dm8_A* 1dmi_A* 1dmj_A* 1dmk_A* 1ed4_A* 1ed5_A* 1ed6_A* 1foi_A* 1foj_A* 1fol_A* 1foo_A* 1fop_A* 1nse_A* ...
Probab=100.00 E-value=7e-37 Score=261.63 Aligned_cols=90 Identities=46% Similarity=0.723 Sum_probs=88.1
Q ss_pred hchhHHHhhcCCCCCcHHHHHHHHHHHHHHHhhccccccHHHHhhhhhhhhhccCcccccccccceeecccccccCCCCC
Q psy8997 6 CDTFPIFGISVPRSDSPAHLARWEQVQREVAQSGTYDLTETELVFGAKLAWRNSARCIGRIQWSKLQTLEWKRFDRGNCN 85 (118)
Q Consensus 6 ~dfl~qyY~s~kr~~s~a~~~Rl~eV~~eI~~tGtY~~T~eEL~fGAklAWRNS~RCIGRi~W~~LqV~~~~~~D~R~v~ 85 (118)
.+||+|||.|+++.++++|..||++|++||++||||+||.+||+||||||||||+|||||+||++|+| ||+|||+
T Consensus 92 ~~Fi~~~y~e~~~~~~~~~~~Rl~ev~~eI~~tGTY~hT~eEL~~GAk~AWRNs~RCIGRl~W~~L~V-----~D~R~v~ 166 (444)
T 1d0c_A 92 RDFINQYYSSIKRSGSQAHEERLQEVEAEVASTGTYHLRESELVFGAKQAWRNAPRCVGRIQWGKLQV-----FDARDCS 166 (444)
T ss_dssp HHHHHHHHHHTTCTTSHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHTCTTCTTGGGTTSCEE-----EECTTCC
T ss_pred HHHHHHHHHhcccccchhHHHHHHHHHHHHHccCCccCCHHHHHhhhHhhhccCCcccCccccccCee-----eecccCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred chhhhhHHHHhhccc
Q psy8997 86 CYGLIVPKSKREGRQ 100 (118)
Q Consensus 86 t~~~i~~~~~~~~~~ 100 (118)
|+++||+++.+|++.
T Consensus 167 t~~~m~~al~~Hi~~ 181 (444)
T 1d0c_A 167 SAQEMFTYICNHIKY 181 (444)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999999986
No 6
>2flq_A Nitric oxide synthase; thermostable enzyme, oxidoreductase; HET: ARG HEM; 3.20A {Geobacillus stearothermophilus}
Probab=100.00 E-value=4.2e-37 Score=258.83 Aligned_cols=90 Identities=28% Similarity=0.395 Sum_probs=87.3
Q ss_pred hchhHHHhhcCCCCCcHHHHHHHHHHHHHHHhhccccccHHHHhhhhhhhhhccCcccccccccceeecccccccCCCCC
Q psy8997 6 CDTFPIFGISVPRSDSPAHLARWEQVQREVAQSGTYDLTETELVFGAKLAWRNSARCIGRIQWSKLQTLEWKRFDRGNCN 85 (118)
Q Consensus 6 ~dfl~qyY~s~kr~~s~a~~~Rl~eV~~eI~~tGtY~~T~eEL~fGAklAWRNS~RCIGRi~W~~LqV~~~~~~D~R~v~ 85 (118)
.+||+|||+|+++ ++++|..||++|++||++||||+||.+||+||||||||||+|||||+||++|+| ||+|||+
T Consensus 21 ~~Fi~~~y~e~~~-~~~~~~~Rl~ev~~eI~~tGTY~~T~eEL~~GAk~AWRNs~RCIGRl~W~~L~V-----~D~R~v~ 94 (375)
T 2flq_A 21 EQFIIASYRELGK-SEQEIKRRVNEIRWEVEQTGTYRHTYEELSYGAKMAWRHSNRCIGRLFWQSLHV-----IDAREAV 94 (375)
T ss_dssp HHHHHHHHHHTTC-CSHHHHHHHHHHHHHHHHHSSCCCCTTTHHHHHHHHHHTCTTCSCCGGGTTCEE-----EEETTCC
T ss_pred HHHHHHHHHhcCC-CchHHHHHHHHHHHHHHccCCccCCHHHHHHHHHHHhccCccCCCcccCCcCee-----eecccCC
Confidence 4799999999999 789999999999999999999999999999999999999999999999999999 9999999
Q ss_pred chhhhhHHHHhhcccc
Q psy8997 86 CYGLIVPKSKREGRQD 101 (118)
Q Consensus 86 t~~~i~~~~~~~~~~~ 101 (118)
|+++||+++.+|++..
T Consensus 95 t~~~m~~al~~Hi~~A 110 (375)
T 2flq_A 95 TEEEVFSYLFHHIEVA 110 (375)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999999863
No 7
>1m7v_A Nitric oxide synthase; pterin oxygenase, bacteria, heme, oxidoreductase; HET: ARG HEM THG; 1.95A {Bacillus subtilis} SCOP: d.174.1.1 PDB: 2fbz_X* 2fc1_A* 1m7z_A* 2fc2_A* 2an0_A* 2amo_A* 2an2_A*
Probab=100.00 E-value=7.5e-37 Score=256.49 Aligned_cols=88 Identities=27% Similarity=0.439 Sum_probs=85.7
Q ss_pred hchhHHHhhcCCCCCcHHHHHHHHHHHHHHHhhccccccHHHHhhhhhhhhhccCcccccccccceeecccccccCCCCC
Q psy8997 6 CDTFPIFGISVPRSDSPAHLARWEQVQREVAQSGTYDLTETELVFGAKLAWRNSARCIGRIQWSKLQTLEWKRFDRGNCN 85 (118)
Q Consensus 6 ~dfl~qyY~s~kr~~s~a~~~Rl~eV~~eI~~tGtY~~T~eEL~fGAklAWRNS~RCIGRi~W~~LqV~~~~~~D~R~v~ 85 (118)
.+||+|||+|+++ +++|..||++|++||++||||+||.+||+||||||||||+|||||+||++|+| ||+|||+
T Consensus 12 ~~Fi~~~y~e~~~--~~~~~~Rl~ev~~eI~~tGTY~~T~eEL~~GAk~AWRNs~RCIGRl~W~~L~V-----~D~R~~~ 84 (363)
T 1m7v_A 12 KAFIAECYQELGK--EEEVKDRLDSIKSEIDRTGSYVHTKEELEHGAKMAWRNSNRCIGRLFWNSLNV-----IDRRDVR 84 (363)
T ss_dssp HHHHHHHHHHHTC--GGGHHHHHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHTCTTCSCGGGGGGCEE-----EECTTCC
T ss_pred HHHHHHHHHhcCC--chHHHHHHHHHHHHHHccCCccCCHHHHHHHHHHHhccCccCCCccCCCcCee-----eeccCCC
Confidence 4799999999999 68999999999999999999999999999999999999999999999999999 9999999
Q ss_pred chhhhhHHHHhhccc
Q psy8997 86 CYGLIVPKSKREGRQ 100 (118)
Q Consensus 86 t~~~i~~~~~~~~~~ 100 (118)
|+++||+++.+|++.
T Consensus 85 t~~~~~~al~~Hi~~ 99 (363)
T 1m7v_A 85 TKEDVRDALFHHIET 99 (363)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999999986
No 8
>3nrx_A Protein regulator of cytokinesis 1; spectrin fold, microtubule binding domain, protein binding; 1.75A {Homo sapiens} PDB: 3nry_A
Probab=50.61 E-value=2.6 Score=30.56 Aligned_cols=41 Identities=20% Similarity=0.218 Sum_probs=25.3
Q ss_pred chhhchhHHHhhcCCCCCcHHHHHHHHHHHHHHHhhccccccHHHHhhhh
Q psy8997 3 SPFCDTFPIFGISVPRSDSPAHLARWEQVQREVAQSGTYDLTETELVFGA 52 (118)
Q Consensus 3 ~~~~dfl~qyY~s~kr~~s~a~~~Rl~eV~~eI~~tGtY~~T~eEL~fGA 52 (118)
.||++.|.+.|.........+-. | .+..+. .+|..|+.||+
T Consensus 90 ~~~le~l~eqw~~~r~~KE~eK~-~-R~~kk~-------~~~e~e~~~gs 130 (130)
T 3nrx_A 90 QKFMEYVAEQWEMHRLEKERAKQ-E-RQLKNK-------KQTETEMLYGS 130 (130)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHH-H-HHHHHH-------HHHHHHHHHCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH-H-HHHHHH-------HHHHHHhccCC
Confidence 37899998877776643222222 2 222222 68999999996
No 9
>1rp3_B Anti sigma factor FLGM; transcription; 2.30A {Aquifex aeolicus} SCOP: a.137.11.1 PDB: 1sc5_B
Probab=27.87 E-value=57 Score=21.44 Aligned_cols=29 Identities=10% Similarity=0.361 Sum_probs=22.2
Q ss_pred cHHHHHHHHHHHHHHHhhccccccHHHHhh
Q psy8997 21 SPAHLARWEQVQREVAQSGTYDLTETELVF 50 (118)
Q Consensus 21 s~a~~~Rl~eV~~eI~~tGtY~~T~eEL~f 50 (118)
++--..|++++...|+ .|||....+.++=
T Consensus 53 ~dir~~kV~~iK~aI~-~GtY~vd~~~iA~ 81 (88)
T 1rp3_B 53 EKDLEKKVKELKEKIE-KGEYEVSDEKVVK 81 (88)
T ss_dssp CSSHHHHHHHHHHHHH-TTCCCCCHHHHHH
T ss_pred chhhHHHHHHHHHHHH-cCCCCCCHHHHHH
Confidence 3445678999999884 7999998877653
No 10
>3g1g_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 2.01A {Rous sarcoma virus}
Probab=22.92 E-value=21 Score=24.72 Aligned_cols=17 Identities=24% Similarity=0.102 Sum_probs=14.8
Q ss_pred chhhchhHHHhhcCCCC
Q psy8997 3 SPFCDTFPIFGISVPRS 19 (118)
Q Consensus 3 ~~~~dfl~qyY~s~kr~ 19 (118)
.||.||++-+|..+..+
T Consensus 12 EPF~dfVdRl~kal~~e 28 (87)
T 3g1g_A 12 ESFVDFANRLIKAVEGS 28 (87)
T ss_dssp CCHHHHHHHHHHHHHHS
T ss_pred CcHHHHHHHHHHHHHHh
Confidence 59999999999988764
No 11
>2lxr_A NADH dehydrogenase I subunit E; HP1264, oxidoreductase; NMR {Helicobacter pylori}
Probab=22.37 E-value=25 Score=23.97 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=12.4
Q ss_pred ccccCCCCCchhhhhHHHHh
Q psy8997 77 KRFDRGNCNCYGLIVPKSKR 96 (118)
Q Consensus 77 ~~~D~R~v~t~~~i~~~~~~ 96 (118)
||+|+||+.. .++..+.+
T Consensus 2 kR~DLRhLk~--~f~~rm~e 19 (76)
T 2lxr_A 2 KRFDLRPLKA--GIFERLEE 19 (76)
T ss_dssp CEEECGGGTT--TTHHHHHH
T ss_pred cccchhhhHH--HHHHHHHH
Confidence 7999999984 45554443
No 12
>3g21_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 0.90A {Rous sarcoma virus} PDB: 3g1i_A 3g28_A 3g29_A 3g26_A 3g0v_A
Probab=22.36 E-value=24 Score=23.95 Aligned_cols=20 Identities=30% Similarity=0.257 Sum_probs=16.6
Q ss_pred chhhchhHHHhhcCCCCCcH
Q psy8997 3 SPFCDTFPIFGISVPRSDSP 22 (118)
Q Consensus 3 ~~~~dfl~qyY~s~kr~~s~ 22 (118)
.||.||++-+|..+..+..+
T Consensus 13 EPF~dfVdRl~kal~~e~~~ 32 (77)
T 3g21_A 13 ESFVDFANRLIKAVEGSDLP 32 (77)
T ss_dssp CCHHHHHHHHHHHHHTSSSC
T ss_pred ccHHHHHHHHHHHHHHhhCh
Confidence 49999999999998875444
No 13
>2lm0_A AF4/FMR2 family member 1/protein AF-9 chimera; intrinsically disordered, nuclear protein; NMR {Homo sapiens}
Probab=21.77 E-value=28 Score=25.60 Aligned_cols=19 Identities=16% Similarity=0.434 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhhccccccH
Q psy8997 27 RWEQVQREVAQSGTYDLTE 45 (118)
Q Consensus 27 Rl~eV~~eI~~tGtY~~T~ 45 (118)
+|++|-.-|++||.|..|.
T Consensus 79 ~lq~iv~li~~tG~~~it~ 97 (125)
T 2lm0_A 79 ILQQIVNLIEETGHFHITN 97 (125)
T ss_dssp SHHHHHHHHHTSCCEEECS
T ss_pred HHHHHHHHHHhcCceeeec
Confidence 5889999999999998765
Done!