RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy90
(125 letters)
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3,
crystallography, ligase; 1.75A {Saccharomyces
cerevisiae} PDB: 2eke_A 3ong_B
Length = 157
Score = 203 bits (518), Expect = 7e-69
Identities = 72/137 (52%), Positives = 90/137 (65%), Gaps = 12/137 (8%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
MS + + RL EERK WRKDHPFGF AKP K DGS++L WE IPGK+GT W G Y +
Sbjct: 1 MSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPI 60
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
+ + ++YPS PPK KF +HPNVYPS DW+PAIT+KQI+LG+QDLL
Sbjct: 61 TVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLL 120
Query: 109 NEPNIKDPAQAEAYTIY 125
+ PN PAQ A+ +
Sbjct: 121 DSPNPNSPAQEPAWRSF 137
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein
interaction, protein ligase complex; HET: DNA; 1.90A
{Schizosaccharomyces pombe}
Length = 163
Score = 197 bits (504), Expect = 9e-67
Identities = 85/137 (62%), Positives = 98/137 (71%), Gaps = 12/137 (8%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
S + RL EERK WR+DHPFGF AKP K+ DG L+LMNW+ IPGK T WE G YKL
Sbjct: 7 HSSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKL 66
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
M F ++YP+ PPKC+F PPLFHPNVYPS WKPAITIKQILLGIQDLL
Sbjct: 67 TMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLL 126
Query: 109 NEPNIKDPAQAEAYTIY 125
++PNI PAQ EAYT++
Sbjct: 127 DDPNIASPAQTEAYTMF 143
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small
ubiquitin like modifer, SMT3, ligase; 1.30A {Homo
sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A
1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A*
1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Length = 161
Score = 197 bits (503), Expect = 1e-66
Identities = 106/137 (77%), Positives = 118/137 (86%), Gaps = 12/137 (8%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
MSGIA+ RL++ERK WRKDHPFGFVA P KNPDG++NLMNWEC+IPGKKGTPWE G +KL
Sbjct: 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
RM+FKDDYPS+PPKCKFEPPLFHPNVYPS DW+PAITIKQILLGIQ+LL
Sbjct: 64 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 123
Query: 109 NEPNIKDPAQAEAYTIY 125
NEPNI+ PAQAEAYTIY
Sbjct: 124 NEPNIQSPAQAEAYTIY 140
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics
consortium, SGC, ubiquitin- conjugating enzyme; 2.18A
{Homo sapiens} SCOP: d.20.1.1
Length = 169
Score = 175 bits (445), Expect = 1e-57
Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 18/138 (13%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
M G A L + ++++ G AKP ++M WE I G + + W+ ++L
Sbjct: 20 MHGRAYLLLHRDFCDLKENNYKGITAKPVSE-----DMMEWEVEIEGLQNSVWQGLVFQL 74
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPNVYPSD-------------WKPAITIKQILLGIQDL 107
+ F +Y PP KF FHPNV P W T+ ILL +Q +
Sbjct: 75 TIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVM 134
Query: 108 LNEPNIKDPAQAEAYTIY 125
L+ P +++P EA I
Sbjct: 135 LSNPVLENPVNLEAARIL 152
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase,
yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 165
Score = 173 bits (441), Expect = 3e-57
Identities = 47/148 (31%), Positives = 70/148 (47%), Gaps = 27/148 (18%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
MS A RL +E + KD P G VA P N+ W+C I G TP+ G +
Sbjct: 1 MSKTAQKRLLKELQQLIKDSPPGIVAGP----KSENNIFIWDCLIQGPPDTPYADGVFNA 56
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPNVYPS-----------------------DWKPAITI 97
++ F DYP +PPK F P + HPN+YP+ W P ++
Sbjct: 57 KLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSV 116
Query: 98 KQILLGIQDLLNEPNIKDPAQAEAYTIY 125
++ILL + +L+EPNI+ A +A ++
Sbjct: 117 EKILLSVMSMLSEPNIESGANIDACILW 144
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase;
2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A
2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Length = 152
Score = 173 bits (440), Expect = 3e-57
Identities = 49/135 (36%), Positives = 66/135 (48%), Gaps = 15/135 (11%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
MS A RL + K ++D P G P N N+M W I G TPW+ G++KL
Sbjct: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----NIMLWNAVIFGPDDTPWDGGTFKL 55
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPNVYPS----------DWKPAITIKQILLGIQDLLNE 110
+ F +DYP+ PP +F +FHPN+Y W P + IL IQ LL +
Sbjct: 56 SLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCD 115
Query: 111 PNIKDPAQAEAYTIY 125
PN PA +EA +Y
Sbjct: 116 PNPNSPANSEAARMY 130
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation;
2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 169
Score = 172 bits (439), Expect = 1e-56
Identities = 49/135 (36%), Positives = 68/135 (50%), Gaps = 15/135 (11%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
MS A RL + K ++D P G A P + N+M W I G TP+E G+++L
Sbjct: 1 MSTPARRRLMRDFKRMKEDAPPGVSASPLPD-----NVMVWNAMIIGPADTPYEDGTFRL 55
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPNVYPS----------DWKPAITIKQILLGIQDLLNE 110
+ F ++YP+ PP KF +FHPNVY + W P + IL IQ L N+
Sbjct: 56 LLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFND 115
Query: 111 PNIKDPAQAEAYTIY 125
PN PA EA T++
Sbjct: 116 PNPASPANVEAATLF 130
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase,
UBL conjugation pathway, endo reticulum, membrane,
metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A
2kly_A
Length = 164
Score = 163 bits (415), Expect = 4e-53
Identities = 44/147 (29%), Positives = 65/147 (44%), Gaps = 27/147 (18%)
Query: 2 SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLR 61
+G A+ RL E K + P G VA P N WE I G + T +E G +
Sbjct: 1 AGTALKRLMAEYKQLTLNPPEGIVAGPMNEE----NFFEWEALIMGPEDTCFEFGVFPAI 56
Query: 62 MIFKDDYPSTPPKCKFEPPLFHPNVYPS-----------------------DWKPAITIK 98
+ F DYP +PPK +F +FHPN+YP W P +++
Sbjct: 57 LSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVE 116
Query: 99 QILLGIQDLLNEPNIKDPAQAEAYTIY 125
+ILL + +L EPN + A +A ++
Sbjct: 117 KILLSVVSMLAEPNDESGANVDASKMW 143
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G
structural genomics consortium, SGC, ligase; 2.40A
{Plasmodium falciparum} PDB: 3e95_C
Length = 156
Score = 162 bits (411), Expect = 9e-53
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 14/132 (10%)
Query: 5 AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIF 64
RL +E + +K + V+ ++ D L NW C+I G+ GT +E+ Y L +
Sbjct: 22 RSFRLLDELERGQKGNVSEGVSFGLESADDI-TLSNWSCTIFGQPGTVFENRIYSLTIFC 80
Query: 65 KDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGI-QDLLNEP 111
D+YP +PP KF+ + V +W TI+ IL+ + Q++L+
Sbjct: 81 DDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKNWNRNYTIETILISLRQEMLSSA 140
Query: 112 NIKDPAQAEAYT 123
N + P E
Sbjct: 141 NKRLPQPNEGEV 152
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Length = 138
Score = 138 bits (349), Expect = 2e-43
Identities = 33/138 (23%), Positives = 54/138 (39%), Gaps = 14/138 (10%)
Query: 1 MSGI-AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYK 59
MS + RL EE + K + + D + W +I G + E+ Y
Sbjct: 2 MSKVPRNFRLLEELEKGEKGFGPESCSYGLADSDDI-TMTKWNGTILGPPHSNHENRIYS 60
Query: 60 LRMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDL 107
L + +YP +PPK F + P V P+ DWK A T++ +LL ++
Sbjct: 61 LSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKE 120
Query: 108 LNEPNIKDPAQAEAYTIY 125
+ P K Q + +
Sbjct: 121 MATPANKKLRQPKEGETF 138
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme
domain, E2 domain, ligase-ligas inhibitor complex; HET:
U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Length = 183
Score = 134 bits (340), Expect = 1e-41
Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 27/147 (18%)
Query: 2 SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLR 61
S + L E KG +++ GF +L NWE +I G T +E G +K R
Sbjct: 5 SPSSQKALLLELKGLQEEPVEGFRVTLVDEG----DLYNWEVAIFGPPNTYYEGGYFKAR 60
Query: 62 MIFKDDYPSTPPKCKFEPPLFHPNVYPS-----------------------DWKPAITIK 98
+ F DYP +PP +F ++HPN+Y + W P ++
Sbjct: 61 LKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVR 120
Query: 99 QILLGIQDLLNEPNIKDPAQAEAYTIY 125
ILL + LLNEPN PA +A +Y
Sbjct: 121 TILLSVISLLNEPNTFSPANVDASVMY 147
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing,
nuclear protein, UBL conjugation pathway,ubiquitin,
ligase, structural genomics; 1.69A {Homo sapiens} SCOP:
d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Length = 160
Score = 130 bits (330), Expect = 2e-40
Identities = 30/138 (21%), Positives = 50/138 (36%), Gaps = 14/138 (10%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
+ RL EE + +K G V+ ++ D + L W I G T +E+ Y L
Sbjct: 22 VKVPRNFRLLEELEEGQKGVGDGTVSWGLED-DEDMTLTRWTGMIIGPPRTIYENRIYSL 80
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPNVYPS-------------DWKPAITIKQILLGIQDL 107
++ YP PP +F + V S W+ + +IK +L ++ L
Sbjct: 81 KIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRL 140
Query: 108 LNEPNIKDPAQAEAYTIY 125
+ Q Y
Sbjct: 141 MMSKENMKLPQPPEGQCY 158
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown
function, structural genomics consortium, SGC; 2.80A
{Plasmodium falciparum 3D7}
Length = 136
Score = 128 bits (325), Expect = 7e-40
Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 16/125 (12%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
G A R+ +E + K+ P + N+ W G + T + + YK+
Sbjct: 17 NLGNANYRIQKELNNFLKNPPINCTIDVHPS-----NIRIWIVQYVGLENTIYANEVYKI 71
Query: 61 RMIFKDDYPSTPPKCKFE-PPLFHPNVYPS----------DWKPAITIKQILLGIQDLLN 109
++IF D+YP PP F P H +VY + D+ P+++I ++L I +L+
Sbjct: 72 KIIFPDNYPLKPPIVYFLQKPPKHTHVYSNGDICLSVLGDDYNPSLSISGLILSIISMLS 131
Query: 110 EPNIK 114
K
Sbjct: 132 SAKEK 136
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation
pathway, structural genomics, structural genomics
consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB:
1pzv_A
Length = 172
Score = 129 bits (326), Expect = 1e-39
Identities = 37/148 (25%), Positives = 56/148 (37%), Gaps = 27/148 (18%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
+ L + K+ GF A +L WE I G T +E G +K
Sbjct: 14 LVPRGSLLLRRQLAELNKNPVEGFSAGLI----DDNDLYRWEVLIIGPPDTLYEGGVFKA 69
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPNVYPS-----------------------DWKPAITI 97
+ F DYP PPK KF ++HPNV + W P T+
Sbjct: 70 HLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTV 129
Query: 98 KQILLGIQDLLNEPNIKDPAQAEAYTIY 125
+ I++ + +L +PN PA +A +
Sbjct: 130 ETIMISVISMLADPNGDSPANVDAAKEW 157
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating
enzyme variant, UBC13, HUBC13, polyubiquitination,
ligase, signaling protein; NMR {Homo sapiens}
Length = 170
Score = 125 bits (315), Expect = 7e-38
Identities = 30/138 (21%), Positives = 50/138 (36%), Gaps = 14/138 (10%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
+ RL EE + +K G V+ ++ D + L W I G T +E+ Y L
Sbjct: 32 VKVPRNFRLLEELEEGQKGVGDGTVSWGLED-DEDMTLTRWTGMIIGPPRTIYENRIYSL 90
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPNVYPS-------------DWKPAITIKQILLGIQDL 107
++ YP PP +F + V S W+ + +IK +L ++ L
Sbjct: 91 KIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRL 150
Query: 108 LNEPNIKDPAQAEAYTIY 125
+ Q Y
Sbjct: 151 MMSKENMKLPQPPEGQCY 168
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin
carrier protein, thioester ligase; 2.00A {Spisula
solidissima} SCOP: d.20.1.1
Length = 156
Score = 122 bits (308), Expect = 4e-37
Identities = 43/134 (32%), Positives = 59/134 (44%), Gaps = 15/134 (11%)
Query: 2 SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLR 61
RL +E + G A P + NL W ++ G K T +ES YKL
Sbjct: 7 RHSVSKRLQQELRTLLMSGDPGITAFPDGD-----NLFKWVATLDGPKDTVYESLKYKLT 61
Query: 62 MIFKDDYPSTPPKCKFEPPLFHPNVYP----------SDWKPAITIKQILLGIQDLLNEP 111
+ F DYP PP KF P +HPNV +W + ++ ILL +Q LL EP
Sbjct: 62 LEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEP 121
Query: 112 NIKDPAQAEAYTIY 125
N P A+A ++
Sbjct: 122 NNASPLNAQAADMW 135
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics,
structural genomics consortium, unknown function; 1.86A
{Plasmodium vivax} SCOP: d.20.1.1
Length = 125
Score = 120 bits (304), Expect = 8e-37
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 16/125 (12%)
Query: 2 SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLR 61
G A R+ +E + + P N N+ W G + T + + YKL+
Sbjct: 4 MGNANYRIQKELHNFLNNPPINCTLDVHPN-----NIRIWIVKYVGLENTIYANEVYKLK 58
Query: 62 MIFKDDYPSTPPKCKFE-PPLFHPNVYP----------SDWKPAITIKQILLGIQDLLNE 110
+IF DDYP PP F P H +VY D+ P+++I ++L I +L+
Sbjct: 59 IIFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISMLSS 118
Query: 111 PNIKD 115
K
Sbjct: 119 AKEKK 123
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural
genomics consortium, (SGC), ligase; 1.82A {Homo sapiens}
SCOP: d.20.1.1
Length = 136
Score = 118 bits (297), Expect = 1e-35
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 15/114 (13%)
Query: 8 RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
RL +E + D P G + ++ W + G GT +E ++L F
Sbjct: 26 RLQKELLALQNDPPPGMTLNEKSVQN---SITQWIVDMEGAPGTLYEGEKFQLLFKFSSR 82
Query: 68 YPSTPPKCKF--EPPLFHPNVYPS----------DWKPAITIKQILLGIQDLLN 109
YP P+ F E HP+VY + DW PA++++ + L I +L+
Sbjct: 83 YPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS 136
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo
sapiens} SCOP: d.20.1.1
Length = 158
Score = 118 bits (298), Expect = 2e-35
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 15/135 (11%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
+ I + +E D P G P + +L + + +I G +GTP+ G +++
Sbjct: 10 LPPHIIRLVYKEVTTLTADPPDGIKVFPNEE-----DLTDLQVTIEGPEGTPYAGGLFRM 64
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPNVYPS----------DWKPAITIKQILLGIQDLLNE 110
+++ D+P++PPK F +FHPNV + DW + I+ +LL I+ LL
Sbjct: 65 KLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIH 124
Query: 111 PNIKDPAQAEAYTIY 125
PN + EA +
Sbjct: 125 PNPESALNEEAGRLL 139
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway,
structural genomics, protein structure initiative; 1.10A
{Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A
2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B
3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D
4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Length = 150
Score = 115 bits (291), Expect = 1e-34
Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 15/134 (11%)
Query: 2 SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLR 61
S +A+ R+ +E + +D P A P + +L +W+ +I G +P++ G + L
Sbjct: 2 SHMALKRIQKELQDLGRDPPAQCSAGPVGD-----DLFHWQATIMGPPESPYQGGVFFLT 56
Query: 62 MIFKDDYPSTPPKCKFEPPLFHPNVYP----------SDWKPAITIKQILLGIQDLLNEP 111
+ F DYP PPK F ++HPN+ S W PA+TI ++LL I LL +P
Sbjct: 57 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDP 116
Query: 112 NIKDPAQAEAYTIY 125
N DP E IY
Sbjct: 117 NPDDPLVPEIARIY 130
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens}
SCOP: d.20.1.1
Length = 179
Score = 116 bits (293), Expect = 2e-34
Identities = 43/135 (31%), Positives = 53/135 (39%), Gaps = 15/135 (11%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
G RL +E G A P + NL W +I G GT +E YKL
Sbjct: 27 ARGPVGKRLQQELMTLMMSGDKGISAFPESD-----NLFKWVGTIHGAAGTVYEDLRYKL 81
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPNVYP----------SDWKPAITIKQILLGIQDLLNE 110
+ F YP P KF P +HPNV W ++ ILL IQ LL E
Sbjct: 82 SLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGE 141
Query: 111 PNIKDPAQAEAYTIY 125
PNI P A ++
Sbjct: 142 PNIDSPLNTHAAELW 156
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural
genomics consortium, ubiquit ubiquitin-conjugating
enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP:
d.20.1.1
Length = 166
Score = 114 bits (287), Expect = 9e-34
Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 15/135 (11%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
A+ R+++E KD P A P + ++ +W+ +I G + +P+ G + L
Sbjct: 18 YFQGALKRINKELNDLSKDPPTNCSAGPVGD-----DMFHWQATIMGPEDSPYSGGVFFL 72
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPNVYP----------SDWKPAITIKQILLGIQDLLNE 110
+ F DYP PPK F ++HPN+ W PA+TI ++LL I LL +
Sbjct: 73 NIHFPSDYPFKPPKVNFTTKIYHPNINSQGAICLDILKDQWSPALTISKVLLSISSLLTD 132
Query: 111 PNIKDPAQAEAYTIY 125
PN DP E +Y
Sbjct: 133 PNPDDPLVPEIAHLY 147
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL
conjugation pathway; HET: CME; 1.94A {Homo sapiens}
SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Length = 165
Score = 114 bits (287), Expect = 1e-33
Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 15/135 (11%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
+A+ R+ +E +D P A P + ++ +W+ +I G +P++ G + L
Sbjct: 16 RGSMALKRIHKELNDLARDPPAQCSAGPVGD-----DMFHWQATIMGPNDSPYQGGVFFL 70
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPNVYP----------SDWKPAITIKQILLGIQDLLNE 110
+ F DYP PPK F ++HPN+ S W PA+TI ++LL I LL +
Sbjct: 71 TIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCD 130
Query: 111 PNIKDPAQAEAYTIY 125
PN DP E IY
Sbjct: 131 PNPDDPLVPEIARIY 145
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC,
ligase; 1.90A {Plasmodium yoelii}
Length = 216
Score = 115 bits (289), Expect = 2e-33
Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 16/136 (11%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
+ RL +E K ++ A + N W I G +GTP+E G + L
Sbjct: 20 QGSKELLRLQKELKDIENENVQEIDAHIKDS-----NFFEWVGFIKGPEGTPYEGGHFTL 74
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPNVYP-----------SDWKPAITIKQILLGIQDLLN 109
+ +DYP PPK KF ++HPN+ ++W PA+TI+ LL IQ LL+
Sbjct: 75 AITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLS 134
Query: 110 EPNIKDPAQAEAYTIY 125
+P DP AE +Y
Sbjct: 135 DPQPDDPQDAEVAKMY 150
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein
complex, E3 ligase, ubiquitiny TPR, heat-shock protein;
2.9A {Homo sapiens} SCOP: d.20.1.1
Length = 154
Score = 113 bits (284), Expect = 2e-33
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 15/134 (11%)
Query: 2 SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLR 61
S R+ +E + + G A+P ++ N + I G + +P+E G++KL
Sbjct: 3 SAGLPRRIIKETQRLLAEPVPGIKAEPDES-----NARYFHVVIAGPQDSPFEGGTFKLE 57
Query: 62 MIFKDDYPSTPPKCKFEPPLFHPNVYPS----------DWKPAITIKQILLGIQDLLNEP 111
+ ++YP PK +F ++HPNV W PA+ I+ +LL IQ LL+ P
Sbjct: 58 LFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAP 117
Query: 112 NIKDPAQAEAYTIY 125
N DP + +
Sbjct: 118 NPDDPLANDVAEQW 131
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation
pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Length = 194
Score = 114 bits (286), Expect = 3e-33
Identities = 38/135 (28%), Positives = 58/135 (42%), Gaps = 15/135 (11%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
+ + R+ +E D P A P + N+ W +I G G+ +E G + L
Sbjct: 45 LLSTSAKRIQKELADITLDPPPNCSAGPKGD-----NIYEWRSTILGPPGSVYEGGVFFL 99
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPNVYP----------SDWKPAITIKQILLGIQDLLNE 110
+ F +YP PPK F ++H N+ +W PA+TI ++LL I LL +
Sbjct: 100 DITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTD 159
Query: 111 PNIKDPAQAEAYTIY 125
N DP T Y
Sbjct: 160 CNPADPLVGSIATQY 174
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating
enzyme, protein degradatio structural proteomics in
europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB:
2bf8_A
Length = 159
Score = 112 bits (282), Expect = 5e-33
Identities = 37/139 (26%), Positives = 53/139 (38%), Gaps = 19/139 (13%)
Query: 1 MSGIAIGRLSEERKGWRKDHP---FGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGS 57
M+ IA+ R+ E K K N I G TP+E G
Sbjct: 5 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDE-----NFTELRGEIAGPPDTPYEGGR 59
Query: 58 YKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSD-----------WKPAITIKQILLGIQD 106
Y+L + + YP PPK +F ++HPN+ W A+T++ +LL +Q
Sbjct: 60 YQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQA 119
Query: 107 LLNEPNIKDPAQAEAYTIY 125
LL DP A Y
Sbjct: 120 LLAAAEPDDPQDAVVANQY 138
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas
conjugation pathway, structural genomics, structural
genomi consortium; 1.85A {Plasmodium falciparum} PDB:
3e95_A
Length = 149
Score = 111 bits (281), Expect = 6e-33
Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 15/128 (11%)
Query: 8 RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
R+++E + + P G +A P N ++ I G GTP+E G+YKL + +
Sbjct: 5 RITKETQNLANEPPPGIMAVPVPE-----NYRHFNILINGPDGTPYEGGTYKLELFLPEQ 59
Query: 68 YPSTPPKCKFEPPLFHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPA 117
YP PPK +F ++HPN+ W PA+ I+ +LL IQ LL+ P DP
Sbjct: 60 YPMEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPL 119
Query: 118 QAEAYTIY 125
++ +
Sbjct: 120 DSKVAEHF 127
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A
2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Length = 155
Score = 111 bits (280), Expect = 8e-33
Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 15/134 (11%)
Query: 2 SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLR 61
+ R+ +E + D G A+P + NL ++ +I G + +P+E G ++L
Sbjct: 3 AASLPKRIIKETEKLVSDPVPGITAEPHDD-----NLRYFQVTIEGPEQSPYEDGIFELE 57
Query: 62 MIFKDDYPSTPPKCKFEPPLFHPNVYP----------SDWKPAITIKQILLGIQDLLNEP 111
+ DDYP PK +F ++HPN+ ++W PA+ I+ +LL IQ LL P
Sbjct: 58 LYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASP 117
Query: 112 NIKDPAQAEAYTIY 125
N DP + +
Sbjct: 118 NPNDPLANDVAEDW 131
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure,
ATP-binding, isopeptide BO ligase, nucleotide-binding,
UBL conjugation pathway; 1.80A {Homo sapiens} PDB:
3k9p_A 1yla_A 2o25_A
Length = 201
Score = 112 bits (283), Expect = 8e-33
Identities = 37/139 (26%), Positives = 53/139 (38%), Gaps = 19/139 (13%)
Query: 1 MSGIAIGRLSEERKGWRK---DHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGS 57
M+ IA+ R+ E K K N I G TP+E G
Sbjct: 2 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDE-----NFTELRGEIAGPPDTPYEGGR 56
Query: 58 YKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSD-----------WKPAITIKQILLGIQD 106
Y+L + + YP PPK +F ++HPN+ W A+T++ +LL +Q
Sbjct: 57 YQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQA 116
Query: 107 LLNEPNIKDPAQAEAYTIY 125
LL DP A Y
Sbjct: 117 LLAAAEPDDPQDAVVANQY 135
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural
genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo
sapiens} SCOP: d.20.1.1
Length = 169
Score = 110 bits (278), Expect = 2e-32
Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 19/138 (13%)
Query: 2 SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLR 61
S RL E + P G K+ + + I G TP+E G +KL
Sbjct: 2 SMQRASRLKRELHMLATEPPPGITCWQDKD-----QMDDLRAQILGGANTPYEKGVFKLE 56
Query: 62 MIFKDDYPSTPPKCKFEPPLFHPNVYP--------------SDWKPAITIKQILLGIQDL 107
+I + YP PP+ +F P++HPN+ W+P++ I +L IQ L
Sbjct: 57 VIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLL 116
Query: 108 LNEPNIKDPAQAEAYTIY 125
++EPN DP A+ + +
Sbjct: 117 MSEPNPDDPLMADISSEF 134
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1;
inhibition, hydrolase-ligase complex; 3.30A {Homo
sapiens} PDB: 4ddi_A
Length = 399
Score = 116 bits (291), Expect = 2e-32
Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 15/133 (11%)
Query: 3 GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRM 62
+A+ R+ +E +D P A P + ++ +W+ +I G +P++ G + L +
Sbjct: 2 AMALKRIHKELNDLARDPPAQCSAGPVGD-----DMFHWQATIMGPNDSPYQGGVFFLTI 56
Query: 63 IFKDDYPSTPPKCKFEPPLFHPNVYP----------SDWKPAITIKQILLGIQDLLNEPN 112
F DYP PPK F ++HPN+ S W PA+TI ++LL I LL +PN
Sbjct: 57 HFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPN 116
Query: 113 IKDPAQAEAYTIY 125
DP E IY
Sbjct: 117 PDDPLVPEIARIY 129
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces
cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Length = 149
Score = 109 bits (274), Expect = 6e-32
Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 15/129 (11%)
Query: 8 RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
R+ +E + + D + ++ + + + G GTP+E G + + + +
Sbjct: 5 RIMKEIQAVKDDPAAHITLEFV----SESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPME 60
Query: 68 YPSTPPKCKFEPPLFHPNVYPSD-----------WKPAITIKQILLGIQDLLNEPNIKDP 116
YP PPK +F+ ++HPN+ W P IT+K L+ +Q LL P DP
Sbjct: 61 YPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDP 120
Query: 117 AQAEAYTIY 125
AE Y
Sbjct: 121 QDAEVAQHY 129
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein
complex, ubiquitin conjugating ENZY complex, peroxisomal
protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A
2y9o_A
Length = 172
Score = 108 bits (272), Expect = 2e-31
Identities = 33/147 (22%), Positives = 51/147 (34%), Gaps = 24/147 (16%)
Query: 1 MSGIAIGRLSEERKGWRKDH---------PFGFVAKPAKNPDGSLNLMNWECSIPGKKGT 51
M+ + R+ +E K K G + P +L WE I G T
Sbjct: 3 MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLN--PIDETDLSKWEAIISGPSDT 60
Query: 52 PWESGSYKLRMIFKDDYPSTPPKCKFEP-PLFHPNVY------------PSDWKPAITIK 98
P+E+ +++ + YP PPK F + H NV P +W P +
Sbjct: 61 PYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLL 120
Query: 99 QILLGIQDLLNEPNIKDPAQAEAYTIY 125
+ + LL EP P + I
Sbjct: 121 HCVHAVWRLLREPVCDSPLDVDIGNII 147
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2
M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Length = 160
Score = 107 bits (270), Expect = 4e-31
Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 17/135 (12%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
M+ A R+ ++ D +L+N++ I ++SG +
Sbjct: 3 MASAAQLRIQKDINELNLPKTCDISF-----SDPD-DLLNFKLVI-CPDEGFYKSGKFVF 55
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPNVYPS----------DWKPAITIKQILLGIQDLLNE 110
YP PPK K E ++HPN+ DWKP +TI I+ G+Q L E
Sbjct: 56 SFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLE 115
Query: 111 PNIKDPAQAEAYTIY 125
PN +DP EA +
Sbjct: 116 PNPEDPLNKEAAEVL 130
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent
degradation, ligase; NMR {Saccharomyces cerevisiae}
SCOP: a.5.2.1 d.20.1.1
Length = 215
Score = 109 bits (273), Expect = 4e-31
Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 15/132 (11%)
Query: 5 AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIF 64
R+ +E + + D + ++ + + + G GTP+E G + + +
Sbjct: 3 RAKRIMKEIQAVKDDPAAHITLEFV----SESDIHHLKGTFLGPPGTPYEGGKFVVDIEV 58
Query: 65 KDDYPSTPPKCKFEPPLFHPNVYP-----------SDWKPAITIKQILLGIQDLLNEPNI 113
+YP PPK +F+ ++HPN+ + W P IT+K L+ +Q LL P
Sbjct: 59 PMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEP 118
Query: 114 KDPAQAEAYTIY 125
DP AE Y
Sbjct: 119 NDPQDAEVAQHY 130
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics,
PSI, protein structure initiative; 2.63A {Trypanosoma
cruzi}
Length = 167
Score = 107 bits (268), Expect = 6e-31
Identities = 27/147 (18%), Positives = 52/147 (35%), Gaps = 22/147 (14%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSL-------NLMNWECSIPGKKGTPW 53
M I+ R+ ++ K ++ A + +P + + NW + + +
Sbjct: 5 MKNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVY 64
Query: 54 --ESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYP----------SDWKPAITIKQIL 101
+Y+L ++F DDYP PP +F P++ P V W P ++
Sbjct: 65 GGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVNDFWTPDQHASDVI 124
Query: 102 LGIQDLL---NEPNIKDPAQAEAYTIY 125
+ D + + D EA
Sbjct: 125 KLVLDRVFSQYKSRRDDDVNPEARHYL 151
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting,
ligase, alternative splicing, cytoplasm, UBL
conjugation, UBL conjugation pathway; 1.86A {Homo
sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Length = 253
Score = 109 bits (273), Expect = 8e-31
Identities = 37/136 (27%), Positives = 54/136 (39%), Gaps = 13/136 (9%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
M+ IA+ R+ E K K + N I G TP+E G Y+L
Sbjct: 54 MANIAVQRIKREFKEVLKSEETSKNQIKV-DLVDE-NFTELRGEIAGPPDTPYEGGRYQL 111
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPNVYPSD-----------WKPAITIKQILLGIQDLLN 109
+ + YP PPK +F ++HPN+ W A+T++ +LL +Q LL
Sbjct: 112 EIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLA 171
Query: 110 EPNIKDPAQAEAYTIY 125
DP A Y
Sbjct: 172 AAEPDDPQDAVVANQY 187
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721,
structural genomics, structural genomics consortium,
SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Length = 193
Score = 107 bits (269), Expect = 1e-30
Identities = 38/129 (29%), Positives = 55/129 (42%), Gaps = 16/129 (12%)
Query: 8 RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
R + G A+ ++ W I G GTP+E G + L ++ D
Sbjct: 49 RAHDSEPAATHSTSHGVSAQIVGG-----DIHRWRGFIAGPLGTPYEGGHFTLDIVIPPD 103
Query: 68 YPSTPPKCKFEPPLFHPNVYP-----------SDWKPAITIKQILLGIQDLLNEPNIKDP 116
YP PPK KF ++HPN+ +W PA+TI+ LL IQ +L +P DP
Sbjct: 104 YPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDP 163
Query: 117 AQAEAYTIY 125
AE +
Sbjct: 164 QDAEVAKMM 172
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens}
SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Length = 155
Score = 105 bits (265), Expect = 1e-30
Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 16/135 (11%)
Query: 2 SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLR 61
S +A R+ +E + +K P + N++ W + P+ ++ LR
Sbjct: 2 SHMASMRVVKELEDLQKKPPPYLRNLSS----DDANVLVWHALL-LPDQPPYHLKAFNLR 56
Query: 62 MIFKDDYPSTPPKCKFEPPLFHPNVYPS-----------DWKPAITIKQILLGIQDLLNE 110
+ F +YP PP KF ++HPNV + +WKP Q+L + L+N
Sbjct: 57 ISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNR 116
Query: 111 PNIKDPAQAEAYTIY 125
PNI++P + + +
Sbjct: 117 PNIREPLRMDLADLL 131
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular
complex, ubiquitin, ATP, conformational change,
thioester, switch, adenylation, protein turnover,
ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Length = 180
Score = 105 bits (264), Expect = 4e-30
Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 17/128 (13%)
Query: 8 RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
R+ ++ D +L+N++ I ++SG +
Sbjct: 30 RIQKDINELNLPKTCDISF-----SDPD-DLLNFKLVI-CPDEGFYKSGKFVFSFKVGQG 82
Query: 68 YPSTPPKCKFEPPLFHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPA 117
YP PPK K E ++HPN+ DWKP +TI I+ G+Q L EPN +DP
Sbjct: 83 YPHDPPKVKCETMVYHPNIDLEGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPL 142
Query: 118 QAEAYTIY 125
EA +
Sbjct: 143 NKEAAEVL 150
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure,
elongated shape, E3 ubiquitin ligase, E2 ubiquitin
conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1
PDB: 1fbv_C* 3sy2_C 3sqv_C
Length = 154
Score = 103 bits (260), Expect = 7e-30
Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 18/136 (13%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
M+ A RL +E + RK F NL+ W+ I P++ G++++
Sbjct: 1 MA--ASRRLMKELEEIRKCGMKNFRNIQV----DEANLLTWQGLI-VPDNPPYDKGAFRI 53
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPNVYPS-----------DWKPAITIKQILLGIQDLLN 109
+ F +YP PPK F+ ++HPN+ +WKPA Q++ + L+N
Sbjct: 54 EINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVN 113
Query: 110 EPNIKDPAQAEAYTIY 125
+P + P +A+ Y
Sbjct: 114 DPQPEHPLRADLAEEY 129
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A
{Saccharomyces cerevisiae} PDB: 3tdi_C
Length = 190
Score = 102 bits (255), Expect = 1e-28
Identities = 29/128 (22%), Positives = 44/128 (34%), Gaps = 11/128 (8%)
Query: 8 RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
RL + + + E I + GS + F +
Sbjct: 33 RLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEV-IVRPDEGYYNYGSINFNLDFNEV 91
Query: 68 YPSTPPKCKFEPPLFHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPA 117
YP PPK +FHPN+ DW PA+ ++ I+ G+ L EPN DP
Sbjct: 92 YPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPL 151
Query: 118 QAEAYTIY 125
+A +
Sbjct: 152 NKDAAKLL 159
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL
structural genomics consortium, SGC, ligase; HET: PG4;
2.38A {Plasmodium falciparum}
Length = 152
Score = 99.3 bits (248), Expect = 6e-28
Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 17/130 (13%)
Query: 8 RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
L+ ++ + K G+ + + +++ G GT +E G +K+ + DD
Sbjct: 3 SLTRKQCDFTKLIMAGYDLELNNG-----STQDFDVMFHGPNGTAYEGGIWKVHVTLPDD 57
Query: 68 YPSTPPKCKFEPPLFHPNVYPSD-----------WKPAITIKQIL-LGIQDLLNEPNIKD 115
YP P F L HPNV + W P ++ + + + LL PN D
Sbjct: 58 YPFASPSIGFMNKLLHPNVDEASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSD 117
Query: 116 PAQAEAYTIY 125
P ++A ++
Sbjct: 118 PLNSDAASLL 127
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural
genomics, structural genomics consortium; 2.10A {Homo
sapiens}
Length = 179
Score = 98.2 bits (245), Expect = 3e-27
Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 12/101 (11%)
Query: 37 NLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSD------ 90
L + G +GTP+E G +K+R+ D YP P F +FHPN+ +
Sbjct: 49 GLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLD 108
Query: 91 -----WKPAITIKQILL-GIQDLLNEPNIKDPAQAEAYTIY 125
W + I + LL PN DP +A +Y
Sbjct: 109 VINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMY 149
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle,
nucleotide-binding, UBL CON pathway; 2.50A {Homo
sapiens} PDB: 2edi_A
Length = 167
Score = 97.0 bits (242), Expect = 5e-27
Identities = 25/139 (17%), Positives = 44/139 (31%), Gaps = 22/139 (15%)
Query: 4 IAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMI 63
+ L +E + P N ++ ++ G ++
Sbjct: 14 VRDKLLVKEVAELEANLPCTCKVHFPDP-----NKLHCFQLTVTPDEGYYQGGKFQFETE 68
Query: 64 FKDDYPSTPPKCKFEPPLFHPNVY----------------PSDWKPAITIKQILLGIQDL 107
D Y PPK K ++HPN+ + W P T+K ++ G+ L
Sbjct: 69 VPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSL 128
Query: 108 LNE-PNIKDPAQAEAYTIY 125
+ N DP EA +
Sbjct: 129 FTDLLNFDDPLNIEAAEHH 147
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase,
UBL conjugation pathway, structural genomics consortium
(SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Length = 187
Score = 95.6 bits (238), Expect = 3e-26
Identities = 29/133 (21%), Positives = 50/133 (37%), Gaps = 16/133 (12%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
A RL ++ +KD A+P + N++ W + G + TP+E G Y
Sbjct: 11 APTTATQRLKQDYLRIKKDPVPYICAEPLPS-----NILEWHYVVRGPEMTPYEGGYYHG 65
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPNV-----------YPSDWKPAITIKQILLGIQDLLN 109
++IF ++P PP P +P W PA ++ IL G+ +
Sbjct: 66 KLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMV 125
Query: 110 EPNIKDPAQAEAY 122
E + +
Sbjct: 126 EKGPTLGSIETSD 138
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI,
protein structure initiative ubiquitin conjugating
enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Length = 171
Score = 94.0 bits (234), Expect = 1e-25
Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 12/101 (11%)
Query: 37 NLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSD------ 90
+ + G +GTP+E G++ L + DYP P F + HPNV
Sbjct: 36 TVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLD 95
Query: 91 -----WKPAITIKQIL-LGIQDLLNEPNIKDPAQAEAYTIY 125
W P ++ I + + LL PN DP +A +
Sbjct: 96 VINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLL 136
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase,
protease inhibitor, thiol protease inhibitor, UBL
conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Length = 323
Score = 89.4 bits (221), Expect = 9e-23
Identities = 33/141 (23%), Positives = 51/141 (36%), Gaps = 26/141 (18%)
Query: 2 SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLR 61
S RL++E P + D L + I G TP+ +G ++
Sbjct: 74 SAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEE-RLDIMKVLITGPADTPYANGCFEFD 132
Query: 62 MIFKDDYPSTPPKCKFE-----PPLFHPNVYPS-----------------DWKPAI-TIK 98
+ F DYPS+PP E F+PN+Y W P +
Sbjct: 133 VYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFL 192
Query: 99 QILLGIQDLL--NEPNIKDPA 117
Q+L+ +Q L+ EP +P
Sbjct: 193 QVLVSVQSLILVAEPYFNEPG 213
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating
enzyme, structural genomics consortium ,SGC; 1.80A {Homo
sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Length = 186
Score = 84.2 bits (208), Expect = 8e-22
Identities = 23/144 (15%), Positives = 44/144 (30%), Gaps = 26/144 (18%)
Query: 2 SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGK-KGTPWESG---- 56
S A RL +E + + + + + +L +W + +P S
Sbjct: 25 SVQASDRLMKELRDIYRSQSYKTGIYSVELIND--SLYDWHVKLQKVDPDSPLHSDLQIL 82
Query: 57 -------SYKLRMIFKDDYPSTPPKCKFEPPLFHPNV------------YPSDWKPAITI 97
L FKD++P PP + P+ W A +I
Sbjct: 83 KEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSI 142
Query: 98 KQILLGIQDLLNEPNIKDPAQAEA 121
+ +++ I L + + A
Sbjct: 143 ESVIMQINATLVKGKARVQFGANK 166
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.15
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 3/23 (13%)
Query: 76 KFEPPLFHPNVYPSDWKPAITIK 98
K + L +Y D PA+ IK
Sbjct: 24 KLQASL---KLYADDSAPALAIK 43
>3bso_A RNA dependent RNA polymerase; RNA-dependent RNA polymerase, viral
replication, antiviral E inhibitor, helicase,
hydrolase; HET: CTP; 1.74A {Norwalk virus} PDB: 3bsn_A*
3h5x_A* 3h5y_A* 1sh0_A 1sh2_A 1sh3_A 2b43_A
Length = 510
Score = 29.8 bits (66), Expect = 0.25
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 54 ESGSYK-LRMIFKDDYPSTPPKCKFEPPLFHPNVYPSDWKPAI 95
G+Y ++ P K KF P + P ++PA
Sbjct: 4 SKGTYCGAPILGPGSAPKLSTKTKFWRSSTAP-LPPGTYEPAY 45
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin
binding, protein transport; 1.40A {Homo sapiens} PDB:
3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A
1kpq_A 1m4p_A 1m4q_A 1s1q_A
Length = 146
Score = 29.1 bits (65), Expect = 0.25
Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 21/96 (21%)
Query: 32 PDGSLNLMNWECSIPGKKGTPWESGSYK--LRMIFKDDYPSTPPKCKFEPP-----LFHP 84
GS LMN +IP P+ +Y + + D YP PP C +P
Sbjct: 47 GTGSRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGK 102
Query: 85 NVYPS---------DWK-PAITIKQILLGIQDLLNE 110
+V + +WK P + ++ + + +
Sbjct: 103 HVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGD 138
>3uqs_A RNA-dependent RNA polymerase; transferase; 2.00A {Murine
norovirus} PDB: 3ur0_A* 3upf_A* 3sfg_A* 3nah_A 3nai_A
3qid_A* 3sfu_A*
Length = 515
Score = 29.4 bits (65), Expect = 0.28
Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 51 TPWESGSYK-LRMIFKDDYPSTPPKCKFEPPLFHPNVYPSDWKPAI 95
P SG+Y L + D P K F + P W+PA
Sbjct: 2 LPRPSGTYAGLPIADYGDAPPLSTKTMFWRTSPEK-LPPGAWEPAY 46
>1uai_A Alginate lyase, polyguluronate lyase; jellyroll beta-sandwich;
1.20A {Corynebacterium SP} SCOP: b.29.1.18
Length = 224
Score = 28.5 bits (63), Expect = 0.44
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 26 AKPAKNPDGSLNLMNWECSIP-GKKGTPWESGSYKLRMIFKDDY 68
A+P P L+L +W+ ++P G G P E L +
Sbjct: 1 AEPCDYPAQQLDLTDWKVTLPIGSSGKPSEIEQPALDTFATAPW 44
>2cws_A Alginate lyase A1-II'; polysaccharide lyase family-7; HET: SO4;
1.00A {Sphingomonas SP} PDB: 2z42_A 2zac_A* 2zab_A*
2zaa_A* 2za9_A
Length = 237
Score = 26.5 bits (58), Expect = 2.5
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 28 PAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDY 68
PA P + +L +W+ +P E S L + + Y
Sbjct: 2 PAAAPGKNFDLSHWKLQLPD--ANTTEISSANLGLGYTSQY 40
>1peq_A Ribonucleoside-diphosphate reductase 2 alpha chain; stranded
alpha/beta barrel, protein-specificity-effector complex,
DTTP; HET: TTP; 2.80A {Salmonella typhimurium} SCOP:
a.98.1.1 c.7.1.2 PDB: 1peo_A* 1pem_A* 1peu_A* 2bq1_E*
Length = 714
Score = 25.3 bits (56), Expect = 7.7
Identities = 7/44 (15%), Positives = 11/44 (25%)
Query: 49 KGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSDWK 92
+ + SG Y + + D P T W
Sbjct: 524 AQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGITLPTREMWL 567
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 128
Score = 24.5 bits (53), Expect = 9.4
Identities = 9/66 (13%), Positives = 19/66 (28%), Gaps = 9/66 (13%)
Query: 45 IPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSDWKPAITIKQILLGI 104
+ + G E+ L+ + + YP P + + + IL +
Sbjct: 44 VTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFSQ---------ENLEDNDVSDILKLL 94
Query: 105 QDLLNE 110
E
Sbjct: 95 ALQAEE 100
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.138 0.452
Gapped
Lambda K H
0.267 0.0601 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,059,095
Number of extensions: 110702
Number of successful extensions: 330
Number of sequences better than 10.0: 1
Number of HSP's gapped: 247
Number of HSP's successfully gapped: 66
Length of query: 125
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 43
Effective length of database: 4,412,271
Effective search space: 189727653
Effective search space used: 189727653
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.7 bits)