RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8997
(118 letters)
>gnl|CDD|238410 cd00795, NOS_oxygenase_euk, Nitric oxide synthase (NOS) eukaryotic
oxygenase domain. NOS produces nitric oxide (NO) by
catalyzing a five-electron heme-based oxidation of a
guanidine nitrogen of L-arginine to L-citrulline via two
successive monooxygenation reactions producing
N(omega)-hydroxy-L-arginine (NHA) as an intermediate. In
mammals, there are three distinct NOS isozymes: neuronal
(nNOS or NOS-1), cytokine-inducible (iNOS or NOS-2) and
endothelial (eNOS or NOS-3) . Nitric oxide synthases are
homodimers. In eukaryotes, each monomer has an
N-terminal oxygenase domain, which binds to the
substrate L-Arg, zinc, and to the cofactors heme and
5.6.7.8-(6R)-tetrahydrobiopterin (BH4) . Eukaryotic
NOS's also have a C-terminal electron supplying
reductase region, which is homologous to cytochrome P450
reductase and binds NADH, FAD and FMN.
Length = 412
Score = 115 bits (289), Expect = 1e-31
Identities = 43/71 (60%), Positives = 51/71 (71%), Gaps = 5/71 (7%)
Query: 15 SVPRSDSPAHLARWEQVQREVAQSGTYDLTETELVFGAKLAWRNSARCIGRIQWSKLQTL 74
S+ RS S AHLAR E+V +E+ +GTY LTE EL+FGAK AWRN+ RCIGRIQWSKLQ
Sbjct: 69 SIKRSGSEAHLARLEEVTKEIEATGTYQLTEDELIFGAKQAWRNAPRCIGRIQWSKLQV- 127
Query: 75 EWKRFDRGNCN 85
FD +C
Sbjct: 128 ----FDARDCT 134
>gnl|CDD|202456 pfam02898, NO_synthase, Nitric oxide synthase, oxygenase domain.
Length = 366
Score = 111 bits (278), Expect = 2e-30
Identities = 42/61 (68%), Positives = 49/61 (80%)
Query: 15 SVPRSDSPAHLARWEQVQREVAQSGTYDLTETELVFGAKLAWRNSARCIGRIQWSKLQTL 74
S+ RS S AHLAR E+V +E+ +GTY LTETELVFGAK AWRN+ RCIGRIQWSKLQ
Sbjct: 23 SIKRSKSEAHLARLEEVNKEIEATGTYQLTETELVFGAKQAWRNAPRCIGRIQWSKLQVF 82
Query: 75 E 75
+
Sbjct: 83 D 83
>gnl|CDD|238321 cd00575, NOS_oxygenase, Nitric oxide synthase (NOS) produces
nitric oxide (NO) by catalyzing a five-electron
heme-based oxidation of a guanidine nitrogen of
L-arginine to L-citrulline via two successive
monooxygenation reactions producing
N(omega)-hydroxy-L-arginine (NHA) as an intermediate.
In mammals, there are three distinct NOS isozymes:
neuronal (nNOS or NOS-1), cytokine-inducible (iNOS or
NOS-2) and endothelial (eNOS or NOS-3) . Nitric oxide
synthases are homodimers. In eukaryotes, each monomer
has an N-terminal oxygenase domain which binds to the
substrate L-Arg, zinc, and to the cofactors heme and
5.6.7.8-(6R)-tetrahydrobiopterin (BH4) . Eukaryotic
NOSs also have a C-terminal electron supplying
reductase region, which is homologous to cytochrome
P450 reductase and binds NADH, FAD and FMN. While
prokaryotes can produce NO as a byproduct of
denitrification, using a completely different set of
enzymes than NOS, a few prokaryotes also have a NOS
which consists solely of the NOS oxygenase domain.
Prokaryotic NOS binds to the substrate L-Arg, zinc, and
to the cofactors heme and tetrahydrofolate.
Length = 356
Score = 110 bits (276), Expect = 3e-30
Identities = 40/71 (56%), Positives = 51/71 (71%), Gaps = 5/71 (7%)
Query: 15 SVPRSDSPAHLARWEQVQREVAQSGTYDLTETELVFGAKLAWRNSARCIGRIQWSKLQTL 74
S+ RS S AH AR E+V++E+ +GTY LTE EL++GAK+AWRN+ RCIGRIQWSKLQ
Sbjct: 16 SIKRSGSEAHEARLEEVEKEIEATGTYQLTEEELIYGAKMAWRNAPRCIGRIQWSKLQV- 74
Query: 75 EWKRFDRGNCN 85
FD +
Sbjct: 75 ----FDARDVT 81
>gnl|CDD|238409 cd00794, NOS_oxygenase_prok, Nitric oxide synthase (NOS)
prokaryotic oxygenase domain. NOS produces nitric oxide
(NO) by catalyzing a five-electron heme-based oxidation
of a guanidine nitrogen of L-arginine to L-citrulline
via two successive monooxygenation reactions producing
N(omega)-hydroxy-L-arginine (NHA) as an intermediate.
Nitric oxide synthases are homodimers. Most prokaryotes
produce NO as a byproduct of denitrification, using a
completely different set of enzymes than NOS. However,
a few prokaryotes also have a NOS, consisting solely of
the NOS oxygenase domain. Prokaryotic NOS binds to the
substrate L-Arg, zinc, and to the cofactors heme and
tetrahydrofolate.
Length = 353
Score = 66.7 bits (163), Expect = 3e-14
Identities = 25/46 (54%), Positives = 32/46 (69%)
Query: 26 ARWEQVQREVAQSGTYDLTETELVFGAKLAWRNSARCIGRIQWSKL 71
R V+ E+ ++GTY T ELV+GAK+AWRNS RCIGR+ W L
Sbjct: 25 KRLAAVESEIDETGTYTHTTEELVYGAKMAWRNSNRCIGRLFWESL 70
>gnl|CDD|226804 COG4362, COG4362, Nitric oxide synthase, oxygenase domain
[Inorganic ion transport and metabolism / Amino acid
transport and metabolism].
Length = 355
Score = 61.4 bits (149), Expect = 2e-12
Identities = 24/49 (48%), Positives = 32/49 (65%)
Query: 27 RWEQVQREVAQSGTYDLTETELVFGAKLAWRNSARCIGRIQWSKLQTLE 75
R + RE+ ++GTY T EL GAK+AWRNS RCIGR+ W L ++
Sbjct: 27 RLPDILREIDETGTYVHTSEELTHGAKMAWRNSNRCIGRLFWESLNVID 75
>gnl|CDD|233136 TIGR00805, oat, sodium-independent organic anion transporter. The
Organo Anion Transporter (OAT) Family (TC
2.A.60)Proteins of the OAT family catalyze the
Na+-independent facilitated transport of organic anions
such as bromosulfobromophthalein and prostaglandins as
well as conjugated and unconjugated bile acids
(taurocholate and cholate, respectively). These
transporters have been characterized in mammals, but
homologues are present in C. elegans and A. thaliana.
Some of the mammalian proteins exhibit a high degree of
tissue specificity. For example, the rat OAT is found at
high levels in liver and kidney and at lower levels in
other tissues. These proteins possess 10-12 putative
a-helical transmembrane spanners. They may catalyze
electrogenic anion uniport or anion exchange.
Length = 633
Score = 27.0 bits (60), Expect = 3.0
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 1 MFSPFCDTFPIFGISVPRSDSPAHLA 26
+F C++ P+ G++ P +D ++
Sbjct: 419 LFLIGCESAPVAGVNNPSTDQSIYVE 444
>gnl|CDD|221166 pfam11684, DUF3280, Protein of unknown function (DUF2380). This
family of proteins with unknown function appears to be
restricted to Proteobacteria.
Length = 140
Score = 26.1 bits (58), Expect = 3.6
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 21 SPAHLARW----EQVQREVAQSGTYDLTETELVFGAKLAWRNSARCIG 64
+ A AR + ++ ++A+SG Y L + V N A+C G
Sbjct: 23 TAAEQARLAAVTDALREDLAESGRYRLVDLAPVAAEIAKIANLAKCGG 70
>gnl|CDD|223862 COG0791, Spr, Cell wall-associated hydrolases (invasion-associated
proteins) [Cell envelope biogenesis, outer membrane].
Length = 197
Score = 25.7 bits (56), Expect = 5.4
Identities = 10/39 (25%), Positives = 12/39 (30%), Gaps = 7/39 (17%)
Query: 12 FGISVPRSDSPAHLARWEQVQREVAQSGTYDLTETELVF 50
GI +PR+ V Q G LVF
Sbjct: 115 VGIQLPRTTRADQWNVGTAVDDSDLQPGD-------LVF 146
>gnl|CDD|176757 cd08779, Death_PIDD, Death Domain of p53-induced protein with a
death domain. Death domain (DD) found in PIDD
(p53-induced protein with a death domain) and similar
proteins. PIDD is a component of the PIDDosome complex,
which is an oligomeric caspase-activating complex
involved in caspase-2 activation and plays a role in
mediating stress-induced apoptosis. The PIDDosome
complex is composed of three components, PIDD, RAIDD and
caspase-2, which interact through their DDs and DD-like
domains. The DD of PIDD interacts with the DD of RAIDD,
which also contains a Caspase Activation and Recruitment
Domain (CARD) that interacts with the caspase-2 CARD.
Autoproteolysis of PIDD determines the downstream
signaling event, between pro-survival NF-kB or pro-death
caspase-2 activation. In general, DDs are
protein-protein interaction domains found in a variety
of domain architectures. Their common feature is that
they form homodimers by self-association or heterodimers
by associating with other members of the DD superfamily
including CARD, DED (Death Effector Domain), and PYRIN.
They serve as adaptors in signaling pathways and can
recruit other proteins into signaling complexes.
Length = 86
Score = 25.1 bits (55), Expect = 6.3
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 76 WKRFDRGNCNCYGLIVPKSKREGRQDNATSIR 107
W + G+ + G +V + GRQD A +R
Sbjct: 52 WAQRQAGDPDAVGKLVTALEESGRQDLADEVR 83
>gnl|CDD|224701 COG1787, COG1787, Predicted endonuclease distantly related to
archaeal Holliday junction resolvase and Mrr-like
restriction enzymes [Defense mechanisms].
Length = 217
Score = 25.6 bits (56), Expect = 6.6
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 7/51 (13%)
Query: 29 EQVQREVAQSGTYD------LTETELVFGA-KLAWRNSARCIGRIQWSKLQ 72
+ +Q VA Y +T + A KLA NS I R + S+
Sbjct: 162 KAIQEIVASKAYYGCEKAKVVTNGSYTYAAQKLAQANSVELIDRDELSEFI 212
>gnl|CDD|181375 PRK08310, PRK08310, amidase; Provisional.
Length = 395
Score = 25.7 bits (57), Expect = 6.7
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Query: 10 PIFGISVPRSDSPAHLARWEQVQR-----EVAQSGTYDLTETELVFGAKLAWR 57
P G + P S P L W + R E ++ ++ G +A R
Sbjct: 228 PHLGPAKPASVPPLSLDEWYEAFRVLQAAEAWETHGAWISSGNPQLGPGVADR 280
>gnl|CDD|183103 PRK11370, PRK11370, YciI-like protein; Reviewed.
Length = 99
Score = 24.9 bits (55), Expect = 7.3
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 6/30 (20%)
Query: 11 IFGISVPRS------DSPAHLARWEQVQRE 34
I+ VP S PAHLAR + +Q E
Sbjct: 5 IYAQDVPNSLEKRLSVRPAHLARLQLLQDE 34
>gnl|CDD|237846 PRK14876, PRK14876, conjugal transfer mating pair stabilization
protein TraN; Provisional.
Length = 928
Score = 25.6 bits (56), Expect = 9.4
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 23 AHLARWEQVQREVAQSGTYDL 43
AH+ +E+ QR V QSG ++
Sbjct: 204 AHIPEYERCQRVVDQSGDCEV 224
>gnl|CDD|183757 PRK12800, fliF, flagellar MS-ring protein; Reviewed.
Length = 574
Score = 25.4 bits (55), Expect = 9.8
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 11 IFGISVPRSDSPAHLARWEQVQRE 34
+ I+ P SD+ H A++EQV+R+
Sbjct: 228 MLSIADPNSDAAQHAAQFEQVRRQ 251
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.423
Gapped
Lambda K H
0.267 0.0823 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,859,155
Number of extensions: 467721
Number of successful extensions: 364
Number of sequences better than 10.0: 1
Number of HSP's gapped: 364
Number of HSP's successfully gapped: 19
Length of query: 118
Length of database: 10,937,602
Length adjustment: 81
Effective length of query: 37
Effective length of database: 7,344,928
Effective search space: 271762336
Effective search space used: 271762336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.0 bits)