BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy90
(125 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 229 bits (585), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 107/137 (78%), Positives = 119/137 (86%), Gaps = 12/137 (8%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
MSGIA+ RL++ERK WRKDHPFGFVA P KNPDG++NLMNWEC+IPGKKGTPWE G +KL
Sbjct: 1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
RM+FKDDYPS+PPKCKFEPPLFHPNVYPS DW+PAITIKQILLGIQ+LL
Sbjct: 61 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVXLSILEEDKDWRPAITIKQILLGIQELL 120
Query: 109 NEPNIKDPAQAEAYTIY 125
NEPNI+DPAQAEAYTIY
Sbjct: 121 NEPNIQDPAQAEAYTIY 137
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 229 bits (585), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 107/137 (78%), Positives = 119/137 (86%), Gaps = 12/137 (8%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
MSGIA+ RL++ERK WRKDHPFGFVA P KNPDG++NLMNWEC+IPGKKGTPWE G +KL
Sbjct: 1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
RM+FKDDYPS+PPKCKFEPPLFHPNVYPS DW+PAITIKQILLGIQ+LL
Sbjct: 61 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSILEEDKDWRPAITIKQILLGIQELL 120
Query: 109 NEPNIKDPAQAEAYTIY 125
NEPNI+DPAQAEAYTIY
Sbjct: 121 NEPNIQDPAQAEAYTIY 137
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 229 bits (584), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 107/137 (78%), Positives = 119/137 (86%), Gaps = 12/137 (8%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
MSGIA+ RL++ERK WRKDHPFGFVA P KNPDG++NLMNWEC+IPGKKGTPWE G +KL
Sbjct: 1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
RM+FKDDYPS+PPKCKFEPPLFHPNVYPS DW+PAITIKQILLGIQ+LL
Sbjct: 61 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 120
Query: 109 NEPNIKDPAQAEAYTIY 125
NEPNI+DPAQAEAYTIY
Sbjct: 121 NEPNIQDPAQAEAYTIY 137
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 229 bits (584), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 107/137 (78%), Positives = 119/137 (86%), Gaps = 12/137 (8%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
MSGIA+ RL++ERK WRKDHPFGFVA P KNPDG++NLMNWEC+IPGKKGTPWE G +KL
Sbjct: 2 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 61
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
RM+FKDDYPS+PPKCKFEPPLFHPNVYPS DW+PAITIKQILLGIQ+LL
Sbjct: 62 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 121
Query: 109 NEPNIKDPAQAEAYTIY 125
NEPNI+DPAQAEAYTIY
Sbjct: 122 NEPNIQDPAQAEAYTIY 138
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 229 bits (584), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 107/137 (78%), Positives = 119/137 (86%), Gaps = 12/137 (8%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
MSGIA+ RL++ERK WRKDHPFGFVA P KNPDG++NLMNWEC+IPGKKGTPWE G +KL
Sbjct: 3 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 62
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
RM+FKDDYPS+PPKCKFEPPLFHPNVYPS DW+PAITIKQILLGIQ+LL
Sbjct: 63 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 122
Query: 109 NEPNIKDPAQAEAYTIY 125
NEPNI+DPAQAEAYTIY
Sbjct: 123 NEPNIQDPAQAEAYTIY 139
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 229 bits (583), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 107/137 (78%), Positives = 119/137 (86%), Gaps = 12/137 (8%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
MSGIA+ RL++ERK WRKDHPFGFVA P KNPDG++NLMNWEC+IPGKKGTPWE G +KL
Sbjct: 3 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 62
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
RM+FKDDYPS+PPKCKFEPPLFHPNVYPS DW+PAITIKQILLGIQ+LL
Sbjct: 63 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 122
Query: 109 NEPNIKDPAQAEAYTIY 125
NEPNI+DPAQAEAYTIY
Sbjct: 123 NEPNIQDPAQAEAYTIY 139
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 229 bits (583), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 107/137 (78%), Positives = 119/137 (86%), Gaps = 12/137 (8%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
MSGIA+ RL++ERK WRKDHPFGFVA P KNPDG++NLMNWEC+IPGKKGTPWE G +KL
Sbjct: 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
RM+FKDDYPS+PPKCKFEPPLFHPNVYPS DW+PAITIKQILLGIQ+LL
Sbjct: 64 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 123
Query: 109 NEPNIKDPAQAEAYTIY 125
NEPNI+DPAQAEAYTIY
Sbjct: 124 NEPNIQDPAQAEAYTIY 140
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 228 bits (582), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 107/137 (78%), Positives = 119/137 (86%), Gaps = 12/137 (8%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
MSGIA+ RL++ERK WRKDHPFGFVA P KNPDG++NLMNWEC+IPGKKGTPWE G +KL
Sbjct: 6 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 65
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
RM+FKDDYPS+PPKCKFEPPLFHPNVYPS DW+PAITIKQILLGIQ+LL
Sbjct: 66 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 125
Query: 109 NEPNIKDPAQAEAYTIY 125
NEPNI+DPAQAEAYTIY
Sbjct: 126 NEPNIQDPAQAEAYTIY 142
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 227 bits (578), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 106/137 (77%), Positives = 118/137 (86%), Gaps = 12/137 (8%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
MSGIA+ RL++ERK WRKDHPFGFVA P KNPDG++NLMNWEC+IPGKKGTPWE G +KL
Sbjct: 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
RM+FKDDYPS+PPKCKFEPPLFHP VYPS DW+PAITIKQILLGIQ+LL
Sbjct: 64 RMLFKDDYPSSPPKCKFEPPLFHPQVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 123
Query: 109 NEPNIKDPAQAEAYTIY 125
NEPNI+DPAQAEAYTIY
Sbjct: 124 NEPNIQDPAQAEAYTIY 140
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 227 bits (578), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 106/137 (77%), Positives = 118/137 (86%), Gaps = 12/137 (8%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
MSGIA+ RL++ERK WRKDHPFGFVA P KNPDG++NLMNWEC+IPGKKGTPWE G +KL
Sbjct: 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
RM+FKDDYPS+PPKCKFEPPLFHPNVYPS DW+PAITIKQILLGIQ+LL
Sbjct: 64 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 123
Query: 109 NEPNIKDPAQAEAYTIY 125
NEPNI+ PAQAEAYTIY
Sbjct: 124 NEPNIQSPAQAEAYTIY 140
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 226 bits (576), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 106/137 (77%), Positives = 118/137 (86%), Gaps = 12/137 (8%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
MSGIA+ RL++ERK WRKDHPFGFVA P KNPDG++NLMNWEC+IPGKKGTPWE G +KL
Sbjct: 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
RM+FKDDYPS+PPKCKFEPPLFHPNVYPS DW+PAITIKQILLGIQ+LL
Sbjct: 64 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 123
Query: 109 NEPNIKDPAQAEAYTIY 125
NEPNI+ PAQAEAYTIY
Sbjct: 124 NEPNIQAPAQAEAYTIY 140
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 226 bits (576), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 106/137 (77%), Positives = 118/137 (86%), Gaps = 12/137 (8%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
MSGIA+ RL++ERK WRKDHPFGFVA P KNPDG++NLMNWEC+IPGKKGTPWE G +KL
Sbjct: 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
RM+FKDDYPS+PPKCKFEPPLFHPNV PS DW+PAITIKQILLGIQ+LL
Sbjct: 64 RMLFKDDYPSSPPKCKFEPPLFHPNVAPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 123
Query: 109 NEPNIKDPAQAEAYTIY 125
NEPNI+DPAQAEAYTIY
Sbjct: 124 NEPNIQDPAQAEAYTIY 140
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 176 bits (446), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 85/136 (62%), Positives = 98/136 (72%), Gaps = 12/136 (8%)
Query: 2 SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLR 61
S + RL EERK WR+DHPFGF AKP K+ DG L+LMNW+ IPGK T WE G YKL
Sbjct: 8 SSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLT 67
Query: 62 MIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLLN 109
M F ++YP+ PPKC+F PPLFHPNVYPS WKPAITIKQILLGIQDLL+
Sbjct: 68 MAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLD 127
Query: 110 EPNIKDPAQAEAYTIY 125
+PNI PAQ EAYT++
Sbjct: 128 DPNIASPAQTEAYTMF 143
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 148 bits (374), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 72/137 (52%), Positives = 90/137 (65%), Gaps = 12/137 (8%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
MS + + RL EERK WRKDHPFGF AKP K DGS++L WE IPGK+GT W G Y +
Sbjct: 3 MSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPI 62
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
+ + ++YPS PPK KF +HPNVYPS DW+PAIT+KQI+LG+QDLL
Sbjct: 63 TVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLL 122
Query: 109 NEPNIKDPAQAEAYTIY 125
+ PN PAQ A+ +
Sbjct: 123 DSPNPNSPAQEPAWRSF 139
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 148 bits (374), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 72/137 (52%), Positives = 90/137 (65%), Gaps = 12/137 (8%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
MS + + RL EERK WRKDHPFGF AKP K DGS++L WE IPGK+GT W G Y +
Sbjct: 1 MSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPI 60
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
+ + ++YPS PPK KF +HPNVYPS DW+PAIT+KQI+LG+QDLL
Sbjct: 61 TVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLL 120
Query: 109 NEPNIKDPAQAEAYTIY 125
+ PN PAQ A+ +
Sbjct: 121 DSPNPNSPAQEPAWRSF 137
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 92.0 bits (227), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 72/135 (53%), Gaps = 15/135 (11%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
MS A RL + K ++D P G P++N N+M W I G +GTP+E G++KL
Sbjct: 1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSEN-----NIMQWNAVIFGPEGTPFEDGTFKL 55
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPNVYP----------SDWKPAITIKQILLGIQDLLNE 110
+ F ++YP+ PP +F +FHPNVY + W P + IL IQ LL+E
Sbjct: 56 VIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDE 115
Query: 111 PNIKDPAQAEAYTIY 125
PN PA ++A +Y
Sbjct: 116 PNPNSPANSQAAQLY 130
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 67/135 (49%), Gaps = 15/135 (11%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
MS A RL + K ++D P G P N N+M W I G TPW+ G++KL
Sbjct: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----NIMLWNAVIFGPDDTPWDGGTFKL 55
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPNVYP----------SDWKPAITIKQILLGIQDLLNE 110
+ F +DYP+ PP +F +FHPN+Y + W P + IL IQ LL +
Sbjct: 56 SLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCD 115
Query: 111 PNIKDPAQAEAYTIY 125
PN PA +EA +Y
Sbjct: 116 PNPNSPANSEAARMY 130
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 69/135 (51%), Gaps = 15/135 (11%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
MS A RL + K ++D P G A P PD N+M W I G TP+E G+++L
Sbjct: 1 MSTPARRRLMRDFKRMKEDAPPGVSASPL--PD---NVMVWNAMIIGPADTPYEDGTFRL 55
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPNVYP----------SDWKPAITIKQILLGIQDLLNE 110
+ F ++YP+ PP KF +FHPNVY + W P + IL IQ L N+
Sbjct: 56 LLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFND 115
Query: 111 PNIKDPAQAEAYTIY 125
PN PA EA T++
Sbjct: 116 PNPASPANVEAATLF 130
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 67/128 (52%), Gaps = 15/128 (11%)
Query: 8 RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
RL + K ++D P G P ++ N++ WE I G + TP+E G++KL + F ++
Sbjct: 8 RLMRDFKKLQEDPPAGVSGAPTED-----NILTWEAIIFGPQETPFEDGTFKLSLEFTEE 62
Query: 68 YPSTPPKCKFEPPLFHPNVYP----------SDWKPAITIKQILLGIQDLLNEPNIKDPA 117
YP+ PP KF +FHPNVY + W P + IL IQ LL+EPN PA
Sbjct: 63 YPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPA 122
Query: 118 QAEAYTIY 125
+ A +Y
Sbjct: 123 NSLAAQLY 130
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 83.6 bits (205), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 67/128 (52%), Gaps = 15/128 (11%)
Query: 8 RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
RL + K ++D P G P ++ N++ WE I G + TP+E G++KL + F ++
Sbjct: 11 RLMRDFKKLQEDPPAGVSGAPTED-----NILTWEAIIFGPQETPFEDGTFKLSLEFTEE 65
Query: 68 YPSTPPKCKFEPPLFHPNVYP----------SDWKPAITIKQILLGIQDLLNEPNIKDPA 117
YP+ PP KF +FHPNVY + W P + IL IQ LL+EPN PA
Sbjct: 66 YPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPA 125
Query: 118 QAEAYTIY 125
+ A +Y
Sbjct: 126 NSLAAQLY 133
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 70/148 (47%), Gaps = 27/148 (18%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
MS A RL +E + KD P G VA P N+ W+C I G TP+ G +
Sbjct: 1 MSKTAQKRLLKELQQLIKDSPPGIVA----GPKSENNIFIWDCLIQGPPDTPYADGVFNA 56
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPNVYPS-----------------------DWKPAITI 97
++ F DYP +PPK F P + HPN+YP+ W P ++
Sbjct: 57 KLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSV 116
Query: 98 KQILLGIQDLLNEPNIKDPAQAEAYTIY 125
++ILL + +L+EPNI+ A +A ++
Sbjct: 117 EKILLSVMSMLSEPNIESGANIDACILW 144
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 75.5 bits (184), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 15/135 (11%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
M+ +A+ R+++E +D P A P + ++ +W+ +I G +P++ G + L
Sbjct: 8 MNSMALKRINKELSDLARDPPAQCSAGPVGD-----DMFHWQATIMGPNDSPYQGGVFFL 62
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNE 110
+ F DYP PPK F ++HPN + S W PA+TI ++LL I LL +
Sbjct: 63 TIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCD 122
Query: 111 PNIKDPAQAEAYTIY 125
PN DP E IY
Sbjct: 123 PNPDDPLVPEIARIY 137
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 75.5 bits (184), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 15/135 (11%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
M +A+ R+ +E + ++D P A P + +L +W+ +I G +P++ G + L
Sbjct: 3 MGSMALKRIQKELQDLQRDPPAQCSAGPVGD-----DLFHWQATIMGPSDSPYQGGVFFL 57
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNE 110
+ F DYP PPK F ++HPN + S W PA+T+ ++LL I LL +
Sbjct: 58 TIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCD 117
Query: 111 PNIKDPAQAEAYTIY 125
PN DP + IY
Sbjct: 118 PNPDDPLVPDIAHIY 132
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 75.1 bits (183), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 15/135 (11%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
M+ +A+ R+ +E +D P A P + ++ +W+ +I G +P++ G + L
Sbjct: 8 MNSMALKRIHKELNDLARDPPAQCSAGPVGD-----DMFHWQATIMGPNDSPYQGGVFFL 62
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNE 110
+ F DYP PPK F ++HPN + S W PA+TI ++LL I LL +
Sbjct: 63 TIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCD 122
Query: 111 PNIKDPAQAEAYTIY 125
PN DP E IY
Sbjct: 123 PNPDDPLVPEIARIY 137
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 66/135 (48%), Gaps = 15/135 (11%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
M +A+ R+ +E +D P A P + ++ +W+ +I G +P++ G + L
Sbjct: 3 MGSMALKRIHKELNDLARDPPAQCSAGPVGD-----DMFHWQATIMGPNDSPYQGGVFFL 57
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNE 110
+ F DYP PPK F ++HPN + S W PA+TI ++LL I LL +
Sbjct: 58 TIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCD 117
Query: 111 PNIKDPAQAEAYTIY 125
PN DP E IY
Sbjct: 118 PNPDDPLVPEIARIY 132
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 53/100 (53%), Gaps = 11/100 (11%)
Query: 37 NLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPN----------- 85
N W I G +GTP+E G + L + +DYP PPK KF ++HPN
Sbjct: 51 NFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLD 110
Query: 86 VYPSDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125
V ++W PA+TI+ LL IQ LL++P DP AE +Y
Sbjct: 111 VLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMY 150
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 66/133 (49%), Gaps = 15/133 (11%)
Query: 3 GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRM 62
G A+ R+++E +D P A P + ++ +W+ +I G +P++ G + L +
Sbjct: 2 GSALKRINKELSDLARDPPAQCSAGPVGD-----DMFHWQATIMGPNDSPYQGGVFFLTI 56
Query: 63 IFKDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEPN 112
F DYP PPK F ++HPN + S W PA+TI ++LL I LL +PN
Sbjct: 57 HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPN 116
Query: 113 IKDPAQAEAYTIY 125
DP E IY
Sbjct: 117 PDDPLVPEIARIY 129
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 15/134 (11%)
Query: 2 SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLR 61
S +A+ R+ +E + +D P A P + +L +W+ +I G +P++ G + L
Sbjct: 2 SHMALKRIQKELQDLGRDPPAQCSAGPVGD-----DLFHWQATIMGPPESPYQGGVFFLT 56
Query: 62 MIFKDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEP 111
+ F DYP PPK F ++HPN + S W PA+TI ++LL I LL +P
Sbjct: 57 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDP 116
Query: 112 NIKDPAQAEAYTIY 125
N DP E IY
Sbjct: 117 NPDDPLVPEIARIY 130
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 15/131 (11%)
Query: 5 AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIF 64
A+ R+++E KD P A P + ++ +W+ +I G + +P+ G + L + F
Sbjct: 22 ALKRINKELNDLSKDPPTNCSAGPVGD-----DMFHWQATIMGPEDSPYSGGVFFLNIHF 76
Query: 65 KDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEPNIK 114
DYP PPK F ++HPN + W PA+TI ++LL I LL +PN
Sbjct: 77 PSDYPFKPPKVNFTTKIYHPNINSQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPD 136
Query: 115 DPAQAEAYTIY 125
DP E +Y
Sbjct: 137 DPLVPEIAHLY 147
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 15/132 (11%)
Query: 4 IAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMI 63
+A+ R++ E KD P A P + +L +W+ +I G +P+ G + L +
Sbjct: 1 MALKRINRELADLGKDPPSSSSAGPVGD-----DLFHWQATIMGPADSPYAGGVFFLSIH 55
Query: 64 FKDDYPSTPPKCKFEPPLFHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNI 113
F DYP PPK F ++HPN+ + W PA+TI ++LL I LL +PN
Sbjct: 56 FPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSISSLLTDPNP 115
Query: 114 KDPAQAEAYTIY 125
DP E +Y
Sbjct: 116 DDPLVPEIAHVY 127
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 15/132 (11%)
Query: 4 IAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMI 63
+A+ R+++E +D P A P + ++ +W+ +I G +P++ G + L +
Sbjct: 9 MALKRINKELSDLARDPPAQCSAGPVGD-----DMFHWQATIMGPNDSPYQGGVFFLTIH 63
Query: 64 FKDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEPNI 113
F DYP PPK F ++HPN + S W PA+TI ++LL I LL +PN
Sbjct: 64 FPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNP 123
Query: 114 KDPAQAEAYTIY 125
DP E IY
Sbjct: 124 DDPLVPEIARIY 135
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 15/132 (11%)
Query: 4 IAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMI 63
+A+ R+++E +D P A P + ++ +W+ +I G +P++ G + L +
Sbjct: 1 MALKRINKELSDLARDPPAQCSAGPVGD-----DMFHWQATIMGPNDSPYQGGVFFLTIH 55
Query: 64 FKDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEPNI 113
F DYP PPK F ++HPN + S W PA+TI ++LL I LL +PN
Sbjct: 56 FPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNP 115
Query: 114 KDPAQAEAYTIY 125
DP E IY
Sbjct: 116 DDPLVPEIARIY 127
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 15/133 (11%)
Query: 3 GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRM 62
+A+ R+ +E +D P A P + ++ +W+ +I G +P++ G + L +
Sbjct: 2 AMALKRIHKELNDLARDPPAQCSAGPVGD-----DMFHWQATIMGPNDSPYQGGVFFLTI 56
Query: 63 IFKDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEPN 112
F DYP PPK F ++HPN + S W PA+TI ++LL I LL +PN
Sbjct: 57 HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPN 116
Query: 113 IKDPAQAEAYTIY 125
DP E IY
Sbjct: 117 PDDPLVPEIARIY 129
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 15/133 (11%)
Query: 3 GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRM 62
+A+ R+ +E +D P A P + ++ +W+ +I G +P++ G + L +
Sbjct: 18 SMALKRIHKELNDLARDPPAQCSAGPVGD-----DMFHWQATIMGPNDSPYQGGVFFLTI 72
Query: 63 IFKDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEPN 112
F DYP PPK F ++HPN + S W PA+TI ++LL I LL +PN
Sbjct: 73 HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPN 132
Query: 113 IKDPAQAEAYTIY 125
DP E IY
Sbjct: 133 PDDPLVPEIARIY 145
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 15/133 (11%)
Query: 3 GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRM 62
+A+ R+ +E +D P A P + ++ +W+ +I G +P++ G + L +
Sbjct: 2 AMALKRIHKELNDLARDPPAQCSAGPVGD-----DMFHWQATIMGPNDSPYQGGVFFLTI 56
Query: 63 IFKDDYPSTPPKCKFEPPLFHPNV----------YPSDWKPAITIKQILLGIQDLLNEPN 112
F DYP PPK F ++HPN+ S W PA+TI ++LL I LL +PN
Sbjct: 57 HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDALRSQWSPALTISKVLLSICSLLCDPN 116
Query: 113 IKDPAQAEAYTIY 125
DP E IY
Sbjct: 117 PDDPLVPEIARIY 129
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 15/133 (11%)
Query: 3 GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRM 62
+A+ R+ +E +D P A P + ++ +W+ +I G +P++ G + L +
Sbjct: 3 SMALKRIHKELNDLARDPPAQCSAGPVGD-----DMFHWQATIMGPNDSPYQGGVFFLTI 57
Query: 63 IFKDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEPN 112
F DYP PPK F ++HPN + S W PA+TI ++LL I LL +PN
Sbjct: 58 HFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPN 117
Query: 113 IKDPAQAEAYTIY 125
DP E IY
Sbjct: 118 PDDPLVPEIARIY 130
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 15/133 (11%)
Query: 3 GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRM 62
+A+ R+ +E +D P A P + ++ +W+ +I G +P++ G + L +
Sbjct: 18 SMALKRIHKELNDLARDPPAQCSAGPVGD-----DMFHWQATIMGPNDSPYQGGVFFLTI 72
Query: 63 IFKDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEPN 112
F DYP PPK F ++HPN + S W PA+TI ++LL I LL +PN
Sbjct: 73 HFPTDYPFKPPKVAFTTRIYHPNINSNGSIXLDILRSQWSPALTISKVLLSICSLLCDPN 132
Query: 113 IKDPAQAEAYTIY 125
DP E IY
Sbjct: 133 PDDPLVPEIARIY 145
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 15/133 (11%)
Query: 3 GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRM 62
+A+ R+ +E +D P A P + ++ +W+ +I G +P++ G + L +
Sbjct: 2 SMALKRIHKELNDLARDPPAQCSAGPVGD-----DMFHWQATIMGPNDSPYQGGVFFLTI 56
Query: 63 IFKDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEPN 112
F DYP PPK F ++HPN + S W PA+TI ++LL I LL +PN
Sbjct: 57 HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPN 116
Query: 113 IKDPAQAEAYTIY 125
DP E IY
Sbjct: 117 PDDPLVPEIARIY 129
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 15/132 (11%)
Query: 4 IAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMI 63
+A+ R+ +E +D P A P + ++ +W+ +I G +P++ G + L +
Sbjct: 1 MALKRIHKELNDLARDPPAQCSAGPVGD-----DMFHWQATIMGPNDSPYQGGVFFLTIH 55
Query: 64 FKDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEPNI 113
F DYP PPK F ++HPN + S W PA+TI ++LL I LL +PN
Sbjct: 56 FPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNP 115
Query: 114 KDPAQAEAYTIY 125
DP E IY
Sbjct: 116 DDPLVPEIARIY 127
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 65/131 (49%), Gaps = 15/131 (11%)
Query: 5 AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIF 64
A+ R+++E +D P A P + ++ +W+ +I G +P++ G + L + F
Sbjct: 1 ALKRINKELSDLARDPPAQCSAGPVGD-----DMFHWQATIMGPNDSPYQGGVFFLTIHF 55
Query: 65 KDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEPNIK 114
DYP PPK F ++HPN + S W PA+TI ++LL I LL +PN
Sbjct: 56 PTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPD 115
Query: 115 DPAQAEAYTIY 125
DP E IY
Sbjct: 116 DPLVPEIARIY 126
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 15/133 (11%)
Query: 3 GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRM 62
+A+ R+ +E +D P A P + ++ +W+ +I G +P++ G + L +
Sbjct: 2 AMALKRIHKELNDLARDPPAQCSAGPVGD-----DMFHWQATIMGPNDSPYQGGVFFLTI 56
Query: 63 IFKDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEPN 112
F DYP PPK F ++HPN + S W PA+TI ++LL I LL +PN
Sbjct: 57 HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWGPALTISKVLLSICSLLCDPN 116
Query: 113 IKDPAQAEAYTIY 125
DP E IY
Sbjct: 117 PDDPLVPEIARIY 129
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 15/133 (11%)
Query: 3 GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRM 62
+A+ R+ +E +D P A+ + P G ++ +W+ +I G +P++ G + L +
Sbjct: 2 AMALKRIHKELNDLARDPP----AQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTI 56
Query: 63 IFKDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEPN 112
F DYP PPK F ++HPN + S W PA+TI ++LL I LL +PN
Sbjct: 57 HFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPN 116
Query: 113 IKDPAQAEAYTIY 125
DP E IY
Sbjct: 117 PDDPLVPEIARIY 129
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 52/100 (52%), Gaps = 11/100 (11%)
Query: 32 PDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPS-- 89
PDG NL W ++ G K T +ES YKL + F DYP PP KF P +HPNV S
Sbjct: 33 PDGD-NLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGN 91
Query: 90 --------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEA 121
+W + ++ ILL +Q LL EPN P A+A
Sbjct: 92 ICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQA 131
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 66/148 (44%), Gaps = 27/148 (18%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
M+G A+ RL E K + P G VA P N WE I G + T +E G +
Sbjct: 6 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEE----NFFEWEALIMGPEDTCFEFGVFPA 61
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPNVYPSD-----------------------WKPAITI 97
+ F DYP +PPK +F +FHPN+YP W P ++
Sbjct: 62 ILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSV 121
Query: 98 KQILLGIQDLLNEPNIKDPAQAEAYTIY 125
++ILL + +L EPN + A +A ++
Sbjct: 122 EKILLSVVSMLAEPNDESGANVDASKMW 149
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 15/133 (11%)
Query: 3 GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRM 62
+A+ R+ +E +D P A P + ++ +W+ + G +P++ G + L +
Sbjct: 2 AMALKRIHKELNDLARDPPAQCSAGPVGD-----DMFHWQATAMGPNDSPYQGGVFFLTI 56
Query: 63 IFKDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEPN 112
F DYP PPK F ++HPN + S W PA+TI ++LL I LL +PN
Sbjct: 57 HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPN 116
Query: 113 IKDPAQAEAYTIY 125
DP E IY
Sbjct: 117 PDDPLVPEIARIY 129
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 66/148 (44%), Gaps = 27/148 (18%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
M+G A+ RL E K + P G VA P N WE I G + T +E G +
Sbjct: 4 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEE----NFFEWEALIMGPEDTCFEFGVFPA 59
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPNVYPSD-----------------------WKPAITI 97
+ F DYP +PPK +F +FHPN+YP W P ++
Sbjct: 60 ILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSV 119
Query: 98 KQILLGIQDLLNEPNIKDPAQAEAYTIY 125
++ILL + +L EPN + A +A ++
Sbjct: 120 EKILLSVVSMLAEPNDESGANVDASKMW 147
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 66/148 (44%), Gaps = 27/148 (18%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
M+G A+ RL E K + P G VA P N WE I G + T +E G +
Sbjct: 3 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEE----NFFEWEALIMGPEDTCFEFGVFPA 58
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPNVYPSD-----------------------WKPAITI 97
+ F DYP +PPK +F +FHPN+YP W P ++
Sbjct: 59 ILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSV 118
Query: 98 KQILLGIQDLLNEPNIKDPAQAEAYTIY 125
++ILL + +L EPN + A +A ++
Sbjct: 119 EKILLSVVSMLAEPNDESGANVDASKMW 146
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 15/132 (11%)
Query: 4 IAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMI 63
+A+ R+ +E +D P A P + ++ +W+ +I G +P++ G + L +
Sbjct: 1 MALKRIHKELNDLARDPPAQCRAGPVGD-----DMFHWQATIMGPNDSPYQGGVFFLTIH 55
Query: 64 FKDDYPSTPPKCKFEPPLFHP----------NVYPSDWKPAITIKQILLGIQDLLNEPNI 113
F DYP PPK F ++HP ++ S W PA+TI ++LL I LL +PN
Sbjct: 56 FPTDYPFKPPKVAFTTRIYHPAINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNP 115
Query: 114 KDPAQAEAYTIY 125
DP E IY
Sbjct: 116 DDPLVPEIARIY 127
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 15/124 (12%)
Query: 8 RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
R+++E + + P G +A P N ++ I G GTP+E G+YKL + +
Sbjct: 5 RITKETQNLANEPPPGIMAVPVPE-----NYRHFNILINGPDGTPYEGGTYKLELFLPEQ 59
Query: 68 YPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEPNIKDPA 117
YP PPK +F ++HPN + W PA+ I+ +LL IQ LL+ P DP
Sbjct: 60 YPMEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPL 119
Query: 118 QAEA 121
++
Sbjct: 120 DSKV 123
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 15/135 (11%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
M +A+ R+ +E ++D P A P + +L +W+ +I G + ++ G + L
Sbjct: 4 MLEMALKRIQKELSDLQRDPPAHCSAGPVGD-----DLFHWQATIMGPPDSAYQGGVFFL 58
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNE 110
+ F DYP PPK F ++HPN + S W PA+T+ ++LL I LL +
Sbjct: 59 TVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCD 118
Query: 111 PNIKDPAQAEAYTIY 125
PN DP + IY
Sbjct: 119 PNPDDPLVPDIAQIY 133
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 15/124 (12%)
Query: 8 RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
R+++E + + P G +A P N ++ I G GTP+E G+YKL + +
Sbjct: 5 RITKETQNLANEPPPGIMAVPVPE-----NYRHFNILINGPDGTPYEGGTYKLELFLPEQ 59
Query: 68 YPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEPNIKDPA 117
YP PPK +F ++HPN + W PA+ I+ +LL IQ LL+ P DP
Sbjct: 60 YPMEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPL 119
Query: 118 QAEA 121
++
Sbjct: 120 DSKV 123
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 15/133 (11%)
Query: 3 GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRM 62
+A+ R+ +E ++D P A P + +L +W+ +I G + ++ G + L +
Sbjct: 2 AMALKRIQKELSDLQRDPPAHCSAGPVGD-----DLFHWQATIMGPPDSAYQGGVFFLTV 56
Query: 63 IFKDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEPN 112
F DYP PPK F ++HPN + S W PA+T+ ++LL I LL +PN
Sbjct: 57 HFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPN 116
Query: 113 IKDPAQAEAYTIY 125
DP + IY
Sbjct: 117 PDDPLVPDIAQIY 129
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 15/133 (11%)
Query: 3 GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRM 62
+A+ R+ +E ++D P A P + +L +W+ +I G + ++ G + L +
Sbjct: 18 SMALKRIQKELSDLQRDPPAHCSAGPVGD-----DLFHWQATIMGPPDSAYQGGVFFLTV 72
Query: 63 IFKDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEPN 112
F DYP PPK F ++HPN + S W PA+T+ ++LL I LL +PN
Sbjct: 73 HFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPN 132
Query: 113 IKDPAQAEAYTIY 125
DP + IY
Sbjct: 133 PDDPLVPDIAQIY 145
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 68.9 bits (167), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 15/133 (11%)
Query: 3 GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRM 62
+A+ R+ +E ++D P A P + +L +W+ +I G + ++ G + L +
Sbjct: 6 SMALKRIQKELSDLQRDPPAHCRAGPVGD-----DLFHWQATIMGPPDSAYQGGVFFLTV 60
Query: 63 IFKDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEPN 112
F DYP PPK F ++HPN + S W PA+T+ ++LL I LL +PN
Sbjct: 61 HFPTDYPFKPPKIAFTTKIYHPNINSNGSIKLDILRSQWSPALTVSKVLLSICSLLCDPN 120
Query: 113 IKDPAQAEAYTIY 125
DP + IY
Sbjct: 121 PDDPLVPDIAQIY 133
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 63/137 (45%), Gaps = 27/137 (19%)
Query: 12 ERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPST 71
E KG +++ GF D L NWE +I G T +E G +K R+ F DYP +
Sbjct: 15 ELKGLQEEPVEGFRVTLVDEGD----LYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYS 70
Query: 72 PPKCKFEPPLFHPNVY----------------------PSD-WKPAITIKQILLGIQDLL 108
PP +F ++HPN+Y PS+ W P ++ ILL + LL
Sbjct: 71 PPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLL 130
Query: 109 NEPNIKDPAQAEAYTIY 125
NEPN PA +A +Y
Sbjct: 131 NEPNTFSPANVDASVMY 147
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 68.6 bits (166), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 65/147 (44%), Gaps = 27/147 (18%)
Query: 2 SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLR 61
+G A+ RL E K + P G VA P N WE I G + T +E G +
Sbjct: 1 AGTALKRLMAEYKQLTLNPPEGIVAGPMNEE----NFFEWEALIMGPEDTCFEFGVFPAI 56
Query: 62 MIFKDDYPSTPPKCKFEPPLFHPNVYPSD-----------------------WKPAITIK 98
+ F DYP +PPK +F +FHPN+YP W P +++
Sbjct: 57 LSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVE 116
Query: 99 QILLGIQDLLNEPNIKDPAQAEAYTIY 125
+ILL + +L EPN + A +A ++
Sbjct: 117 KILLSVVSMLAEPNDESGANVDASKMW 143
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 63/137 (45%), Gaps = 27/137 (19%)
Query: 12 ERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPST 71
E KG +++ GF D L NWE +I G T +E G +K R+ F DYP +
Sbjct: 12 ELKGLQEEPVEGFRVTLVDEGD----LYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYS 67
Query: 72 PPKCKFEPPLFHPNVY----------------------PSD-WKPAITIKQILLGIQDLL 108
PP +F ++HPN+Y PS+ W P ++ ILL + LL
Sbjct: 68 PPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLL 127
Query: 109 NEPNIKDPAQAEAYTIY 125
NEPN PA +A +Y
Sbjct: 128 NEPNTFSPANVDASVMY 144
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 15/119 (12%)
Query: 8 RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
R+ +E + D G A+P + NL ++ +I G + +P+E G ++L + DD
Sbjct: 7 RIIKETEKLVSDPVPGITAEPHDD-----NLRYFQVTIEGPEQSPYEDGIFELELYLPDD 61
Query: 68 YPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEPNIKDP 116
YP PK +F ++HPN V ++W PA+ I+ +LL IQ LL PN DP
Sbjct: 62 YPMEAPKVRFLTKIYHPNIDRLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDP 120
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 15/119 (12%)
Query: 8 RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
R+ +E + D G A+P + NL ++ +I G + +P+E G ++L + DD
Sbjct: 9 RIIKETEKLVSDPVPGITAEPHDD-----NLRYFQVTIEGPEQSPYEDGIFELELYLPDD 63
Query: 68 YPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEPNIKDP 116
YP PK +F ++HPN V ++W PA+ I+ +LL IQ LL PN DP
Sbjct: 64 YPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDP 122
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 15/119 (12%)
Query: 8 RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
R+ +E + D G A+P + NL ++ +I G + +P+E G ++L + DD
Sbjct: 7 RIIKETEKLVSDPVPGITAEPHDD-----NLRYFQVTIEGPEQSPYEDGIFELELYLPDD 61
Query: 68 YPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEPNIKDP 116
YP PK +F ++HPN V ++W PA+ I+ +LL IQ LL PN DP
Sbjct: 62 YPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDP 120
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 15/128 (11%)
Query: 8 RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
R+++E +D P A P + +L +W+ SI G +P+ G + L + F D
Sbjct: 6 RIAKELSDLERDPPTSCSAGPVGD-----DLYHWQASIMGPADSPYAGGVFFLSIHFPTD 60
Query: 68 YPSTPPKCKFEPPLFHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPA 117
YP PPK F ++HPN+ + W PA+T+ ++LL I LL + N DP
Sbjct: 61 YPFKPPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPL 120
Query: 118 QAEAYTIY 125
E IY
Sbjct: 121 VPEIAHIY 128
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 15/131 (11%)
Query: 5 AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIF 64
A R+ +E +D P A P + ++ +W+ +I G +P++ G + L + F
Sbjct: 1 ASKRIHKELNDLARDPPAQCSAGPVGD-----DMFHWQATIMGPNDSPYQGGVFFLTIHF 55
Query: 65 KDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEPNIK 114
DYP PPK F ++HPN + S W PA+ I ++LL I LL +PN
Sbjct: 56 PTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALKISKVLLSICSLLCDPNPD 115
Query: 115 DPAQAEAYTIY 125
DP E IY
Sbjct: 116 DPLVPEIARIY 126
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 11/96 (11%)
Query: 37 NLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPN----------- 85
++ W I G GTP+E G + L ++ DYP PPK KF ++HPN
Sbjct: 73 DIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLD 132
Query: 86 VYPSDWKPAITIKQILLGIQDLLNEPNIKDPAQAEA 121
+ +W PA+TI+ LL IQ +L +P DP AE
Sbjct: 133 ILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEV 168
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 61/119 (51%), Gaps = 15/119 (12%)
Query: 8 RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
R+ +E + D G A+P + NL ++ +I G + +P+E G ++L + DD
Sbjct: 7 RIIKETEKLVSDPVPGITAEPHDD-----NLRYFQVTIEGPEQSPYEDGIFELELYLPDD 61
Query: 68 YPSTPPKCKFEPPLFHP----------NVYPSDWKPAITIKQILLGIQDLLNEPNIKDP 116
YP PK +F ++HP +V ++W PA+ I+ +LL IQ LL PN DP
Sbjct: 62 YPMEAPKVRFLTKIYHPAIDRLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDP 120
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 15/133 (11%)
Query: 2 SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLR 61
+ +A+ R+ +E + ++D P A P + ++ +W +I G +P++ G + L
Sbjct: 2 AAMAMRRIQKELREIQQDPPCNCSAGPVGD-----DIFHWTATITGPDDSPYQGGLFFLD 56
Query: 62 MIFKDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEP 111
+ F DYP P+ F ++HPN + W PA+T+ ++LL I LL +P
Sbjct: 57 VHFPVDYPFKAPRVTFMTKVYHPNINKNGVICLDILKDQWSPALTLSRVLLSISSLLTDP 116
Query: 112 NIKDPAQAEAYTI 124
N DP E +
Sbjct: 117 NPSDPLDPEVANV 129
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 65.1 bits (157), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 44/99 (44%), Gaps = 10/99 (10%)
Query: 37 NLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNV---------- 86
NL W +I G GT +E YKL + F YP P KF P +HPNV
Sbjct: 58 NLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDI 117
Query: 87 YPSDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125
W ++ ILL IQ LL EPNI P A ++
Sbjct: 118 LKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW 156
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 11/95 (11%)
Query: 32 PDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNV----- 86
PD S N + I G + +P+E G++KL + ++YP PK +F ++HPNV
Sbjct: 29 PDES-NARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGR 87
Query: 87 -----YPSDWKPAITIKQILLGIQDLLNEPNIKDP 116
W PA+ I+ +LL IQ LL+ PN DP
Sbjct: 88 ICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 122
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 11/95 (11%)
Query: 32 PDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNV----- 86
PD S N + I G + +P+E G++KL + ++YP PK +F ++HPNV
Sbjct: 30 PDES-NARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGR 88
Query: 87 -----YPSDWKPAITIKQILLGIQDLLNEPNIKDP 116
W PA+ I+ +LL IQ LL+ PN DP
Sbjct: 89 ICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 123
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 11/95 (11%)
Query: 32 PDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNV----- 86
PD S N + I G + +P+E G++KL + ++YP PK +F ++HPNV
Sbjct: 27 PDES-NARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGR 85
Query: 87 -----YPSDWKPAITIKQILLGIQDLLNEPNIKDP 116
W PA+ I+ +LL IQ LL+ PN DP
Sbjct: 86 ICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 120
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 11/95 (11%)
Query: 32 PDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNV----- 86
PD S N + I G + +P+E G++KL + ++YP PK +F ++HPNV
Sbjct: 25 PDES-NARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGR 83
Query: 87 -----YPSDWKPAITIKQILLGIQDLLNEPNIKDP 116
W PA+ I+ +LL IQ LL+ PN DP
Sbjct: 84 ICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 118
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 11/95 (11%)
Query: 32 PDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNV----- 86
PD S N + I G + +P+E G++KL + ++YP PK +F ++HPNV
Sbjct: 32 PDES-NARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGR 90
Query: 87 -----YPSDWKPAITIKQILLGIQDLLNEPNIKDP 116
W PA+ I+ +LL IQ LL+ PN DP
Sbjct: 91 ICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 125
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 63/137 (45%), Gaps = 18/137 (13%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
M G A L + ++++ G AKP S ++M WE I G + + W+ ++L
Sbjct: 20 MHGRAYLLLHRDFCDLKENNYKGITAKPV-----SEDMMEWEVEIEGLQNSVWQGLVFQL 74
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPNVYPSDWKPAI-------------TIKQILLGIQDL 107
+ F +Y PP KF FHPNV P +P I T+ ILL +Q +
Sbjct: 75 TIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVM 134
Query: 108 LNEPNIKDPAQAEAYTI 124
L+ P +++P EA I
Sbjct: 135 LSNPVLENPVNLEAARI 151
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 62.0 bits (149), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 10/95 (10%)
Query: 37 NLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHP----------NV 86
+L + + +I G +GTP+ G ++++++ D+P++PPK F +FHP NV
Sbjct: 41 DLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNV 100
Query: 87 YPSDWKPAITIKQILLGIQDLLNEPNIKDPAQAEA 121
DW + I+ +LL I+ LL PN + EA
Sbjct: 101 LKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEA 135
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 14/95 (14%)
Query: 40 NWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSD--------- 90
+ I G TP+E G +KL +I + YP PP+ +F P++HPN+ +
Sbjct: 35 DLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKL 94
Query: 91 -----WKPAITIKQILLGIQDLLNEPNIKDPAQAE 120
W+P++ I +L IQ L++EPN DP A+
Sbjct: 95 PPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMAD 129
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 37 NLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPN----------V 86
N+ W +I G G+ +E G + L + F DYP PPK F ++H N +
Sbjct: 31 NIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDI 90
Query: 87 YPSDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125
+W PA+TI ++LL I LL + N DP T Y
Sbjct: 91 LKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQY 129
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 58.9 bits (141), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 37 NLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPN----------V 86
N+ W +I G G+ +E G + L + F +YP PPK F ++H N +
Sbjct: 76 NIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDI 135
Query: 87 YPSDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125
+W PA+TI ++LL I LL + N DP T Y
Sbjct: 136 LKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQY 174
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 11/98 (11%)
Query: 37 NLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNV---------- 86
+L+N++ I +G ++SG + YP PPK K E ++HPN+
Sbjct: 33 DLLNFKLVICPDEGF-YKSGKFVFSFKVGQGYPHDPPKVKCETXVYHPNIDLEGNVCLNI 91
Query: 87 YPSDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTI 124
DWKP +TI I+ G+Q L EPN +DP EA +
Sbjct: 92 LREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEV 129
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 11/98 (11%)
Query: 37 NLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNV---------- 86
+L+N++ I +G ++SG + YP PPK K E ++HPN+
Sbjct: 53 DLLNFKLVICPDEGF-YKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNI 111
Query: 87 YPSDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTI 124
DWKP +TI I+ G+Q L EPN +DP EA +
Sbjct: 112 LREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEV 149
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 37 NLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPN----------- 85
++ + + + G GTP+E G + + + +YP PPK +F+ ++HPN
Sbjct: 30 DIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLD 89
Query: 86 VYPSDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125
+ + W P IT+K L+ +Q LL P DP AE Y
Sbjct: 90 ILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHY 129
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 37 NLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYP-------- 88
++ + + + G GTP+E G + + + +YP PPK +F+ ++HPN+
Sbjct: 31 DIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLD 90
Query: 89 ---SDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125
+ W P IT+K L+ +Q LL P DP AE Y
Sbjct: 91 ILRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHY 130
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 23/108 (21%)
Query: 37 NLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNV---------- 86
++ WE + G T +E G +K + F DYP PPK KF ++HPN+
Sbjct: 32 DIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISI 91
Query: 87 --YPSD-----------WKPAITIKQILLGIQDLLNEPNIKDPAQAEA 121
P D W P T++ ILL + +L +PN + PA +A
Sbjct: 92 LHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDA 139
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 23/108 (21%)
Query: 37 NLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSD------ 90
+L WE I G T +E G +K + F DYP PPK KF ++HPNV +
Sbjct: 46 DLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISI 105
Query: 91 -----------------WKPAITIKQILLGIQDLLNEPNIKDPAQAEA 121
W P T++ I++ + +L +PN PA +A
Sbjct: 106 LHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDA 153
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 16/131 (12%)
Query: 8 RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
RL +E + +K + V+ ++ D + L NW C+I G+ GT +E+ Y L + D+
Sbjct: 29 RLLDELERGQKGNVSEGVSFGLESAD-DITLSNWSCTIFGQPGTVFENRIYSLTIFCDDN 87
Query: 68 YPSTPPKCKFEPPLFHPNV------------YPSDWKPAITIKQILLGI-QDLLNEPNIK 114
YP +PP KF+ + V +W TI+ IL+ + Q++L+ N +
Sbjct: 88 YPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKNWNRNYTIETILISLRQEMLSSANKR 147
Query: 115 --DPAQAEAYT 123
P + E Y+
Sbjct: 148 LPQPNEGEVYS 158
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 16/131 (12%)
Query: 8 RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
RL +E + +K + V+ ++ D + L NW C+I G+ GT +E+ Y L + D+
Sbjct: 25 RLLDELERGQKGNVSEGVSFGLESAD-DITLSNWSCTIFGQPGTVFENRIYSLTIFCDDN 83
Query: 68 YPSTPPKCKFEPPLFHPNV------------YPSDWKPAITIKQILLGI-QDLLNEPNIK 114
YP +PP KF+ + V +W TI+ IL+ + Q++L+ N +
Sbjct: 84 YPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKNWNRNYTIETILISLRQEMLSSANKR 143
Query: 115 --DPAQAEAYT 123
P + E Y+
Sbjct: 144 LPQPNEGEVYS 154
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 12/100 (12%)
Query: 37 NLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPN----------- 85
NL+ W+ I P++ G++++ + F +YP PPK F+ ++HPN
Sbjct: 33 NLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPV 91
Query: 86 VYPSDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125
+ +WKPA Q++ + L+N+P + P +A+ Y
Sbjct: 92 ISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEY 131
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 12/100 (12%)
Query: 37 NLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPN----------- 85
NL+ W+ I P++ G++++ + F +YP PPK F+ ++HPN
Sbjct: 31 NLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPV 89
Query: 86 VYPSDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125
+ +WKPA Q++ + L+N+P + P +A+ Y
Sbjct: 90 ISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEY 129
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 11/80 (13%)
Query: 52 PWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNV-----------YPSDWKPAITIKQI 100
P+ ++ LR+ F +YP PP KF ++HPNV +WKP Q+
Sbjct: 47 PYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQV 106
Query: 101 LLGIQDLLNEPNIKDPAQAE 120
L + L+N PNI++P + +
Sbjct: 107 LEALNVLVNRPNIREPLRMD 126
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 11/80 (13%)
Query: 52 PWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNV-----------YPSDWKPAITIKQI 100
P+ ++ LR+ F +YP PP KF ++HPNV +WKP Q+
Sbjct: 44 PYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQV 103
Query: 101 LLGIQDLLNEPNIKDPAQAE 120
L + L+N PNI++P + +
Sbjct: 104 LEALNVLVNRPNIREPLRMD 123
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
Query: 53 WESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNV----------YPSDWKPAITIKQILL 102
+ GS + F + YP PPK +FHPN+ DW PA+ ++ I+
Sbjct: 77 YNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIIT 136
Query: 103 GIQDLLNEPNIKDPAQAEA 121
G+ L EPN DP +A
Sbjct: 137 GLLFLFLEPNPNDPLNKDA 155
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 16/117 (13%)
Query: 5 AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIF 64
A RL ++ +KD A+P + N++ W + G + TP+E G Y ++IF
Sbjct: 15 ATQRLKQDYLRIKKDPVPYICAEPLPS-----NILEWHYVVRGPEMTPYEGGYYHGKLIF 69
Query: 65 KDDYPSTPP-----------KCKFEPPLFHPNVYPSDWKPAITIKQILLGIQDLLNE 110
++P PP KC L + +P W PA ++ IL G+ + E
Sbjct: 70 PREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVE 126
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 12/97 (12%)
Query: 40 NWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSD--------- 90
+++ G GT +E G +K+ + DDYP P F L HPNV +
Sbjct: 30 DFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVIN 89
Query: 91 --WKPAITIKQIL-LGIQDLLNEPNIKDPAQAEAYTI 124
W P ++ + + + LL PN DP ++A ++
Sbjct: 90 QTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASL 126
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 13/111 (11%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
M+ IA+ R+ E K K D + + E I G TP+E G Y+L
Sbjct: 2 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGE--IAGPPDTPYEGGRYQL 59
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPN-----------VYPSDWKPAITIKQI 100
+ + YP PPK +F ++HPN + W A+T++ +
Sbjct: 60 EIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTV 110
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 13/111 (11%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
M+ IA+ R+ E K K D + + E I G TP+E G Y+L
Sbjct: 3 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGE--IAGPPDTPYEGGRYQL 60
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPN-----------VYPSDWKPAITIKQI 100
+ + YP PPK +F ++HPN + W A+T++ +
Sbjct: 61 EIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTV 111
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 14/104 (13%)
Query: 34 GSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSDWKP 93
G LN + G +GTP+E G +K+R+ D YP P F +FHPN+ +
Sbjct: 48 GGLN--EFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTV 105
Query: 94 AI-TIKQILLGIQDLLN-----------EPNIKDPAQAEAYTIY 125
+ I Q + DL N PN DP +A +Y
Sbjct: 106 CLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMY 149
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 13/111 (11%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
M+ IA+ R+ E K K D + + E I G TP+E G Y+L
Sbjct: 5 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGE--IAGPPDTPYEGGRYQL 62
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPN-----------VYPSDWKPAITIKQI 100
+ + YP PPK +F ++HPN + W A+T++ +
Sbjct: 63 EIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTV 113
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 13/111 (11%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
M+ IA+ R+ E K K D + + E I G TP+E G Y+L
Sbjct: 18 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGE--IAGPPDTPYEGGRYQL 75
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPN-----------VYPSDWKPAITIKQI 100
+ + YP PPK +F ++HPN + W A+T++ +
Sbjct: 76 EIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTV 126
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 13/111 (11%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
M+ IA+ R+ E K K D + + E I G TP+E G Y+L
Sbjct: 54 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGE--IAGPPDTPYEGGRYQL 111
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPN-----------VYPSDWKPAITIKQI 100
+ + YP PPK +F ++HPN + W A+T++ +
Sbjct: 112 EIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTV 162
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 16/117 (13%)
Query: 3 GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRM 62
G A R+ +E + + P N N+ W G + T + + YKL++
Sbjct: 5 GNANYRIQKELHNFLNNPPINCTLDVHPN-----NIRIWIVKYVGLENTIYANEVYKLKI 59
Query: 63 IFKDDYPSTPPKCKF-EPPLFHPNVYPS----------DWKPAITIKQILLGIQDLL 108
IF DDYP PP F + P H +VY + D+ P+++I ++L I +L
Sbjct: 60 IFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISML 116
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 13/107 (12%)
Query: 31 NPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKF-EPPLFHPNV--- 86
NP +L WE I G TP+E+ +++ + YP PPK F + + H NV
Sbjct: 40 NPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSA 99
Query: 87 ---------YPSDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTI 124
P +W P + + + LL EP P + I
Sbjct: 100 TGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGAI 146
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 19/116 (16%)
Query: 8 RLSEERKGWRKDHPFGFVA--KPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFK 65
RL +E + D P G K +N ++ W + G GT +E ++L F
Sbjct: 26 RLQKELLALQNDPPPGMTLNEKSVQN-----SITQWIVDMEGAPGTLYEGEKFQLLFKFS 80
Query: 66 DDYPSTPPKCKF--EPPLFHPNVYPS----------DWKPAITIKQILLGIQDLLN 109
YP P+ F E HP+VY + DW PA++++ + L I +L+
Sbjct: 81 SRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS 136
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 13/107 (12%)
Query: 31 NPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKF-EPPLFHPNV--- 86
NP +L WE I G TP+E+ +++ + YP PPK F + + H NV
Sbjct: 40 NPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSA 99
Query: 87 ---------YPSDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTI 124
P +W P + + + LL EP P + I
Sbjct: 100 TGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNI 146
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 13/107 (12%)
Query: 31 NPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKF-EPPLFHPNV--- 86
NP +L WE I G TP+E+ +++ + YP PPK F + + H NV
Sbjct: 40 NPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSA 99
Query: 87 ---------YPSDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTI 124
P +W P + + + LL EP P + I
Sbjct: 100 TGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVSDSPLDVDIGNI 146
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 12/87 (13%)
Query: 47 GKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPN-----------VYPSDWKPAI 95
G +GTP+E G++ L + DYP P F + HPN V W P
Sbjct: 46 GPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQTWTPMY 105
Query: 96 TIKQIL-LGIQDLLNEPNIKDPAQAEA 121
++ I + + LL PN DP +A
Sbjct: 106 QLENIFDVFLPQLLRYPNPSDPLNVQA 132
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Query: 37 NLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKF-EPPLFHPNVYPS------ 89
N+ W G + T + + YK+++IF D+YP PP F + P H +VY +
Sbjct: 48 NIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYSNGDICLS 107
Query: 90 ----DWKPAITIKQILLGIQDLL 108
D+ P+++I ++L I +L
Sbjct: 108 VLGDDYNPSLSISGLILSIISML 130
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 15/102 (14%)
Query: 36 LNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPS------ 89
+ + W +I G + E+ Y L + +YP +PPK F + P V P+
Sbjct: 37 ITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQT 96
Query: 90 ------DWKPAITIKQILLGIQDLLNEP---NIKDPAQAEAY 122
DWK A T++ +LL ++ + P ++ P + E +
Sbjct: 97 DFHTLRDWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF 138
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 15/102 (14%)
Query: 36 LNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPS------ 89
+ + W +I G + E+ Y L + +YP +PPK F + P V P+
Sbjct: 36 ITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQT 95
Query: 90 ------DWKPAITIKQILLGIQDLLNEP---NIKDPAQAEAY 122
DWK A T++ +LL ++ + P ++ P + E +
Sbjct: 96 DFHTLRDWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF 137
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 57 SYKLRMIFKDDYPSTPPKCKFEPPLFHPNV 86
+Y+L ++F DDYP PP +F P++ P V
Sbjct: 70 TYQLSVLFSDDYPHEPPTVRFVTPVYSPLV 99
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 25/97 (25%)
Query: 45 IPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPP-----LFHPNVY------------ 87
I G TP+ +G ++ + F DYPS+PP E F+PN+Y
Sbjct: 116 ITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNT 175
Query: 88 -----PSDWKPAI-TIKQILLGIQDLL--NEPNIKDP 116
W P + Q+L+ +Q L+ EP +P
Sbjct: 176 WHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEP 212
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 33.1 bits (74), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 17/86 (19%)
Query: 53 WESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYP----------------SDWKPAIT 96
++ G ++ D Y PPK K ++HPN+ + W P T
Sbjct: 58 YQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRT 117
Query: 97 IKQILLGIQDLLNE-PNIKDPAQAEA 121
+K ++ G+ L + N DP EA
Sbjct: 118 LKDVVWGLNSLFTDLLNFDDPLNIEA 143
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 17/86 (19%)
Query: 53 WESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYP----------------SDWKPAIT 96
++ G ++ D Y PPK K ++HPN+ + W P T
Sbjct: 58 YQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRT 117
Query: 97 IKQILLGIQDLLNE-PNIKDPAQAEA 121
+K ++ G+ L + N DP EA
Sbjct: 118 LKDVVWGLNSLFTDLLNFDDPLNIEA 143
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 15/130 (11%)
Query: 8 RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
RL EE + +K G V+ ++ D + L W I G T +E+ Y L++
Sbjct: 19 RLLEELEEGQKGVGDGTVSWGLED-DEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPK 77
Query: 68 YPSTPPKCKFEPPLFHPNVYPSD-------------WKPAITIKQILLGIQDL-LNEPNI 113
YP PP +F + + S W+ + +IK +L ++ L +++ N+
Sbjct: 78 YPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENM 137
Query: 114 KDPAQAEAYT 123
K P E T
Sbjct: 138 KLPQPPEGQT 147
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 15/130 (11%)
Query: 8 RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
RL EE + +K G V+ ++ D + L W I G T +E+ Y L++
Sbjct: 9 RLLEELEEGQKGVGDGTVSWGLED-DEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPK 67
Query: 68 YPSTPPKCKFEPPLFHPNVYPSD-------------WKPAITIKQILLGIQDL-LNEPNI 113
YP PP +F + + S W+ + +IK +L ++ L +++ N+
Sbjct: 68 YPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENM 127
Query: 114 KDPAQAEAYT 123
K P E T
Sbjct: 128 KLPQPPEGQT 137
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 15/130 (11%)
Query: 8 RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
RL EE + +K G V+ ++ D + L W I G T +E+ Y L++
Sbjct: 8 RLLEELEEGQKGVGDGTVSWGLED-DEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPK 66
Query: 68 YPSTPPKCKFEPPLFHPNVYPSD-------------WKPAITIKQILLGIQDL-LNEPNI 113
YP PP +F + + S W+ + +IK +L ++ L +++ N+
Sbjct: 67 YPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENM 126
Query: 114 KDPAQAEAYT 123
K P E T
Sbjct: 127 KLPQPPEGQT 136
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 15/130 (11%)
Query: 8 RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
RL EE + +K G V+ ++ D + L W I G T +E+ Y L++
Sbjct: 14 RLLEELEEGQKGVGDGTVSWGLED-DEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPK 72
Query: 68 YPSTPPKCKFEPPLFHPNVYPSD-------------WKPAITIKQILLGIQDL-LNEPNI 113
YP PP +F + + S W+ + +IK +L ++ L +++ N+
Sbjct: 73 YPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENM 132
Query: 114 KDPAQAEAYT 123
K P E T
Sbjct: 133 KLPQPPEGQT 142
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 17/132 (12%)
Query: 8 RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
RL EE + +K G V+ ++ D + L W I G T +E+ Y L++
Sbjct: 11 RLLEELEEGQKGVGDGTVSWGLED-DEDMTLTRWTGMILGPPRTIYENRIYSLKIECGPK 69
Query: 68 YPSTPPKCKFEPPLFHPNVYPSD-------------WKPAITIKQILLGIQDL-LNEPNI 113
YP PP +F + V S+ W+ + +IK +L ++ L +++ N+
Sbjct: 70 YPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENM 129
Query: 114 K--DPAQAEAYT 123
K P + + Y+
Sbjct: 130 KLPQPPEGQCYS 141
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 17/132 (12%)
Query: 8 RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
RL EE + +K G V+ ++ D + L W I G T +E+ Y L++
Sbjct: 29 RLLEELEEGQKGVGDGTVSWGLED-DEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPK 87
Query: 68 YPSTPPKCKFEPPLFHPNVYPSD-------------WKPAITIKQILLGIQDL-LNEPNI 113
YP PP +F + V S+ W+ + +IK +L ++ L +++ N+
Sbjct: 88 YPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENM 147
Query: 114 K--DPAQAEAYT 123
K P + + Y+
Sbjct: 148 KLPQPPEGQCYS 159
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 17/132 (12%)
Query: 8 RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
RL EE + +K G V+ ++ D + L W I G T +E+ Y L++
Sbjct: 39 RLLEELEEGQKGVGDGTVSWGLED-DEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPK 97
Query: 68 YPSTPPKCKFEPPLFHPNVYPSD-------------WKPAITIKQILLGIQDL-LNEPNI 113
YP PP +F + V S+ W+ + +IK +L ++ L +++ N+
Sbjct: 98 YPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENM 157
Query: 114 K--DPAQAEAYT 123
K P + + Y+
Sbjct: 158 KLPQPPEGQCYS 169
>pdb|3OBQ|A Chain A, Crystal Structure Of The Tsg101 Uev Domain In Complex
With A Human Hrs Psap Peptide
pdb|3OBS|A Chain A, Crystal Structure Of Tsg101 Uev Domain
pdb|3OBU|A Chain A, Crystal Structure Of The Tsg101 Uev Domain In Complex
With A Hiv-1 Ptap Peptide
pdb|3OBX|A Chain A, Crystal Structure Of The Tsg101 Uev Domain In Complex
With A Hiv-1 Gag P7a Mutant Peptide
Length = 146
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 34 GSLNLMNWECSIPGKKGTPWESGSYKLRMIF--KDDYPSTPPKCKFEP 79
GS LMN +IP P+ +Y + + D YP PP C +P
Sbjct: 49 GSRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPICFVKP 92
>pdb|3P9G|A Chain A, Crystal Structure Of The Tsg101 Uev Domain In Complex
With Fa459 Peptide
pdb|3P9H|A Chain A, Crystal Structure Of The Tsg101 Uev Domain In Complex
With Fa258 Peptide
Length = 145
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 34 GSLNLMNWECSIPGKKGTPWESGSYKLRMIF--KDDYPSTPPKCKFEP 79
GS LMN +IP P+ +Y + + D YP PP C +P
Sbjct: 48 GSRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPICFVKP 91
>pdb|3K2W|A Chain A, Crystal Structure Of Betaine-Aldehyde Dehydrogenase From
Pseudoalteromonas Atlantica T6c
pdb|3K2W|B Chain B, Crystal Structure Of Betaine-Aldehyde Dehydrogenase From
Pseudoalteromonas Atlantica T6c
pdb|3K2W|C Chain C, Crystal Structure Of Betaine-Aldehyde Dehydrogenase From
Pseudoalteromonas Atlantica T6c
pdb|3K2W|D Chain D, Crystal Structure Of Betaine-Aldehyde Dehydrogenase From
Pseudoalteromonas Atlantica T6c
pdb|3K2W|E Chain E, Crystal Structure Of Betaine-Aldehyde Dehydrogenase From
Pseudoalteromonas Atlantica T6c
pdb|3K2W|F Chain F, Crystal Structure Of Betaine-Aldehyde Dehydrogenase From
Pseudoalteromonas Atlantica T6c
pdb|3K2W|G Chain G, Crystal Structure Of Betaine-Aldehyde Dehydrogenase From
Pseudoalteromonas Atlantica T6c
pdb|3K2W|H Chain H, Crystal Structure Of Betaine-Aldehyde Dehydrogenase From
Pseudoalteromonas Atlantica T6c
Length = 497
Score = 26.2 bits (56), Expect = 5.6, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 22 FGFVAKPAKNPDGSLNLMNWECSIPGK 48
G +AK A PDG LN++N S+ G+
Sbjct: 194 LGRIAKEAGLPDGVLNVINGTGSVVGQ 220
>pdb|2F0R|A Chain A, Crystallographic Structure Of Human Tsg101 Uev Domain
pdb|2F0R|B Chain B, Crystallographic Structure Of Human Tsg101 Uev Domain
Length = 159
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 31 NPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIF--KDDYPSTPPKCKFEP 79
N S LMN +IP P+ +Y + + D YP PP C +P
Sbjct: 59 NDGSSRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPICFVKP 105
>pdb|3CDU|A Chain A, Crystal Structure Of Coxsackievirus B3 Rna-dependent Rna
Polymerase (3dpol) In Complex With A Pyrophosphate
pdb|3CDW|A Chain A, Crystal Structure Of Coxsackievirus B3 Rna-Dependent Rna
Polymerase (3dpol) In Complex With Protein Primer Vpg
And A Pyrophosphate
Length = 468
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 70 STPPKCKFEPPLFHPNVYPSDWKPAI 95
+TP K K EP +FH V+ + +PA+
Sbjct: 18 NTPSKTKLEPSVFH-QVFEGNKEPAV 42
>pdb|3DDK|A Chain A, Coxsackievirus B3 3dpol Rna Dependent Rna Polymerase
Length = 462
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 70 STPPKCKFEPPLFHPNVYPSDWKPAI 95
+TP K K EP +FH V+ + +PA+
Sbjct: 18 NTPSKTKLEPSVFH-QVFEGNKEPAV 42
>pdb|1KPP|A Chain A, Structure Of The Tsg101 Uev Domain
pdb|1KPQ|A Chain A, Structure Of The Tsg101 Uev Domain
pdb|1M4P|A Chain A, Structure Of The Tsg101 Uev Domain In Complex With A
Hiv-1 Ptap "late Domain" Peptide, Dyana Ensemble
pdb|1M4Q|A Chain A, Structure Of The Tsg101 Uev Domain In Complex With A
Hiv-1 Ptap "late Domain" Peptide, Cns Ensemble
Length = 145
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 31 NPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIF--KDDYPSTPPKCKFEP 79
N S LMN +IP P+ +Y + + D YP PP C +P
Sbjct: 45 NDGSSRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPICFVKP 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.138 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,540,147
Number of Sequences: 62578
Number of extensions: 198588
Number of successful extensions: 563
Number of sequences better than 100.0: 131
Number of HSP's better than 100.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 349
Number of HSP's gapped (non-prelim): 131
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)