RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8997
         (118 letters)



>d1om4a_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 418

 Score =  105 bits (263), Expect = 1e-28
 Identities = 33/58 (56%), Positives = 45/58 (77%)

Query: 15  SVPRSDSPAHLARWEQVQREVAQSGTYDLTETELVFGAKLAWRNSARCIGRIQWSKLQ 72
           S+ R  S AH+ R E+V +E+  + TY L +TEL++GAK AWRN++RC+GRIQWSKLQ
Sbjct: 70  SIKRFGSKAHMDRLEEVNKEIESTSTYQLKDTELIYGAKHAWRNASRCVGRIQWSKLQ 127


>d1q2oa_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 416

 Score =  104 bits (262), Expect = 1e-28
 Identities = 37/58 (63%), Positives = 45/58 (77%)

Query: 15  SVPRSDSPAHLARWEQVQREVAQSGTYDLTETELVFGAKLAWRNSARCIGRIQWSKLQ 72
           S+ RS S AH  R ++V+ EVA +GTY L E+ELVFGAK AWRN+ RC+GRIQW KLQ
Sbjct: 73  SIKRSGSQAHEERLQEVEAEVASTGTYHLRESELVFGAKQAWRNAPRCVGRIQWGKLQ 130


>d3e7ma1 d.174.1.1 (A:77-497) Nitric oxide (NO) synthase oxygenase
           domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 421

 Score =  104 bits (262), Expect = 2e-28
 Identities = 32/58 (55%), Positives = 39/58 (67%)

Query: 15  SVPRSDSPAHLARWEQVQREVAQSGTYDLTETELVFGAKLAWRNSARCIGRIQWSKLQ 72
           S   +    HLAR E V +E+  +GTY LT  EL+F  K+AWRN+ RCIGRIQWS LQ
Sbjct: 71  SFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMAWRNAPRCIGRIQWSNLQ 128


>d1mjta_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase
          domain {Staphylococcus aureus [TaxId: 1280]}
          Length = 346

 Score = 99.0 bits (247), Expect = 8e-27
 Identities = 24/55 (43%), Positives = 35/55 (63%)

Query: 18 RSDSPAHLARWEQVQREVAQSGTYDLTETELVFGAKLAWRNSARCIGRIQWSKLQ 72
            ++     R   ++ E+ ++GTY  TE EL++GAK+AWRNS RCIGR+ W  L 
Sbjct: 18 HYETQIINKRLHDIELEIKETGTYTHTEEELIYGAKMAWRNSNRCIGRLFWDSLN 72


>d1m7va_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase
          domain {Bacillus subtilis [TaxId: 1423]}
          Length = 363

 Score = 98.2 bits (245), Expect = 2e-26
 Identities = 22/52 (42%), Positives = 33/52 (63%)

Query: 21 SPAHLARWEQVQREVAQSGTYDLTETELVFGAKLAWRNSARCIGRIQWSKLQ 72
                R + ++ E+ ++G+Y  T+ EL  GAK+AWRNS RCIGR+ W+ L 
Sbjct: 25 EEEVKDRLDSIKSEIDRTGSYVHTKEELEHGAKMAWRNSNRCIGRLFWNSLN 76


>d1vkma_ c.138.1.1 (A:) Hypothetical protein TM1464 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 292

 Score = 29.1 bits (65), Expect = 0.099
 Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 5/45 (11%)

Query: 1   MFSPFCDTFPIF-----GISVPRSDSPAHLARWEQVQREVAQSGT 40
           +     + FP+F     G  VPR ++   + +  +  +E+    T
Sbjct: 174 LVGFRTNEFPLFFSRKSGRRVPRIENVEEVLKIYESMKEMELEKT 218


>d2q0ta1 a.152.1.1 (A:1-257) Hypothetical protein Bxeno_B2006
          {Burkholderia xenovorans [TaxId: 36873]}
          Length = 257

 Score = 24.2 bits (52), Expect = 5.3
 Identities = 5/48 (10%), Positives = 11/48 (22%), Gaps = 3/48 (6%)

Query: 21 SPAHLARWEQVQREVAQSGTYDLTETELVFGAKLAWRNSARCIGRIQW 68
           P  +  + +      +    D      +    LA    A  +     
Sbjct: 35 DPRFVDAYLKFAGVPQRRNHLDDKTRAFIA---LAADACATQLYAPGV 79


>d2i9ua2 c.1.9.9 (A:67-376) Guanine deaminase {Clostridium
           acetobutylicum [TaxId: 1488]}
          Length = 310

 Score = 23.6 bits (49), Expect = 8.3
 Identities = 2/14 (14%), Positives = 6/14 (42%)

Query: 53  KLAWRNSARCIGRI 66
            +A +      G++
Sbjct: 295 YMATKKGGSFFGKV 308


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.423 

Gapped
Lambda     K      H
   0.267   0.0669    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 445,053
Number of extensions: 17168
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 8
Length of query: 118
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 44
Effective length of database: 1,391,576
Effective search space: 61229344
Effective search space used: 61229344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.0 bits)