RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy90
(125 letters)
>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc9 [TaxId: 9606]}
Length = 156
Score = 116 bits (292), Expect = 3e-35
Identities = 103/135 (76%), Positives = 115/135 (85%), Gaps = 12/135 (8%)
Query: 3 GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRM 62
GIA+ RL++ERK WRKDHPFGFVA P KNPDG++NLMNWEC+IPGKKGTPWE G +KLRM
Sbjct: 1 GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 60
Query: 63 IFKDDYPSTPPKCKFEPPLFHPNVY------------PSDWKPAITIKQILLGIQDLLNE 110
+FKDDYPS+PPKCKFEPPLFHPNVY DW+PAITIKQILLGIQ+LLNE
Sbjct: 61 LFKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSILEEDKDWRPAITIKQILLGIQELLNE 120
Query: 111 PNIKDPAQAEAYTIY 125
PNI+DPAQAEAYTIY
Sbjct: 121 PNIQDPAQAEAYTIY 135
>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 U [TaxId: 9606]}
Length = 148
Score = 99.8 bits (248), Expect = 1e-28
Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 18/138 (13%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
M G A L + ++++ G AKP ++M WE I G + + W+ ++L
Sbjct: 1 MHGRAYLLLHRDFCDLKENNYKGITAKPVSE-----DMMEWEVEIEGLQNSVWQGLVFQL 55
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPNVYPSD-------------WKPAITIKQILLGIQDL 107
+ F +Y PP KF FHPNV P W T+ ILL +Q +
Sbjct: 56 TIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVM 115
Query: 108 LNEPNIKDPAQAEAYTIY 125
L+ P +++P EA I
Sbjct: 116 LSNPVLENPVNLEAARIL 133
>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}
Length = 139
Score = 95.0 bits (236), Expect = 7e-27
Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 8 RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
RL EE + +K G V+ ++ + L W I G T +E+ Y L++
Sbjct: 9 RLLEELEEGQKGVGDGTVSWGLEDDEDM-TLTRWTGMIIGPPRTIYENRIYSLKIECGPK 67
Query: 68 YPSTPPKCKFEPPLFHPNVYP-------------SDWKPAITIKQILLGIQDLLNEP-NI 113
YP PP +F + V + W+ + +IK +L ++ L+ N+
Sbjct: 68 YPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENM 127
Query: 114 KDPAQAEA 121
K P E
Sbjct: 128 KLPQPPEG 135
>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId:
4932]}
Length = 153
Score = 94.0 bits (233), Expect = 2e-26
Identities = 48/134 (35%), Positives = 67/134 (50%), Gaps = 15/134 (11%)
Query: 2 SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLR 61
S A RL + K ++D P G A P + N+M W I G TP+E G+++L
Sbjct: 1 STPARRRLMRDFKRMKEDAPPGVSASPLPD-----NVMVWNAMIIGPADTPYEDGTFRLL 55
Query: 62 MIFKDDYPSTPPKCKFEPPLFHPNVYP----------SDWKPAITIKQILLGIQDLLNEP 111
+ F ++YP+ PP KF +FHPNVY + W P + IL IQ L N+P
Sbjct: 56 LEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDP 115
Query: 112 NIKDPAQAEAYTIY 125
N PA EA T++
Sbjct: 116 NPASPANVEAATLF 129
>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa,
E2 domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 154
Score = 93.0 bits (230), Expect = 6e-26
Identities = 38/136 (27%), Positives = 54/136 (39%), Gaps = 13/136 (9%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
M+ IA+ R+ E K K D N I G TP+E G Y+L
Sbjct: 1 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDE--NFTELRGEIAGPPDTPYEGGRYQL 58
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPNVYPSD-----------WKPAITIKQILLGIQDLLN 109
+ + YP PPK +F ++HPN+ W A+T++ +LL +Q LL
Sbjct: 59 EIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLA 118
Query: 110 EPNIKDPAQAEAYTIY 125
DP A Y
Sbjct: 119 AAEPDDPQDAVVANQY 134
>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam
(Spisula solidissima), E-2C [TaxId: 6584]}
Length = 156
Score = 92.5 bits (229), Expect = 9e-26
Identities = 44/128 (34%), Positives = 60/128 (46%), Gaps = 15/128 (11%)
Query: 8 RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
RL +E + G A P + NL W ++ G K T +ES YKL + F D
Sbjct: 13 RLQQELRTLLMSGDPGITAFPDGD-----NLFKWVATLDGPKDTVYESLKYKLTLEFPSD 67
Query: 68 YPSTPPKCKFEPPLFHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPA 117
YP PP KF P +HPNV S +W + ++ ILL +Q LL EPN P
Sbjct: 68 YPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPL 127
Query: 118 QAEAYTIY 125
A+A ++
Sbjct: 128 NAQAADMW 135
>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}
Length = 136
Score = 91.6 bits (227), Expect = 1e-25
Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 13/130 (10%)
Query: 8 RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
RL EE + K + + D + + W +I G + E+ Y L + +
Sbjct: 8 RLLEELEKGEKGFGPESCSYGLADSD-DITMTKWNGTILGPPHSNHENRIYSLSIDCGPN 66
Query: 68 YPSTPPKCKFEPPLFHPNVYP------------SDWKPAITIKQILLGIQDLLNEPNIKD 115
YP +PPK F + P V P DWK A T++ +LL ++ + P K
Sbjct: 67 YPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMATPANKK 126
Query: 116 PAQAEAYTIY 125
Q + +
Sbjct: 127 LRQPKEGETF 136
>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}
Length = 164
Score = 90.6 bits (224), Expect = 8e-25
Identities = 46/147 (31%), Positives = 69/147 (46%), Gaps = 27/147 (18%)
Query: 2 SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLR 61
S A RL +E + KD P G VA P N+ W+C I G TP+ G + +
Sbjct: 1 SKTAQKRLLKELQQLIKDSPPGIVAGP----KSENNIFIWDCLIQGPPDTPYADGVFNAK 56
Query: 62 MIFKDDYPSTPPKCKFEPPLFHPNVYPS-----------------------DWKPAITIK 98
+ F DYP +PPK F P + HPN+YP+ W P +++
Sbjct: 57 LEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVE 116
Query: 99 QILLGIQDLLNEPNIKDPAQAEAYTIY 125
+ILL + +L+EPNI+ A +A ++
Sbjct: 117 KILLSVMSMLSEPNIESGANIDACILW 143
>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode
(Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}
Length = 161
Score = 90.2 bits (223), Expect = 1e-24
Identities = 37/141 (26%), Positives = 57/141 (40%), Gaps = 27/141 (19%)
Query: 8 RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
L ++ R+ GF A + D + WE + G T +E G +K + F D
Sbjct: 4 LLKKQLADMRRVPVDGFSAGLVDDND----IYKWEVLVIGPPDTLYEGGFFKAILDFPRD 59
Query: 68 YPSTPPKCKFEPPLFHPNVYPS-----------------------DWKPAITIKQILLGI 104
YP PPK KF ++HPN+ W P T++ ILL +
Sbjct: 60 YPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSV 119
Query: 105 QDLLNEPNIKDPAQAEAYTIY 125
+L +PN + PA +A +
Sbjct: 120 ISMLTDPNFESPANVDAAKMQ 140
>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC
{Caenorhabditis elegans, E2 2 [TaxId: 6239]}
Length = 147
Score = 87.2 bits (215), Expect = 1e-23
Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 15/132 (11%)
Query: 4 IAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMI 63
+A+ R+ +E + +D P A P + +L +W+ +I G +P++ G + L +
Sbjct: 1 MALKRIQKELQDLGRDPPAQCSAGPVGD-----DLFHWQATIMGPPESPYQGGVFFLTIH 55
Query: 64 FKDDYPSTPPKCKFEPPLFHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNI 113
F DYP PPK F ++HPN+ + W PA+TI ++LL I LL +PN
Sbjct: 56 FPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNP 115
Query: 114 KDPAQAEAYTIY 125
DP E IY
Sbjct: 116 DDPLVPEIARIY 127
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 83.5 bits (206), Expect = 1e-22
Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 15/114 (13%)
Query: 8 RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
RL +E + D P G + ++ W + G GT +E ++L F
Sbjct: 7 RLQKELLALQNDPPPGMTLNEKSVQN---SITQWIVDMEGAPGTLYEGEKFQLLFKFSSR 63
Query: 68 YPSTPPKCKFEPPLF--HPNVYPS----------DWKPAITIKQILLGIQDLLN 109
YP P+ F HP+VY + DW PA++++ + L I +L+
Sbjct: 64 YPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS 117
>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}
Length = 152
Score = 84.0 bits (207), Expect = 2e-22
Identities = 38/128 (29%), Positives = 62/128 (48%), Gaps = 15/128 (11%)
Query: 8 RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
R+ +E + D G A+P + NL ++ +I G + +P+E G ++L + DD
Sbjct: 7 RIIKETEKLVSDPVPGITAEPHDD-----NLRYFQVTIEGPEQSPYEDGIFELELYLPDD 61
Query: 68 YPSTPPKCKFEPPLFHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPA 117
YP PK +F ++HPN+ +W PA+ I+ +LL IQ LL PN DP
Sbjct: 62 YPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPL 121
Query: 118 QAEAYTIY 125
+ +
Sbjct: 122 ANDVAEDW 129
>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch8 [TaxId: 9606]}
Length = 148
Score = 83.7 bits (206), Expect = 2e-22
Identities = 39/131 (29%), Positives = 57/131 (43%), Gaps = 15/131 (11%)
Query: 5 AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIF 64
+ R+ +E D P A P + N+ W +I G G+ +E G + L + F
Sbjct: 3 SAKRIQKELAEITLDPPPNCSAGPKGD-----NIYEWRSTILGPPGSVYEGGVFFLDITF 57
Query: 65 KDDYPSTPPKCKFEPPLFHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIK 114
DYP PPK F ++H N+ +W PA+TI ++LL I LL + N
Sbjct: 58 SPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPA 117
Query: 115 DPAQAEAYTIY 125
DP T Y
Sbjct: 118 DPLVGSIATQY 128
>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}
Length = 149
Score = 83.3 bits (205), Expect = 3e-22
Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 15/129 (11%)
Query: 8 RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
R+ +E + + D + S ++ + + + G GTP+E G + + + +
Sbjct: 5 RIMKEIQAVKDDPAAHITLEF---VSES-DIHHLKGTFLGPPGTPYEGGKFVVDIEVPME 60
Query: 68 YPSTPPKCKFEPPLFHPNVYPSD-----------WKPAITIKQILLGIQDLLNEPNIKDP 116
YP PPK +F+ ++HPN+ W P IT+K L+ +Q LL P DP
Sbjct: 61 YPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDP 120
Query: 117 AQAEAYTIY 125
AE Y
Sbjct: 121 QDAEVAQHY 129
>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 L6 [TaxId: 9606]}
Length = 150
Score = 83.3 bits (205), Expect = 4e-22
Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 16/132 (12%)
Query: 5 AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIF 64
A R+ +E + +K P N++ W + P+ ++ LR+ F
Sbjct: 1 ASMRVVKELEDLQKKPPPYLRNLS----SDDANVLVWHALL-LPDQPPYHLKAFNLRISF 55
Query: 65 KDDYPSTPPKCKFEPPLFHPNVYPS-----------DWKPAITIKQILLGIQDLLNEPNI 113
+YP PP KF ++HPNV + +WKP Q+L + L+N PNI
Sbjct: 56 PPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNI 115
Query: 114 KDPAQAEAYTIY 125
++P + + +
Sbjct: 116 REPLRMDLADLL 127
>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 G1 [TaxId: 9606]}
Length = 125
Score = 80.9 bits (199), Expect = 2e-21
Identities = 34/127 (26%), Positives = 51/127 (40%), Gaps = 27/127 (21%)
Query: 8 RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
L + K+ GF A D + +L WE I G T +E G +K + F D
Sbjct: 3 LLRRQLAELNKNPVEGFSAGL---IDDN-DLYRWEVLIIGPPDTLYEGGVFKAHLTFPKD 58
Query: 68 YPSTPPKCKFEPPLFHPNVYPS-----------------------DWKPAITIKQILLGI 104
YP PPK KF ++HPNV + W P T++ I++ +
Sbjct: 59 YPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISV 118
Query: 105 QDLLNEP 111
+L +P
Sbjct: 119 ISMLADP 125
>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch10 [TaxId: 9606]}
Length = 146
Score = 81.4 bits (200), Expect = 2e-21
Identities = 42/131 (32%), Positives = 52/131 (39%), Gaps = 15/131 (11%)
Query: 5 AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIF 64
RL +E G A P + NL W +I G GT +E YKL + F
Sbjct: 2 VGKRLQQELMTLMMSGDKGISAFPESD-----NLFKWVGTIHGAAGTVYEDLRYKLSLEF 56
Query: 65 KDDYPSTPPKCKFEPPLFHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIK 114
YP P KF P +HPNV W ++ ILL IQ LL EPNI
Sbjct: 57 PSGYPYNAPTVKFLTPCYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNID 116
Query: 115 DPAQAEAYTIY 125
P A ++
Sbjct: 117 SPLNTHAAELW 127
>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 M [TaxId: 9606]}
Length = 157
Score = 81.3 bits (200), Expect = 2e-21
Identities = 35/134 (26%), Positives = 54/134 (40%), Gaps = 17/134 (12%)
Query: 2 SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLR 61
+ A R+ ++ D +L+N++ I ++SG +
Sbjct: 1 ASAAQLRIQKDINELNLPKTCDISF-----SDPD-DLLNFKLVI-CPDEGFYKSGKFVFS 53
Query: 62 MIFKDDYPSTPPKCKFEPPLFHPNVY----------PSDWKPAITIKQILLGIQDLLNEP 111
YP PPK K E ++HPN+ DWKP +TI I+ G+Q L EP
Sbjct: 54 FKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEP 113
Query: 112 NIKDPAQAEAYTIY 125
N +DP EA +
Sbjct: 114 NPEDPLNKEAAEVL 127
>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC
{Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId:
6239]}
Length = 149
Score = 80.6 bits (198), Expect = 4e-21
Identities = 46/131 (35%), Positives = 67/131 (51%), Gaps = 15/131 (11%)
Query: 5 AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIF 64
+ RL + K ++D P G P ++ N++ WE I G + TP+E G++KL + F
Sbjct: 4 SRRRLMRDFKKLQEDPPAGVSGAPTED-----NILTWEAIIFGPQETPFEDGTFKLSLEF 58
Query: 65 KDDYPSTPPKCKFEPPLFHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIK 114
++YP+ PP KF +FHPNVY W P + IL IQ LL+EPN
Sbjct: 59 TEEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPN 118
Query: 115 DPAQAEAYTIY 125
PA + A +Y
Sbjct: 119 SPANSLAAQLY 129
>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch7 [TaxId: 9606]}
Length = 144
Score = 79.4 bits (195), Expect = 8e-21
Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 16/129 (12%)
Query: 8 RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
RL +E + RK F NL+ W+ I P++ G++++ + F +
Sbjct: 3 RLMKELEEIRKCGMKNFRNIQVDEA----NLLTWQGLI-VPDNPPYDKGAFRIEINFPAE 57
Query: 68 YPSTPPKCKFEPPLFHPNVY-----------PSDWKPAITIKQILLGIQDLLNEPNIKDP 116
YP PPK F+ ++HPN+ +WKPA Q++ + L+N+P + P
Sbjct: 58 YPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP 117
Query: 117 AQAEAYTIY 125
+A+ Y
Sbjct: 118 LRADLAEEY 126
>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC
{Human(Homo sapiens), E2 S [TaxId: 9606]}
Length = 151
Score = 79.0 bits (194), Expect = 1e-20
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 15/135 (11%)
Query: 1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
+ I + +E D P G P + +L + + +I G +GTP+ G +++
Sbjct: 3 LPPHIIRLVYKEVTTLTADPPDGIKVFPNEE-----DLTDLQVTIEGPEGTPYAGGLFRM 57
Query: 61 RMIFKDDYPSTPPKCKFEPPLFHPNVYPS----------DWKPAITIKQILLGIQDLLNE 110
+++ D+P++PPK F +FHPNV + DW + I+ +LL I+ LL
Sbjct: 58 KLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIH 117
Query: 111 PNIKDPAQAEAYTIY 125
PN + EA +
Sbjct: 118 PNPESALNEEAGRLL 132
>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc13 [TaxId: 9606]}
Length = 149
Score = 79.1 bits (194), Expect = 2e-20
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 15/128 (11%)
Query: 8 RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
R+ +E + + G A+P ++ N + I G + +P+E G++KL + ++
Sbjct: 6 RIIKETQRLLAEPVPGIKAEPDES-----NARYFHVVIAGPQDSPFEGGTFKLELFLPEE 60
Query: 68 YPSTPPKCKFEPPLFHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPA 117
YP PK +F ++HPNV W PA+ I+ +LL IQ LL+ PN DP
Sbjct: 61 YPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 120
Query: 118 QAEAYTIY 125
+ +
Sbjct: 121 ANDVAEQW 128
>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721,
E2 domain {Toxoplasma gondii [TaxId: 5811]}
Length = 161
Score = 76.8 bits (188), Expect = 2e-19
Identities = 38/129 (29%), Positives = 55/129 (42%), Gaps = 16/129 (12%)
Query: 8 RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
R + G A+ ++ W I G GTP+E G + L ++ D
Sbjct: 18 RAHDSEPAATHSTSHGVSAQIVGG-----DIHRWRGFIAGPLGTPYEGGHFTLDIVIPPD 72
Query: 68 YPSTPPKCKFEPPLFHPNVY-----------PSDWKPAITIKQILLGIQDLLNEPNIKDP 116
YP PPK KF ++HPN+ +W PA+TI+ LL IQ +L +P DP
Sbjct: 73 YPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDP 132
Query: 117 AQAEAYTIY 125
AE +
Sbjct: 133 QDAEVAKMM 141
>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 J2 [TaxId: 9606]}
Length = 157
Score = 74.4 bits (182), Expect = 1e-18
Identities = 29/129 (22%), Positives = 50/129 (38%), Gaps = 16/129 (12%)
Query: 5 AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIF 64
A RL ++ +KD A+P + N++ W + G + TP+E G Y ++IF
Sbjct: 2 ATQRLKQDYLRIKKDPVPYICAEPLPS-----NILEWHYVVRGPEMTPYEGGYYHGKLIF 56
Query: 65 KDDYPSTPPKCKFEPPLFHPNV-----------YPSDWKPAITIKQILLGIQDLLNEPNI 113
++P PP P +P W PA ++ IL G+ + E
Sbjct: 57 PREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGP 116
Query: 114 KDPAQAEAY 122
+ +
Sbjct: 117 TLGSIETSD 125
>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 T [TaxId: 9606]}
Length = 154
Score = 73.7 bits (180), Expect = 2e-18
Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 19/132 (14%)
Query: 8 RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
RL E + P G K+ + + I G TP+E G +KL +I +
Sbjct: 6 RLKRELHMLATEPPPGITCWQDKD-----QMDDLRAQILGGANTPYEKGVFKLEVIIPER 60
Query: 68 YPSTPPKCKFEPPLFHPNVYPS--------------DWKPAITIKQILLGIQDLLNEPNI 113
YP PP+ +F P++HPN+ + W+P++ I +L IQ L++EPN
Sbjct: 61 YPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNP 120
Query: 114 KDPAQAEAYTIY 125
DP A+ + +
Sbjct: 121 DDPLMADISSEF 132
>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme,
E2 domain {Plasmodium chabaudi [TaxId: 5825]}
Length = 109
Score = 72.0 bits (176), Expect = 3e-18
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 16/113 (14%)
Query: 8 RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
R+ +E + + P N N+ W G + T + + YKL++IF DD
Sbjct: 2 RIQKELHNFLNNPPINCTLDVHPN-----NIRIWIVKYVGLENTIYANEVYKLKIIFPDD 56
Query: 68 YPSTPPKCKF-EPPLFHPNVYPS----------DWKPAITIKQILLGIQDLLN 109
YP PP F + P H +VY + D+ P+++I ++L I +L+
Sbjct: 57 YPLKPPIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISMLS 109
>d2z5da1 d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 H [TaxId: 9606]}
Length = 152
Score = 72.8 bits (178), Expect = 4e-18
Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 12/101 (11%)
Query: 37 NLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSD------ 90
L + G +GTP+E G +K+R+ D YP P F +FHPN+ +
Sbjct: 27 GLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLD 86
Query: 91 -----WKPAITIKQILLG-IQDLLNEPNIKDPAQAEAYTIY 125
W + I + LL PN DP +A +Y
Sbjct: 87 VINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMY 127
>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC
{Leishmania major [TaxId: 5664]}
Length = 158
Score = 72.8 bits (178), Expect = 4e-18
Identities = 27/121 (22%), Positives = 46/121 (38%), Gaps = 12/121 (9%)
Query: 17 RKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCK 76
R++ + + + S + + G +GTP+E G++ L + DYP P
Sbjct: 4 RREMDYMRLCNSTRKVYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIG 63
Query: 77 FEPPLFHPNVYPSD-----------WKPAITIKQ-ILLGIQDLLNEPNIKDPAQAEAYTI 124
F + HPNV W P ++ + + LL PN DP +A +
Sbjct: 64 FCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHL 123
Query: 125 Y 125
Sbjct: 124 L 124
>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 141
Score = 58.8 bits (142), Expect = 7e-13
Identities = 12/93 (12%), Positives = 27/93 (29%), Gaps = 17/93 (18%)
Query: 37 NLMNWECSIPGKKGTPWESGSYKLRMI--FKDDYPSTPPKCKFEPP-----LFHPNVYPS 89
++ G P+ +Y + + D YP PP C +P +V +
Sbjct: 45 GSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDAN 104
Query: 90 ----------DWKPAITIKQILLGIQDLLNEPN 112
P + ++ + + +
Sbjct: 105 GKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEP 137
>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 162
Score = 58.7 bits (141), Expect = 2e-12
Identities = 24/150 (16%), Positives = 47/150 (31%), Gaps = 28/150 (18%)
Query: 2 SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGK-KGTPWESGS--- 57
S A RL +E + + + + + +L +W + +P S
Sbjct: 2 SVQASDRLMKELRDIYRSQSYKTGIYSVELIND--SLYDWHVKLQKVDPDSPLHSDLQIL 59
Query: 58 --------YKLRMIFKDDYPSTPPKCKFEPPLFHPNVY------------PSDWKPAITI 97
L FKD++P PP + P+ W A +I
Sbjct: 60 KEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSI 119
Query: 98 KQILLGIQDLLNEPN--IKDPAQAEAYTIY 125
+ +++ I L + ++ A Y +
Sbjct: 120 ESVIMQINATLVKGKARVQFGANKNQYNLA 149
>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 152
Score = 51.1 bits (122), Expect = 7e-10
Identities = 16/107 (14%), Positives = 30/107 (28%), Gaps = 29/107 (27%)
Query: 31 NPDG-SLNLMNWECSIPGKKGTPWESGSY---KLRMIFKDDYPSTPPKCKFEPP------ 80
+ DG L++ +I T + S + M YP PP
Sbjct: 47 HSDGTPQLLLSIYGTIS----TGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNT 102
Query: 81 -----LFHPNVYPS----------DWKPAITIKQILLGIQDLLNEPN 112
+ + A+ + ++ + LL+EP
Sbjct: 103 ISSSLPIQEYIDSNGWIALPILHCWDPAAMNLIMVVQELMSLLHEPP 149
>d1sh0a_ e.8.1.4 (A:) Viral RNA polymerase {Norwalk virus [TaxId:
11983]}
Length = 502
Score = 28.0 bits (62), Expect = 0.32
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 67 DYPSTPPKCKFEPPLFHPNVYPSDWKPAI 95
P K KF P + P ++PA
Sbjct: 13 SAPKLSTKTKFWRSSTAP-LPPGTYEPAY 40
>d1uaia_ b.29.1.18 (A:) Polyguluronate lyase {Corynebacterium sp.
ALY-1 [TaxId: 101519]}
Length = 223
Score = 26.4 bits (58), Expect = 0.80
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 28 PAKNPDGSLNLMNWECSIP-GKKGTPWESGSYKLRMIFKDDY 68
P P L+L +W+ ++P G G P E L +
Sbjct: 2 PCDYPAQQLDLTDWKVTLPIGSSGKPSEIEQPALDTFATAPW 43
>d1vpka1 d.131.1.1 (A:1-120) DNA polymerase III, beta subunit
{Thermotoga maritima [TaxId: 2336]}
Length = 120
Score = 24.6 bits (53), Expect = 3.2
Identities = 4/20 (20%), Positives = 10/20 (50%)
Query: 54 ESGSYKLRMIFKDDYPSTPP 73
S +++ + D++P P
Sbjct: 101 GSTVFRITTMPADEFPEITP 120
>d2giya1 b.1.1.1 (A:218-394) Alphaherpesvirus glycoprotein E
{Human herpesvirus 1 [TaxId: 10298]}
Length = 177
Score = 24.0 bits (52), Expect = 5.4
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 8/31 (25%)
Query: 68 YPSTPPKCK----FEPPLFHPNV----YPSD 90
P C +E L+HP + P+D
Sbjct: 47 RFDVPTSCAEMRIYESCLYHPQLPECLSPAD 77
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.138 0.452
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 529,794
Number of extensions: 24275
Number of successful extensions: 135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 38
Length of query: 125
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 50
Effective length of database: 1,377,846
Effective search space: 68892300
Effective search space used: 68892300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.8 bits)