Query psy90
Match_columns 125
No_of_seqs 146 out of 1095
Neff 8.2
Searched_HMMs 29240
Date Sat Aug 17 01:07:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy90.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/90hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ayz_A UBC2, ubiquitin-conjuga 100.0 1.2E-44 4E-49 252.5 14.7 120 1-125 1-130 (169)
2 2c2v_B Ubiquitin-conjugating e 100.0 1.5E-44 5E-49 248.7 13.5 120 1-125 2-131 (154)
3 2aak_A UBC1, ubiquitin conjuga 100.0 3E-44 1E-48 246.7 14.7 120 1-125 1-130 (152)
4 1zdn_A Ubiquitin-conjugating e 100.0 3.5E-44 1.2E-48 247.7 14.9 120 1-125 10-139 (158)
5 2gjd_A Ubiquitin-conjugating e 100.0 2.3E-44 7.8E-49 248.5 13.7 125 1-125 1-137 (157)
6 4gpr_A Ubiquitin-conjugating e 100.0 9.4E-44 3.2E-48 244.0 15.7 119 2-125 2-130 (151)
7 3rcz_B SUMO-conjugating enzyme 100.0 4.4E-44 1.5E-48 248.3 14.0 124 2-125 8-143 (163)
8 1yrv_A Ubiquitin-conjugating l 100.0 4.8E-44 1.6E-48 249.4 14.2 120 1-125 20-152 (169)
9 2e2c_A Ubiquitin conjugating e 100.0 1.3E-43 4.3E-48 244.5 15.3 120 1-125 6-135 (156)
10 2ucz_A UBC7, ubiquitin conjuga 100.0 1.2E-43 4.2E-48 246.5 14.9 121 1-125 1-144 (165)
11 2grr_A Ubiquitin-conjugating e 100.0 1.2E-43 4.1E-48 245.7 14.3 125 1-125 4-140 (161)
12 2ayv_A Ubiquitin-conjugating e 100.0 2.1E-43 7.2E-48 245.5 15.3 119 2-125 19-147 (166)
13 1z2u_A Ubiquitin-conjugating e 100.0 2.1E-43 7.1E-48 242.0 14.3 119 2-125 2-130 (150)
14 1i7k_A Ubiquitin-conjugating e 100.0 1.6E-43 5.5E-48 248.6 13.9 120 1-125 27-156 (179)
15 2bep_A Ubiquitin-conjugating e 100.0 4.2E-43 1.4E-47 242.6 15.0 120 1-125 5-138 (159)
16 2c4o_A Ubiquitin-conjugating e 100.0 5.8E-43 2E-47 243.2 15.6 119 2-125 17-145 (165)
17 3h8k_A Ubiquitin-conjugating e 100.0 9.2E-43 3.2E-47 241.9 15.6 120 2-125 1-143 (164)
18 1yh2_A HSPC150 protein similar 100.0 1E-42 3.5E-47 242.8 15.7 119 2-125 2-134 (169)
19 2r0j_A Ubiquitin carrier prote 100.0 3.2E-43 1.1E-47 240.9 12.5 116 5-125 2-127 (149)
20 1fxt_A Ubiquitin-conjugating e 100.0 5.5E-43 1.9E-47 239.7 13.1 117 5-125 2-129 (149)
21 2pwq_A Ubiquitin conjugating e 100.0 1E-42 3.4E-47 250.7 14.9 119 2-125 21-150 (216)
22 3k9o_A Ubiquitin-conjugating e 100.0 6.8E-43 2.3E-47 249.6 13.9 120 1-125 2-135 (201)
23 2awf_A Ubiquitin-conjugating e 100.0 1.8E-42 6E-47 242.1 14.6 120 2-125 15-157 (172)
24 1jat_A Ubiquitin-conjugating e 100.0 4.7E-43 1.6E-47 241.4 11.1 118 3-125 4-131 (155)
25 3rz3_A Ubiquitin-conjugating e 100.0 4.9E-42 1.7E-46 242.0 15.4 118 3-125 6-147 (183)
26 2q0v_A Ubiquitin-conjugating e 100.0 4.1E-42 1.4E-46 236.8 13.9 121 3-125 20-153 (156)
27 1jat_B Ubiquitin-conjugating e 100.0 1.1E-42 3.7E-47 235.5 10.7 123 1-125 2-138 (138)
28 3bzh_A Ubiquitin-conjugating e 100.0 1.2E-41 4E-46 241.8 15.6 118 3-125 47-174 (194)
29 2f4z_A Tgtwinscan_2721 - E2 do 100.0 5.4E-42 1.8E-46 243.3 13.5 118 3-125 31-172 (193)
30 3e46_A Ubiquitin-conjugating e 100.0 1.4E-41 4.8E-46 249.6 15.1 120 1-125 54-187 (253)
31 2y9m_A Ubiquitin-conjugating e 100.0 2.3E-41 8E-46 236.4 14.4 120 1-125 3-147 (172)
32 1wzv_A Ubiquitin-conjugating e 100.0 3.1E-41 1.1E-45 232.3 13.4 116 4-125 4-131 (155)
33 1tte_A Ubiquitin-conjugating e 100.0 6.5E-42 2.2E-46 246.3 9.5 118 4-125 2-130 (215)
34 1y8x_A Ubiquitin-conjugating e 100.0 9.2E-41 3.2E-45 231.0 13.8 115 3-125 5-130 (160)
35 3fn1_B NEDD8-conjugating enzym 100.0 2.2E-40 7.7E-45 230.5 14.3 118 3-125 13-147 (167)
36 2nvu_C NEDD8-conjugating enzym 100.0 1.8E-40 6.2E-45 233.4 13.2 116 2-125 24-150 (180)
37 2a4d_A Ubiquitin-conjugating e 100.0 6.3E-40 2.2E-44 226.6 14.9 119 3-123 24-157 (160)
38 2onu_A Ubiquitin-conjugating e 100.0 5.8E-41 2E-45 230.3 8.7 114 4-125 2-127 (152)
39 1c4z_D UBCH7, ubiquitin conjug 100.0 2.9E-40 9.9E-45 227.3 10.9 116 5-125 3-129 (154)
40 2z5d_A Ubiquitin-conjugating e 100.0 1.7E-40 6E-45 233.0 9.9 116 1-125 20-149 (179)
41 4ds2_A Ubiquitin-conjugating e 100.0 6.1E-40 2.1E-44 228.3 11.5 120 1-125 5-151 (167)
42 4ddg_A Ubiquitin-conjugating e 100.0 1.6E-39 5.6E-44 252.1 14.5 119 2-125 1-129 (399)
43 3o2u_A NEDD8-conjugating enzym 100.0 4.2E-39 1.4E-43 228.1 13.4 115 3-125 28-159 (190)
44 2fo3_A Ubiquitin-conjugating e 100.0 7.7E-39 2.6E-43 213.4 13.6 107 4-115 6-123 (125)
45 1yf9_A Ubiquitin carrier prote 100.0 2E-39 7E-44 226.4 11.0 113 4-125 12-136 (171)
46 2hlw_A Ubiquitin-conjugating e 100.0 3.3E-39 1.1E-43 225.0 11.2 118 4-123 35-167 (170)
47 2h2y_A Ubiquitin-conjugating e 100.0 1.2E-37 4.2E-42 210.2 14.9 105 4-113 20-135 (136)
48 2a7l_A Hypothetical ubiquitin- 100.0 4.5E-37 1.5E-41 207.4 11.6 103 1-109 20-136 (136)
49 3ceg_A Baculoviral IAP repeat- 100.0 5.4E-35 1.8E-39 220.3 12.9 116 1-121 73-217 (323)
50 2f4w_A Ubiquitin-conjugating e 100.0 2.7E-33 9.2E-38 197.9 13.7 106 3-115 13-131 (187)
51 1zuo_A Hypothetical protein LO 100.0 3.6E-34 1.2E-38 202.2 8.2 109 1-114 24-159 (186)
52 2z6o_A UFM1-conjugating enzyme 99.9 6.3E-26 2.2E-30 155.6 1.7 85 6-101 34-143 (172)
53 3r3q_A Suppressor protein STP2 99.7 1E-16 3.4E-21 110.4 9.3 105 6-115 30-161 (162)
54 3kpa_A Probable ubiquitin fold 99.5 3.4E-15 1.2E-19 100.5 -1.0 75 4-89 34-119 (168)
55 3obq_A Tumor susceptibility ge 99.2 1E-10 3.4E-15 79.2 8.0 69 37-110 52-138 (146)
56 2ebm_A RWD domain-containing p 96.9 0.0089 3.1E-07 38.6 8.5 68 5-79 11-78 (128)
57 2day_A Ring finger protein 25; 96.8 0.028 9.4E-07 36.2 10.6 71 7-80 11-83 (128)
58 3zqs_A E3 ubiquitin-protein li 96.3 0.072 2.5E-06 37.0 10.3 83 7-109 4-87 (186)
59 2yz0_A Serine/threonine-protei 96.1 0.073 2.5E-06 34.6 9.5 74 6-80 12-86 (138)
60 2ebk_A RWD domain-containing p 95.3 0.034 1.2E-06 35.8 5.1 68 7-79 10-79 (128)
61 2daw_A RWD domain containing p 94.5 0.24 8.2E-06 33.0 7.9 72 5-80 15-99 (154)
62 1ukx_A GCN2, GCN2 EIF2alpha ki 94.4 0.54 1.8E-05 30.2 9.3 73 6-79 12-86 (137)
63 2dax_A Protein C21ORF6; RWD do 92.8 0.51 1.7E-05 31.1 7.0 24 57-80 74-97 (152)
64 3u3c_B Paxillin LD2 peptide; 4 54.4 12 0.00041 16.7 2.2 20 5-24 6-25 (26)
65 2jrw_A Cyclic extended PEP.1; 39.9 12 0.00041 16.7 1.0 16 69-84 4-19 (26)
66 2rf4_B DNA-directed RNA polyme 38.4 14 0.00049 22.1 1.5 13 5-17 63-75 (87)
67 2bum_A Protocatechuate 3,4-dio 32.5 40 0.0014 23.4 3.3 25 54-78 109-138 (209)
68 3g9r_A Fusion complex of HIV-1 31.5 31 0.0011 17.5 1.9 14 5-18 29-42 (42)
69 3qrl_A Transcription initiatio 24.6 1.5E+02 0.0051 19.3 5.5 44 37-82 31-77 (140)
70 1qsd_A Protein (beta-tubulin b 24.3 46 0.0016 20.6 2.1 17 3-19 10-26 (106)
71 3mxz_A Tubulin-specific chaper 24.1 54 0.0018 20.6 2.5 17 3-19 14-30 (116)
72 1h7c_A Tubulin-specific chaper 22.1 63 0.0022 20.0 2.5 17 3-19 13-29 (108)
73 3kxt_A Chromatin protein CREN7 20.8 65 0.0022 17.5 2.0 11 60-70 46-56 (56)
No 1
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=1.2e-44 Score=252.51 Aligned_cols=120 Identities=41% Similarity=0.778 Sum_probs=115.5
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCC
Q psy90 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPP 80 (125)
Q Consensus 1 ms~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~ 80 (125)
||+.+.+||++|+++++++++.|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus 1 Ms~~a~~RL~kEl~~l~~~~~~gi~~~p~~~-----nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~ 75 (169)
T 1ayz_A 1 MSTPARRRLMRDFKRMKEDAPPGVSASPLPD-----NVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSE 75 (169)
T ss_dssp -CCHHHHHHHHHHHHHHHSCCTTEEEEEETT-----EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEEecCC-----ccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccC
Confidence 8889999999999999999999999998876 99999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 81 LFHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 81 i~HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
||||||+.+ +|+|+++|++||.+|+++|.+|++++|+|.+||++|
T Consensus 76 i~HPNI~~~G~ICl~iL~~~WsP~~~i~~vL~si~~ll~~Pn~~~P~n~~aa~~~ 130 (169)
T 1ayz_A 76 MFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLF 130 (169)
T ss_dssp CCCTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHH
T ss_pred CccCCCCCCCeEeehhhccCCCCcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Confidence 999999987 799999999999999999999999999999999875
No 2
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.5e-44 Score=248.72 Aligned_cols=120 Identities=31% Similarity=0.597 Sum_probs=113.8
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCC
Q psy90 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPP 80 (125)
Q Consensus 1 ms~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~ 80 (125)
||..+.+||++|+++++++++.|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus 2 ~s~~~~~RL~kEl~~l~~~~~~~i~~~~~~~-----~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 76 (154)
T 2c2v_B 2 GSAGLPRRIIKETQRLLAEPVPGIKAEPDES-----NARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTK 76 (154)
T ss_dssp CSCSCCHHHHHHHHHHHHSCCTTEEEEECSS-----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCEEEEECCC-----chheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecC
Confidence 6778899999999999999999999998876 99999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 81 LFHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 81 i~HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
+|||||+.+ +|+|++||++||.+|+++|.+|+++||+|.|||++|
T Consensus 77 i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~ 131 (154)
T 2c2v_B 77 IYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQW 131 (154)
T ss_dssp CCCTTBCTTCBBCCHHHHTSCCTTCCHHHHHHHHHHHTTSCCCCCC--CHHHHHH
T ss_pred cccCcCccCCeEEchhccCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence 999999976 899999999999999999999999999999999876
No 3
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00 E-value=3e-44 Score=246.70 Aligned_cols=120 Identities=41% Similarity=0.816 Sum_probs=116.3
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCC
Q psy90 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPP 80 (125)
Q Consensus 1 ms~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~ 80 (125)
||+.+.+||++|+++++++++.|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus 1 Ms~~a~~RL~~E~~~l~~~~~~~i~~~~~~~-----~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 75 (152)
T 2aak_A 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----NIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSR 75 (152)
T ss_dssp CCCHHHHHHHHHHHHHHHSCCTTEEEEEETT-----EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEEeCCC-----CccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecC
Confidence 8989999999999999999999999998876 99999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 81 LFHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 81 i~HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
+|||||+.+ +|+|++||++||.+|+++|.+|++++|+|.+||++|
T Consensus 76 i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~ 130 (152)
T 2aak_A 76 MFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMY 130 (152)
T ss_dssp CCCTTBCTTSBBCCGGGTTSCCTTCCHHHHHHHHHHHHTSCCTTSCSSHHHHHHH
T ss_pred cccCCCCCCCEEechhhcCCCCCCCcHHHHHHHHHHHHhCCCCCccccHHHHHHH
Confidence 999999987 799999999999999999999999999999999875
No 4
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=3.5e-44 Score=247.74 Aligned_cols=120 Identities=30% Similarity=0.592 Sum_probs=115.8
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCC
Q psy90 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPP 80 (125)
Q Consensus 1 ms~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~ 80 (125)
||..+.+||++|+++++++++.|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus 10 ~s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~-----~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 84 (158)
T 1zdn_A 10 LPPHIIRLVYKEVTTLTADPPDGIKVFPNEE-----DLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTK 84 (158)
T ss_dssp SCHHHHHHHHHHHHHHHHSCCTTEEEEECSS-----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred cCHHHHHHHHHHHHHHHhCCCCCEEEEECCC-----ChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccC
Confidence 6788999999999999999999999998766 99999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 81 LFHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 81 i~HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
+|||||+.+ +|+|+++|++||.+|+++|.+|+++||+|.|||++|
T Consensus 85 i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~p~n~~aa~~~ 139 (158)
T 1zdn_A 85 IFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLL 139 (158)
T ss_dssp CCCTTBCTTSBBCHHHHTTTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHH
T ss_pred cccCCCCCCCEEehhhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence 999999987 899999999999999999999999999999999875
No 5
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00 E-value=2.3e-44 Score=248.48 Aligned_cols=125 Identities=58% Similarity=1.141 Sum_probs=116.0
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCC
Q psy90 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPP 80 (125)
Q Consensus 1 ms~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~ 80 (125)
||+.+.+||++|+++++++++.|+++.+..+.|+..|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus 1 Ms~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 80 (157)
T 2gjd_A 1 MSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAG 80 (157)
T ss_dssp --CHHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTT
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCC
Confidence 89899999999999999999999999988654444489999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCC------------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 81 LFHPNVYPS------------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 81 i~HPni~~~------------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
+|||||+.+ +|+|++||++||.+|+++|.+|++++|+|.+||++|
T Consensus 81 i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~ 137 (157)
T 2gjd_A 81 FYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSF 137 (157)
T ss_dssp CCCTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTCCCCHHHHHHH
T ss_pred CccCCCCCCCcEeeecccCCCCCCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHH
Confidence 999999876 399999999999999999999999999999999875
No 6
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00 E-value=9.4e-44 Score=243.99 Aligned_cols=119 Identities=30% Similarity=0.703 Sum_probs=114.9
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCc
Q psy90 2 SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL 81 (125)
Q Consensus 2 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i 81 (125)
++.+.+||++|+++++++++.|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++
T Consensus 2 a~~a~~RL~kEl~~l~~~~~~~i~~~p~~~-----nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i 76 (151)
T 4gpr_A 2 AAMAMRRIQKELREIQQDPPCNCSAGPVGD-----DIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKV 76 (151)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTEEEEESSS-----CTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCC
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEEcCC-----CceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCc
Confidence 467899999999999999999999999876 999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 82 FHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 82 ~HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
|||||+.+ +|+|++||++||.+|+++|.+|+++||+|.|||++|
T Consensus 77 ~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~ 130 (151)
T 4gpr_A 77 YHPNINKNGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVL 130 (151)
T ss_dssp CBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHCCCTTSCSSHHHHHHH
T ss_pred ccceECCCCEEEcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Confidence 99999987 899999999999999999999999999999999876
No 7
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00 E-value=4.4e-44 Score=248.34 Aligned_cols=124 Identities=69% Similarity=1.301 Sum_probs=116.7
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCc
Q psy90 2 SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL 81 (125)
Q Consensus 2 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i 81 (125)
|..|.+||+||+++++++++.|+++.+.++.|+..|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|
T Consensus 8 ~~~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~i 87 (163)
T 3rcz_B 8 SSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPL 87 (163)
T ss_dssp -CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCC
T ss_pred cHHHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCCC
Confidence 45799999999999999999999999987655555899999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC------------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 82 FHPNVYPS------------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 82 ~HPni~~~------------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
|||||+.+ +|+|++||++||.+|+++|.+|++++|+|.+||++|
T Consensus 88 ~HPnV~~~G~iCl~iL~~~~~W~p~~ti~~vL~~i~~ll~~P~~~~p~n~~aa~~~ 143 (163)
T 3rcz_B 88 FHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMF 143 (163)
T ss_dssp CSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHH
T ss_pred ccCCCCCCCcEeccccCCCCCcCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHH
Confidence 99999976 399999999999999999999999999999999875
No 8
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=4.8e-44 Score=249.38 Aligned_cols=120 Identities=32% Similarity=0.593 Sum_probs=114.9
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCC
Q psy90 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPP 80 (125)
Q Consensus 1 ms~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~ 80 (125)
|++.+.+||++|+++|+++++.|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus 20 M~~~a~~RL~kEl~~l~~~~~~gi~~~p~~~-----nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~ 94 (169)
T 1yrv_A 20 MHGRAYLLLHRDFCDLKENNYKGITAKPVSE-----DMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITI 94 (169)
T ss_dssp GGCHHHHHHHHHHHHHHHHCCTTEEEEECST-----TSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSC
T ss_pred cChHHHHHHHHHHHHHHhCCCCCEEEEEcCC-----ccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCC
Confidence 7888999999999999999999999998876 99999999999999999999999999999999999999999999
Q ss_pred ccCCCC-CCC------------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 81 LFHPNV-YPS------------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 81 i~HPni-~~~------------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
|||||| +.+ +|+|++||++||.+|+++|.+|+++||+|.|||++|
T Consensus 95 i~HPNI~~~~G~ICL~iL~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~eaa~l~ 152 (169)
T 1yrv_A 95 PFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARIL 152 (169)
T ss_dssp CCCTTBCTTTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHH
T ss_pred CccCcccCCCCeEeehhhcCCcCCCCcCCHHHHHHHHHHHHhCCCCCCchhHHHHHHH
Confidence 999999 544 699999999999999999999999999999999976
No 9
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00 E-value=1.3e-43 Score=244.52 Aligned_cols=120 Identities=37% Similarity=0.630 Sum_probs=115.0
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCC
Q psy90 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPP 80 (125)
Q Consensus 1 ms~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~ 80 (125)
|++.+.+||++|+++++++++.|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus 6 ~~~~~~~RL~kEl~~l~~~~~~~i~~~p~~~-----~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 80 (156)
T 2e2c_A 6 ERHSVSKRLQQELRTLLMSGDPGITAFPDGD-----NLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTP 80 (156)
T ss_dssp SCCCHHHHHHHHHHHHHHHCCTTEEEEESSS-----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred cchHHHHHHHHHHHHHHhCCCCCEEEEECCC-----CccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCC
Confidence 4567899999999999999999999998766 99999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 81 LFHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 81 i~HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
+|||||+.+ +|+|++||++||.+|+++|.+|++++|+|.|||++|
T Consensus 81 i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~pn~~~p~n~~aa~~~ 135 (156)
T 2e2c_A 81 CWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW 135 (156)
T ss_dssp CCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHT
T ss_pred cccCCCccCceEECccccccCCCCCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHh
Confidence 999999987 799999999999999999999999999999999987
No 10
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=1.2e-43 Score=246.54 Aligned_cols=121 Identities=39% Similarity=0.806 Sum_probs=114.3
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCC
Q psy90 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPP 80 (125)
Q Consensus 1 ms~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~ 80 (125)
||+.+.+||++|+++|+++++.|+++.+.++. |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus 1 M~~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~----~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~ 76 (165)
T 2ucz_A 1 MSKTAQKRLLKELQQLIKDSPPGIVAGPKSEN----NIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPS 76 (165)
T ss_dssp -CHHHHHHHHHHHHHHHHSCCTTEEEEESSSS----CCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEEECCCC----CccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCC
Confidence 89999999999999999999999999887532 99999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCC-----------------------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 81 LFHPNVYPS-----------------------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 81 i~HPni~~~-----------------------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
+|||||+.+ +|+|++||++||.+|+++|.+|++++|+|.+||++|
T Consensus 77 i~HPNv~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~ 144 (165)
T 2ucz_A 77 ILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILW 144 (165)
T ss_dssp CSCTTBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHH
T ss_pred CccCCCCCCCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHH
Confidence 999999854 599999999999999999999999999999999875
No 11
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00 E-value=1.2e-43 Score=245.73 Aligned_cols=125 Identities=85% Similarity=1.552 Sum_probs=116.9
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCC
Q psy90 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPP 80 (125)
Q Consensus 1 ms~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~ 80 (125)
|++.+.+||++|+++++++++.|+++.+..+.++..|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus 4 M~~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 83 (161)
T 2grr_A 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP 83 (161)
T ss_dssp CCHHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecC
Confidence 88889999999999999999999999887543333399999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCC------------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 81 LFHPNVYPS------------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 81 i~HPni~~~------------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
+|||||+.+ +|+|+++|++||.+|+++|.+|++++|+|.+||++|
T Consensus 84 i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~ 140 (161)
T 2grr_A 84 LFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIY 140 (161)
T ss_dssp CCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred cccCCCCCCCeEeehhcCCCCCcCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHH
Confidence 999999976 499999999999999999999999999999999875
No 12
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=2.1e-43 Score=245.54 Aligned_cols=119 Identities=34% Similarity=0.726 Sum_probs=114.0
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCc
Q psy90 2 SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL 81 (125)
Q Consensus 2 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i 81 (125)
++.+.+||++|+++++++++.|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|
T Consensus 19 ~~~~~~RL~kEl~~l~~~~~~gi~~~~~~~-----nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i 93 (166)
T 2ayv_A 19 FQGALKRINKELNDLSKDPPTNCSAGPVGD-----DMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKI 93 (166)
T ss_dssp CTTHHHHHHHHHHHHHHSCCTTEEEEECSS-----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCC
T ss_pred CcHHHHHHHHHHHHHHhCCCCCEEEEEcCC-----CcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCC
Confidence 356889999999999999999999999776 999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 82 FHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 82 ~HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
|||||+.+ +|+|++||++||.+|+++|.+|+++||+|.+||++|
T Consensus 94 ~HPNI~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pn~~~Pln~~aa~l~ 147 (166)
T 2ayv_A 94 YHPNINSQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLY 147 (166)
T ss_dssp CBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred cCCcCCCCCeEEcccccccCCCCCcHHHHHHHHHHHHhCCCCCchhhHHHHHHH
Confidence 99999977 799999999999999999999999999999999875
No 13
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00 E-value=2.1e-43 Score=242.04 Aligned_cols=119 Identities=36% Similarity=0.736 Sum_probs=114.3
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCc
Q psy90 2 SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL 81 (125)
Q Consensus 2 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i 81 (125)
|..+.+||++|+++++++++.|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|
T Consensus 2 s~~~~~RL~kEl~~l~~~~~~~~~~~~~~~-----~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i 76 (150)
T 1z2u_A 2 SHMALKRIQKELQDLGRDPPAQCSAGPVGD-----DLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 76 (150)
T ss_dssp CCHHHHHHHHHHHHHHHSCCSSEEEEEETT-----EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCC
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEECCC-----cceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCc
Confidence 467899999999999999999999998776 999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 82 FHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 82 ~HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
|||||+.+ +|+|++||++||.+|+++|.+|++++|+|.+||++|
T Consensus 77 ~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~ 130 (150)
T 1z2u_A 77 YHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 130 (150)
T ss_dssp CBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred ccCcCCCCCeEeeccccCCCCCCCCHHHHHHHHHHHhhCCCCCCccCHHHHHHH
Confidence 99999987 799999999999999999999999999999999875
No 14
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.6e-43 Score=248.62 Aligned_cols=120 Identities=36% Similarity=0.608 Sum_probs=113.5
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCC
Q psy90 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPP 80 (125)
Q Consensus 1 ms~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~ 80 (125)
|++.+.+||++|+++|+++++.|+++.+.++ |+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+
T Consensus 27 ~~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~-----nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~ 101 (179)
T 1i7k_A 27 ARGPVGKRLQQELMTLMMSGDKGISAFPESD-----NLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTP 101 (179)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTEEEEEETT-----EEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred cChHHHHHHHHHHHHHHhCCCCCEEEEEcCC-----cccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecC
Confidence 5677899999999999999999999998776 99999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 81 LFHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 81 i~HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
||||||+.+ +|+|+++|++||.+|+++|.+|+++||+|.+||++|
T Consensus 102 i~HPNV~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~~aa~l~ 156 (179)
T 1i7k_A 102 CYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW 156 (179)
T ss_dssp CCSTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHT
T ss_pred CccCccccCCeEEcccCcCcCCCCCCHHHHHHHHHHHHhCCCCcchhhHHHHHHh
Confidence 999999987 799999999999999999999999999999999987
No 15
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00 E-value=4.2e-43 Score=242.58 Aligned_cols=120 Identities=31% Similarity=0.578 Sum_probs=114.2
Q ss_pred CChHHHHHHHHHHHHHHhC---CCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEe
Q psy90 1 MSGIAIGRLSEERKGWRKD---HPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKF 77 (125)
Q Consensus 1 ms~~~~~Rl~~E~~~l~~~---~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f 77 (125)
||+.+.+||++|+++|+++ ++.|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|
T Consensus 5 Ms~~a~~RL~kEl~~l~~~~~~~~~~i~~~~~~~-----~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f 79 (159)
T 2bep_A 5 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDE-----NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRF 79 (159)
T ss_dssp CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSS-----SSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEE
T ss_pred chHHHHHHHHHHHHHHHhcCCCCCCCEEEEeCCC-----chheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEe
Confidence 7888999999999999985 578999999876 99999999999999999999999999999999999999999
Q ss_pred cCCccCCCCCC-C----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 78 EPPLFHPNVYP-S----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 78 ~t~i~HPni~~-~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
.|+||||||+. + +|+|++|+++||.+|+++|.+|++++|+|.+||++|
T Consensus 80 ~t~i~HPni~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~ 138 (159)
T 2bep_A 80 ITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQY 138 (159)
T ss_dssp SSCCCBTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred eCCCCccCCCCCCCEEeChhhhccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence 99999999995 3 699999999999999999999999999999999876
No 16
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00 E-value=5.8e-43 Score=243.15 Aligned_cols=119 Identities=34% Similarity=0.737 Sum_probs=114.2
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCc
Q psy90 2 SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL 81 (125)
Q Consensus 2 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i 81 (125)
.+.+.+||++|+++++++++.|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|
T Consensus 17 ~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~-----nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i 91 (165)
T 2c4o_A 17 GSMALKRIHKELNDLARDPPAQCSAGPVGD-----DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 91 (165)
T ss_dssp CHHHHHHHHHHHHHHHSSCCTTEEEEESSS-----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCC
T ss_pred CcHHHHHHHHHHHHHHhCCCCCEEEEEcCC-----CcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCC
Confidence 367899999999999999999999998776 999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 82 FHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 82 ~HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
|||||+.+ +|+|++||++||.+|+++|.+|+++||+|.+||++|
T Consensus 92 ~HPnV~~~G~ICl~iL~~~W~P~~ti~~vL~si~~ll~~pn~~~P~n~~aa~~~ 145 (165)
T 2c4o_A 92 YHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 145 (165)
T ss_dssp CBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHH
T ss_pred cCCcCCCCCeEeehhhcCCCCCcCcHHHHHHHHHHHHhCCCCCccccHHHHHHH
Confidence 99999987 799999999999999999999999999999999875
No 17
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00 E-value=9.2e-43 Score=241.89 Aligned_cols=120 Identities=37% Similarity=0.704 Sum_probs=113.5
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCc
Q psy90 2 SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL 81 (125)
Q Consensus 2 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i 81 (125)
|+.+.+||++|+++++++++.|+++.+.++. |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++
T Consensus 1 a~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~----nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i 76 (164)
T 3h8k_A 1 AGTALKRLMAEYKQLTLNPPEGIVAGPMNEE----NFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEM 76 (164)
T ss_dssp CCHHHHHHHHHHHHHHHSCCTTEEEEESSTT----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCC
T ss_pred CcHHHHHHHHHHHHHHhCCCCCEEEEECCCC----CccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCC
Confidence 4678999999999999999999999887643 899999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC-----------------------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 82 FHPNVYPS-----------------------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 82 ~HPni~~~-----------------------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
|||||+.+ +|+|++||++||.+|+++|.+|++++|+|.+||++|
T Consensus 77 ~HPNV~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~pn~~~p~n~~aa~~~ 143 (164)
T 3h8k_A 77 FHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMW 143 (164)
T ss_dssp CCTTBCTTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHH
T ss_pred ccCCCCCCCcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHHcCCCCCCccCHHHHHHH
Confidence 99999865 399999999999999999999999999999999876
No 18
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1e-42 Score=242.78 Aligned_cols=119 Identities=32% Similarity=0.617 Sum_probs=113.9
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCc
Q psy90 2 SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL 81 (125)
Q Consensus 2 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i 81 (125)
|..+.+||++|+++++++++.|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|
T Consensus 2 s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~-----~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i 76 (169)
T 1yh2_A 2 SMQRASRLKRELHMLATEPPPGITCWQDKD-----QMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPI 76 (169)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTEEEEESSS-----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCC
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEeCCC-----chheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCC
Confidence 567899999999999999999999998876 999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC--------------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 82 FHPNVYPS--------------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 82 ~HPni~~~--------------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
|||||+.+ +|+|++||++||.+|+++|.+|++++|+|.+||++|
T Consensus 77 ~HPNv~~~G~iCl~iL~~~~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~ 134 (169)
T 1yh2_A 77 YHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEF 134 (169)
T ss_dssp CBTTBCTTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred ccccCCcCCeEecccccCCcccCCCCCCcHHHHHHHHHHHHhCCCCcchHhHHHHHHH
Confidence 99999866 599999999999999999999999999999999875
No 19
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00 E-value=3.2e-43 Score=240.85 Aligned_cols=116 Identities=34% Similarity=0.717 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCccCC
Q psy90 5 AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHP 84 (125)
Q Consensus 5 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HP 84 (125)
+.+||++|+++++++++.|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus 2 ~~~RL~kEl~~l~~~~~~~i~~~~~~~-----~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP 76 (149)
T 2r0j_A 2 IPRRITKETQNLANEPPPGIMAVPVPE-----NYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHP 76 (149)
T ss_dssp CCHHHHHHHHHHHHSCCTTEEEEEETT-----EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCC-----cccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccC
Confidence 468999999999999999999998776 999999999999999999999999999999999999999999999999
Q ss_pred CCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 85 NVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 85 ni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
||+.+ +|+|++||++||.+|+++|.+|+++||+|.+||++|
T Consensus 77 nv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~ 127 (149)
T 2r0j_A 77 NIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHF 127 (149)
T ss_dssp TBCTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSSCHHHHHH
T ss_pred CCCCCCEEechhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCchhHHHHHHH
Confidence 99987 799999999999999999999999999999999875
No 20
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00 E-value=5.5e-43 Score=239.70 Aligned_cols=117 Identities=28% Similarity=0.583 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCccCC
Q psy90 5 AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHP 84 (125)
Q Consensus 5 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HP 84 (125)
+.+||++|+++++++++.|+++.+.+++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus 2 ~~~RL~~El~~l~~~~~~~i~~~~~~~~----~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP 77 (149)
T 1fxt_A 2 RAKRIMKEIQAVKDDPAAHITLEFVSES----DIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHP 77 (149)
T ss_dssp CHHHHHHHHHHHHHCGGGCCEEEESSSS----CSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBT
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEECCCC----CceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccC
Confidence 5799999999999999999999987643 899999999999999999999999999999999999999999999999
Q ss_pred CCCC-C----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 85 NVYP-S----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 85 ni~~-~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
||+. + +|+|++|+++||.+|+++|.+|+++||+|.+||++|
T Consensus 78 ni~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~ 129 (149)
T 1fxt_A 78 NISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHY 129 (149)
T ss_dssp TBCSSSCCBCCHHHHTSCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHH
T ss_pred CCcCCCCeEeCCcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence 9997 4 799999999999999999999999999999999876
No 21
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00 E-value=1e-42 Score=250.71 Aligned_cols=119 Identities=36% Similarity=0.698 Sum_probs=114.0
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCc
Q psy90 2 SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL 81 (125)
Q Consensus 2 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i 81 (125)
++.+.+||++|+++++++++.|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|
T Consensus 21 ~s~a~~RL~kEl~~l~~~~~~gi~~~p~~~-----nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i 95 (216)
T 2pwq_A 21 GSKELLRLQKELKDIENENVQEIDAHIKDS-----NFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKI 95 (216)
T ss_dssp SCHHHHHHHHHHHHHHHSCTTTEEEEECSS-----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCC
T ss_pred cCHHHHHHHHHHHHHHhCCCCCEEEEEcCC-----ccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCC
Confidence 467899999999999999999999999876 999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC-C----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 82 FHPNVYP-S----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 82 ~HPni~~-~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
|||||+. + +|+|++||++||.+|+++|.+|+++||+|.+||++|
T Consensus 96 ~HPNI~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~dPln~eaa~~~ 150 (216)
T 2pwq_A 96 WHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMY 150 (216)
T ss_dssp CBTTBCTTTCBBCCHHHHHHCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred cCCCCcCCCCEEEchhhcccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence 9999984 3 699999999999999999999999999999999876
No 22
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00 E-value=6.8e-43 Score=249.57 Aligned_cols=120 Identities=31% Similarity=0.580 Sum_probs=112.9
Q ss_pred CChHHHHHHHHHHHHHHhCC---CCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEe
Q psy90 1 MSGIAIGRLSEERKGWRKDH---PFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKF 77 (125)
Q Consensus 1 ms~~~~~Rl~~E~~~l~~~~---~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f 77 (125)
||+.+.+||++|++++++++ +.|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|
T Consensus 2 Ms~~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~-----nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f 76 (201)
T 3k9o_A 2 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDE-----NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRF 76 (201)
T ss_dssp --CTTHHHHHHHHHHHHTCHHHHTTSEEEEECST-----TSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEE
T ss_pred CcHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCC-----CccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCcccc
Confidence 88999999999999999873 68999999877 99999999999999999999999999999999999999999
Q ss_pred cCCccCCCCCC-C----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 78 EPPLFHPNVYP-S----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 78 ~t~i~HPni~~-~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
.|+||||||+. + +|+|++||++||.+|+++|.+|+++||+|.+||++|
T Consensus 77 ~t~i~HPnv~~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~p~p~~p~n~~aa~~~ 135 (201)
T 3k9o_A 77 ITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQY 135 (201)
T ss_dssp SSCCCBTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred ccCcccCCCcCCCCeeeCcccccCCCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHH
Confidence 99999999995 3 899999999999999999999999999999999876
No 23
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00 E-value=1.8e-42 Score=242.14 Aligned_cols=120 Identities=31% Similarity=0.540 Sum_probs=99.9
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCc
Q psy90 2 SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL 81 (125)
Q Consensus 2 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i 81 (125)
++.+.+||+||+++|+++++.|+++.+.++. |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|
T Consensus 15 ~~~~~~rL~kEl~~l~~~~~~gi~~~p~~~~----nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i 90 (172)
T 2awf_A 15 VPRGSLLLRRQLAELNKNPVEGFSAGLIDDN----DLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI 90 (172)
T ss_dssp CCTTHHHHHHHHHHHHHSCCTTEEEEESSTT----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCC
T ss_pred hHHHHHHHHHHHHHHHhCCCCCEEEEECCCc----cccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCC
Confidence 3578999999999999999999999987532 999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC-----------------------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 82 FHPNVYPS-----------------------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 82 ~HPni~~~-----------------------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
|||||+.+ +|+|++||++||.+|+++|.+|++++|+|.|||++|
T Consensus 91 ~HPNV~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~p~n~~aa~~~ 157 (172)
T 2awf_A 91 WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEW 157 (172)
T ss_dssp CCTTBCTTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC--------------
T ss_pred ccCCCCCCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHHHCcCCCCccCHHHHHHH
Confidence 99999875 399999999999999999999999999999999986
No 24
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00 E-value=4.7e-43 Score=241.44 Aligned_cols=118 Identities=32% Similarity=0.633 Sum_probs=112.9
Q ss_pred hHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCcc
Q psy90 3 GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLF 82 (125)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~ 82 (125)
+.+.+||++|+++++++++.|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|
T Consensus 4 ~~~~~RL~kE~~~l~~~~~~~i~~~~~~~-----~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 78 (155)
T 1jat_A 4 ASLPKRIIKETEKLVSDPVPGITAEPHDD-----NLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIY 78 (155)
T ss_dssp CSCCHHHHHHHHHHHHSCCTTEEEEEETT-----EEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCC
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEECCC-----chhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccc
Confidence 45789999999999999999999998876 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 83 HPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 83 HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
||||+.+ +|+|+++|++||.+|+++|.+|+++||+|.+||++|
T Consensus 79 HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~ 131 (155)
T 1jat_A 79 HPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDW 131 (155)
T ss_dssp BTTBCTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHH
T ss_pred cCCCCCCCEEEchhhccCCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence 9999966 799999999999999999999999999999999875
No 25
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00 E-value=4.9e-42 Score=241.99 Aligned_cols=118 Identities=36% Similarity=0.678 Sum_probs=111.9
Q ss_pred hHHHHHHHHHHHHHHhCCCCCeEEee-cCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCc
Q psy90 3 GIAIGRLSEERKGWRKDHPFGFVAKP-AKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL 81 (125)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i 81 (125)
+.+.+||++|+++++++++.|+++.+ .++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++
T Consensus 6 ~~a~kRL~kEl~~l~~~~~~gi~~~~~~~~-----nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i 80 (183)
T 3rz3_A 6 PSSQKALLLELKGLQEEPVEGFRVTLVDEG-----DLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKM 80 (183)
T ss_dssp CHHHHHHHHHHHHHHHSCCTTEEEEECTTC-----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCC
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEecCcc-----chhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCC
Confidence 57899999999999999999999984 444 999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC-----------------------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 82 FHPNVYPS-----------------------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 82 ~HPni~~~-----------------------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
|||||+.+ +|+|++||++||.+|+++|.+|++++|+|.|||++|
T Consensus 81 ~HPnV~~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~ 147 (183)
T 3rz3_A 81 WHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMY 147 (183)
T ss_dssp CCTTBCTTSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHH
T ss_pred ccCCCCCCCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence 99999974 499999999999999999999999999999999875
No 26
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=100.00 E-value=4.1e-42 Score=236.81 Aligned_cols=121 Identities=27% Similarity=0.428 Sum_probs=112.3
Q ss_pred hHHHHHHHHHHHHHHhC-CCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCc
Q psy90 3 GIAIGRLSEERKGWRKD-HPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL 81 (125)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~-~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i 81 (125)
..+.+||++|+++++++ ++.|+++.+..+.|. |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|
T Consensus 20 ~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~--nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i 97 (156)
T 2q0v_A 20 VPRSFRLLDELERGQKGNVSEGVSFGLESADDI--TLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKI 97 (156)
T ss_dssp CCHHHHHHHHHHHHHCC-CCTTEEEEESSTTCT--TCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCC
T ss_pred chHHHHHHHHHHHHHhCCCCCCeEEEECCCccc--cceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEccc
Confidence 45789999999999998 788999988643221 799999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC------------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 82 FHPNVYPS------------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 82 ~HPni~~~------------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
|||||+.+ +|+|++||++||.+|+++|.+|++++|+|.+||++|
T Consensus 98 ~HPNV~~~G~icisCL~iL~~WsP~~ti~~vL~sI~~ll~~Pn~~~p~n~~aa~~y 153 (156)
T 2q0v_A 98 EMSCVDNCGRVIKNNLHILKNWNRNYTIETILISLRQEMLSSANKRLPQPNEGEVY 153 (156)
T ss_dssp CCTTBCTTSBBCGGGSHHHHTCCTTCCHHHHHHHHHHHTTSTTTTTCCCCCTTCBC
T ss_pred ccCCCccCCeEehhhcccccCCCCcCcHHHHHHHHHHHHhCCCCCCcCChHHHHHh
Confidence 99999876 799999999999999999999999999999999987
No 27
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=100.00 E-value=1.1e-42 Score=235.55 Aligned_cols=123 Identities=28% Similarity=0.404 Sum_probs=109.6
Q ss_pred CCh-HHHHHHHHHHHHHHhC-CCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEec
Q psy90 1 MSG-IAIGRLSEERKGWRKD-HPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFE 78 (125)
Q Consensus 1 ms~-~~~~Rl~~E~~~l~~~-~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~ 78 (125)
||. .+.+||+||+++++++ ++.|+++.+.+++|. |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.
T Consensus 2 m~~~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~--nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~ 79 (138)
T 1jat_B 2 MSKVPRNFRLLEELEKGEKGFGPESCSYGLADSDDI--TMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFI 79 (138)
T ss_dssp -CCCCHHHHHHHHHHHHHC----CCEEEEESSTTCT--TCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEES
T ss_pred cchHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCC--cceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEE
Confidence 664 4668999999999998 788999988643221 699999999999999999999999999999999999999999
Q ss_pred CCccCCCCCCC------------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 79 PPLFHPNVYPS------------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 79 t~i~HPni~~~------------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
|+||||||+.+ +|+|++|+++||.+|+++|.+|++++|+|.+||++|
T Consensus 80 t~i~HPnv~~~~G~i~~cL~~l~~W~p~~~i~~vl~~i~~ll~~pn~~~p~~~~~~~~y 138 (138)
T 1jat_B 80 SKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF 138 (138)
T ss_dssp BCCCCTTBCTTTCBBCTTSHHHHTCCTTCCHHHHHHHHHHHHTSHHHHTSCCCCTTCBC
T ss_pred cccccCCEeCCCCEEeeecccCCCCCCcCcHHHHHHHHHHHHcCCCCCCCCCcchhhcC
Confidence 99999999863 799999999999999999999999999999999987
No 28
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00 E-value=1.2e-41 Score=241.76 Aligned_cols=118 Identities=32% Similarity=0.616 Sum_probs=113.4
Q ss_pred hHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCcc
Q psy90 3 GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLF 82 (125)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~ 82 (125)
+.+.+||++|+++|+++++.|+++.+.++ |+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+||
T Consensus 47 s~a~~RL~kEl~~l~~~~~~gi~~~p~~~-----nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~ 121 (194)
T 3bzh_A 47 STSAKRIQKELADITLDPPPNCSAGPKGD-----NIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIY 121 (194)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEEESSS-----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC
T ss_pred cHHHHHHHHHHHHHHhCCCCCceeecccC-----ccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCc
Confidence 45789999999999999999999998876 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 83 HPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 83 HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
||||+.+ +|+|+++|.+||.+|+++|.+|++++|+|.+||++|
T Consensus 122 HPNV~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~~aa~l~ 174 (194)
T 3bzh_A 122 HCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQY 174 (194)
T ss_dssp BTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred cceECCCCceechhhhccCCCcCcHHHHHHHHHHHHhCCCCccchhHHHHHHH
Confidence 9999976 799999999999999999999999999999999876
No 29
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=5.4e-42 Score=243.30 Aligned_cols=118 Identities=34% Similarity=0.650 Sum_probs=109.1
Q ss_pred hHHHHHHHHHHHHHHhCCC-------------CCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCC
Q psy90 3 GIAIGRLSEERKGWRKDHP-------------FGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYP 69 (125)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~~~-------------~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP 69 (125)
+.+.+||++|+++++++++ .|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||
T Consensus 31 ~~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~-----nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP 105 (193)
T 2f4z_A 31 PREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGG-----DIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYP 105 (193)
T ss_dssp -CHHHHHHHHHHHHHHC----------------CEEEEEETT-----EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTT
T ss_pred CHHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCC-----CcceEEEEEeCCCCCCcCCCEEEEEEECCCcCC
Confidence 3578999999999999887 7999998876 999999999999999999999999999999999
Q ss_pred CCCCeeEecCCccCCCCCC-C----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 70 STPPKCKFEPPLFHPNVYP-S----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 70 ~~pP~v~f~t~i~HPni~~-~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
++||+|+|.|+||||||+. + +|+|++||++||.+|+++|.+|++++|+|.+||++|
T Consensus 106 ~~PP~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pnp~~P~n~~aa~l~ 172 (193)
T 2f4z_A 106 YNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMM 172 (193)
T ss_dssp TSCCEEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred CCCCeEEEecCCccCCCcCCCCEEECccccccCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence 9999999999999999994 3 699999999999999999999999999999999986
No 30
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00 E-value=1.4e-41 Score=249.56 Aligned_cols=120 Identities=31% Similarity=0.578 Sum_probs=114.4
Q ss_pred CChHHHHHHHHHHHHHHhC---CCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEe
Q psy90 1 MSGIAIGRLSEERKGWRKD---HPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKF 77 (125)
Q Consensus 1 ms~~~~~Rl~~E~~~l~~~---~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f 77 (125)
||+.+.+||++|+++|+++ ++.|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|
T Consensus 54 Ms~~a~~RL~kEl~~l~~~~~~~~~gi~v~p~~d-----nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F 128 (253)
T 3e46_A 54 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDE-----NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRF 128 (253)
T ss_dssp CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECST-----TSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEE
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCC-----cccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeee
Confidence 7889999999999999987 468999999877 99999999999999999999999999999999999999999
Q ss_pred cCCccCCCCCC-C----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 78 EPPLFHPNVYP-S----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 78 ~t~i~HPni~~-~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
.|+||||||+. + +|+|++||++||.+|+++|.+|+++||+|.|||++|
T Consensus 129 ~T~i~HPNV~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~eaa~l~ 187 (253)
T 3e46_A 129 ITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQY 187 (253)
T ss_dssp SSCCCBTTBCTTTCBBCCGGGTTCCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred cCCCccCCccCCCCeeecccccCCCCCCCCHHHHHHHHHHHhcCCCCCChhhHHHHHHH
Confidence 99999999995 3 899999999999999999999999999999999876
No 31
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=100.00 E-value=2.3e-41 Score=236.45 Aligned_cols=120 Identities=27% Similarity=0.513 Sum_probs=109.0
Q ss_pred CChHHHHHHHHHHHHHHh-C-C------CC---CeEEee-cCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCC
Q psy90 1 MSGIAIGRLSEERKGWRK-D-H------PF---GFVAKP-AKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDY 68 (125)
Q Consensus 1 ms~~~~~Rl~~E~~~l~~-~-~------~~---~~~~~~-~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~y 68 (125)
||+.+.+||++|++++++ . + +. ++.+.+ .++ |+++|+++|.||++|||+||.|+++|.||++|
T Consensus 3 Ms~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~-----nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~Y 77 (172)
T 2y9m_A 3 MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDET-----DLSKWEAIISGPSDTPYENHQFRILIEVPSSY 77 (172)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTT-----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTT
T ss_pred CcHHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCC-----chhEEEEEEECCCCCcccCCEEEEEEECCCcC
Confidence 888999999999999998 5 3 33 466677 444 99999999999999999999999999999999
Q ss_pred CCCCCeeEecC-CccCCCCC-CC-----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 69 PSTPPKCKFEP-PLFHPNVY-PS-----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 69 P~~pP~v~f~t-~i~HPni~-~~-----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
|++||+|+|.| +||||||+ .+ +|+|++||++||.+|+++|.+|+++||+|.|||++|
T Consensus 78 P~~PP~v~f~t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~ 147 (172)
T 2y9m_A 78 PMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNII 147 (172)
T ss_dssp TTSCCEEEECTTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHH
T ss_pred CCCCCEEEEeeCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHH
Confidence 99999999999 99999995 43 799999999999999999999999999999999976
No 32
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=100.00 E-value=3.1e-41 Score=232.31 Aligned_cols=116 Identities=28% Similarity=0.570 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCeEE-eecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCcc
Q psy90 4 IAIGRLSEERKGWRKDHPFGFVA-KPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLF 82 (125)
Q Consensus 4 ~~~~Rl~~E~~~l~~~~~~~~~~-~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~ 82 (125)
.+.+||++|+++++++++.|+++ .+.++ |+++|+++|. |++|||+||.|+++|.||++||++||+|+|.|++|
T Consensus 4 ~~~~RL~kEl~~l~~~~~~~i~~~~~~~~-----~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 77 (155)
T 1wzv_A 4 MASMRVVKELEDLQKKPPPYLRNLSSDDA-----NVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIY 77 (155)
T ss_dssp -CHHHHHHHHHHHHHSCCTTEEEEEECSS-----CTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred hHHHHHHHHHHHHHhCCCCCEEEEecCCC-----chheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCc
Confidence 47899999999999999999999 66655 9999999999 99999999999999999999999999999999999
Q ss_pred CCCCCCC-----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 83 HPNVYPS-----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 83 HPni~~~-----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
||||+.+ +|+|+++|++||.+|+++|.+|++++|+|.+||++|
T Consensus 78 HPnV~~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~ 131 (155)
T 1wzv_A 78 HPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLL 131 (155)
T ss_dssp BTTBCTTCBCCCGGGCTTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHH
T ss_pred cCcCCCCCeEeecCCCccCCCCCCcHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Confidence 9999875 799999999999999999999999999999999876
No 33
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00 E-value=6.5e-42 Score=246.32 Aligned_cols=118 Identities=28% Similarity=0.573 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCccC
Q psy90 4 IAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFH 83 (125)
Q Consensus 4 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~H 83 (125)
.+.+||++|+++++++++.|+++.+.+++ ++++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||
T Consensus 2 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~~----~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~H 77 (215)
T 1tte_A 2 SRAKRIMKEIQAVKDDPAAHITLEFVSES----DIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYH 77 (215)
T ss_dssp TTHHHHHHHHHHHHTTTCTTCEECCCSSS----SCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCC
T ss_pred hHHHHHHHHHHHHHhCCCCCEEEEECCCc----cccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCcc
Confidence 47899999999999999999999987652 56799999999999999999999999999999999999999999999
Q ss_pred CCCCC-C----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 84 PNVYP-S----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 84 Pni~~-~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
|||+. + +|+|++||++||.+|+++|.+|++++|+|.+||++|
T Consensus 78 PNI~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~~Pln~eaa~~~ 130 (215)
T 1tte_A 78 PNISSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHY 130 (215)
T ss_dssp SSSCSSSSCCCSSTTTCCSCTTCCHHHHHHHHHHHHTSCCCSSCSCHHHHHHH
T ss_pred CcCcCCCCEEECccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHH
Confidence 99998 4 799999999999999999999999999999999876
No 34
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=9.2e-41 Score=231.03 Aligned_cols=115 Identities=30% Similarity=0.540 Sum_probs=108.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCCeEEe-ecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCc
Q psy90 3 GIAIGRLSEERKGWRKDHPFGFVAK-PAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL 81 (125)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~~~~~~~~~-~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i 81 (125)
+.+.+||++|++++ ++++|+++. +.++ |+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++
T Consensus 5 ~~~~~RL~kEl~~l--~~~~~~~~~~~~~~-----~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i 76 (160)
T 1y8x_A 5 SAAQLRIQKDINEL--NLPKTCDISFSDPD-----DLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMV 76 (160)
T ss_dssp CHHHHHHHHHHHTC--CCCTTEEEECSSTT-----CTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCC
T ss_pred cHHHHHHHHHHHhc--CCCCCeEEEeccCC-----ccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCC
Confidence 46899999999999 567899987 5555 999999998 99999999999999999999999999999999999
Q ss_pred cCCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 82 FHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 82 ~HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
|||||+.+ +|+|++||++||.+|+++|.+|++++|+|.+||++|
T Consensus 77 ~HPnv~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~Pn~~~p~n~~aa~~~ 130 (160)
T 1y8x_A 77 YHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVL 130 (160)
T ss_dssp CBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHH
T ss_pred ccCcCCCCCeEEcccchhhccCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHH
Confidence 99999987 799999999999999999999999999999999875
No 35
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=100.00 E-value=2.2e-40 Score=230.50 Aligned_cols=118 Identities=21% Similarity=0.399 Sum_probs=110.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCcc
Q psy90 3 GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLF 82 (125)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~ 82 (125)
+.+.+||++|+++++++++.|+++.+.+++ |++.|+++| ||++|||+||.|+++|.||++||++||+|+|.|++|
T Consensus 13 s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~----~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~ 87 (167)
T 3fn1_B 13 SVRDKLLVKEVAELEANLPCTCKVHFPDPN----KLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIW 87 (167)
T ss_dssp CHHHHHHHHHHHHHGGGSCTTEEEECSSSS----CTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCC
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEeCCCC----cceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCcc
Confidence 568899999999999999999999865432 899999999 899999999999999999999999999999999999
Q ss_pred CCCCCCC----------------CCCCcCCHHHHHHHHHHhhcC-CCCCChhcHHHHhhC
Q psy90 83 HPNVYPS----------------DWKPAITIKQILLGIQDLLNE-PNIKDPAQAEAYTIY 125 (125)
Q Consensus 83 HPni~~~----------------~W~p~~tl~~vl~~i~~ll~~-p~~~~p~n~~aa~~y 125 (125)
||||+.+ +|+|++||++||.+|+++|.+ |++++|+|.|||++|
T Consensus 88 HPnv~~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll~~~pn~~~p~n~eaa~~~ 147 (167)
T 3fn1_B 88 HPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHH 147 (167)
T ss_dssp CSSBCTTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTTTTTCCSSSCSCHHHHHHH
T ss_pred cCCCCCCCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHHcCCCCCCcchhHHHHHHH
Confidence 9999965 399999999999999999999 799999999999876
No 36
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.8e-40 Score=233.36 Aligned_cols=116 Identities=30% Similarity=0.538 Sum_probs=108.8
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCeEEe-ecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCC
Q psy90 2 SGIAIGRLSEERKGWRKDHPFGFVAK-PAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPP 80 (125)
Q Consensus 2 s~~~~~Rl~~E~~~l~~~~~~~~~~~-~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~ 80 (125)
++.+.+||++|++++ ++++|+++. +.++ |+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus 24 ~~~~~~RL~kEl~~l--~~~~~i~~~~p~~~-----nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~ 95 (180)
T 2nvu_C 24 ASAAQLRIQKDINEL--NLPKTCDISFSDPD-----DLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETM 95 (180)
T ss_dssp CCHHHHHHHHHHHTC--CCCTTEEEECSSTT-----CTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSC
T ss_pred ccHHHHHHHHHHHhc--CCCCCeEEEecccc-----cccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceecc
Confidence 457899999999999 577899987 5555 999999998 9999999999999999999999999999999999
Q ss_pred ccCCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 81 LFHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 81 i~HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
||||||+.+ +|+|++||++||.+|+++|.+|++++|+|.+||++|
T Consensus 96 i~HPNV~~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~ 150 (180)
T 2nvu_C 96 VYHPNIDLEGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVL 150 (180)
T ss_dssp CCBTTBCTTSBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHH
T ss_pred CccCCCCCCCcEEcccccccCCCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHH
Confidence 999999977 799999999999999999999999999999999876
No 37
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=100.00 E-value=6.3e-40 Score=226.57 Aligned_cols=119 Identities=25% Similarity=0.353 Sum_probs=107.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCC-eEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCc
Q psy90 3 GIAIGRLSEERKGWRKDHPFG-FVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL 81 (125)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~~~~~-~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i 81 (125)
..+.+||+||++++++++++| +++.+.+++| .|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|
T Consensus 24 ~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d--~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i 101 (160)
T 2a4d_A 24 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDED--MTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKI 101 (160)
T ss_dssp HHHHHHHHHHHHHHHSCCTTSSEEEEESSTTC--TTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCC
T ss_pred chHHHHHHHHHHHHHhCCCCCcEEEEecCCcc--ccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCc
Confidence 457899999999999999888 7777643321 1489999999999999999999999999999999999999999999
Q ss_pred cCCCCCC-C------------CCCCcCCHHHHHHHHHHhhc-CCCCCChhcHHHHh
Q psy90 82 FHPNVYP-S------------DWKPAITIKQILLGIQDLLN-EPNIKDPAQAEAYT 123 (125)
Q Consensus 82 ~HPni~~-~------------~W~p~~tl~~vl~~i~~ll~-~p~~~~p~n~~aa~ 123 (125)
|||||+. + +|+|++||++||.+|+++|. +||+++|+|.|||.
T Consensus 102 ~HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa~ 157 (160)
T 2a4d_A 102 NMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQC 157 (160)
T ss_dssp CCTTBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCTTCB
T ss_pred eeCCEECCCCEEehhhcCCccCCCccCcHHHHHHHHHHHHccCCCCCCCCChhhcc
Confidence 9999983 3 79999999999999999996 69999999999984
No 38
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=100.00 E-value=5.8e-41 Score=230.32 Aligned_cols=114 Identities=25% Similarity=0.493 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCccC
Q psy90 4 IAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFH 83 (125)
Q Consensus 4 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~H 83 (125)
.+.+||+||++++++. |+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus 2 sa~~Rl~kEl~~l~~~---~~~v~~~~~-----~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 73 (152)
T 2onu_A 2 TSLTRKQCDFTKLIMA---GYDLELNNG-----STQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLH 73 (152)
T ss_dssp -CCCHHHHTHHHHHHH---TCCEEEETT-----EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCC
T ss_pred hHHHHHHHHHHhcCcC---CCEEEEccC-----ccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCcc
Confidence 3679999999999875 677887765 99999999999999999999999999999999999999999999999
Q ss_pred CCCCC-C----------CCCCcCCHHHHHHH-HHHhhcCCCCCChhcHHHHhhC
Q psy90 84 PNVYP-S----------DWKPAITIKQILLG-IQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 84 Pni~~-~----------~W~p~~tl~~vl~~-i~~ll~~p~~~~p~n~~aa~~y 125 (125)
|||+. + +|+|++++++||.+ |++||.+|++++|+|.+||++|
T Consensus 74 Pni~~~~G~iCl~il~~~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~n~~aa~~~ 127 (152)
T 2onu_A 74 PNVDEASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLL 127 (152)
T ss_dssp TTBCTTTCBBCHHHHHHHCCTTCCHHHHHHTHHHHHHHSCCCSSCSSHHHHHHH
T ss_pred CcCcCcCCeEecccccccCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence 99995 3 69999999999998 6899999999999999999875
No 39
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=100.00 E-value=2.9e-40 Score=227.27 Aligned_cols=116 Identities=29% Similarity=0.609 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCccCC
Q psy90 5 AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHP 84 (125)
Q Consensus 5 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HP 84 (125)
+.+||++|+++++++++.|+++.+.++. |+++|+++|. |++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus 3 a~~RL~kEl~~l~~~~~~~~~~~~~~~~----~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP 77 (154)
T 1c4z_D 3 ASRRLMKELEEIRKCGMKNFRNIQVDEA----NLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHP 77 (154)
T ss_dssp -CTTHHHHHTTCSSSCCSSCEEECSSCS----SSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEeeCCCC----chheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccc
Confidence 5799999999999999999986554321 9999999998 9999999999999999999999999999999999999
Q ss_pred CCCCC-----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 85 NVYPS-----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 85 ni~~~-----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
||+.+ +|+|++|+++||.+|+++|.+|++++|+|.+||++|
T Consensus 78 nv~~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~ 129 (154)
T 1c4z_D 78 NIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEY 129 (154)
T ss_dssp TBCTTCBBCCTTTSSSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHH
T ss_pred cCCCCCEEECCCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCchhhHHHHHHH
Confidence 99976 699999999999999999999999999999999875
No 40
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.7e-40 Score=233.03 Aligned_cols=116 Identities=28% Similarity=0.482 Sum_probs=105.9
Q ss_pred CCh--HHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEec
Q psy90 1 MSG--IAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFE 78 (125)
Q Consensus 1 ms~--~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~ 78 (125)
||+ .+.+||++|++++++ .|+++.+. + |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.
T Consensus 20 ms~~~~a~~RL~kEl~~l~~---~g~~v~~~-d-----dl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~ 90 (179)
T 2z5d_A 20 MSSPSPGKRRMDTDVIKLIE---SKHEVTIL-G-----GLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFM 90 (179)
T ss_dssp ---CCHHHHHHHHHHHHHHH---SSSCEEEE-E-----ETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEES
T ss_pred CCCchHHHHHHHHHHHhcCc---CCCEEEEC-C-----CCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEe
Confidence 554 488999999999985 46777776 4 789999999999999999999999999999999999999999
Q ss_pred CCccCCCCCC-C----------CCCCcCCHHHHHHH-HHHhhcCCCCCChhcHHHHhhC
Q psy90 79 PPLFHPNVYP-S----------DWKPAITIKQILLG-IQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 79 t~i~HPni~~-~----------~W~p~~tl~~vl~~-i~~ll~~p~~~~p~n~~aa~~y 125 (125)
|+||||||+. + +|+|+++|++||.+ |+++|.+|++++|+|.+||++|
T Consensus 91 t~i~HPNV~~~~G~ICL~iL~~~WsP~~ti~~iL~s~I~~Ll~~Pn~~~p~n~eaa~~~ 149 (179)
T 2z5d_A 91 NKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMY 149 (179)
T ss_dssp SCCCBTTBCTTTCBBCHHHHHHHCCTTCCTTHHHHTHHHHHHHSCCCSSCSCHHHHHHH
T ss_pred cCCccCcCCCCCCeEeccccccCCCCCCCHHHHHHHHHHHHHhCCCCCCccCHHHHHHH
Confidence 9999999998 4 79999999999999 9999999999999999999876
No 41
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=100.00 E-value=6.1e-40 Score=228.34 Aligned_cols=120 Identities=20% Similarity=0.427 Sum_probs=111.1
Q ss_pred CChHHHHHHHHHHHHHHhCC------------CCCeEEeecCCCCCCCCcceeEEEecCCCCCCCC--CCEEEEEEEeCC
Q psy90 1 MSGIAIGRLSEERKGWRKDH------------PFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWE--SGSYKLRMIFKD 66 (125)
Q Consensus 1 ms~~~~~Rl~~E~~~l~~~~------------~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~--gg~f~~~i~fp~ 66 (125)
||+.+.+||++|++++++++ ..++.+.+.++ |+++|+++|.||++|||+ ||.|+++|.||+
T Consensus 5 Ms~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~-----nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~ 79 (167)
T 4ds2_A 5 MKNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTD-----TIYNWILKVKAPADSVYGGAGNTYQLSVLFSD 79 (167)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEES-----STTEEEEEEECCTTSGGGTTCCEEEEEEECCT
T ss_pred ccHHHHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCC-----cccEEEEEEECCCCCCccCCCCEEEEEEECCC
Confidence 88889999999999999987 67899988877 999999999999999999 999999999999
Q ss_pred CCCCCCCeeEecCCccCCCCCCC----------CCCCcCCHHHHHH-HHHHhhcC--CCCCChhcHHHHhhC
Q psy90 67 DYPSTPPKCKFEPPLFHPNVYPS----------DWKPAITIKQILL-GIQDLLNE--PNIKDPAQAEAYTIY 125 (125)
Q Consensus 67 ~yP~~pP~v~f~t~i~HPni~~~----------~W~p~~tl~~vl~-~i~~ll~~--p~~~~p~n~~aa~~y 125 (125)
+||++||+|+|.|++|||||+.+ +|+|+++++++|+ .|++++.. |++++|+|.|||++|
T Consensus 80 ~YP~~pP~v~f~t~i~HPnv~~~G~iCl~il~~~W~p~~~i~~vll~~l~~l~~~~~pn~~~p~n~eaa~l~ 151 (167)
T 4ds2_A 80 DYPHEPPTVRFVTPVYSPLVTGEGGICDRMVNDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYL 151 (167)
T ss_dssp TTTTSCCEEEESSCCCCSSCCTTSCCCTHHHHTTCCTTSCHHHHHHHHHHHHHTSTTSCCSCCCCHHHHHHH
T ss_pred CCCCCCCEEEEeCCcccccCCCCCEEEcccCcCCCCCCCChHHHHHHHHHHHHhcCCCCCcchHhHHHHHHH
Confidence 99999999999999999999976 8999999999764 67777775 899999999999875
No 42
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=100.00 E-value=1.6e-39 Score=252.13 Aligned_cols=119 Identities=34% Similarity=0.737 Sum_probs=114.8
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCc
Q psy90 2 SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL 81 (125)
Q Consensus 2 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i 81 (125)
++.|.+||+||++++++++++|+++.|.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++
T Consensus 1 ~s~a~~RL~kEl~~l~~~~~~~~~~~p~~~-----nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i 75 (399)
T 4ddg_A 1 GAMALKRIHKELNDLARDPPAQCSAGPVGD-----DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 75 (399)
T ss_dssp CHHHHHHHHHHHHHHHHSCCSSEEEEEETT-----EEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCC
T ss_pred CcHHHHHHHHHHHHHHhCCCCCEEEEEcCC-----cceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccc
Confidence 357899999999999999999999999876 999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 82 FHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 82 ~HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
|||||+.+ +|+|++|+++||.+|+++|.+|+++||+|.+||++|
T Consensus 76 ~HPnv~~~G~iCl~il~~~W~p~~~i~~vL~~i~~ll~~pnp~~p~n~~aa~~~ 129 (399)
T 4ddg_A 76 YHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 129 (399)
T ss_dssp CCTTBCTTCBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHH
T ss_pred cccccCCCCeEeCcccccCCCccccHHHHHHHHHHHHcCCCCCchhhHHHHHHH
Confidence 99999977 899999999999999999999999999999999875
No 43
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=100.00 E-value=4.2e-39 Score=228.11 Aligned_cols=115 Identities=27% Similarity=0.465 Sum_probs=107.9
Q ss_pred hHHHHHHHHHHHHHHhCCCCCeEEe----ecCCCCCCCCcc---eeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCee
Q psy90 3 GIAIGRLSEERKGWRKDHPFGFVAK----PAKNPDGSLNLM---NWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKC 75 (125)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~~~~~~~~~----~~~~~~~~~~~~---~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v 75 (125)
+.+.+||++|+++++ .++|+++. +.++ |++ +|+++|. |++|||+||.|+++|.||++||++||+|
T Consensus 28 s~a~~RL~kEl~~l~--~~~~i~~~~~~~p~~~-----nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v 99 (190)
T 3o2u_A 28 SAARIRLKRDLDSLD--LPPTVTLNVITSPDSA-----DRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKV 99 (190)
T ss_dssp CHHHHHHHHHHHTCC--CCTTEEEEEEECTTCC-----CTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEE
T ss_pred cHHHHHHHHHHHhcc--CCCCEEEEecCCCCCc-----cCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCcee
Confidence 578999999999998 67899987 5554 999 9999997 7889999999999999999999999999
Q ss_pred EecCCccCCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90 76 KFEPPLFHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 76 ~f~t~i~HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y 125 (125)
+|.|+||||||+.+ +|+|++|+++||.+|+++|.+|+++||+|.+||++|
T Consensus 100 ~f~t~i~HPnV~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~pln~~aa~~~ 159 (190)
T 3o2u_A 100 VCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLL 159 (190)
T ss_dssp EECSCCCCTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHH
T ss_pred EEecCcccCCCCCCCeEechhccCCCCCCCCHHHHHHHHHHHHhCCCCCcchhHHHHHHH
Confidence 99999999999976 799999999999999999999999999999999876
No 44
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=100.00 E-value=7.7e-39 Score=213.37 Aligned_cols=107 Identities=29% Similarity=0.515 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCc-c
Q psy90 4 IAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL-F 82 (125)
Q Consensus 4 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i-~ 82 (125)
.+.+||++|+++++++++.|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ |
T Consensus 6 ~a~~RL~kEl~~l~~~~~~~~~~~~~~~-----~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~ 80 (125)
T 2fo3_A 6 NANYRIQKELHNFLNNPPINCTLDVHPN-----NIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPK 80 (125)
T ss_dssp ---CHHHHHHHHHHHSCCTTEEEEECTT-----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCC
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEeCcc-----hhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCC
Confidence 4789999999999999999999988765 999999999999999999999999999999999999999999997 9
Q ss_pred CCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCC
Q psy90 83 HPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKD 115 (125)
Q Consensus 83 HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~ 115 (125)
||||+.+ +|+|++|+++||.+|+++|.+|+.+.
T Consensus 81 HPnv~~~G~iCl~iL~~~W~P~~~i~~vl~si~~ll~~p~~~~ 123 (125)
T 2fo3_A 81 HTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISMLSSAKEKK 123 (125)
T ss_dssp BTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHC------
T ss_pred CCcCCCCCEEEchhcCCCCCCCCcHHHHHHHHHHHHhCccccc
Confidence 9999986 79999999999999999999998653
No 45
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=100.00 E-value=2e-39 Score=226.36 Aligned_cols=113 Identities=25% Similarity=0.437 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCccC
Q psy90 4 IAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFH 83 (125)
Q Consensus 4 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~H 83 (125)
.+.+||++|++++++++. ++ +.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||
T Consensus 12 ~~~~RL~~El~~l~~~~~-~v---~~~~-----~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~H 82 (171)
T 1yf9_A 12 RSNRRREMDYMRLCNSTR-KV---YPSD-----TVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILH 82 (171)
T ss_dssp -CCHHHHHHHHHHHSSSS-CE---EECS-----STTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCB
T ss_pred cHHHHHHHHHHHHHhCCC-CC---CCCC-----CceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCccc
Confidence 567999999999999874 33 2333 99999999999999999999999999999999999999999999999
Q ss_pred CCCCC-C----------CCCCcCCHHHHHHHH-HHhhcCCCCCChhcHHHHhhC
Q psy90 84 PNVYP-S----------DWKPAITIKQILLGI-QDLLNEPNIKDPAQAEAYTIY 125 (125)
Q Consensus 84 Pni~~-~----------~W~p~~tl~~vl~~i-~~ll~~p~~~~p~n~~aa~~y 125 (125)
|||+. + +|+|++||++||.+| ++||.+|++++|+|.+||++|
T Consensus 83 PNi~~~~G~iCl~iL~~~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~~aa~~~ 136 (171)
T 1yf9_A 83 PNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLL 136 (171)
T ss_dssp TTBCTTTCBBCHHHHHHHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHH
T ss_pred ccCcccCCeEeccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence 99995 4 799999999999997 799999999999999999875
No 46
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=100.00 E-value=3.3e-39 Score=225.00 Aligned_cols=118 Identities=25% Similarity=0.363 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHHhCCCCC-eEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCcc
Q psy90 4 IAIGRLSEERKGWRKDHPFG-FVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLF 82 (125)
Q Consensus 4 ~~~~Rl~~E~~~l~~~~~~~-~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~ 82 (125)
.+.+||++|+++++++++.| +++.+.+++| .|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus 35 p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d--~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~ 112 (170)
T 2hlw_A 35 PRNFRLLEELEEGQKGVGDGTVSWGLEDDED--MTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKIN 112 (170)
T ss_dssp CHHHHHHHHHHHHHHCCGGGCEEEEESSTTC--SSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCC
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEecCccc--ccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEecccc
Confidence 46899999999999998888 6777643321 14999999999999999999999999999999999999999999999
Q ss_pred CCCCC-CC------------CCCCcCCHHHHHHHHHHhhcC-CCCCChhcHHHHh
Q psy90 83 HPNVY-PS------------DWKPAITIKQILLGIQDLLNE-PNIKDPAQAEAYT 123 (125)
Q Consensus 83 HPni~-~~------------~W~p~~tl~~vl~~i~~ll~~-p~~~~p~n~~aa~ 123 (125)
||||+ .+ +|+|++||++||.+|+++|.+ ||+++|+|.|||.
T Consensus 113 HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa~ 167 (170)
T 2hlw_A 113 MNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQC 167 (170)
T ss_dssp CSSBCSSSCBBCTTTCHHHHTCCSSCCHHHHHHHHHHHHHSTTTSSSCCCSSCCB
T ss_pred cCCEeCCCCEEEhhhcCCCCCCCccCcHHHHHHHHHHHHccCCCCCCCCCccccc
Confidence 99998 33 799999999999999999985 9999999999983
No 47
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=1.2e-37 Score=210.25 Aligned_cols=105 Identities=27% Similarity=0.506 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCc-c
Q psy90 4 IAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL-F 82 (125)
Q Consensus 4 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i-~ 82 (125)
.+.+||++|+++++++++.|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ |
T Consensus 20 ~~~~RL~kEl~~l~~~~~~~~~~~~~~~-----nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~ 94 (136)
T 2h2y_A 20 NANYRIQKELNNFLKNPPINCTIDVHPS-----NIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPK 94 (136)
T ss_dssp SHHHHHHHHHHHHHHSCCTTEEEEECTT-----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCC
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEeccc-----cccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCC
Confidence 5789999999999999999999988765 999999999999999999999999999999999999999999997 9
Q ss_pred CCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCC
Q psy90 83 HPNVYPS----------DWKPAITIKQILLGIQDLLNEPNI 113 (125)
Q Consensus 83 HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~ 113 (125)
||||+.+ +|+|++|+++||.+|+++|.+|+.
T Consensus 95 HPnv~~~G~ICl~iL~~~WsP~~ti~~vL~si~sll~~p~~ 135 (136)
T 2h2y_A 95 HTHVYSNGDICLSVLGDDYNPSLSISGLILSIISMLSSAKE 135 (136)
T ss_dssp CTTBCTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHSSSCC
T ss_pred CCcCCCCCEEECccccCCCCCCCcHHHHHHHHHHHHhCcCc
Confidence 9999987 799999999999999999999974
No 48
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=4.5e-37 Score=207.38 Aligned_cols=103 Identities=29% Similarity=0.634 Sum_probs=95.2
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCeEEe--ecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEec
Q psy90 1 MSGIAIGRLSEERKGWRKDHPFGFVAK--PAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFE 78 (125)
Q Consensus 1 ms~~~~~Rl~~E~~~l~~~~~~~~~~~--~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~ 78 (125)
||+. .+||+||++++++++++|+++. +.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.
T Consensus 20 Ms~~-~~RL~kEl~~l~~~~~~gi~v~~~~~~~-----nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~ 93 (136)
T 2a7l_A 20 MASM-QKRLQKELLALQNDPPPGMTLNEKSVQN-----SITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFT 93 (136)
T ss_dssp GTTS-CHHHHHHHHHHHHSCCTTCCCCTTCCCC-----SCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEE
T ss_pred ccHH-HHHHHHHHHHHHhCCCCCEEEEEeeCcc-----ccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEe
Confidence 5553 4999999999999999999865 5544 999999999999999999999999999999999999999999
Q ss_pred CCcc--CCCCCCC----------CCCCcCCHHHHHHHHHHhhc
Q psy90 79 PPLF--HPNVYPS----------DWKPAITIKQILLGIQDLLN 109 (125)
Q Consensus 79 t~i~--HPni~~~----------~W~p~~tl~~vl~~i~~ll~ 109 (125)
|++| ||||+.+ +|+|++||++||.+|+++|.
T Consensus 94 T~i~~~HPNV~~~G~ICL~iL~~~WsP~~ti~~vL~sI~slL~ 136 (136)
T 2a7l_A 94 GENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS 136 (136)
T ss_dssp SSCCCCBTTBCTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHTC
T ss_pred CCCcCCCccCCCCCeEEchhcCCCCCCCCcHHHHHHHHHHHhC
Confidence 9999 9999977 79999999999999999984
No 49
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=100.00 E-value=5.4e-35 Score=220.29 Aligned_cols=116 Identities=28% Similarity=0.575 Sum_probs=105.7
Q ss_pred CChHHHHHHHHHHHHHHhCCCCC----eEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeE
Q psy90 1 MSGIAIGRLSEERKGWRKDHPFG----FVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCK 76 (125)
Q Consensus 1 ms~~~~~Rl~~E~~~l~~~~~~~----~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~ 76 (125)
||+.+.+||++|+++|+++++.| +.+.+.++ |++.|+++|.||++|||+||.|+|+|.||++||++||+|+
T Consensus 73 ~s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ed-----nl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~ 147 (323)
T 3ceg_A 73 NSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEE-----RLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVN 147 (323)
T ss_dssp CCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEESS-----CTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEE
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCcccceeecccCC-----CccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEE
Confidence 57789999999999999998775 44556665 9999999999999999999999999999999999999999
Q ss_pred ecCC-----ccCCCCCCC-----------------CCCCcC-CHHHHHHHHHHhhc--CCCCCChhcHHH
Q psy90 77 FEPP-----LFHPNVYPS-----------------DWKPAI-TIKQILLGIQDLLN--EPNIKDPAQAEA 121 (125)
Q Consensus 77 f~t~-----i~HPni~~~-----------------~W~p~~-tl~~vl~~i~~ll~--~p~~~~p~n~~a 121 (125)
|.|+ +|||||+.+ +|+|++ ||.+||.+|++||. +|++++|+|.+|
T Consensus 148 F~T~~g~~~ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~~~~Pn~~dP~~~~a 217 (323)
T 3ceg_A 148 LETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERS 217 (323)
T ss_dssp ECCSTTTTCCCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTSCSSGGGGSTTGGGG
T ss_pred EeccCCCcccccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHcCCCCCCCCccCHHH
Confidence 9998 999999875 499999 89999999999996 677799999987
No 50
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.7e-33 Score=197.85 Aligned_cols=106 Identities=26% Similarity=0.498 Sum_probs=97.4
Q ss_pred hHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCcc
Q psy90 3 GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLF 82 (125)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~ 82 (125)
+.+.+||++|+++|++++++|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus 13 ~~a~~RL~kEl~~l~~~~~~~i~~~p~~~-----nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~-- 85 (187)
T 2f4w_A 13 TTATQRLKQDYLRIKKDPVPYICAEPLPS-----NILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP-- 85 (187)
T ss_dssp -CHHHHHHHHHHHHHHSCCTTEEEEEETT-----EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcCC-----ccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--
Confidence 46889999999999999999999998876 99999999999999999999999999999999999999999999
Q ss_pred CCCCCCC-------------CCCCcCCHHHHHHHHHHhhcCCCCCC
Q psy90 83 HPNVYPS-------------DWKPAITIKQILLGIQDLLNEPNIKD 115 (125)
Q Consensus 83 HPni~~~-------------~W~p~~tl~~vl~~i~~ll~~p~~~~ 115 (125)
|||++.+ +|+|+++|.+||.+|+++|.+|+++.
T Consensus 86 ~~~~~~~G~ICL~iL~~~~~~W~P~~ti~~vL~si~sll~~p~p~~ 131 (187)
T 2f4w_A 86 NGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTL 131 (187)
T ss_dssp CSSBCTTSCBC----------CCTTCCHHHHHHHHHHHHHSCCCCT
T ss_pred CceeccCCeEeeeccccCccCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence 7776643 69999999999999999999999864
No 51
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=100.00 E-value=3.6e-34 Score=202.16 Aligned_cols=109 Identities=21% Similarity=0.369 Sum_probs=101.4
Q ss_pred CChHHHHHHHHHHHHHHhCC---CCCeEEeecCCCCCCCCcceeEEEecCC-CCCCCCC-----------CEEEEEEEeC
Q psy90 1 MSGIAIGRLSEERKGWRKDH---PFGFVAKPAKNPDGSLNLMNWECSIPGK-KGTPWES-----------GSYKLRMIFK 65 (125)
Q Consensus 1 ms~~~~~Rl~~E~~~l~~~~---~~~~~~~~~~~~~~~~~~~~w~~~i~Gp-~~t~y~g-----------g~f~~~i~fp 65 (125)
||..+.+||++|++++++++ +.++++.+.++ |+++|+++|.|| ++|||+| |.|+++|.||
T Consensus 24 ~s~~a~~RL~kEl~~l~~~~~~~~~~~~~~p~~d-----nl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp 98 (186)
T 1zuo_A 24 GSVQASDRLMKELRDIYRSQSYKTGIYSVELIND-----SLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFK 98 (186)
T ss_dssp CCHHHHHHHHHHHHHHHTSHHHHTTSEEEEEETT-----EEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECC
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEcCC-----ccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECC
Confidence 67889999999999999988 68899998876 999999999998 9999998 8999999999
Q ss_pred CCCCCCCCeeEecCCccCC-CCCCC-----------CCCCcCCHHHHHHHHHHhhcCCCCC
Q psy90 66 DDYPSTPPKCKFEPPLFHP-NVYPS-----------DWKPAITIKQILLGIQDLLNEPNIK 114 (125)
Q Consensus 66 ~~yP~~pP~v~f~t~i~HP-ni~~~-----------~W~p~~tl~~vl~~i~~ll~~p~~~ 114 (125)
++||++||+|+|.|++||| ||+.+ +|+|++||++||.+|+++|.+|+.+
T Consensus 99 ~~YP~~PP~V~f~tpi~hPnnV~~~G~ICL~iL~~~~WsP~~ti~~VL~sI~slL~~p~a~ 159 (186)
T 1zuo_A 99 DNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKAR 159 (186)
T ss_dssp TTTTSSCCEEEEEESCEESTTBCGGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHHHHTTCE
T ss_pred CCCCCCCCeEEEeCCccCCCccCCCCcEEeccCCCCCCCCcCcHHHHHHHHHHHHcCCChh
Confidence 9999999999999999999 58865 6999999999999999999998753
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.91 E-value=6.3e-26 Score=155.57 Aligned_cols=85 Identities=20% Similarity=0.338 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCC----------EEEEEEEeCCCCCCCCCee
Q psy90 6 IGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESG----------SYKLRMIFKDDYPSTPPKC 75 (125)
Q Consensus 6 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg----------~f~~~i~fp~~yP~~pP~v 75 (125)
.+||++|++.|++ ++.+..+ |++.|.+.+.||+||+|+|| .|.+++.||++||++||+|
T Consensus 34 ~~RL~eE~k~L~k------~v~p~k~-----n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV 102 (172)
T 2z6o_A 34 VQRLKEEYQSLIR------YVENNKN-----ADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEI 102 (172)
T ss_dssp HHHHHHHHHHHHH------HHHHHHH-----TTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCC
T ss_pred HHHHHHHHHHHHH------HhccCcc-----ccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCee
Confidence 9999999999998 3555555 99999999999999999999 9999999999999999999
Q ss_pred EecCC-ccCCCCCCC--------------CCCCcCCHHHHH
Q psy90 76 KFEPP-LFHPNVYPS--------------DWKPAITIKQIL 101 (125)
Q Consensus 76 ~f~t~-i~HPni~~~--------------~W~p~~tl~~vl 101 (125)
+|.++ ++|||||.+ .|+|+++|.++|
T Consensus 103 ~F~~~~~~hpnmY~~G~ICLdIL~kp~Ws~~~P~~~IahiL 143 (172)
T 2z6o_A 103 AVPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLM 143 (172)
T ss_dssp BCGGGTTTCSSBCTTSBBCCCTTHHHHHHHHTTSCCHHHHH
T ss_pred eeCCCCCCCCCCCCCCcEechhhccccccccCCccCHHHHH
Confidence 99998 999999998 344999999998
No 53
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.69 E-value=1e-16 Score=110.38 Aligned_cols=105 Identities=17% Similarity=0.174 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHhCCC---CCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCE---EEEEEEeCCCCCCCCCeeEecC
Q psy90 6 IGRLSEERKGWRKDHP---FGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGS---YKLRMIFKDDYPSTPPKCKFEP 79 (125)
Q Consensus 6 ~~Rl~~E~~~l~~~~~---~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~---f~~~i~fp~~yP~~pP~v~f~t 79 (125)
.+|..+|+.++.+.-+ +...+...++ ...++-+.+.|.-.++|+|+. |.+.|-||.+||++||.|.|.+
T Consensus 30 ~~~~~~dv~~~l~~yp~L~p~t~~yt~~d-----G~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p 104 (162)
T 3r3q_A 30 GRTTFHDSLALLDNFHSLRPRTRVFTHSD-----GTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINL 104 (162)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEEEECTT-----SCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECG
T ss_pred hhHHHHHHHHHHHhCCCCceeeeeEEcCC-----CChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEEC
Confidence 3677788888765432 1222333333 556677777777779999998 8899999999999999998865
Q ss_pred -------C---cc-CCCCCCC---------CCCC-cCCHHHHHHHHHHhhcCCCCCC
Q psy90 80 -------P---LF-HPNVYPS---------DWKP-AITIKQILLGIQDLLNEPNIKD 115 (125)
Q Consensus 80 -------~---i~-HPni~~~---------~W~p-~~tl~~vl~~i~~ll~~p~~~~ 115 (125)
+ |+ ||||+.+ +|++ +++|.+++.+|+++|.+|++|.
T Consensus 105 ~t~~m~~~~~~I~~hpnVD~~G~I~lpyL~~W~p~~s~L~~ll~~l~~lf~ep~~d~ 161 (162)
T 3r3q_A 105 ENFDMNTISSSLPIQEYIDSNGWIALPILHAWDPAAMNLIMVVQELMSLLHEPPQDQ 161 (162)
T ss_dssp GGCCTTTSCTTSTHHHHBCTTSBBCCGGGGSCCGGGCCHHHHHHHHHHTTSCCCCCC
T ss_pred CCccccccccccCCCCCCCCCCcEeCcccccCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence 1 77 9999988 8999 7899999999999999999875
No 54
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=99.46 E-value=3.4e-15 Score=100.53 Aligned_cols=75 Identities=19% Similarity=0.275 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCC----------EEEEEEEeCCCCCCCCC
Q psy90 4 IAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESG----------SYKLRMIFKDDYPSTPP 73 (125)
Q Consensus 4 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg----------~f~~~i~fp~~yP~~pP 73 (125)
....||..|++.|-+- +.-..+ +-..|...+.||+||+|.|+ .|+++++||.+||.+||
T Consensus 34 ~w~~RlkeEy~alI~y------v~~nK~-----~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPP 102 (168)
T 3kpa_A 34 KWTARLKEEYASLITY------VEHNKA-----SDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPP 102 (168)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHH-----TTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCC
T ss_pred HHHHHHHHHHHHHHHH------HHhccc-----ccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCC
Confidence 3578999999998631 111222 44569999999999999999 99999999999999999
Q ss_pred eeEecCC-ccCCCCCCC
Q psy90 74 KCKFEPP-LFHPNVYPS 89 (125)
Q Consensus 74 ~v~f~t~-i~HPni~~~ 89 (125)
+|+|.+. .+|||+|.+
T Consensus 103 eI~Fp~ldgkt~kmYr~ 119 (168)
T 3kpa_A 103 EIALPELEGKTVKMYRG 119 (168)
T ss_dssp CCBCGGGTTTCSSEETT
T ss_pred EeecccccCcCccccCC
Confidence 9999995 899999988
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.17 E-value=1e-10 Score=79.15 Aligned_cols=69 Identities=26% Similarity=0.589 Sum_probs=62.0
Q ss_pred CcceeEEEecCCCCCCCCCCEEEE--EEEeCCCCCCCCCeeEecCC------ccCCCCCCC---------CCCC-cCCHH
Q psy90 37 NLMNWECSIPGKKGTPWESGSYKL--RMIFKDDYPSTPPKCKFEPP------LFHPNVYPS---------DWKP-AITIK 98 (125)
Q Consensus 37 ~~~~w~~~i~Gp~~t~y~gg~f~~--~i~fp~~yP~~pP~v~f~t~------i~HPni~~~---------~W~p-~~tl~ 98 (125)
++..|.++|. .+|+|+.|.+ .|-||++||++||.| |.++ ..||||+.+ +|++ .++|.
T Consensus 52 ~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd~~G~i~lpyL~~W~~~~snL~ 126 (146)
T 3obq_A 52 ELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLL 126 (146)
T ss_dssp EEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBCTTCBBCCHHHHTCCTTTCCHH
T ss_pred eEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCCCCCCEecccccccCCCCCCHH
Confidence 8899999997 6799999995 889999999999999 7666 489999998 8988 89999
Q ss_pred HHHHHHHHhhcC
Q psy90 99 QILLGIQDLLNE 110 (125)
Q Consensus 99 ~vl~~i~~ll~~ 110 (125)
+++..++++|.+
T Consensus 127 ~ll~~l~~~F~~ 138 (146)
T 3obq_A 127 GLIQVMIVVFGD 138 (146)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999999874
No 56
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.87 E-value=0.0089 Score=38.56 Aligned_cols=68 Identities=15% Similarity=0.214 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecC
Q psy90 5 AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEP 79 (125)
Q Consensus 5 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t 79 (125)
...+...|+..|...-+..+.+. .. ....+.+.|..-.+..-+.-.+.+.|.||++||..||.+.+.+
T Consensus 11 ~~e~q~~EleaL~sIy~d~~~~~--~~-----~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 78 (128)
T 2ebm_A 11 YGEEQRNELEALESIYPDSFTVL--SE-----NPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS 78 (128)
T ss_dssp HHHHHHHHHHHHHHHCSSSEEEC--CS-----SSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred hHHHHHHHHHHHHHHccCceEEc--cC-----CCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence 35667889999987766555542 11 3456666665322222233478899999999999999998765
No 57
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=96.83 E-value=0.028 Score=36.19 Aligned_cols=71 Identities=10% Similarity=0.045 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCC--CCCEEEEEEEeCCCCCCCCCeeEecCC
Q psy90 7 GRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPW--ESGSYKLRMIFKDDYPSTPPKCKFEPP 80 (125)
Q Consensus 7 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y--~gg~f~~~i~fp~~yP~~pP~v~f~t~ 80 (125)
.+...|+..|+..-+..+........ .....+.+.+..+.+..- ..-.+.+.|.+|++||..+|.|...+.
T Consensus 11 e~~~~EleaL~SIY~de~~~~~~~~~---~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~~ 83 (128)
T 2day_A 11 WVLPSEVEVLESIYLDELQVIKGNGR---TSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNP 83 (128)
T ss_dssp CHHHHHHHHHHHHSTTTEEEECCTTS---SCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCceEEecCCCC---CCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEcC
Confidence 46778999998777666665422110 034455666653222111 124788999999999999999988763
No 58
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=96.27 E-value=0.072 Score=36.96 Aligned_cols=83 Identities=17% Similarity=0.256 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCc-cCCC
Q psy90 7 GRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL-FHPN 85 (125)
Q Consensus 7 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i-~HPn 85 (125)
+||.+|+.++-=+. +...+. ++...++.+... .|....++|.++.+||.++|.+...-++ ++.
T Consensus 4 ~~li~Ei~~iGW~~-----l~~id~-----~~~~i~l~~~D~-----~gR~H~l~v~l~~~yp~~~P~~~~DlP~~~~~- 67 (186)
T 3zqs_A 4 SSLIEEIGTLGWDK-----LVYADT-----CFSTIKLKAEDA-----SGREHLITLKLKAKYPAESPDYFVDFPVPFCA- 67 (186)
T ss_dssp CSHHHHHHHHCGGG-----EEEECT-----TSSEEEEEEECT-----TSCEEEEEEECCTTTTTSCCEEECCCSSCCCC-
T ss_pred HHHHHHHHHhCCce-----eeeecC-----CccEEEEEEEeC-----CCCeEEEEEEECCCCCCCCCeeEEcCCCCccc-
Confidence 46778888874222 122222 778888888743 3678999999999999999987765554 332
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhc
Q psy90 86 VYPSDWKPAITIKQILLGIQDLLN 109 (125)
Q Consensus 86 i~~~~W~p~~tl~~vl~~i~~ll~ 109 (125)
.|++..++.+++.+.+..+.
T Consensus 68 ----~w~~~ssL~~v~~qF~~~Le 87 (186)
T 3zqs_A 68 ----SWTPQSSLISIYSQFLAAIE 87 (186)
T ss_dssp ----CCCTTCCHHHHHHHHHHHHH
T ss_pred ----ccCCCccHHHHHHHHHHHHH
Confidence 79999999999887776654
No 59
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=96.14 E-value=0.073 Score=34.62 Aligned_cols=74 Identities=15% Similarity=0.136 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhCCCCCeEEeecCCCC-CCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCC
Q psy90 6 IGRLSEERKGWRKDHPFGFVAKPAKNPD-GSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPP 80 (125)
Q Consensus 6 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~-~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~ 80 (125)
..+-..|+..|...-+..+......... .......+.+.|.+..+ .-..-.+.+.|.+|.+||..+|.|.+.+.
T Consensus 12 ~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~~ 86 (138)
T 2yz0_A 12 YEIQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKNV 86 (138)
T ss_dssp HHHHHHHHHHHHTTSSSSEECCSTTSSSSCSSCCSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEECC
T ss_pred HHHHHHHHHHHHHHChhhheecccccccccCCCCcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEecC
Confidence 4456778888887655544432111000 00024567777763222 11234788999999999999999998653
No 60
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.28 E-value=0.034 Score=35.80 Aligned_cols=68 Identities=12% Similarity=0.031 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhCCCC--CeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecC
Q psy90 7 GRLSEERKGWRKDHPF--GFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEP 79 (125)
Q Consensus 7 ~Rl~~E~~~l~~~~~~--~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t 79 (125)
.+...|+..|+..-+. .+....... .+...+.+.+... +..=..-.+.+.|.+|.+||..+|.|...+
T Consensus 10 e~q~~EleaL~SIy~d~~e~~~~~~~~----~~~~~f~i~l~~~-~~~~~~~~~~L~~~~p~~YP~~~P~i~l~~ 79 (128)
T 2ebk_A 10 EPVQEELSVLAAIFCRPHEWEVLSRSE----TDGTVFRIHTKAE-GFMDADIPLELVFHLPVNYPSCLPGISINS 79 (128)
T ss_dssp HHHHHHHHHHHHHHCCTTTCCCSEECS----SSCEEEEEEEECC-TTTTCCCEEEEEEEECSSTTSSCCCCCCCC
T ss_pred HHHHHHHHHHHHHcCCCCceEEecCCC----CCCCeEEEEecCC-CCCCCCeEEEEEEECCCCCCCCCCeEEEEh
Confidence 4566788888754432 333211110 0345777777632 210012478999999999999999997653
No 61
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=94.52 E-value=0.24 Score=32.99 Aligned_cols=72 Identities=8% Similarity=0.011 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHhCCC--CCeEEeecC----------CCCCC-CCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCC
Q psy90 5 AIGRLSEERKGWRKDHP--FGFVAKPAK----------NPDGS-LNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPST 71 (125)
Q Consensus 5 ~~~Rl~~E~~~l~~~~~--~~~~~~~~~----------~~~~~-~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~ 71 (125)
...+-..|+..|...-+ ..+.+.-.. ..... .....+.+.+.- .+ + ...+.+.|.+|.+||..
T Consensus 15 ~~e~Q~eElEaL~SIY~~~de~~v~d~~~~~~l~~~~~~~~~~~p~~~~~~i~l~~-~~-~--~~~i~L~v~lP~~YP~~ 90 (154)
T 2daw_A 15 SLQLQLLEMEMLFSMFPNQGEVKLEDVNALTNIKRYLEGTREALPPKIEFVITLQI-EE-P--KVKIDLQVTMPHSYPYL 90 (154)
T ss_dssp HHHHHHHHHHHHHHHCCSTTSEEESCGGGTHHHHHHHHTSCCSCCCCEEEEEEEEE-TT-T--TEEEEEEEEECSSTTSS
T ss_pred hHHHHHHHHHHHHHhCCCCCeEEEeccchHHHHHHhhcccccCCCCceEEEEEEec-CC-C--CceEEEEEEcCCCCCCC
Confidence 34566778888887655 455542100 00000 011244444331 11 1 13799999999999999
Q ss_pred CCeeEecCC
Q psy90 72 PPKCKFEPP 80 (125)
Q Consensus 72 pP~v~f~t~ 80 (125)
+|.|...+.
T Consensus 91 ~P~i~l~~~ 99 (154)
T 2daw_A 91 ALQLFGRSS 99 (154)
T ss_dssp CCEEEEECS
T ss_pred CCcEEEEeC
Confidence 999987653
No 62
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=94.43 E-value=0.54 Score=30.24 Aligned_cols=73 Identities=12% Similarity=0.057 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCC-C-CCCCCEEEEEEEeCCCCCCCCCeeEecC
Q psy90 6 IGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKG-T-PWESGSYKLRMIFKDDYPSTPPKCKFEP 79 (125)
Q Consensus 6 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~-t-~y~gg~f~~~i~fp~~yP~~pP~v~f~t 79 (125)
..+...|+..|+..-+..+........-.......+.+.+. +.+ . .-..-.+.+.|.||++||..+|.|.+.+
T Consensus 12 ~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~~i~l~-~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 86 (137)
T 1ukx_A 12 SQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLY-PQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKN 86 (137)
T ss_dssp HHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEEC-CTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEE
T ss_pred HHHHHHHHHHHHHHCcccceeccCcccCccCCCcEEEEEEe-cCCcCCcccceEEEEEEECCCCCCCCCCcEEEec
Confidence 45677899888877665555432110000001345566665 221 1 0012468899999999999999998753
No 63
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=92.77 E-value=0.51 Score=31.14 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.2
Q ss_pred EEEEEEEeCCCCCCCCCeeEecCC
Q psy90 57 SYKLRMIFKDDYPSTPPKCKFEPP 80 (125)
Q Consensus 57 ~f~~~i~fp~~yP~~pP~v~f~t~ 80 (125)
.+.+.|.+|.+||..||.|.....
T Consensus 74 ~l~L~v~lP~~YP~~~P~i~l~~~ 97 (152)
T 2dax_A 74 MFSLACILPFKYPAVLPEITVRSV 97 (152)
T ss_dssp EEEEEEEECSSTTSSCCCCEEECT
T ss_pred eEEEEEECCCCCCCCCCeEEEEcc
Confidence 688999999999999999987754
No 64
>3u3c_B Paxillin LD2 peptide; 4-helix bundle, focal adhesion, tyrosine kinase, transferase-signaling protein complex; 3.70A {Homo sapiens}
Probab=54.43 E-value=12 Score=16.75 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHhCCCCCe
Q psy90 5 AIGRLSEERKGWRKDHPFGF 24 (125)
Q Consensus 5 ~~~Rl~~E~~~l~~~~~~~~ 24 (125)
...||.-|+...+-+++.|.
T Consensus 6 eldrlllelnavqhnppsg~ 25 (26)
T 3u3c_B 6 ELDRLLLELNAVQHNPPSGX 25 (26)
T ss_pred HHHHHHHHHhhhccCCCCCC
Confidence 46799999999998888763
No 65
>2jrw_A Cyclic extended PEP.1; acetylcholine receptor, phage display, peptide cyclization, immune system; NMR {Synthetic}
Probab=39.91 E-value=12 Score=16.74 Aligned_cols=16 Identities=38% Similarity=0.698 Sum_probs=8.9
Q ss_pred CCCCCeeEecCCccCC
Q psy90 69 PSTPPKCKFEPPLFHP 84 (125)
Q Consensus 69 P~~pP~v~f~t~i~HP 84 (125)
|+.-|.-.|..+.|||
T Consensus 4 pmtlpenyfserpyhp 19 (26)
T 2jrw_A 4 PMTLPENYFSERPYHP 19 (26)
T ss_dssp CCCCSSSSCCSSSCCS
T ss_pred ccccchhhcccCCCCC
Confidence 3444444566666666
No 66
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=38.40 E-value=14 Score=22.15 Aligned_cols=13 Identities=23% Similarity=0.445 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHH
Q psy90 5 AIGRLSEERKGWR 17 (125)
Q Consensus 5 ~~~Rl~~E~~~l~ 17 (125)
-+||+++||+-|-
T Consensus 63 QLKRvQRdlrGLP 75 (87)
T 2rf4_B 63 QLKRIQRDFKGLP 75 (87)
T ss_dssp HHHHHHHHHHHSC
T ss_pred HHHHHHHhhcCCC
Confidence 4689999988763
No 67
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A*
Probab=32.51 E-value=40 Score=23.38 Aligned_cols=25 Identities=16% Similarity=0.321 Sum_probs=21.5
Q ss_pred CCCEEEEEEEeCCCCCC-----CCCeeEec
Q psy90 54 ESGSYKLRMIFKDDYPS-----TPPKCKFE 78 (125)
Q Consensus 54 ~gg~f~~~i~fp~~yP~-----~pP~v~f~ 78 (125)
+.|.|.|+-.+|.-||. .||-|.|.
T Consensus 109 ~~G~y~F~TI~Pg~yp~~~G~~R~~HIH~~ 138 (209)
T 2bum_A 109 GTGFWSFNTIKPGAVPGRKGSTQAPHISLI 138 (209)
T ss_dssp TTCCEEEEEECCCCCBCSTTCBCCCCEEEE
T ss_pred CCcEEEEEEEccCcccCCCCCccCcEEEEE
Confidence 35889999999999998 78888875
No 68
>3g9r_A Fusion complex of HIV-1 envelope glycoprotein and saccharomyces cerevisiae general...; GP41, MPER, membrane fusion, AIDS; 2.00A {Human immunodeficiency virus 1}
Probab=31.54 E-value=31 Score=17.47 Aligned_cols=14 Identities=36% Similarity=0.444 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHh
Q psy90 5 AIGRLSEERKGWRK 18 (125)
Q Consensus 5 ~~~Rl~~E~~~l~~ 18 (125)
-.+||..|++.+++
T Consensus 29 ~~~~~~~~~~~~~~ 42 (42)
T 3g9r_A 29 KIKRIENEIKRIKK 42 (42)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC
Confidence 47899999998863
No 69
>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A
Probab=24.60 E-value=1.5e+02 Score=19.26 Aligned_cols=44 Identities=16% Similarity=0.327 Sum_probs=30.5
Q ss_pred CcceeE--EEecCCCCCCCC-CCEEEEEEEeCCCCCCCCCeeEecCCcc
Q psy90 37 NLMNWE--CSIPGKKGTPWE-SGSYKLRMIFKDDYPSTPPKCKFEPPLF 82 (125)
Q Consensus 37 ~~~~w~--~~i~Gp~~t~y~-gg~f~~~i~fp~~yP~~pP~v~f~t~i~ 82 (125)
-+.+|. +.+.|+.+.... .-+=++...+-+.|+. |...+..+-|
T Consensus 31 ~~h~WtieV~vr~~~g~ei~~~~i~kV~f~LH~sF~n--p~r~v~~pPF 77 (140)
T 3qrl_A 31 PVRQWSIEIVLLDDEGKEIPATIFDKVIYHLHPTFAN--PNRTFTDPPF 77 (140)
T ss_dssp CCEEEEEEEEEECTTSCEECCTTEEEEEEECCTTSSS--CEEEECSTTC
T ss_pred cccEeeEEEEEeCCCCCcCchheEEEEEEEeCCCCCC--CeEEEcCCCc
Confidence 346998 888898887553 3455677788888774 7777766533
No 70
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1
Probab=24.27 E-value=46 Score=20.57 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHhC
Q psy90 3 GIAIGRLSEERKGWRKD 19 (125)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~ 19 (125)
..+.+||.||...+.+.
T Consensus 10 tg~vkRL~KE~~~Y~kE 26 (106)
T 1qsd_A 10 VKALKRLTKEEGYYQQE 26 (106)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45789999998887653
No 71
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}
Probab=24.14 E-value=54 Score=20.61 Aligned_cols=17 Identities=18% Similarity=0.315 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHhC
Q psy90 3 GIAIGRLSEERKGWRKD 19 (125)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~ 19 (125)
..+.+||.||...+.+.
T Consensus 14 tg~vkRL~KE~~~Y~kE 30 (116)
T 3mxz_A 14 TSTCKRIVKELHSYEKE 30 (116)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35789999998877653
No 72
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=22.13 E-value=63 Score=19.95 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHhC
Q psy90 3 GIAIGRLSEERKGWRKD 19 (125)
Q Consensus 3 ~~~~~Rl~~E~~~l~~~ 19 (125)
..+.+||.||...+.+.
T Consensus 13 t~~vkRL~KE~~~Y~kE 29 (108)
T 1h7c_A 13 TGVVRRLVKERVMYEKE 29 (108)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35789999998877653
No 73
>3kxt_A Chromatin protein CREN7; protein-DNA complex, crenarchaea chromatin protein, minor-GR binding, methylation; 1.60A {Sulfolobus solfataricus} PDB: 2jtm_A 3lwh_A* 3lwi_A*
Probab=20.83 E-value=65 Score=17.51 Aligned_cols=11 Identities=45% Similarity=0.839 Sum_probs=8.7
Q ss_pred EEEEeCCCCCC
Q psy90 60 LRMIFKDDYPS 70 (125)
Q Consensus 60 ~~i~fp~~yP~ 70 (125)
|+-.+|++||.
T Consensus 46 fR~k~pddy~~ 56 (56)
T 3kxt_A 46 FRHKLPDDYPI 56 (56)
T ss_dssp EEEECCTTCCC
T ss_pred eeeeCcCcCCC
Confidence 56678999984
Done!