RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8997
(118 letters)
>1d0c_A Bovine endothelial nitric oxide synthase heme DOM; alpha-beta fold,
oxidoreductase; HET: HEM INE; 1.65A {Bos taurus} SCOP:
d.174.1.1 PDB: 1d0o_A* 1d1v_A* 1d1w_A* 1d1x_A* 1d1y_A*
1dm6_A* 1dm7_A* 1dm8_A* 1dmi_A* 1dmj_A* 1dmk_A* 1ed4_A*
1ed5_A* 1ed6_A* 1foi_A* 1foj_A* 1fol_A* 1foo_A* 1fop_A*
1nse_A* ...
Length = 444
Score = 91.2 bits (226), Expect = 6e-23
Identities = 37/60 (61%), Positives = 45/60 (75%)
Query: 15 SVPRSDSPAHLARWEQVQREVAQSGTYDLTETELVFGAKLAWRNSARCIGRIQWSKLQTL 74
S+ RS S AH R ++V+ EVA +GTY L E+ELVFGAK AWRN+ RC+GRIQW KLQ
Sbjct: 101 SIKRSGSQAHEERLQEVEAEVASTGTYHLRESELVFGAKQAWRNAPRCVGRIQWGKLQVF 160
>2ort_A Nitric oxide synthase, inducible; L-arginine monooxygenase, heme,
dimerization, inhibitor, NOS, oxidoreductase; HET: HEM
342; 1.87A {Mus musculus} PDB: 1dd7_A* 2oro_A* 2orq_A*
2orr_A* 2ors_A* 2orp_A* 1nos_A* 1noc_A* 2nos_A* 1df1_A*
1nod_A* 2nod_A* 3nod_A* 3nw2_A* 2bhj_A* 1dwv_A* 1dww_A*
1dwx_A* 1n2n_A* 1qw4_A* ...
Length = 389
Score = 89.9 bits (223), Expect = 9e-23
Identities = 32/60 (53%), Positives = 39/60 (65%)
Query: 15 SVPRSDSPAHLARWEQVQREVAQSGTYDLTETELVFGAKLAWRNSARCIGRIQWSKLQTL 74
S + HLAR E V +E+ +GTY LT EL+F K+AWRN+ RCIGRIQWS LQ
Sbjct: 34 SFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAWRNAPRCIGRIQWSNLQVF 93
>3e7m_A Nitric oxide synthase, inducible; NOS, heme, tetrahydrobiopterin,
oxido calmodulin-binding, FAD, FMN, iron, metal-binding,
NADP, oxidoreductase; HET: HEM H4B AT2; 2.00A {Mus
musculus} SCOP: d.174.1.1 PDB: 2y37_A* 1r35_A* 3e67_A*
3e68_A* 3e6l_A* 3e6n_A* 3e6o_A* 3e6t_A* 3e7i_A* 3e65_A*
3e7t_A* 3eai_A* 3ebd_A* 3ebf_A* 3nqs_A* 1m8d_A* 1m8e_A*
1m8h_A* 1m8i_A* 1m9t_A* ...
Length = 433
Score = 89.2 bits (221), Expect = 2e-22
Identities = 32/60 (53%), Positives = 39/60 (65%)
Query: 15 SVPRSDSPAHLARWEQVQREVAQSGTYDLTETELVFGAKLAWRNSARCIGRIQWSKLQTL 74
S + HLAR E V +E+ +GTY LT EL+F K+AWRN+ RCIGRIQWS LQ
Sbjct: 82 SFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAWRNAPRCIGRIQWSNLQVF 141
>3n5w_A Nitric oxide synthase; heme enzyme, substrate inhibitor, Zn
oxidoreductase, oxidoreductase-oxidoreductase inhibitor
COM; HET: HEM XFJ; 1.73A {Rattus norvegicus} PDB:
2hx3_A* 2hx4_A* 3b3m_A* 3b3n_A* 3b3o_A* 3b3p_A* 3hsn_A*
3hso_A* 3hsp_A* 3jt3_A* 3jt4_A* 3jt5_A* 3jt6_A* 3jt7_A*
3jt8_A* 3jt9_A* 3jta_A* 3n2r_A* 3n5v_A* 1om4_A* ...
Length = 422
Score = 88.4 bits (219), Expect = 5e-22
Identities = 33/60 (55%), Positives = 45/60 (75%)
Query: 15 SVPRSDSPAHLARWEQVQREVAQSGTYDLTETELVFGAKLAWRNSARCIGRIQWSKLQTL 74
S+ R S AH+ R E+V +E+ + TY L +TEL++GAK AWRN++RC+GRIQWSKLQ
Sbjct: 72 SIKRFGSKAHMDRLEEVNKEIESTSTYQLKDTELIYGAKHAWRNASRCVGRIQWSKLQVF 131
>1mjt_A Nitric-oxide synthase homolog; sanos, NO, NOS, bacterial, MRSA,
seitu, oxidoreductase; HET: SUC HEM NAD; 2.40A
{Staphylococcus aureus} SCOP: d.174.1.1
Length = 347
Score = 86.5 bits (214), Expect = 1e-21
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 18 RSDSPAHLARWEQVQREVAQSGTYDLTETELVFGAKLAWRNSARCIGRIQWSKLQTL 74
++ R ++ E+ ++GTY TE EL++GAK+AWRNS RCIGR+ W L +
Sbjct: 19 HYETQIINKRLHDIELEIKETGTYTHTEEELIYGAKMAWRNSNRCIGRLFWDSLNVI 75
>2flq_A Nitric oxide synthase; thermostable enzyme, oxidoreductase; HET:
ARG HEM; 3.20A {Geobacillus stearothermophilus}
Length = 375
Score = 85.7 bits (212), Expect = 3e-21
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 15 SVPRSDSPAHLARWEQVQREVAQSGTYDLTETELVFGAKLAWRNSARCIGRIQWSKLQTL 74
+ +S+ R +++ EV Q+GTY T EL +GAK+AWR+S RCIGR+ W L
Sbjct: 30 ELGKSEQEIK-RRVNEIRWEVEQTGTYRHTYEELSYGAKMAWRHSNRCIGRLFWQSLHV- 87
Query: 75 EWKRFDRGNCN 85
D
Sbjct: 88 ----IDAREAV 94
>1m7v_A Nitric oxide synthase; pterin oxygenase, bacteria, heme,
oxidoreductase; HET: ARG HEM THG; 1.95A {Bacillus
subtilis} SCOP: d.174.1.1 PDB: 2fbz_X* 2fc1_A* 1m7z_A*
2fc2_A* 2an0_A* 2amo_A* 2an2_A*
Length = 363
Score = 85.7 bits (212), Expect = 3e-21
Identities = 22/55 (40%), Positives = 34/55 (61%)
Query: 20 DSPAHLARWEQVQREVAQSGTYDLTETELVFGAKLAWRNSARCIGRIQWSKLQTL 74
R + ++ E+ ++G+Y T+ EL GAK+AWRNS RCIGR+ W+ L +
Sbjct: 24 KEEEVKDRLDSIKSEIDRTGSYVHTKEELEHGAKMAWRNSNRCIGRLFWNSLNVI 78
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.0 bits (59), Expect = 1.3
Identities = 7/28 (25%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 92 PKSKREGRQDNATSIR-LDEEEKDEKEK 118
P+S R+ R++ ++ LD K +++
Sbjct: 84 PESIRKWREEQRKRLQELDAASKVMEQE 111
>3bey_A Conserved protein O27018; TT217, NESG, structural genomics,
PSI-2, PROT structure initiative; 2.40A
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 96
Score = 25.9 bits (57), Expect = 1.8
Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 3/51 (5%)
Query: 18 RSDSPAHLARWEQVQREVAQSGTYDLTETELVFGAKLAWRNSARCIGRIQW 68
+ P ++ + V G E L+ +A + RC +
Sbjct: 9 LEELPEVAESFKNFREAVRSEGKLTEREKLLIS---VACSVAVRCDACTRR 56
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.1 bits (59), Expect = 1.9
Identities = 28/137 (20%), Positives = 43/137 (31%), Gaps = 40/137 (29%)
Query: 6 CDTFP----IFGISVPRSDSPAHLARWEQVQRE----VAQSGTYDLTETEL--------V 49
T P I S+ D A W+ V + + +S L E V
Sbjct: 323 LTTNPRRLSIIAESI--RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 50 FGAKLAWRNSARCIGRIQWSKLQTLEWKRFDRGNCNCYGLIVPKSKR----EGRQDNAT- 104
F SA I L + W + + ++V K + E + +T
Sbjct: 381 F------PPSA----HIPTILLSLI-WFDVIK---SDVMVVVNKLHKYSLVEKQPKESTI 426
Query: 105 ---SIRLDEEEKDEKEK 118
SI L+ + K E E
Sbjct: 427 SIPSIYLELKVKLENEY 443
Score = 25.6 bits (55), Expect = 6.2
Identities = 20/132 (15%), Positives = 40/132 (30%), Gaps = 30/132 (22%)
Query: 9 FPIFGISVPRSDSPAHLARWEQVQR-------------EVAQSGTYDLTETELVFGAKLA 55
F IF +++ +SP + E +Q+ + + + + + L
Sbjct: 182 FKIFWLNLKNCNSPETVL--EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 56 WRNSARC--IGRIQWSKLQTLEWKRFDRGNCNCYGLIVPKSK---REGRQDNATSIRLDE 110
+ C + + + W F+ C L+ + K T I LD
Sbjct: 240 SKPYENCLLVLLNVQNA-KA--WNAFNLS---CKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 111 E----EKDEKEK 118
DE +
Sbjct: 294 HSMTLTPDEVKS 305
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.6 bits (58), Expect = 2.4
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 19/60 (31%)
Query: 76 WKRFDRGNCNCYGL----IV---PKSK------REGRQ--DNATSIR----LDEEEKDEK 116
W R D + YG IV P + +G++ +N +++ +D + K EK
Sbjct: 1646 WNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEK 1705
>4dej_A Glutathione S-transferase related protein; transferase-like
protein, transcription regulation; 2.90A {Idiomarina
loihiensis}
Length = 231
Score = 25.8 bits (57), Expect = 3.7
Identities = 6/39 (15%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 1 MFSPFCDTFPIFGISVPRSDSPAHLARWEQ--VQREVAQ 37
+P P +GI + + + ++ +R+ Q
Sbjct: 159 YLAPLLWRLPAYGIDLEGQGAKE-IKQYMVRLFERKTFQ 196
>1yy7_A SSPA, stringent starvation protein A; GST fold, transcription; HET:
CIT; 2.02A {Yersinia pestis}
Length = 213
Score = 25.7 bits (57), Expect = 3.9
Identities = 7/40 (17%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 1 MFSPFCDTFPIFGISVPRSDSPAHLARWEQ--VQREVAQS 38
+P P+ GI + S L + +R+ +
Sbjct: 160 YLAPLLWRLPVLGIEFTGAGSKE-LKGYMTRVFERDAFLA 198
>2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine
methyltransferase; structural genomics, target 6426D,
PSI; 1.90A {Streptococcus mutans} PDB: 3l7s_A 3l7r_A
3t0c_A
Length = 755
Score = 26.0 bits (57), Expect = 4.4
Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 6/64 (9%)
Query: 20 DSPAH--LARWEQVQREVAQSGTYDLTETELV--FGAKLAWRNSARCIGRIQWSKLQTLE 75
D H R + V+ + + T+ V +G++ G +Q + T+E
Sbjct: 469 DVLVHGEFERVDMVEFFGQKLAGFTTTKFGWVQSYGSRAVKP--PIIYGDVQHLEPITVE 526
Query: 76 WKRF 79
+
Sbjct: 527 ETVY 530
>3dbo_B Uncharacterized protein; toxin antitoxin complex, vapbc, structural
genomics, PSI-2, protein structure initiative; 1.76A
{Mycobacterium tuberculosis}
Length = 150
Score = 25.2 bits (55), Expect = 4.7
Identities = 12/73 (16%), Positives = 18/73 (24%)
Query: 27 RWEQVQREVAQSGTYDLTETELVFGAKLAWRNSARCIGRIQWSKLQTLEWKRFDRGNCNC 86
R + T +T EL G A R + +E D
Sbjct: 37 RQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESVADMETLPVDDDAARM 96
Query: 87 YGLIVPKSKREGR 99
+ + GR
Sbjct: 97 WARLRIHLAESGR 109
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD
cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP:
a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*
Length = 659
Score = 25.3 bits (55), Expect = 7.0
Identities = 6/35 (17%), Positives = 14/35 (40%)
Query: 11 IFGISVPRSDSPAHLARWEQVQREVAQSGTYDLTE 45
+F ++ + +W + ++ G Y TE
Sbjct: 105 MFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTE 139
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.423
Gapped
Lambda K H
0.267 0.0702 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,770,890
Number of extensions: 85373
Number of successful extensions: 155
Number of sequences better than 10.0: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 20
Length of query: 118
Length of database: 6,701,793
Length adjustment: 81
Effective length of query: 37
Effective length of database: 4,440,192
Effective search space: 164287104
Effective search space used: 164287104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.5 bits)