Query psy90
Match_columns 125
No_of_seqs 146 out of 1095
Neff 8.2
Searched_HMMs 46136
Date Sat Aug 17 01:07:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy90.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/90hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5078 Ubiquitin-protein liga 100.0 1.8E-46 3.8E-51 256.8 14.4 119 3-125 4-132 (153)
2 KOG0419|consensus 100.0 1.2E-46 2.5E-51 247.5 12.4 120 1-125 1-130 (152)
3 KOG0417|consensus 100.0 2.2E-46 4.8E-51 251.8 11.3 116 5-125 2-127 (148)
4 PTZ00390 ubiquitin-conjugating 100.0 1.3E-42 2.9E-47 239.3 14.0 116 5-125 3-128 (152)
5 PLN00172 ubiquitin conjugating 100.0 1.4E-42 3E-47 238.2 13.5 116 5-125 2-127 (147)
6 KOG0425|consensus 100.0 1.6E-40 3.6E-45 224.1 12.0 119 3-125 4-145 (171)
7 KOG0424|consensus 100.0 2.3E-39 5.1E-44 215.7 12.7 125 1-125 1-137 (158)
8 KOG0421|consensus 100.0 1.4E-38 3.1E-43 212.2 11.2 118 3-125 28-155 (175)
9 KOG0418|consensus 100.0 1.8E-38 4E-43 219.9 11.9 119 1-125 1-133 (200)
10 KOG0426|consensus 100.0 2.8E-38 6E-43 208.2 10.8 121 1-125 1-144 (165)
11 PF00179 UQ_con: Ubiquitin-con 100.0 5.5E-38 1.2E-42 213.6 11.9 114 8-125 1-125 (140)
12 cd00195 UBCc Ubiquitin-conjuga 100.0 1.5E-37 3.3E-42 211.7 13.6 114 7-125 2-126 (141)
13 smart00212 UBCc Ubiquitin-conj 100.0 1.4E-35 3E-40 202.9 12.6 115 7-125 1-126 (145)
14 KOG0422|consensus 100.0 3.2E-33 6.9E-38 185.5 9.8 116 5-125 3-129 (153)
15 KOG0416|consensus 100.0 6E-32 1.3E-36 184.8 9.1 113 5-125 4-128 (189)
16 KOG0420|consensus 100.0 2.5E-31 5.5E-36 182.0 10.8 118 3-124 27-154 (184)
17 KOG0423|consensus 100.0 1.7E-30 3.7E-35 178.3 5.8 117 3-124 9-135 (223)
18 KOG0894|consensus 100.0 7.2E-29 1.6E-33 175.4 11.3 102 2-112 3-119 (244)
19 KOG0427|consensus 100.0 7.4E-28 1.6E-32 158.6 10.7 112 1-118 12-135 (161)
20 KOG0428|consensus 99.9 1.7E-21 3.6E-26 140.6 8.4 98 3-110 10-122 (314)
21 KOG0429|consensus 99.8 1.8E-19 3.9E-24 128.2 10.5 112 8-125 23-150 (258)
22 KOG0896|consensus 99.6 9.3E-15 2E-19 97.0 7.3 104 6-110 7-123 (138)
23 KOG0895|consensus 99.5 2.4E-14 5.2E-19 120.1 7.6 101 5-110 852-971 (1101)
24 KOG0895|consensus 99.5 2.3E-13 4.9E-18 114.3 9.8 104 3-111 281-405 (1101)
25 KOG0897|consensus 97.8 5.2E-05 1.1E-09 49.4 4.6 59 58-120 13-89 (122)
26 PF05743 UEV: UEV domain; Int 97.6 0.0003 6.4E-09 46.8 6.3 70 37-110 31-117 (121)
27 PF14461 Prok-E2_B: Prokaryoti 97.4 0.00042 9.1E-09 46.6 5.4 57 54-110 34-106 (133)
28 PF05773 RWD: RWD domain; Int 96.7 0.0077 1.7E-07 38.4 6.2 70 6-81 3-74 (113)
29 smart00591 RWD domain in RING 96.3 0.036 7.7E-07 35.0 7.2 26 55-80 40-65 (107)
30 KOG2391|consensus 96.2 0.064 1.4E-06 41.4 9.1 72 37-112 51-139 (365)
31 PF14462 Prok-E2_E: Prokaryoti 94.7 0.57 1.2E-05 31.2 8.6 72 37-109 22-120 (122)
32 PF08694 UFC1: Ubiquitin-fold 94.2 0.027 5.9E-07 38.4 1.5 64 4-77 24-96 (161)
33 PF14457 Prok-E2_A: Prokaryoti 92.9 0.2 4.4E-06 34.9 4.1 51 60-110 57-126 (162)
34 PF09765 WD-3: WD-repeat regio 92.7 0.26 5.6E-06 37.5 4.8 86 5-109 100-187 (291)
35 KOG3357|consensus 90.6 0.58 1.3E-05 31.5 4.2 63 4-77 27-99 (167)
36 KOG4018|consensus 88.0 2.4 5.3E-05 30.8 6.1 62 7-76 5-69 (215)
37 KOG0309|consensus 87.6 3 6.6E-05 35.9 7.2 67 7-80 423-491 (1081)
38 PF06113 BRE: Brain and reprod 83.0 5.2 0.00011 31.1 6.2 55 52-106 61-122 (333)
39 PF06113 BRE: Brain and reprod 72.7 8.6 0.00019 29.9 4.7 25 55-79 305-329 (333)
40 smart00340 HALZ homeobox assoc 67.5 5 0.00011 21.6 1.8 16 5-20 20-35 (44)
41 cd00421 intradiol_dioxygenase 56.5 18 0.00038 24.5 3.4 24 55-78 65-89 (146)
42 cd03457 intradiol_dioxygenase_ 52.4 21 0.00046 25.4 3.4 24 55-78 86-109 (188)
43 KOG3285|consensus 52.0 29 0.00062 24.8 3.9 42 4-50 119-160 (203)
44 PF09943 DUF2175: Uncharacteri 51.4 16 0.00036 23.5 2.4 20 39-60 1-20 (101)
45 cd03459 3,4-PCD Protocatechuat 45.8 32 0.0007 23.7 3.4 24 55-78 72-100 (158)
46 KOG4445|consensus 45.1 30 0.00065 26.8 3.3 26 56-81 45-70 (368)
47 PF09606 Med15: ARC105 or Med1 42.2 8.4 0.00018 33.5 0.0 25 56-80 714-738 (799)
48 PF03366 YEATS: YEATS family; 41.5 83 0.0018 19.3 4.8 40 39-80 2-41 (84)
49 PF13950 Epimerase_Csub: UDP-g 40.7 34 0.00074 19.7 2.4 18 90-107 37-54 (62)
50 PF04881 Adeno_GP19K: Adenovir 40.1 28 0.0006 23.5 2.2 28 37-64 46-74 (139)
51 PF02970 TBCA: Tubulin binding 36.1 42 0.0009 20.9 2.5 17 3-19 6-22 (90)
52 PF14135 DUF4302: Domain of un 35.1 1.4E+02 0.0029 21.8 5.4 49 3-67 8-56 (235)
53 PF00845 Gemini_BL1: Geminivir 33.4 99 0.0021 23.3 4.4 45 37-82 101-154 (276)
54 TIGR02423 protocat_alph protoc 33.3 61 0.0013 23.2 3.3 24 55-78 96-124 (193)
55 PF14824 Sirohm_synth_M: Siroh 33.3 63 0.0014 16.0 2.3 16 1-16 14-29 (30)
56 PHA03200 uracil DNA glycosylas 31.2 67 0.0015 24.1 3.3 34 39-75 83-117 (255)
57 cd03463 3,4-PCD_alpha Protocat 30.3 76 0.0016 22.5 3.3 23 56-78 93-120 (185)
58 PF12065 DUF3545: Protein of u 29.8 42 0.00092 19.4 1.6 12 6-17 36-47 (59)
59 COG1343 CRISPR-associated prot 26.7 1.7E+02 0.0036 18.3 4.6 45 1-51 39-83 (89)
60 KOG1814|consensus 26.0 2.5E+02 0.0053 22.9 5.7 19 59-77 77-96 (445)
61 KOG3696|consensus 25.9 1.2E+02 0.0025 23.7 3.7 37 53-89 284-326 (334)
62 COG3866 PelB Pectate lyase [Ca 25.8 1.3E+02 0.0028 23.5 4.0 41 40-80 198-241 (345)
63 cd05845 Ig2_L1-CAM_like Second 24.1 1.1E+02 0.0024 19.1 2.9 26 53-80 16-41 (95)
64 COG4847 Uncharacterized protei 23.9 84 0.0018 20.1 2.3 22 37-60 3-24 (103)
65 KOG1047|consensus 23.8 87 0.0019 26.4 2.9 29 51-80 248-279 (613)
66 PF04314 DUF461: Protein of un 22.3 1.3E+02 0.0027 19.2 3.0 27 40-66 77-103 (110)
67 PF12627 PolyA_pol_RNAbd: Prob 22.3 80 0.0017 17.6 1.9 19 3-21 21-39 (64)
68 PF06305 DUF1049: Protein of u 21.0 1E+02 0.0022 17.4 2.2 16 4-19 48-63 (68)
69 TIGR02439 catechol_proteo cate 20.7 1.4E+02 0.0029 22.9 3.3 24 55-78 180-221 (285)
70 TIGR01462 greA transcription e 20.4 1.1E+02 0.0024 20.7 2.6 18 1-18 2-19 (151)
No 1
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-46 Score=256.85 Aligned_cols=119 Identities=45% Similarity=0.821 Sum_probs=114.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCcc
Q psy90 3 GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLF 82 (125)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~ 82 (125)
+.+.+||++|++++++++++++++.+.++. |+++|+++|.||++||||||+|++.|.||++||++||+|+|.|+||
T Consensus 4 ~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~----~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~ 79 (153)
T COG5078 4 PSALKRLLKELKKLQKDPPPGISAGPVDDD----NLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIF 79 (153)
T ss_pred hhHHHHHHHHHHHHhcCCCCceEEEECCCC----cceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCc
Confidence 349999999999999999999999999764 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 83 HPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 83 HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
||||+.+ +|+|+++|++||.+|+++|.+||.+||+|.|||++|
T Consensus 80 HPNV~~~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~ 132 (153)
T COG5078 80 HPNVDPSGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLY 132 (153)
T ss_pred CCCcCCCCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHH
Confidence 9999965 899999999999999999999999999999999875
No 2
>KOG0419|consensus
Probab=100.00 E-value=1.2e-46 Score=247.49 Aligned_cols=120 Identities=42% Similarity=0.814 Sum_probs=118.3
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCC
Q psy90 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPP 80 (125)
Q Consensus 1 ms~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~ 80 (125)
||..|.+||++|+++++++++.|+++.|.++ |++.|.+.|+||.+|||+||+|++.|+|+++||.+||.|+|+++
T Consensus 1 MstpArrrLmrDfkrlqedpp~gisa~P~~~-----niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~ 75 (152)
T KOG0419|consen 1 MSTPARRRLMRDFKRLQEDPPAGISAAPVEN-----NIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSK 75 (152)
T ss_pred CCchHHHHHHHHHHHhhcCCCCCccCCCCcc-----ceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeee
Confidence 8999999999999999999999999999998 99999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 81 LFHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 81 i~HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
+||||||.+ .|+|.|++.+||.+||+||.+|++++|+|.|||+||
T Consensus 76 mFHPNvya~G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf 130 (152)
T KOG0419|consen 76 MFHPNVYADGSICLDILQNRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLF 130 (152)
T ss_pred ccCCCcCCCCcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHH
Confidence 999999998 899999999999999999999999999999999987
No 3
>KOG0417|consensus
Probab=100.00 E-value=2.2e-46 Score=251.79 Aligned_cols=116 Identities=38% Similarity=0.781 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCccCC
Q psy90 5 AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHP 84 (125)
Q Consensus 5 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HP 84 (125)
+.+||.||++++++++++|+++.+.++ |+++|+++|.||.+||||||+|++.|.||++||++||+|+|.|+||||
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~~d-----nl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHP 76 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPVGD-----NLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHP 76 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCCCC-----ceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccC
Confidence 467999999999999999999998777 999999999999999999999999999999999999999999999999
Q ss_pred CCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 85 NVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 85 ni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
||+.. .|+|++||.+||++|+++|.+||++||++.++|.+|
T Consensus 77 NI~~~G~IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~ 127 (148)
T KOG0417|consen 77 NIDSNGRICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELY 127 (148)
T ss_pred CcCccccchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHH
Confidence 99966 899999999999999999999999999999999876
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=1.3e-42 Score=239.31 Aligned_cols=116 Identities=34% Similarity=0.701 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCccCC
Q psy90 5 AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHP 84 (125)
Q Consensus 5 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HP 84 (125)
+.|||++|+++++++++.|+.+.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~-----d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HP 77 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDPG-----NYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHP 77 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECCC-----CccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeec
Confidence 589999999999999999999998876 999999999999999999999999999999999999999999999999
Q ss_pred CCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 85 NVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 85 ni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
||+.+ +|+|++|+++||++|+++|.+|++++|+|.+||++|
T Consensus 78 NV~~~G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~ 128 (152)
T PTZ00390 78 NIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHF 128 (152)
T ss_pred eECCCCeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHH
Confidence 99976 799999999999999999999999999999999986
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=1.4e-42 Score=238.17 Aligned_cols=116 Identities=37% Similarity=0.770 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCccCC
Q psy90 5 AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHP 84 (125)
Q Consensus 5 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HP 84 (125)
+.+||++|++++++++++++++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||
T Consensus 2 a~~Rl~kE~~~l~~~~~~~~~~~~~~~-----nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 76 (147)
T PLN00172 2 ATKRIQKEHKDLLKDPPSNCSAGPSDE-----NLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHP 76 (147)
T ss_pred hHHHHHHHHHHHHhCCCCCeEEEECCC-----ChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccc
Confidence 479999999999999999999998876 999999999999999999999999999999999999999999999999
Q ss_pred CCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 85 NVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 85 ni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
||+.+ +|+|++|+++||.+|+++|.+|+++||+|.+||++|
T Consensus 77 Nv~~~G~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~ 127 (147)
T PLN00172 77 NINSNGSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVF 127 (147)
T ss_pred eECCCCEEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHH
Confidence 99977 799999999999999999999999999999999876
No 6
>KOG0425|consensus
Probab=100.00 E-value=1.6e-40 Score=224.11 Aligned_cols=119 Identities=34% Similarity=0.627 Sum_probs=113.3
Q ss_pred hHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCcc
Q psy90 3 GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLF 82 (125)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~ 82 (125)
+.+..-|+++|++|++++..|+++...++. |+++|.|.|+||++|.|+||.|+..+.||.+||++||+++|.|+||
T Consensus 4 ~~a~~ll~~qlk~L~~~pv~gf~~glvd~~----dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mw 79 (171)
T KOG0425|consen 4 SQASLLLLKQLKELQEEPVEGFSVGLVDDS----DIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMW 79 (171)
T ss_pred chhHHHHHHHHHHHhcCCCCccccccccCC----ceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhc
Confidence 456778999999999999999999887764 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC-----------------------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 83 HPNVYPS-----------------------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 83 HPni~~~-----------------------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
|||||.+ .|+|..|+++||++|.+||.+||.++|+|.|||+.|
T Consensus 80 HPNvy~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~ 145 (171)
T KOG0425|consen 80 HPNVYEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEW 145 (171)
T ss_pred CCCcCCCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHH
Confidence 9999998 799999999999999999999999999999999865
No 7
>KOG0424|consensus
Probab=100.00 E-value=2.3e-39 Score=215.73 Aligned_cols=125 Identities=82% Similarity=1.473 Sum_probs=121.6
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCC
Q psy90 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPP 80 (125)
Q Consensus 1 ms~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~ 80 (125)
||..+..||+.|-+.+.++.+.|+++.|..+.|+..|++.|++.|-|+.||+||||.|.+++.||++||.+||+++|.++
T Consensus 1 ~s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p 80 (158)
T KOG0424|consen 1 MSGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP 80 (158)
T ss_pred CcchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC
Confidence 88999999999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCC------------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 81 LFHPNVYPS------------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 81 i~HPni~~~------------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
.||||||.+ +|+|+.||.+||.+|++||.+||..||+|.||...|
T Consensus 81 l~HPNVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~ 137 (158)
T KOG0424|consen 81 LFHPNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIY 137 (158)
T ss_pred CcCCCcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHH
Confidence 999999998 699999999999999999999999999999998765
No 8
>KOG0421|consensus
Probab=100.00 E-value=1.4e-38 Score=212.17 Aligned_cols=118 Identities=39% Similarity=0.661 Sum_probs=114.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCcc
Q psy90 3 GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLF 82 (125)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~ 82 (125)
....|||++|+..|+....+||++.|.++ |++.|..+|.||.+|+|+|-.|++.+.||.+||++||.|+|+|+.|
T Consensus 28 ~~V~KRLq~ELm~Lmms~~~gISAFP~~d-----nlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~ 102 (175)
T KOG0421|consen 28 HSVTKRLQSELMGLMMSNTPGISAFPESD-----NLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCF 102 (175)
T ss_pred chHHHHHHHHHHHHHhcCCCCcccCcCcC-----ceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeecccc
Confidence 35789999999999999999999999988 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 83 HPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 83 HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
||||+.. .|+..|.+++||++||++|-+||.++|||..||+++
T Consensus 103 HPNVD~~GnIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW 155 (175)
T KOG0421|consen 103 HPNVDLSGNICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELW 155 (175)
T ss_pred CCCccccccchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHh
Confidence 9999998 899999999999999999999999999999999874
No 9
>KOG0418|consensus
Probab=100.00 E-value=1.8e-38 Score=219.86 Aligned_cols=119 Identities=34% Similarity=0.640 Sum_probs=114.7
Q ss_pred CChHHHHHHHHHHHHHHhCC---CCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEe
Q psy90 1 MSGIAIGRLSEERKGWRKDH---PFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKF 77 (125)
Q Consensus 1 ms~~~~~Rl~~E~~~l~~~~---~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f 77 (125)
||. +.+||++|++++.+++ ..|+.+....+ |+.+..+.|.||+|||||||+|.++|++|++|||+||+|+|
T Consensus 1 m~~-~~~ri~~e~k~v~~~~eisq~~I~ve~vn~-----~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F 74 (200)
T KOG0418|consen 1 MSN-AFKRINREQKEVLDDPEISQAGIIVEMVNE-----NLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKF 74 (200)
T ss_pred Ccc-HHHHHHHHHHHhccChhhhhcceEEEEccC-----ChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceee
Confidence 788 9999999999999998 78999998887 99999999999999999999999999999999999999999
Q ss_pred cCCccCCCCCCC-----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 78 EPPLFHPNVYPS-----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 78 ~t~i~HPni~~~-----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
.|+||||||+.. .|++++||.++|.+||++|..|++.||.+.++|++|
T Consensus 75 ~TkIwHPnVSs~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy 133 (200)
T KOG0418|consen 75 ITKIWHPNVSSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQY 133 (200)
T ss_pred eeeeecCCCCcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHH
Confidence 999999999987 899999999999999999999999999999999886
No 10
>KOG0426|consensus
Probab=100.00 E-value=2.8e-38 Score=208.19 Aligned_cols=121 Identities=39% Similarity=0.778 Sum_probs=116.7
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCC
Q psy90 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPP 80 (125)
Q Consensus 1 ms~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~ 80 (125)
|+..|+|||++|+++|-.++++|+.+.|..+. |++.|.+.|.||++|+|+||+|-.++.||.+||.+||+++|...
T Consensus 1 m~~~AlkRLm~EykqLt~~~P~GIvAgP~~Ed----nfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~ 76 (165)
T KOG0426|consen 1 MAGTALKRLMAEYKQLTLNPPEGIVAGPINED----NFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCE 76 (165)
T ss_pred CchhHHHHHHHHHHHHccCCCCcceeCCCCcc----ceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecc
Confidence 78899999999999999999999999998763 99999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCC-----------------------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 81 LFHPNVYPS-----------------------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 81 i~HPni~~~-----------------------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
+|||||+.+ .|+|..+++.||+++.+||++||.++++|.+|+.++
T Consensus 77 ~fHPNiy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mW 144 (165)
T KOG0426|consen 77 MFHPNIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMW 144 (165)
T ss_pred cccCcccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHH
Confidence 999999998 899999999999999999999999999999999864
No 11
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=5.5e-38 Score=213.58 Aligned_cols=114 Identities=46% Similarity=0.888 Sum_probs=104.4
Q ss_pred HHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCccCCCCC
Q psy90 8 RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVY 87 (125)
Q Consensus 8 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPni~ 87 (125)
||++|+++++++++.|+.+.+.++. |+.+|+++|.||++|||+||.|+|.|.||++||++||+|+|.|+|+||||+
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~----~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~ 76 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDD----NLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNID 76 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTT----ETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCC----ChheEEEEEeccCccceeccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999988752 999999999999999999999999999999999999999999999999999
Q ss_pred CC-----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 88 PS-----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 88 ~~-----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
.+ .|+|++++.+||.+|+++|.+|+.++|+|.+||++|
T Consensus 77 ~~G~icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~ 125 (140)
T PF00179_consen 77 ENGRICLDILNPESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELY 125 (140)
T ss_dssp TTSBBGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHH
T ss_pred ccccchhhhhhcccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHH
Confidence 76 399999999999999999999999999999999875
No 12
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=1.5e-37 Score=211.70 Aligned_cols=114 Identities=46% Similarity=0.869 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCccCCCC
Q psy90 7 GRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNV 86 (125)
Q Consensus 7 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPni 86 (125)
|||++|+++++++++.|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.++++||||
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~-----~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV 76 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEE-----NLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNV 76 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCC-----ChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCC
Confidence 7999999999999999999999887 99999999999999999999999999999999999999999999999999
Q ss_pred CCC----------C-CCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 87 YPS----------D-WKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 87 ~~~----------~-W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
+.+ . |+|++++++||.+|+++|.+|+.++|+|.+||++|
T Consensus 77 ~~~G~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~ 126 (141)
T cd00195 77 DENGKICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLY 126 (141)
T ss_pred CCCCCCchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHH
Confidence 976 4 99999999999999999999999999999999876
No 13
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=1.4e-35 Score=202.91 Aligned_cols=115 Identities=47% Similarity=0.817 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCccCCCC
Q psy90 7 GRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNV 86 (125)
Q Consensus 7 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPni 86 (125)
+||++|+++++++++.|+++.+.++. |+++|+++|.||++|||+||.|.+.|.||++||.+||+|+|.++++||||
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~----~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i 76 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDED----NLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNV 76 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCC----ChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeE
Confidence 59999999999999999999887642 89999999999999999999999999999999999999999999999999
Q ss_pred CCC-----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 87 YPS-----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 87 ~~~-----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
+.+ +|+|+++++++|.+|+++|.+|+.++|+|.|||++|
T Consensus 77 ~~~G~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~ 126 (145)
T smart00212 77 DSSGEICLDILKQEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLY 126 (145)
T ss_pred CCCCCEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence 987 599999999999999999999999999999999876
No 14
>KOG0422|consensus
Probab=100.00 E-value=3.2e-33 Score=185.51 Aligned_cols=116 Identities=30% Similarity=0.589 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCccCC
Q psy90 5 AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHP 84 (125)
Q Consensus 5 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HP 84 (125)
+.+||+||+.+|+++....+.-...++. |+..|.+.|. |++-||..|.|+++|.||.+|||+||+|+|.|+||||
T Consensus 3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~----nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHp 77 (153)
T KOG0422|consen 3 APRRLRKELADLQKNKMKFFRNIEVDEA----NLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHP 77 (153)
T ss_pred hhHHHHHHHHHHHhccHHHHhhhhcccc----cceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccC
Confidence 6899999999999998775543333322 9999999999 8999999999999999999999999999999999999
Q ss_pred CCCCC-----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 85 NVYPS-----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 85 ni~~~-----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
||++. +|+|+.+.++||++|.+++.+|+++.|++.|+|..|
T Consensus 78 NVDe~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey 129 (153)
T KOG0422|consen 78 NVDEKGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEY 129 (153)
T ss_pred CCCCCCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHH
Confidence 99998 899999999999999999999999999999999876
No 15
>KOG0416|consensus
Probab=99.97 E-value=6e-32 Score=184.80 Aligned_cols=113 Identities=26% Similarity=0.499 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCccCC
Q psy90 5 AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHP 84 (125)
Q Consensus 5 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HP 84 (125)
..||+..|+..|..... .+....+ ++++++|.+.||.+|||+||+++++|.+|++||++.|+|.|+++||||
T Consensus 4 ~~rRid~Dv~KL~~s~y---eV~~ind-----~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHP 75 (189)
T KOG0416|consen 4 GKRRIDTDVMKLLMSDY---EVTIIND-----GMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHP 75 (189)
T ss_pred cccchhhHHHHHHhcCC---eEEEecC-----cccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCC
Confidence 67899999999986553 4444444 799999999999999999999999999999999999999999999999
Q ss_pred CCCCC-----------CCCCcCCHHHHH-HHHHHhhcCCCCCChhcHHHHhhC
Q psy90 85 NVYPS-----------DWKPAITIKQIL-LGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 85 ni~~~-----------~W~p~~tl~~vl-~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
||+.. .|+|.+.|..|+ .-|-+||..||+.||||.|||.+|
T Consensus 76 NIDe~SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~ 128 (189)
T KOG0416|consen 76 NIDEASGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALY 128 (189)
T ss_pred CchhccCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHH
Confidence 99987 899999999999 577889999999999999999876
No 16
>KOG0420|consensus
Probab=99.97 E-value=2.5e-31 Score=182.00 Aligned_cols=118 Identities=28% Similarity=0.544 Sum_probs=100.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCcc
Q psy90 3 GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLF 82 (125)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~ 82 (125)
+.++-||++|+.++. -++.++.......++. +..+++++|. |.++.|+||.|.|.+++|+.||++||+|+|+|+||
T Consensus 27 s~a~lrl~~di~eln--Lp~t~~~s~~~~~~d~-~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~ 102 (184)
T KOG0420|consen 27 SAALLRLKKDILELN--LPPTCSLSFPDSPDDL-NNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVY 102 (184)
T ss_pred cHHHHHHHhhhhhcc--CCCccccccccCCccc-ccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccc
Confidence 456678888877775 4445554333332222 3336999999 99999999999999999999999999999999999
Q ss_pred CCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhh
Q psy90 83 HPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTI 124 (125)
Q Consensus 83 HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~ 124 (125)
||||+.+ +|+|+.+|.+|+.+|+.+|.+|+++||||.|||++
T Consensus 103 HPNId~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~ 154 (184)
T KOG0420|consen 103 HPNIDLDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAV 154 (184)
T ss_pred cCCcCCcchHHHHHHHhcCccccchHHHHHHHHHHhccCCCcccccHHHHHH
Confidence 9999998 99999999999999999999999999999999985
No 17
>KOG0423|consensus
Probab=99.96 E-value=1.7e-30 Score=178.31 Aligned_cols=117 Identities=32% Similarity=0.619 Sum_probs=112.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCcc
Q psy90 3 GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLF 82 (125)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~ 82 (125)
....|.+.+|++.+...++.||.+.+.++ |.+...+.|.||.||||++|.|++++.+..+||.+||+-.|+|+||
T Consensus 9 p~vik~~~kEl~~l~~~PPdGIKV~~Nee-----D~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIF 83 (223)
T KOG0423|consen 9 PNVIKQLAKELKSLDESPPDGIKVVVNEE-----DFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIF 83 (223)
T ss_pred hHHHHHHHHHHHhcccCCCCceEEecChH-----HhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeec
Confidence 45788999999999999999999998887 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhh
Q psy90 83 HPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTI 124 (125)
Q Consensus 83 HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~ 124 (125)
||||..+ +|+|+.++..||..|.++|..|++++.+|.||.++
T Consensus 84 HPNVaaNGEICVNtLKkDW~p~LGirHvLltikCLLI~PnPESALNEeAGkm 135 (223)
T KOG0423|consen 84 HPNVAANGEICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKM 135 (223)
T ss_pred cCCcccCceehhhhhhcccCcccchhhHhhhhheeeecCChHHHHhHHHHHH
Confidence 9999998 89999999999999999999999999999999875
No 18
>KOG0894|consensus
Probab=99.96 E-value=7.2e-29 Score=175.41 Aligned_cols=102 Identities=33% Similarity=0.673 Sum_probs=95.2
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCC-
Q psy90 2 SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPP- 80 (125)
Q Consensus 2 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~- 80 (125)
+..|.|||+||++.|+++|.+++.+.|..+ |+.+||.+|.||++|||+||.|+.+|.||.+||++||.|+++|+
T Consensus 3 ~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~-----nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPN 77 (244)
T KOG0894|consen 3 SKAAVKRLQKEYRALCKDPVPYIVARPNPN-----NILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPN 77 (244)
T ss_pred chHHHHHHHHHHHHHHhCCchhhccCCCcc-----ceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCC
Confidence 368999999999999999999999999998 99999999999999999999999999999999999999999886
Q ss_pred --------------ccCCCCCCCCCCCcCCHHHHHHHHHHhhcCCC
Q psy90 81 --------------LFHPNVYPSDWKPAITIKQILLGIQDLLNEPN 112 (125)
Q Consensus 81 --------------i~HPni~~~~W~p~~tl~~vl~~i~~ll~~p~ 112 (125)
-||| +.|+|.++|.+||.+|.++|.+-.
T Consensus 78 GRFktntRLCLSiSDfHP----dsWNP~WsVStILtGLlSFM~e~~ 119 (244)
T KOG0894|consen 78 GRFKTNTRLCLSISDFHP----DSWNPGWSVSTILTGLLSFMTEDS 119 (244)
T ss_pred CceecCceEEEeccccCc----CcCCCcccHHHHHHHHHHHHhcCC
Confidence 2676 489999999999999999998643
No 19
>KOG0427|consensus
Probab=99.95 E-value=7.4e-28 Score=158.63 Aligned_cols=112 Identities=30% Similarity=0.718 Sum_probs=101.7
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCC
Q psy90 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPP 80 (125)
Q Consensus 1 ms~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~ 80 (125)
|+..+.+||+||+.+++.+++.|+..... + |+.+|.+.+.|.+||.|+|.+|.+.++||+.||+..|+|.|..+
T Consensus 12 ls~~at~RLqKEl~e~q~~pP~G~~~~v~-d-----nlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~ 85 (161)
T KOG0427|consen 12 LSKIATNRLQKELSEWQNNPPTGFKHRVT-D-----NLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGP 85 (161)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcceeecc-c-----chheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecC
Confidence 45678999999999999999999998733 3 99999999999999999999999999999999999999999999
Q ss_pred c-cCCCCCCC----------CCCCcCCHHHHHHHHHHhhcC-CCCCChhc
Q psy90 81 L-FHPNVYPS----------DWKPAITIKQILLGIQDLLNE-PNIKDPAQ 118 (125)
Q Consensus 81 i-~HPni~~~----------~W~p~~tl~~vl~~i~~ll~~-p~~~~p~n 118 (125)
+ .||+||.+ .|+|++++.+|.++|.+||++ .....|.+
T Consensus 86 ~P~HPHiYSNGHICL~iL~d~WsPAmsv~SvClSIlSMLSSs~eKqrP~D 135 (161)
T KOG0427|consen 86 APLHPHIYSNGHICLDILYDSWSPAMSVQSVCLSILSMLSSSKEKQRPTD 135 (161)
T ss_pred CCCCCceecCCeEEEEeecccCCcchhhHHHHHHHHHHHccCccccCCCc
Confidence 7 89999999 899999999999999999996 44444544
No 20
>KOG0428|consensus
Probab=99.86 E-value=1.7e-21 Score=140.65 Aligned_cols=98 Identities=31% Similarity=0.646 Sum_probs=89.9
Q ss_pred hHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCc-
Q psy90 3 GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL- 81 (125)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i- 81 (125)
+.+.|||+||.++++ ++...+.+.|.++ |+++|+++|.||.+|-|+||+|+.+|.||.+||++||.+..+|+-
T Consensus 10 npaVkRlmkEa~El~-~Ptd~yha~plEd-----NlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNG 83 (314)
T KOG0428|consen 10 NPAVKRLMKEAAELK-DPTDHYHAQPLED-----NLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNG 83 (314)
T ss_pred CHHHHHHHHHHHHhc-Cchhhhhhccchh-----ceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCC
Confidence 568999999999999 8888889999998 999999999999999999999999999999999999999888861
Q ss_pred --------------cCCCCCCCCCCCcCCHHHHHHHHHHhhcC
Q psy90 82 --------------FHPNVYPSDWKPAITIKQILLGIQDLLNE 110 (125)
Q Consensus 82 --------------~HPni~~~~W~p~~tl~~vl~~i~~ll~~ 110 (125)
||| ..|.|+|++.+.|++|..+|-.
T Consensus 84 RFE~nkKiCLSISgyHP----EtWqPSWSiRTALlAlIgFmPt 122 (314)
T KOG0428|consen 84 RFEVNKKICLSISGYHP----ETWQPSWSIRTALLALIGFMPT 122 (314)
T ss_pred ceeeCceEEEEecCCCc----cccCcchhHHHHHHHHHccccC
Confidence 566 3899999999999999998864
No 21
>KOG0429|consensus
Probab=99.81 E-value=1.8e-19 Score=128.23 Aligned_cols=112 Identities=23% Similarity=0.463 Sum_probs=102.2
Q ss_pred HHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCC--CCCeeEecCCccCCC
Q psy90 8 RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPS--TPPKCKFEPPLFHPN 85 (125)
Q Consensus 8 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~--~pP~v~f~t~i~HPn 85 (125)
-|+.|+..+.+++.+|+++.|+-. |-+.|.++|++ ..++|.||+|+|+|.+|++||. .-|+|.|.+.++||+
T Consensus 23 ~llAEf~lV~~ekL~gIyviPSya-----n~l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~ 96 (258)
T KOG0429|consen 23 ALLAEFVLVCREKLDGIYVIPSYA-----NKLLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPL 96 (258)
T ss_pred HHHHHHHHHHhccCCceEEccccc-----ccceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccc
Confidence 478889999999999999999988 99999999995 5678999999999999999995 479999999999999
Q ss_pred CCCC-----------CCCC-cCCHHHHHHHHHHhhcCCCCCCh-h-cHHHHhhC
Q psy90 86 VYPS-----------DWKP-AITIKQILLGIQDLLNEPNIKDP-A-QAEAYTIY 125 (125)
Q Consensus 86 i~~~-----------~W~p-~~tl~~vl~~i~~ll~~p~~~~p-~-n~~aa~~y 125 (125)
|+.. .|.. ..++.+||..||.+|.+|+.+.+ + |+|||.+|
T Consensus 97 icp~skeLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~ 150 (258)
T KOG0429|consen 97 ICPKSKELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLY 150 (258)
T ss_pred cCCCccceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHH
Confidence 9997 7976 67899999999999999998876 4 99999886
No 22
>KOG0896|consensus
Probab=99.57 E-value=9.3e-15 Score=96.97 Aligned_cols=104 Identities=26% Similarity=0.378 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCccCCC
Q psy90 6 IGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPN 85 (125)
Q Consensus 6 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPn 85 (125)
..||.+|+.+-++--.++..-.-.++.|+ .-+..|..+|.||+.|+||+.+|.++|..-++||..||.|+|.+++--+.
T Consensus 7 nfrlleele~g~kg~g~~~~s~gl~d~~d-mtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~g 85 (138)
T KOG0896|consen 7 NFRLLEELEEGEKGIGDGTVSWGLEDDDD-MTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNG 85 (138)
T ss_pred chhhhhhhccccccccCceeeccccCCCc-ceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecc
Confidence 35788888888776666665555554332 26789999999999999999999999999999999999999999986666
Q ss_pred CCCC-------------CCCCcCCHHHHHHHHHHhhcC
Q psy90 86 VYPS-------------DWKPAITIKQILLGIQDLLNE 110 (125)
Q Consensus 86 i~~~-------------~W~p~~tl~~vl~~i~~ll~~ 110 (125)
|... +|.-.|+++.+|..+.-++..
T Consensus 86 vn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~~ 123 (138)
T KOG0896|consen 86 VNSSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMMS 123 (138)
T ss_pred cccCCCccCccccchhhcccccchhhHHHHhhhHHHHH
Confidence 5554 899999999999999976654
No 23
>KOG0895|consensus
Probab=99.52 E-value=2.4e-14 Score=120.08 Aligned_cols=101 Identities=28% Similarity=0.537 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCC--cc
Q psy90 5 AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPP--LF 82 (125)
Q Consensus 5 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~--i~ 82 (125)
..+..+.|++.|..+.+.|+.+...++ .+....+.|.|+++|||++|.|.|.+.||++||..||.+...+. .+
T Consensus 852 ~~~~~~~~~~~~~~~~~~~~~vr~~e~-----r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~ 926 (1101)
T KOG0895|consen 852 WAKKVQTEWKILPLSLPSGIFVRAYED-----RMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRL 926 (1101)
T ss_pred HHHHHHHHHHhhhccCCCceEEEechH-----HHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceee
Confidence 445567788888888999999998887 77778899999999999999999999999999999999999875 58
Q ss_pred CCCCCCC-----------------CCCCcCCHHHHHHHHHHhhcC
Q psy90 83 HPNVYPS-----------------DWKPAITIKQILLGIQDLLNE 110 (125)
Q Consensus 83 HPni~~~-----------------~W~p~~tl~~vl~~i~~ll~~ 110 (125)
+||.|.+ .|+|+.++.+||.+||.|.-+
T Consensus 927 npnly~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~ 971 (1101)
T KOG0895|consen 927 NPNLYEDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLN 971 (1101)
T ss_pred CcccccccceehhhhccccCCCccccCcchhHHHHHHHhhhhhcc
Confidence 9999998 699999999999999998765
No 24
>KOG0895|consensus
Probab=99.48 E-value=2.3e-13 Score=114.31 Aligned_cols=104 Identities=29% Similarity=0.541 Sum_probs=96.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCC--
Q psy90 3 GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPP-- 80 (125)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~-- 80 (125)
....+|+++|++.+.++.++|+.+.+.+. .+....+.|.||.+|||++|.|.|.|.||..||..||.++++|.
T Consensus 281 ~~~skrv~ke~~llskdlpEgifvrp~e~-----RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~ 355 (1101)
T KOG0895|consen 281 KNWSKKVAKELKLLSKDLPEGIFVRPDEG-----RMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGG 355 (1101)
T ss_pred hhhHHHHHHHhhhhcccCCCCcccccccc-----ccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccc
Confidence 45689999999999999999999998887 99999999999999999999999999999999999999999987
Q ss_pred -ccCCCCCCC-----------------CCCCc-CCHHHHHHHHHHhhcCC
Q psy90 81 -LFHPNVYPS-----------------DWKPA-ITIKQILLGIQDLLNEP 111 (125)
Q Consensus 81 -i~HPni~~~-----------------~W~p~-~tl~~vl~~i~~ll~~p 111 (125)
.+.||.|.+ .|+|. .++.++|..||.+..+-
T Consensus 356 ~R~nPNlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 356 VRLNPNLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNE 405 (1101)
T ss_pred eeecCCcccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhccc
Confidence 589999888 69997 99999999999987753
No 25
>KOG0897|consensus
Probab=97.78 E-value=5.2e-05 Score=49.41 Aligned_cols=59 Identities=25% Similarity=0.446 Sum_probs=46.0
Q ss_pred EEEEEEeCCCCCCCCCeeEecCCccCCCCCCC----------------CCCCcCCHHHHHHHHHHhhcCCC--CCChhcH
Q psy90 58 YKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPS----------------DWKPAITIKQILLGIQDLLNEPN--IKDPAQA 119 (125)
Q Consensus 58 f~~~i~fp~~yP~~pP~v~f~t~i~HPni~~~----------------~W~p~~tl~~vl~~i~~ll~~p~--~~~p~n~ 119 (125)
..+.+.|+++||+.||.++... |.++.. +|+.+|+++.++++|...+-.-. .+.|++.
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~----p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k 88 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVK----PLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEK 88 (122)
T ss_pred eEeeeecccCCCCCCCcceeee----ecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcch
Confidence 5677899999999999998664 445544 89999999999999999887633 4455544
Q ss_pred H
Q psy90 120 E 120 (125)
Q Consensus 120 ~ 120 (125)
+
T Consensus 89 ~ 89 (122)
T KOG0897|consen 89 S 89 (122)
T ss_pred h
Confidence 3
No 26
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=97.59 E-value=0.0003 Score=46.78 Aligned_cols=70 Identities=20% Similarity=0.502 Sum_probs=46.2
Q ss_pred CcceeEEEecCCCCCCCCCCEEE--EEEEeCCCCCCCCCeeEecCCc-----cCCCCCCC---------CCCC-cCCHHH
Q psy90 37 NLMNWECSIPGKKGTPWESGSYK--LRMIFKDDYPSTPPKCKFEPPL-----FHPNVYPS---------DWKP-AITIKQ 99 (125)
Q Consensus 37 ~~~~w~~~i~Gp~~t~y~gg~f~--~~i~fp~~yP~~pP~v~f~t~i-----~HPni~~~---------~W~p-~~tl~~ 99 (125)
.+....++|. -.|+|..|. +.|-+|.+||..||.+...... -+.+|+.+ +|++ ..+|.+
T Consensus 31 ~LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL~~W~~~~s~L~~ 106 (121)
T PF05743_consen 31 LLLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYLQNWNPPSSNLVD 106 (121)
T ss_dssp EEEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHHHT--TTTS-HHH
T ss_pred eEEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchhccCCCCCCCHHH
Confidence 3444455553 248888886 5566899999999999775331 24488887 8988 899999
Q ss_pred HHHHHHHhhcC
Q psy90 100 ILLGIQDLLNE 110 (125)
Q Consensus 100 vl~~i~~ll~~ 110 (125)
++..+...|.+
T Consensus 107 lv~~l~~~F~~ 117 (121)
T PF05743_consen 107 LVQELQAVFSE 117 (121)
T ss_dssp HHHHHHHCCCH
T ss_pred HHHHHHHHHhH
Confidence 99988887763
No 27
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=97.42 E-value=0.00042 Score=46.63 Aligned_cols=57 Identities=33% Similarity=0.681 Sum_probs=49.8
Q ss_pred CCCEEEEEEEeCCCCCCCCCeeEecCCc---cCCCCCCC-------------CCCCcCCHHHHHHHHHHhhcC
Q psy90 54 ESGSYKLRMIFKDDYPSTPPKCKFEPPL---FHPNVYPS-------------DWKPAITIKQILLGIQDLLNE 110 (125)
Q Consensus 54 ~gg~f~~~i~fp~~yP~~pP~v~f~t~i---~HPni~~~-------------~W~p~~tl~~vl~~i~~ll~~ 110 (125)
.|+.+.+.|.+|+.||..||.|....+. +=|||+.+ .|.|.-++.++|.....+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999988654 57788777 689999999999988888884
No 28
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=96.72 E-value=0.0077 Score=38.45 Aligned_cols=70 Identities=20% Similarity=0.244 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEec--CCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCc
Q psy90 6 IGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIP--GKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL 81 (125)
Q Consensus 6 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~--Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i 81 (125)
..+...|+..|+..-+... ...... ....+.+.+. ....+.-....+.+.+.||++||..+|.|...+..
T Consensus 3 ~e~~~~EieaL~sIy~~~~-~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 3 EEQQEEEIEALQSIYPDDF-IEIESK-----SPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHHHHSSSSE-SSSTSS-----SSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHHHHcCCCc-cccccC-----CCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 4577888888886655544 111111 4455666662 12333445568999999999999999999877554
No 29
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=96.28 E-value=0.036 Score=35.05 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=22.3
Q ss_pred CCEEEEEEEeCCCCCCCCCeeEecCC
Q psy90 55 SGSYKLRMIFKDDYPSTPPKCKFEPP 80 (125)
Q Consensus 55 gg~f~~~i~fp~~yP~~pP~v~f~t~ 80 (125)
.-.+.+.+.||.+||..+|.|.+.+.
T Consensus 40 ~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 40 YVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred ceEEEEEEECCCCCCCCCCCeEEECC
Confidence 35588999999999999999988764
No 30
>KOG2391|consensus
Probab=96.19 E-value=0.064 Score=41.44 Aligned_cols=72 Identities=25% Similarity=0.598 Sum_probs=54.3
Q ss_pred CcceeEEEecCCCCCCCCCCEEEEEEE--eCCCCCCCCCeeEecCC-----ccCCCCCCC---------CCCC-cCCHHH
Q psy90 37 NLMNWECSIPGKKGTPWESGSYKLRMI--FKDDYPSTPPKCKFEPP-----LFHPNVYPS---------DWKP-AITIKQ 99 (125)
Q Consensus 37 ~~~~w~~~i~Gp~~t~y~gg~f~~~i~--fp~~yP~~pP~v~f~t~-----i~HPni~~~---------~W~p-~~tl~~ 99 (125)
+++....+| -.+|.|.+|.+=|. +.+.||+.||.+..... --|-+|+.+ +|.+ ++.|..
T Consensus 51 ~ll~~~GTI----p~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh~W~~pssdLv~ 126 (365)
T KOG2391|consen 51 LLLQLDGTI----PVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLHNWDPPSSDLVG 126 (365)
T ss_pred chhhccCcc----cccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhhccCCCccchHHH
Confidence 444444444 35788988886655 69999999998865422 138899988 8977 888999
Q ss_pred HHHHHHHhhcCCC
Q psy90 100 ILLGIQDLLNEPN 112 (125)
Q Consensus 100 vl~~i~~ll~~p~ 112 (125)
++.-+.+.|.++.
T Consensus 127 Liq~l~a~f~~~p 139 (365)
T KOG2391|consen 127 LIQELIAAFSEDP 139 (365)
T ss_pred HHHHHHHHhcCCC
Confidence 9999999988744
No 31
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=94.68 E-value=0.57 Score=31.20 Aligned_cols=72 Identities=18% Similarity=0.362 Sum_probs=48.9
Q ss_pred CcceeEEEecC--CCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCcc-------CCCCCCC-----------------C
Q psy90 37 NLMNWECSIPG--KKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLF-------HPNVYPS-----------------D 90 (125)
Q Consensus 37 ~~~~w~~~i~G--p~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~-------HPni~~~-----------------~ 90 (125)
.-..|.+ |.| -+.+.|.+..-.+-|.+|..||..+|..-+..+-. .||=... .
T Consensus 22 g~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~~G~~iP~~~~~~~~~~G~~wQrWSRH~~~ 100 (122)
T PF14462_consen 22 GGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLADGGPIPNAAEVTQTFDGRTWQRWSRHNNP 100 (122)
T ss_pred CCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEccCCCcCCchhcchhhcCCeeeeeecCCCCC
Confidence 3445644 554 45666999999999999999999988766654421 2211111 6
Q ss_pred CCC-cCCHHHHHHHHHHhhc
Q psy90 91 WKP-AITIKQILLGIQDLLN 109 (125)
Q Consensus 91 W~p-~~tl~~vl~~i~~ll~ 109 (125)
|.| .-+|.+.|..|...|.
T Consensus 101 W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 101 WRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred CCCCCCcHHHHHHHHHHHHh
Confidence 888 4578888888887664
No 32
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=94.17 E-value=0.027 Score=38.35 Aligned_cols=64 Identities=20% Similarity=0.205 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHh-------CCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCC--EEEEEEEeCCCCCCCCCe
Q psy90 4 IAIGRLSEERKGWRK-------DHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESG--SYKLRMIFKDDYPSTPPK 74 (125)
Q Consensus 4 ~~~~Rl~~E~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg--~f~~~i~fp~~yP~~pP~ 74 (125)
....||..|++.|-+ +....+.+.... +=++|...-.- .|+-- .|.+++.+|..||..||.
T Consensus 24 ~W~~RLKEEy~aLI~Yv~~nK~~DndWF~lesn~------~GT~W~GkCW~----~h~l~kYEF~~eFdIP~tYP~t~pE 93 (161)
T PF08694_consen 24 LWVQRLKEEYQALIKYVENNKENDNDWFRLESNK------EGTRWFGKCWY----IHNLLKYEFDLEFDIPVTYPTTAPE 93 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT---EEEEE-T------TSSEEEEEEEE----EETTEEEEEEEEEE--TTTTTS---
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCeEEeccCC------CCCccccEEEE----EeeeeeEEEeeecCCCccCCCCCcc
Confidence 457899999998753 223344444222 33455443320 11222 355667779999999999
Q ss_pred eEe
Q psy90 75 CKF 77 (125)
Q Consensus 75 v~f 77 (125)
|..
T Consensus 94 i~l 96 (161)
T PF08694_consen 94 IAL 96 (161)
T ss_dssp -B-
T ss_pred eec
Confidence 976
No 33
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=92.87 E-value=0.2 Score=34.91 Aligned_cols=51 Identities=24% Similarity=0.481 Sum_probs=40.3
Q ss_pred EEEEeCCCCCCCCCeeEecCCcc---CCCCCCC----------------CCCCcCCHHHHHHHHHHhhcC
Q psy90 60 LRMIFKDDYPSTPPKCKFEPPLF---HPNVYPS----------------DWKPAITIKQILLGIQDLLNE 110 (125)
Q Consensus 60 ~~i~fp~~yP~~pP~v~f~t~i~---HPni~~~----------------~W~p~~tl~~vl~~i~~ll~~ 110 (125)
+.|.|+.+||..+|.+.+..+.| +||+... +|.++.|++.+|..|..-|..
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLRD 126 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHHH
Confidence 56899999999999877765533 3555444 799999999999999988764
No 34
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=92.68 E-value=0.26 Score=37.54 Aligned_cols=86 Identities=22% Similarity=0.423 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCc-cC
Q psy90 5 AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL-FH 83 (125)
Q Consensus 5 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i-~H 83 (125)
..++|.+|+.++..+....+.. +. ++...++.+.. + .....++|.++.+||.++|.+..--++ +.
T Consensus 100 ~ys~ll~EIe~IGW~kl~~i~~---d~-----~ls~i~l~~~D---~---~R~H~l~l~l~~~yp~~~p~~~~~~P~~~~ 165 (291)
T PF09765_consen 100 YYSNLLKEIEAIGWDKLVQIQF---DD-----DLSTIKLKIFD---S---SRQHYLELKLPSNYPFEPPSCSLDLPIPFS 165 (291)
T ss_dssp GC-CHHHHHHHHHCGCCEEEEE----C-----CCSEEEEEEET---T---CEEEEEEEETTTTTTTSEEEECS-TTS-HH
T ss_pred HHHHHHHHHHHhccccceEEec---CC-----CccEEEEEEEc---C---CceEEEEEEECCCCCCCCceeeCCCCcchh
Confidence 3567889999888665422221 22 78888888872 1 256889999999999999976443332 11
Q ss_pred CCCCCCCCCC-cCCHHHHHHHHHHhhc
Q psy90 84 PNVYPSDWKP-AITIKQILLGIQDLLN 109 (125)
Q Consensus 84 Pni~~~~W~p-~~tl~~vl~~i~~ll~ 109 (125)
. .|.+ ..++.+++...+..+.
T Consensus 166 ~-----~w~~~~ssL~~v~~qF~~~le 187 (291)
T PF09765_consen 166 L-----SWSPSQSSLKDVVQQFQEALE 187 (291)
T ss_dssp H-----HHHCHT-SHHHHHHHHHHHHH
T ss_pred h-----hhcccccCHHHHHHHHHHHHH
Confidence 1 5888 7889888877666554
No 35
>KOG3357|consensus
Probab=90.56 E-value=0.58 Score=31.48 Aligned_cols=63 Identities=24% Similarity=0.356 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCC----------EEEEEEEeCCCCCCCCC
Q psy90 4 IAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESG----------SYKLRMIFKDDYPSTPP 73 (125)
Q Consensus 4 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg----------~f~~~i~fp~~yP~~pP 73 (125)
....||..|++.|...-.. ..+ +-..|.-.=..++||-|-|. .|.+++.+|-.||-.+|
T Consensus 27 ~wvqrlkeey~sli~yvqn------nk~-----~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tap 95 (167)
T KOG3357|consen 27 LWVQRLKEEYQSLIAYVQN------NKS-----NDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAP 95 (167)
T ss_pred HHHHHHHHHHHHHHHHHHh------Ccc-----cCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCc
Confidence 3578999999988632110 011 22223222234677777663 35566777999999999
Q ss_pred eeEe
Q psy90 74 KCKF 77 (125)
Q Consensus 74 ~v~f 77 (125)
.|..
T Consensus 96 eial 99 (167)
T KOG3357|consen 96 EIAL 99 (167)
T ss_pred cccc
Confidence 8864
No 36
>KOG4018|consensus
Probab=87.99 E-value=2.4 Score=30.81 Aligned_cols=62 Identities=19% Similarity=0.272 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhCCCCCe-EEeecCCCCCCCCcceeEEEecCCCCC--CCCCCEEEEEEEeCCCCCCCCCeeE
Q psy90 7 GRLSEERKGWRKDHPFGF-VAKPAKNPDGSLNLMNWECSIPGKKGT--PWESGSYKLRMIFKDDYPSTPPKCK 76 (125)
Q Consensus 7 ~Rl~~E~~~l~~~~~~~~-~~~~~~~~~~~~~~~~w~~~i~Gp~~t--~y~gg~f~~~i~fp~~yP~~pP~v~ 76 (125)
.-...|+..|...-+... .+.-. +...+.+.|.--.+. -|.| .+.+.++++.+||..+|-+.
T Consensus 5 EeQe~E~EaLeSIY~de~~~i~~~-------~~~~f~v~iq~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli~ 69 (215)
T KOG4018|consen 5 EEQEEELEALESIYPDEFKHINSE-------DPPIFEVTIQYEEGENDEPKG-SFILVFSLTENYPDEAPLIE 69 (215)
T ss_pred HHHHHHHHHHHHhccchhhhhhcc-------CCccceeeeecccccCCCccc-cEEEEEEccCCCCCCCccee
Confidence 445567777765544333 22111 333355666521111 1223 78999999999999999993
No 37
>KOG0309|consensus
Probab=87.59 E-value=3 Score=35.93 Aligned_cols=67 Identities=16% Similarity=0.155 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCC-EEEEEEEeCCCCCCC-CCeeEecCC
Q psy90 7 GRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESG-SYKLRMIFKDDYPST-PPKCKFEPP 80 (125)
Q Consensus 7 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg-~f~~~i~fp~~yP~~-pP~v~f~t~ 80 (125)
.-|..|+.-+-.. ...+.+...+- .-+.-.+.+.||-... .|- ..++.|.||.+||.. +|+++|..+
T Consensus 423 QnLgeE~S~Ig~k-~~nV~fEkidv-----a~Rsctvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 423 QNLGEEFSLIGVK-IRNVNFEKIDV-----ADRSCTVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hhHHhHHhHhhcc-ccccceEeecc-----ccceEEEEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEecC
Confidence 3455565555422 23333332322 3345566777654433 333 346788999999986 799999754
No 38
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=83.01 E-value=5.2 Score=31.08 Aligned_cols=55 Identities=24% Similarity=0.548 Sum_probs=40.5
Q ss_pred CCCCCEEEEEEEeCCCCCCCCCeeEec-CCccCCCCCCC----CCCCc--CCHHHHHHHHHH
Q psy90 52 PWESGSYKLRMIFKDDYPSTPPKCKFE-PPLFHPNVYPS----DWKPA--ITIKQILLGIQD 106 (125)
Q Consensus 52 ~y~gg~f~~~i~fp~~yP~~pP~v~f~-t~i~HPni~~~----~W~p~--~tl~~vl~~i~~ 106 (125)
||.|...+-+|.|...+|..||-+.|- ..-|+|....- +|++. -.+..++..+..
T Consensus 61 Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s~l~~L~~Wd~~dp~~Ll~li~EL~~ 122 (333)
T PF06113_consen 61 PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPSKLPSLVNWDPSDPNCLLNLISELRQ 122 (333)
T ss_pred eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChhhcchhhcCCCCCchHHHHHHHHHHH
Confidence 588999999999999999999999996 33488853332 89774 344455555443
No 39
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=72.72 E-value=8.6 Score=29.93 Aligned_cols=25 Identities=8% Similarity=0.327 Sum_probs=21.3
Q ss_pred CCEEEEEEEeCCCCCCCCCeeEecC
Q psy90 55 SGSYKLRMIFKDDYPSTPPKCKFEP 79 (125)
Q Consensus 55 gg~f~~~i~fp~~yP~~pP~v~f~t 79 (125)
+-.|-+.|.+|..||...|.++|.+
T Consensus 305 ~F~flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 305 DFTFLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred CeEEEEEEeccCCCCCcCCeEEEEe
Confidence 3357788899999999999999875
No 40
>smart00340 HALZ homeobox associated leucin zipper.
Probab=67.49 E-value=5 Score=21.62 Aligned_cols=16 Identities=25% Similarity=0.185 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHhCC
Q psy90 5 AIGRLSEERKGWRKDH 20 (125)
Q Consensus 5 ~~~Rl~~E~~~l~~~~ 20 (125)
-.+||++|+++|....
T Consensus 20 eNrRL~ke~~eLralk 35 (44)
T smart00340 20 ENRRLQKEVQELRALK 35 (44)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 4689999999998543
No 41
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=56.51 E-value=18 Score=24.52 Aligned_cols=24 Identities=38% Similarity=0.862 Sum_probs=21.8
Q ss_pred CCEEEEEEEeCCCCC-CCCCeeEec
Q psy90 55 SGSYKLRMIFKDDYP-STPPKCKFE 78 (125)
Q Consensus 55 gg~f~~~i~fp~~yP-~~pP~v~f~ 78 (125)
.|.|.|.-.+|..|| ..||-|.|.
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~ 89 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFK 89 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEE
Confidence 488999999999999 999999886
No 42
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=52.38 E-value=21 Score=25.39 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=21.9
Q ss_pred CCEEEEEEEeCCCCCCCCCeeEec
Q psy90 55 SGSYKLRMIFKDDYPSTPPKCKFE 78 (125)
Q Consensus 55 gg~f~~~i~fp~~yP~~pP~v~f~ 78 (125)
.|.|.|.=.+|--||..+|-|.|.
T Consensus 86 ~G~~~F~TI~PG~Y~gR~~HIH~~ 109 (188)
T cd03457 86 DGVVTFTTIFPGWYPGRATHIHFK 109 (188)
T ss_pred CccEEEEEECCCCCCCCCceEEEE
Confidence 488999999999999999999886
No 43
>KOG3285|consensus
Probab=52.04 E-value=29 Score=24.80 Aligned_cols=42 Identities=12% Similarity=0.152 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCC
Q psy90 4 IAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKG 50 (125)
Q Consensus 4 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~ 50 (125)
...+|+++|++.+.++-...++..|.-+ -...+.+.+..-.+
T Consensus 119 k~~~~iq~EIraviRQItasVtfLP~Le-----~~ctFdvLiyTdkD 160 (203)
T KOG3285|consen 119 KDLKRIQNEIRAVIRQITASVTFLPLLE-----EICTFDVLIYTDKD 160 (203)
T ss_pred hHHHHHHHHHHHHHHHHhhheeeccccc-----ceeEEEEEEEeCCC
Confidence 3578999999999998888888888776 55667777754333
No 44
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=51.44 E-value=16 Score=23.46 Aligned_cols=20 Identities=25% Similarity=0.675 Sum_probs=17.1
Q ss_pred ceeEEEecCCCCCCCCCCEEEE
Q psy90 39 MNWECSIPGKKGTPWESGSYKL 60 (125)
Q Consensus 39 ~~w~~~i~Gp~~t~y~gg~f~~ 60 (125)
.+|.+.|+| +.+|+|..|+|
T Consensus 1 ~kWkC~iCg--~~I~~gqlFTF 20 (101)
T PF09943_consen 1 KKWKCYICG--KPIYEGQLFTF 20 (101)
T ss_pred CceEEEecC--CeeeecceEEE
Confidence 379999997 67999999988
No 45
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=45.77 E-value=32 Score=23.75 Aligned_cols=24 Identities=29% Similarity=0.606 Sum_probs=21.4
Q ss_pred CCEEEEEEEeCCCCC-----CCCCeeEec
Q psy90 55 SGSYKLRMIFKDDYP-----STPPKCKFE 78 (125)
Q Consensus 55 gg~f~~~i~fp~~yP-----~~pP~v~f~ 78 (125)
.|.|.|.-.+|.-|| ..||-|.|.
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~ 100 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVS 100 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEE
Confidence 388999999999999 899999886
No 46
>KOG4445|consensus
Probab=45.14 E-value=30 Score=26.82 Aligned_cols=26 Identities=23% Similarity=0.491 Sum_probs=22.7
Q ss_pred CEEEEEEEeCCCCCCCCCeeEecCCc
Q psy90 56 GSYKLRMIFKDDYPSTPPKCKFEPPL 81 (125)
Q Consensus 56 g~f~~~i~fp~~yP~~pP~v~f~t~i 81 (125)
-.+.+.+..+..||...|.|+...+.
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nPR 70 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNPR 70 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCCC
Confidence 46788999999999999999998764
No 47
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=42.20 E-value=8.4 Score=33.45 Aligned_cols=25 Identities=28% Similarity=0.640 Sum_probs=0.0
Q ss_pred CEEEEEEEeCCCCCCCCCeeEecCC
Q psy90 56 GSYKLRMIFKDDYPSTPPKCKFEPP 80 (125)
Q Consensus 56 g~f~~~i~fp~~yP~~pP~v~f~t~ 80 (125)
.+=-+.|.+|.+||..+|.+.+.+.
T Consensus 714 ~VPPl~l~vP~~YP~~sp~~~~~~~ 738 (799)
T PF09606_consen 714 SVPPLRLTVPADYPRQSPQCSVDRD 738 (799)
T ss_dssp -------------------------
T ss_pred CCCCeeEeCCCCCCccCCcCcccHH
Confidence 3445788999999999999876543
No 48
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=41.51 E-value=83 Score=19.29 Aligned_cols=40 Identities=15% Similarity=0.304 Sum_probs=24.0
Q ss_pred ceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCC
Q psy90 39 MNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPP 80 (125)
Q Consensus 39 ~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~ 80 (125)
.+|.+.+.|+.+.--..-+=++...+.+.|+. |...+..+
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~p 41 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKP 41 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSST
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCC
Confidence 47888888877653334455677777777775 65555544
No 49
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=40.71 E-value=34 Score=19.68 Aligned_cols=18 Identities=17% Similarity=0.586 Sum_probs=11.1
Q ss_pred CCCCcCCHHHHHHHHHHh
Q psy90 90 DWKPAITIKQILLGIQDL 107 (125)
Q Consensus 90 ~W~p~~tl~~vl~~i~~l 107 (125)
+|.|.++|++++......
T Consensus 37 gW~p~~~L~~~i~~~w~W 54 (62)
T PF13950_consen 37 GWKPKYSLEDMIRDAWNW 54 (62)
T ss_dssp ----SSSHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHH
Confidence 899999999999765543
No 50
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=40.05 E-value=28 Score=23.46 Aligned_cols=28 Identities=14% Similarity=0.431 Sum_probs=20.1
Q ss_pred CcceeEEEecCCCCCCCC-CCEEEEEEEe
Q psy90 37 NLMNWECSIPGKKGTPWE-SGSYKLRMIF 64 (125)
Q Consensus 37 ~~~~w~~~i~Gp~~t~y~-gg~f~~~i~f 64 (125)
|...|.|++.|++||+.. +.+|-+.+.|
T Consensus 46 d~~~ytVtV~G~dGs~~~~n~tf~~~FiF 74 (139)
T PF04881_consen 46 DPEWYTVTVQGPDGSIRKSNNTFMYKFIF 74 (139)
T ss_pred CCcceEEEEECCCCcceeccccchheeeH
Confidence 777889999999998873 4555554444
No 51
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=36.08 E-value=42 Score=20.90 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHhC
Q psy90 3 GIAIGRLSEERKGWRKD 19 (125)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~ 19 (125)
..+.+||.||...+.+.
T Consensus 6 t~~vkRL~KE~~~Y~kE 22 (90)
T PF02970_consen 6 TGVVKRLLKEEASYEKE 22 (90)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35789999999888753
No 52
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=35.12 E-value=1.4e+02 Score=21.82 Aligned_cols=49 Identities=22% Similarity=0.380 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCC
Q psy90 3 GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67 (125)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~ 67 (125)
..+..||...++++++.. .. ...-|.+.+....+.-| || |.+.++|.++
T Consensus 8 ~s~~eR~~e~~~~~k~~L---------~~-----a~~GW~~~yyp~~~~~~-GG-y~f~~kF~~~ 56 (235)
T PF14135_consen 8 KSPAERINEALAEYKKIL---------TS-----APNGWKLEYYPKTDQSY-GG-YTFLMKFDDD 56 (235)
T ss_pred CCHHHHHHHHHHHHHHHH---------hc-----CCCceEEEEECCCCccC-Cc-EEEEEEECCC
Confidence 346789988888877433 11 33448788773333334 44 7777777544
No 53
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=33.36 E-value=99 Score=23.28 Aligned_cols=45 Identities=18% Similarity=0.299 Sum_probs=30.2
Q ss_pred CcceeEEEecCCCCCCC-CC---CEEEEEEEe-----CCCCCCCCCeeEecCCcc
Q psy90 37 NLMNWECSIPGKKGTPW-ES---GSYKLRMIF-----KDDYPSTPPKCKFEPPLF 82 (125)
Q Consensus 37 ~~~~w~~~i~Gp~~t~y-~g---g~f~~~i~f-----p~~yP~~pP~v~f~t~i~ 82 (125)
|..-|++.... .+|-- +| ..|+.++++ ..+-||++|+|+.+++-|
T Consensus 101 Dp~PWkl~YrV-~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~f 154 (276)
T PF00845_consen 101 DPIPWKLYYRV-EDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQF 154 (276)
T ss_pred CCCCeEEEEEe-ecCccccceeeeeeeceeeecccccccccccCCCceEeeeccc
Confidence 55568777773 44443 33 345555555 478999999999998854
No 54
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=33.33 E-value=61 Score=23.18 Aligned_cols=24 Identities=17% Similarity=0.425 Sum_probs=20.5
Q ss_pred CCEEEEEEEeCCCCCC-----CCCeeEec
Q psy90 55 SGSYKLRMIFKDDYPS-----TPPKCKFE 78 (125)
Q Consensus 55 gg~f~~~i~fp~~yP~-----~pP~v~f~ 78 (125)
.|.|.|.-..|..||. .||-|.|.
T Consensus 96 ~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 96 SGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 3789999999999998 88888775
No 55
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=33.31 E-value=63 Score=16.05 Aligned_cols=16 Identities=13% Similarity=-0.078 Sum_probs=11.2
Q ss_pred CChHHHHHHHHHHHHH
Q psy90 1 MSGIAIGRLSEERKGW 16 (125)
Q Consensus 1 ms~~~~~Rl~~E~~~l 16 (125)
+|....++|.+|+++.
T Consensus 14 ~sP~la~~iR~~ie~~ 29 (30)
T PF14824_consen 14 KSPRLARLIRKEIERL 29 (30)
T ss_dssp S-HHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHh
Confidence 3566778888888764
No 56
>PHA03200 uracil DNA glycosylase; Provisional
Probab=31.19 E-value=67 Score=24.14 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=20.0
Q ss_pred ceeEEEecCCCCCCCCCCEEE-EEEEeCCCCCCCCCee
Q psy90 39 MNWECSIPGKKGTPWESGSYK-LRMIFKDDYPSTPPKC 75 (125)
Q Consensus 39 ~~w~~~i~Gp~~t~y~gg~f~-~~i~fp~~yP~~pP~v 75 (125)
.+-+|+|.|- -||.||.=. +.+..+.+++. ||+.
T Consensus 83 ~~vKVVIlGQ--DPYh~gqA~GLaFSV~~~~~~-PpSL 117 (255)
T PHA03200 83 EDVKVVIVGQ--DPYHDGSACGLAFGTVRGRSA-PPSL 117 (255)
T ss_pred hheEEEEEec--CCCCCCccceEEEEeCCCCCC-CccH
Confidence 3468999984 478775433 34455666553 5544
No 57
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=30.28 E-value=76 Score=22.55 Aligned_cols=23 Identities=13% Similarity=0.330 Sum_probs=19.7
Q ss_pred CEEEEEEEeCCCCCC-----CCCeeEec
Q psy90 56 GSYKLRMIFKDDYPS-----TPPKCKFE 78 (125)
Q Consensus 56 g~f~~~i~fp~~yP~-----~pP~v~f~ 78 (125)
|.|.|.-.+|.-||. .||-|.|.
T Consensus 93 G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 93 GRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 789999999999995 78888775
No 58
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=29.83 E-value=42 Score=19.41 Aligned_cols=12 Identities=25% Similarity=0.224 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHH
Q psy90 6 IGRLSEERKGWR 17 (125)
Q Consensus 6 ~~Rl~~E~~~l~ 17 (125)
.+||++|++++-
T Consensus 36 r~rL~kEL~d~D 47 (59)
T PF12065_consen 36 RQRLRKELQDMD 47 (59)
T ss_pred HHHHHHHHHHcc
Confidence 468999998875
No 59
>COG1343 CRISPR-associated protein Cas2 [Defense mechanisms]
Probab=26.71 E-value=1.7e+02 Score=18.31 Aligned_cols=45 Identities=9% Similarity=0.105 Sum_probs=30.5
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCC
Q psy90 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGT 51 (125)
Q Consensus 1 ms~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t 51 (125)
+++....+|.+++..+.......+.+.+.... ..-.....|++++
T Consensus 39 l~~~~~~~l~~~~~kii~~~~Dsi~iy~~~~~------~~~~~~~iG~~~~ 83 (89)
T COG1343 39 LTPADLEKLKRRLKKIIDEDEDSIRIYPLRRR------AARTREVIGPEKS 83 (89)
T ss_pred cCHHHHHHHHHHHHhhhccccceEEEEEccch------hhccceeccCCCC
Confidence 35566788999999999888888888877641 2223445565554
No 60
>KOG1814|consensus
Probab=25.98 E-value=2.5e+02 Score=22.85 Aligned_cols=19 Identities=42% Similarity=0.896 Sum_probs=13.4
Q ss_pred EEEEEeCCCCCCC-CCeeEe
Q psy90 59 KLRMIFKDDYPST-PPKCKF 77 (125)
Q Consensus 59 ~~~i~fp~~yP~~-pP~v~f 77 (125)
.++..+|++||.. ||++..
T Consensus 77 vlkf~LP~~YPs~spP~f~l 96 (445)
T KOG1814|consen 77 VLKFHLPNDYPSVSPPKFEL 96 (445)
T ss_pred eeeeecCCccccCCCCceee
Confidence 4667789999976 565543
No 61
>KOG3696|consensus
Probab=25.86 E-value=1.2e+02 Score=23.71 Aligned_cols=37 Identities=30% Similarity=0.580 Sum_probs=25.5
Q ss_pred C-CCCEEEEEEEeC-----CCCCCCCCeeEecCCccCCCCCCC
Q psy90 53 W-ESGSYKLRMIFK-----DDYPSTPPKCKFEPPLFHPNVYPS 89 (125)
Q Consensus 53 y-~gg~f~~~i~fp-----~~yP~~pP~v~f~t~i~HPni~~~ 89 (125)
| +|...-++.+|= ++=+-..|+|.|.-.+|||||-..
T Consensus 284 w~~g~~ll~ddsf~ha~~~dgs~eds~rvV~~V~lwhpevq~~ 326 (334)
T KOG3696|consen 284 WAEGKCLLYDDSFLHALQHDGSSEDSPRVVFTVDLWHPEVQPA 326 (334)
T ss_pred ccccceeEeechhhcccccCCCcccCceEEEEEeccCcccccc
Confidence 5 455555566653 333445799999999999998653
No 62
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=25.77 E-value=1.3e+02 Score=23.53 Aligned_cols=41 Identities=17% Similarity=0.383 Sum_probs=28.9
Q ss_pred eeEEEecCCCCC-CCCCCEEEEEEEeC--CCCCCCCCeeEecCC
Q psy90 40 NWECSIPGKKGT-PWESGSYKLRMIFK--DDYPSTPPKCKFEPP 80 (125)
Q Consensus 40 ~w~~~i~Gp~~t-~y~gg~f~~~i~fp--~~yP~~pP~v~f~t~ 80 (125)
.|+..|+|-.++ -|++|.+++++.-. ++--...|+|||-.-
T Consensus 198 h~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriRfG~v 241 (345)
T COG3866 198 HDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIRFGMV 241 (345)
T ss_pred CCeeeeeccCCcccccCCceeEEEeccccccccccCCceEeeEE
Confidence 578899985555 78899999888732 233445679998643
No 63
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=24.11 E-value=1.1e+02 Score=19.13 Aligned_cols=26 Identities=15% Similarity=-0.034 Sum_probs=20.8
Q ss_pred CCCCEEEEEEEeCCCCCCCCCeeEecCC
Q psy90 53 WESGSYKLRMIFKDDYPSTPPKCKFEPP 80 (125)
Q Consensus 53 y~gg~f~~~i~fp~~yP~~pP~v~f~t~ 80 (125)
-+|..+.|...-|..|| .|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 46777888888899999 589988854
No 64
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.89 E-value=84 Score=20.08 Aligned_cols=22 Identities=32% Similarity=0.765 Sum_probs=18.5
Q ss_pred CcceeEEEecCCCCCCCCCCEEEE
Q psy90 37 NLMNWECSIPGKKGTPWESGSYKL 60 (125)
Q Consensus 37 ~~~~w~~~i~Gp~~t~y~gg~f~~ 60 (125)
.+-+|.+.++| +++-+|-.|.|
T Consensus 3 ~lkewkC~VCg--~~iieGqkFTF 24 (103)
T COG4847 3 GLKEWKCYVCG--GTIIEGQKFTF 24 (103)
T ss_pred ccceeeEeeeC--CEeeeccEEEE
Confidence 46789999986 67889999988
No 65
>KOG1047|consensus
Probab=23.79 E-value=87 Score=26.40 Aligned_cols=29 Identities=28% Similarity=0.636 Sum_probs=23.7
Q ss_pred CCCCCCEEEEEEEeCCCCCCC---CCeeEecCC
Q psy90 51 TPWESGSYKLRMIFKDDYPST---PPKCKFEPP 80 (125)
Q Consensus 51 t~y~gg~f~~~i~fp~~yP~~---pP~v~f~t~ 80 (125)
+||.=|.|.+ +.+|+.||+- -|-++|+|+
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 5687788887 5578889974 799999987
No 66
>PF04314 DUF461: Protein of unknown function (DUF461); InterPro: IPR007410 This entry represents a domain found in of proteins of unknown function, including DR1885 from Deinococcus radiodurans and CC3502 from Caulobacter crescentus (Caulobacter vibrioides), which share a potential metal binding motif H(M)X10MX21HXM. DR1885 was found to bind copper(I) through a histidine and three Mets in a cupredoxin-like fold []. The surface location of the copper-binding site as well as the type of coordination are well poised for metal transfer chemistry, suggesting that DR1885 might transfer copper, taking the role of Cox17 in bacteria (Cox17 being an accessory protein required for correct assembly of eukaryotic cyochrome c oxidase). ; PDB: 2K6W_A 2K6Z_A 2K6Y_A 2K70_A 1X9L_A 2JQA_A.
Probab=22.32 E-value=1.3e+02 Score=19.19 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=21.8
Q ss_pred eeEEEecCCCCCCCCCCEEEEEEEeCC
Q psy90 40 NWECSIPGKKGTPWESGSYKLRMIFKD 66 (125)
Q Consensus 40 ~w~~~i~Gp~~t~y~gg~f~~~i~fp~ 66 (125)
-.++.+.|+...+=.|..+.+.+.|-+
T Consensus 77 g~HlmL~g~~~~l~~G~~v~ltL~f~~ 103 (110)
T PF04314_consen 77 GYHLMLMGLKRPLKPGDTVPLTLTFED 103 (110)
T ss_dssp CCEEEEECESS-B-TTEEEEEEEEETT
T ss_pred CEEEEEeCCcccCCCCCEEEEEEEECC
Confidence 368899999989999999999999865
No 67
>PF12627 PolyA_pol_RNAbd: Probable RNA and SrmB- binding site of polymerase A; PDB: 1OU5_B 3H38_A 3H3A_B 3H39_B 3H37_A 3AQN_A 3AQK_A 3AQM_B 3AQL_B 1MIY_A ....
Probab=22.26 E-value=80 Score=17.59 Aligned_cols=19 Identities=21% Similarity=0.144 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHhCCC
Q psy90 3 GIAIGRLSEERKGWRKDHP 21 (125)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~~~ 21 (125)
..+..||..|+..+...+.
T Consensus 21 ~is~ERi~~El~kil~~~~ 39 (64)
T PF12627_consen 21 KISKERIREELEKILSSPN 39 (64)
T ss_dssp GS-HHHHHHHHHHHHTSTT
T ss_pred cCCHHHHHHHHHHHHcCCC
Confidence 4567899999999987664
No 68
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.05 E-value=1e+02 Score=17.44 Aligned_cols=16 Identities=38% Similarity=0.393 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHhC
Q psy90 4 IAIGRLSEERKGWRKD 19 (125)
Q Consensus 4 ~~~~Rl~~E~~~l~~~ 19 (125)
...+|+++|+++++++
T Consensus 48 ~~~~~~~k~l~~le~e 63 (68)
T PF06305_consen 48 RRIRRLRKELKKLEKE 63 (68)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456777777777754
No 69
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=20.72 E-value=1.4e+02 Score=22.89 Aligned_cols=24 Identities=29% Similarity=0.589 Sum_probs=20.1
Q ss_pred CCEEEEEEEeCCCCC------------------CCCCeeEec
Q psy90 55 SGSYKLRMIFKDDYP------------------STPPKCKFE 78 (125)
Q Consensus 55 gg~f~~~i~fp~~yP------------------~~pP~v~f~ 78 (125)
.|.|.|.-..|.-|| ..||-|.|.
T Consensus 180 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 221 (285)
T TIGR02439 180 EGRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFF 221 (285)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEE
Confidence 388999999999997 578888875
No 70
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=20.45 E-value=1.1e+02 Score=20.68 Aligned_cols=18 Identities=17% Similarity=0.200 Sum_probs=15.1
Q ss_pred CChHHHHHHHHHHHHHHh
Q psy90 1 MSGIAIGRLSEERKGWRK 18 (125)
Q Consensus 1 ms~~~~~Rl~~E~~~l~~ 18 (125)
|+....+||++|+..|+.
T Consensus 2 ~T~~g~~~L~~el~~L~~ 19 (151)
T TIGR01462 2 LTQEGYEKLKEELEYLKT 19 (151)
T ss_pred cCHHHHHHHHHHHHHHHh
Confidence 567788999999999975
Done!