BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9001
(1351 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AMK|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 702
Score = 246 bits (628), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 145/411 (35%), Positives = 212/411 (51%), Gaps = 70/411 (17%)
Query: 81 GDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWA 140
G+FNNWN + +K FG W + + + +G + H S+VK R+ G +DR+ W
Sbjct: 83 GEFNNWNGAKHKMEKDKFGIWSIKIS-HVNGKPAIPHNSKVKFRFRHGGGAWVDRIPAWI 141
Query: 141 TYVT-EPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYE 199
Y T + G Y+ W+P +++ + +P KPD +IYE+HVG+ +E + ++Y
Sbjct: 142 RYATFDASKFGAPYDGVHWDPPACERYVFKHPRPPKPDAPRIYEAHVGMSGEEPEVSTYR 201
Query: 200 DFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQ 259
+F V+PRI + ++N ++ + + Y
Sbjct: 202 EFADNVLPRI------------------RANNYNTVQLMAIMEHSYY------------- 230
Query: 260 ALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTP 319
A G F+ + + T D ++D+A H G
Sbjct: 231 ASFGYHVTNFFAVS----SRSGTPEDLKYLVDKA-----------------HSLG----- 264
Query: 320 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRL 379
L+ L+D H S+ + L+G + T +FH G RG H LWDSRL
Sbjct: 265 --LRVLMDVVHSHA---------SNNVTDGLNGYDVGQNTHESYFHTGDRGYHKLWDSRL 313
Query: 380 FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVD 439
FNY+ EVLRFLLSNLR+++DE+ FDGFRFDGVTSMLYH+HG +GF+G+Y EYF L+ D
Sbjct: 314 FNYANWEVLRFLLSNLRYWMDEFMFDGFRFDGVTSMLYHHHGINKGFTGNYKEYFSLDTD 373
Query: 440 TDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLEI 490
DA++Y+M+AN +H PE +AEDVSGMP CRPV EGG GFD+RL +
Sbjct: 374 VDAIVYMMLANHLMHKLLPEATIVAEDVSGMPVLCRPVDEGGVGFDFRLAM 424
Score = 243 bits (620), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 113/179 (63%), Positives = 136/179 (75%), Gaps = 3/179 (1%)
Query: 1030 GTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFD---GTQACFFHDGPRGTHP 1086
GTPE LKYLVD+ H GL VL+DVVHSHAS NV DGLN +D T +FH G RG H
Sbjct: 248 GTPEDLKYLVDKAHSLGLRVLMDVVHSHASNNVTDGLNGYDVGQNTHESYFHTGDRGYHK 307
Query: 1087 LWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEY 1146
LWDSRLFNY+ EVLRFLLSNLR++++E+ FDGFRFDGVTSMLYH+HG +GF+G+Y EY
Sbjct: 308 LWDSRLFNYANWEVLRFLLSNLRYWMDEFMFDGFRFDGVTSMLYHHHGINKGFTGNYKEY 367
Query: 1147 FGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYL 1205
F L+ D DA++Y+M+AN +H PE +AEDVSGMP CRPV EGG GFD+RL +
Sbjct: 368 FSLDTDVDAIVYMMLANHLMHKLLPEATIVAEDVSGMPVLCRPVDEGGVGFDFRLAMAI 426
Score = 110 bits (276), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/84 (63%), Positives = 62/84 (73%)
Query: 211 KQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFW 270
+ MAIPD+WI+ LK +D W+M IV TLTNRRY EK +AYAESHDQ++VGDKTIAF
Sbjct: 421 RLAMAIPDRWIDYLKNKEDRKWSMSEIVQTLTNRRYTEKCIAYAESHDQSIVGDKTIAFL 480
Query: 271 LMDKEMYTHMSTLSDPSLIIDRAC 294
LMDKEMYT MS L S I+R
Sbjct: 481 LMDKEMYTGMSDLQPASPTINRGI 504
Score = 80.5 bits (197), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 69/144 (47%), Gaps = 32/144 (22%)
Query: 499 VGTFDAAMNTTEERFKWLSADPGYVSTKHEGDKVIIFERAGLLFAFNFNGTQSFTDYRYC 558
+ FD AMN EE F +LS+ VS +E DKVI+FER L+F FNF+ +++ Y
Sbjct: 567 MNAFDQAMNALEEEFSFLSSSKQIVSDMNEKDKVIVFERGDLVFVFNFHPNKTYKGY--- 623
Query: 559 STQSYSTHNTWTWRGSISKLHRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPE- 617
+VG + GKY+V LDSD FGG R+ + T PE
Sbjct: 624 ---------------------KVGCDLPGKYRVALDSDALVFGGHGRVGHDVDHFTSPEG 662
Query: 618 -------PWNNRRNSIKLYLPTRT 634
+NNR NS K+ P RT
Sbjct: 663 MPGVPETNFNNRPNSFKVLSPPRT 686
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/38 (68%), Positives = 31/38 (81%)
Query: 718 QLYLTGYNAVQLMAIMEHAYYASFGYQVTSFFAASSRT 755
++ YN VQLMAIMEH+YYASFGY VT+FFA SSR+
Sbjct: 210 RIRANNYNTVQLMAIMEHSYYASFGYHVTNFFAVSSRS 247
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 844 FLEQLSPWATYVT-EPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICT 902
+++++ W Y T + G Y+ W+P +++ + +P KP+ +IYE+HVG+
Sbjct: 133 WVDRIPAWIRYATFDASKFGAPYDGVHWDPPACERYVFKHPRPPKPDAPRIYEAHVGMSG 192
Query: 903 QEQKCASYEDFVRVVIPRIVKQGDFNNWN 931
+E + ++Y +F V+PRI NN+N
Sbjct: 193 EEPEVSTYREFADNVLPRIRA----NNYN 217
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 1214 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPE--------PWNNRRNSIKLYLP 1265
+VG + GKY+V LDSD FGG R+ + T PE +NNR NS K+ P
Sbjct: 624 KVGCDLPGKYRVALDSDALVFGGHGRVGHDVDHFTSPEGMPGVPETNFNNRPNSFKVLSP 683
Query: 1266 TRTGI 1270
RT +
Sbjct: 684 PRTCV 688
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 955 GDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRFGTPE 1014
G+FNNWN + +K FG W + + + +G + H S+VK R+ G +DR P
Sbjct: 83 GEFNNWNGAKHKMEKDKFGIWSIKI-SHVNGKPAIPHNSKVKFRFRHGGGAWVDRI--PA 139
Query: 1015 QLKYLVDECHKAGLFGTP 1032
++Y + K FG P
Sbjct: 140 WIRYATFDASK---FGAP 154
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 17/25 (68%)
Query: 53 GTPEQLKYLVDECHKAGLLCFMHVV 77
GTPE LKYLVD+ H GL M VV
Sbjct: 248 GTPEDLKYLVDKAHSLGLRVLMDVV 272
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 15 GTPEQLKYLVDECHKAGL 32
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 34 GTPEQLKYLVDECHKAGL 51
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 688 EKFTTSYNKYGIHVQADNSVRCFEWAPSAQQLYLTG 723
E+F+ Y K+GI+ D + EWAP+AQ+ L G
Sbjct: 49 EEFSKGYLKFGINT-VDGATIYREWAPAAQEAQLIG 83
>pdb|3AML|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 755
Score = 245 bits (625), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 114/177 (64%), Positives = 136/177 (76%), Gaps = 3/177 (1%)
Query: 317 GTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFD---GTQACFFHDGPRGTHP 373
GTPE LKYLVD+ H GL VL+DVVHSHAS NV DGLN +D T +FH G RG H
Sbjct: 248 GTPEDLKYLVDKAHSLGLRVLMDVVHSHASNNVTDGLNGYDVGQNTHESYFHTGDRGYHK 307
Query: 374 LWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEY 433
LWDSRLFNY+ EVLRFLLSNLR+++DE+ FDGFRFDGVTSMLYH+HG +GF+G+Y EY
Sbjct: 308 LWDSRLFNYANWEVLRFLLSNLRYWMDEFMFDGFRFDGVTSMLYHHHGINKGFTGNYKEY 367
Query: 434 FGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLEI 490
F L+ D DA++Y+M+AN +H PE +AEDVSGMP CRPV EGG GFD+RL +
Sbjct: 368 FSLDTDVDAIVYMMLANHLMHKLLPEATIVAEDVSGMPVLCRPVDEGGVGFDFRLAM 424
Score = 243 bits (620), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 113/179 (63%), Positives = 136/179 (75%), Gaps = 3/179 (1%)
Query: 1030 GTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFD---GTQACFFHDGPRGTHP 1086
GTPE LKYLVD+ H GL VL+DVVHSHAS NV DGLN +D T +FH G RG H
Sbjct: 248 GTPEDLKYLVDKAHSLGLRVLMDVVHSHASNNVTDGLNGYDVGQNTHESYFHTGDRGYHK 307
Query: 1087 LWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEY 1146
LWDSRLFNY+ EVLRFLLSNLR++++E+ FDGFRFDGVTSMLYH+HG +GF+G+Y EY
Sbjct: 308 LWDSRLFNYANWEVLRFLLSNLRYWMDEFMFDGFRFDGVTSMLYHHHGINKGFTGNYKEY 367
Query: 1147 FGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYL 1205
F L+ D DA++Y+M+AN +H PE +AEDVSGMP CRPV EGG GFD+RL +
Sbjct: 368 FSLDTDVDAIVYMMLANHLMHKLLPEATIVAEDVSGMPVLCRPVDEGGVGFDFRLAMAI 426
Score = 110 bits (276), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/84 (63%), Positives = 62/84 (73%)
Query: 211 KQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFW 270
+ MAIPD+WI+ LK +D W+M IV TLTNRRY EK +AYAESHDQ++VGDKTIAF
Sbjct: 421 RLAMAIPDRWIDYLKNKEDRKWSMSEIVQTLTNRRYTEKCIAYAESHDQSIVGDKTIAFL 480
Query: 271 LMDKEMYTHMSTLSDPSLIIDRAC 294
LMDKEMYT MS L S I+R
Sbjct: 481 LMDKEMYTGMSDLQPASPTINRGI 504
Score = 84.0 bits (206), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 72/130 (55%), Gaps = 2/130 (1%)
Query: 81 GDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWA 140
G+FNNWN + +K FG W + + + +G + H S+VK R+ G +DR+ W
Sbjct: 83 GEFNNWNGAKHKMEKDKFGIWSIKIS-HVNGKPAIPHNSKVKFRFRHGGGAWVDRIPAWI 141
Query: 141 TYVT-EPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYE 199
Y T + G Y+ W+P +++ + +P KPD +IYE+HVG+ +E + ++Y
Sbjct: 142 RYATFDASKFGAPYDGVHWDPPACERYVFKHPRPPKPDAPRIYEAHVGMSGEEPEVSTYR 201
Query: 200 DFVRVVIPRI 209
+F V+PRI
Sbjct: 202 EFADNVLPRI 211
Score = 80.5 bits (197), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 69/144 (47%), Gaps = 32/144 (22%)
Query: 499 VGTFDAAMNTTEERFKWLSADPGYVSTKHEGDKVIIFERAGLLFAFNFNGTQSFTDYRYC 558
+ FD AMN EE F +LS+ VS +E DKVI+FER L+F FNF+ +++ Y
Sbjct: 567 MNAFDQAMNALEEEFSFLSSSKQIVSDMNEKDKVIVFERGDLVFVFNFHPNKTYKGY--- 623
Query: 559 STQSYSTHNTWTWRGSISKLHRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPE- 617
+VG + GKY+V LDSD FGG R+ + T PE
Sbjct: 624 ---------------------KVGCDLPGKYRVALDSDALVFGGHGRVGHDVDHFTSPEG 662
Query: 618 -------PWNNRRNSIKLYLPTRT 634
+NNR NS K+ P RT
Sbjct: 663 MPGVPETNFNNRPNSFKVLSPPRT 686
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/38 (68%), Positives = 31/38 (81%)
Query: 718 QLYLTGYNAVQLMAIMEHAYYASFGYQVTSFFAASSRT 755
++ YN VQLMAIMEH+YYASFGY VT+FFA SSR+
Sbjct: 210 RIRANNYNTVQLMAIMEHSYYASFGYHVTNFFAVSSRS 247
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 844 FLEQLSPWATYVT-EPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICT 902
+++++ W Y T + G Y+ W+P +++ + +P KP+ +IYE+HVG+
Sbjct: 133 WVDRIPAWIRYATFDASKFGAPYDGVHWDPPACERYVFKHPRPPKPDAPRIYEAHVGMSG 192
Query: 903 QEQKCASYEDFVRVVIPRIVKQGDFNNWN 931
+E + ++Y +F V+PRI NN+N
Sbjct: 193 EEPEVSTYREFADNVLPRIRA----NNYN 217
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 1214 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPE--------PWNNRRNSIKLYLP 1265
+VG + GKY+V LDSD FGG R+ + T PE +NNR NS K+ P
Sbjct: 624 KVGCDLPGKYRVALDSDALVFGGHGRVGHDVDHFTSPEGMPGVPETNFNNRPNSFKVLSP 683
Query: 1266 TRTGI 1270
RT +
Sbjct: 684 PRTCV 688
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 955 GDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRFGTPE 1014
G+FNNWN + +K FG W + + + +G + H S+VK R+ G +DR P
Sbjct: 83 GEFNNWNGAKHKMEKDKFGIWSIKI-SHVNGKPAIPHNSKVKFRFRHGGGAWVDRI--PA 139
Query: 1015 QLKYLVDECHKAGLFGTP 1032
++Y + K FG P
Sbjct: 140 WIRYATFDASK---FGAP 154
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 17/25 (68%)
Query: 53 GTPEQLKYLVDECHKAGLLCFMHVV 77
GTPE LKYLVD+ H GL M VV
Sbjct: 248 GTPEDLKYLVDKAHSLGLRVLMDVV 272
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 15 GTPEQLKYLVDECHKAGL 32
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 34 GTPEQLKYLVDECHKAGL 51
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 688 EKFTTSYNKYGIHVQADNSVRCFEWAPSAQQLYLTG 723
E+F+ Y K+GI+ D + EWAP+AQ+ L G
Sbjct: 49 EEFSKGYLKFGINT-VDGATIYREWAPAAQEAQLIG 83
>pdb|3K1D|A Chain A, Crystal Structure Of Glycogen Branching Enzyme Synonym: 1,4-
Glucan:1,4-Alpha-D-Glucan 6-Glucosyl-Transferase From
Mycob Tuberculosis H37rv
Length = 722
Score = 103 bits (256), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 89/172 (51%), Gaps = 3/172 (1%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1088
FGTP+ + LVD H+AG+ V++D V +H K+ L FDGT D RG W
Sbjct: 309 FGTPDDFRALVDALHQAGIGVIVDWVPAHFPKDAW-ALGRFDGTPLYEHSDPKRGEQLDW 367
Query: 1089 DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 1148
+ +F++ EV FL++N ++L+E+ DG R D V SMLY ++ EG G G
Sbjct: 368 GTYVFDFGRPEVRNFLVANALYWLQEFHIDGLRVDAVASMLYLDYSRPEG--GWTPNVHG 425
Query: 1149 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYR 1200
+ +A+ +L N H P I+TIAE+ + RP GG GF +
Sbjct: 426 GRENLEAVQFLQEMNATAHKVAPGIVTIAEESTPWSGVTRPTNIGGLGFSMK 477
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 98/212 (46%), Gaps = 19/212 (8%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 375
FGTP+ + LVD H+AG+ V++D V +H K+ L FDGT D RG W
Sbjct: 309 FGTPDDFRALVDALHQAGIGVIVDWVPAHFPKDAW-ALGRFDGTPLYEHSDPKRGEQLDW 367
Query: 376 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 435
+ +F++ EV FL++N ++L E+ DG R D V SMLY ++ EG G G
Sbjct: 368 GTYVFDFGRPEVRNFLVANALYWLQEFHIDGLRVDAVASMLYLDYSRPEG--GWTPNVHG 425
Query: 436 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLEIRPDMS 495
+ +A+ +L N H P I+TIAE+ + RP GG GF +
Sbjct: 426 GRENLEAVQFLQEMNATAHKVAPGIVTIAEESTPWSGVTRPTNIGGLGFSMKWN------ 479
Query: 496 DMTVGTFDAAMNTTEERFKWLSADPGYVSTKH 527
M + ++S DP Y S H
Sbjct: 480 ----------MGWMHDTLDYVSRDPVYRSYHH 501
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 38/142 (26%)
Query: 505 AMNTTEERFKWLSADPGYVSTKHEGDKVIIFERAG-----LLFAFNFNGTQSFTDYRYCS 559
+++TT E + W+ A+ + V+ F R G L FNF G +
Sbjct: 614 SLDTTPEGYSWIDAN-------DSANNVLSFMRYGSDGSVLACVFNFAGAEH-------- 658
Query: 560 TQSYSTHNTWTWRGSISKLHRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPW 619
+ +R+G+ +AG+++ VL++D + + G + G V T +PW
Sbjct: 659 -----------------RDYRLGLPRAGRWREVLNTDATIYHGSGIGNLGGVDAT-DDPW 700
Query: 620 NNRRNSIKLYLPTRTGLILTTS 641
+ R S L LP + L LT +
Sbjct: 701 HGRPASAVLVLPPTSALWLTPA 722
Score = 38.5 bits (88), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 723 GYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 754
G+ V+L+ + EH + S+GYQVTS++A +SR
Sbjct: 277 GFTHVELLPVAEHPFAGSWGYQVTSYYAPTSR 308
Score = 33.1 bits (74), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 1214 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGI 1270
R+G+ +AG+++ VL++D + + G + G V T +PW+ R S L LP + +
Sbjct: 662 RLGLPRAGRWREVLNTDATIYHGSGIGNLGGVDAT-DDPWHGRPASAVLVLPPTSAL 717
>pdb|1M7X|A Chain A, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|B Chain B, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|C Chain C, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|D Chain D, The X-Ray Crystallographic Structure Of Branching Enzyme
Length = 617
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 90/173 (52%), Gaps = 5/173 (2%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPR-GTHPL 1087
FGT + +Y +D H AGL V+LD V H + L EFDGT + H PR G H
Sbjct: 201 FGTRDDFRYFIDAAHAAGLNVILDWVPGHFPTDDF-ALAEFDGTN-LYEHSDPREGYHQD 258
Query: 1088 WDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYF 1147
W++ ++NY EV FL+ N +++E + D R D V SM+Y ++ EG F
Sbjct: 259 WNTLIYNYGRREVSNFLVGNALYWIERFGIDALRVDAVASMIYRDYSRKEG--EWIPNEF 316
Query: 1148 GLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYR 1200
G + +A+ +L N+ L ++ +T+AE+ + P RP GG GF Y+
Sbjct: 317 GGRENLEAIEFLRNTNRILGEQVSGAVTMAEESTDFPGVSRPQDMGGLGFWYK 369
Score = 100 bits (248), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 91/176 (51%), Gaps = 5/176 (2%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPR-GTHPL 374
FGT + +Y +D H AGL V+LD V H + L EFDGT + H PR G H
Sbjct: 201 FGTRDDFRYFIDAAHAAGLNVILDWVPGHFPTDDF-ALAEFDGTN-LYEHSDPREGYHQD 258
Query: 375 WDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYF 434
W++ ++NY EV FL+ N ++++ + D R D V SM+Y ++ EG F
Sbjct: 259 WNTLIYNYGRREVSNFLVGNALYWIERFGIDALRVDAVASMIYRDYSRKEG--EWIPNEF 316
Query: 435 GLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLEI 490
G + +A+ +L N+ L ++ +T+AE+ + P RP GG GF Y+ +
Sbjct: 317 GGRENLEAIEFLRNTNRILGEQVSGAVTMAEESTDFPGVSRPQDMGGLGFWYKWNL 372
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 579 HRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLP 631
+R G+ Q GK++ +L++D H+ G N + GTV+ + R++S+ L LP
Sbjct: 554 YRFGINQPGKWREILNTDSMHYHGSNAGNGGTVHSDEIAS-HGRQHSLSLTLP 605
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 1214 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLP 1265
R G+ Q GK++ +L++D H+ G N + GTV+ + R++S+ L LP
Sbjct: 555 RFGINQPGKWREILNTDSMHYHGSNAGNGGTVHSDEIAS-HGRQHSLSLTLP 605
Score = 30.0 bits (66), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 723 GYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 754
G+ ++L+ I EH + S+GYQ T +A + R
Sbjct: 169 GFTHLELLPINEHPFDGSWGYQPTGLYAPTRR 200
>pdb|1EHA|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase From
Sulfolobus Solfataricus
Length = 558
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 36/116 (31%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTH--- 1085
+G PE + LVDE HK GL V+LDVV++H GP G +
Sbjct: 164 YGGPEGFRKLVDEAHKKGLGVILDVVYNHV---------------------GPEGNYMVK 202
Query: 1086 --PLWDSR-------LFNYSEI---EVLRFLLSNLRWYLEEYQFDGFRFDGVTSML 1129
P + + FN+ + EV +F+L N+ ++++EY DGFR D V +++
Sbjct: 203 LGPYFSQKYKTPWGLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLDAVHAII 258
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 36/116 (31%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTH--- 372
+G PE + LVDE HK GL V+LDVV++H GP G +
Sbjct: 164 YGGPEGFRKLVDEAHKKGLGVILDVVYNHV---------------------GPEGNYMVK 202
Query: 373 --PLWDSR-------LFNYSEI---EVLRFLLSNLRWYLDEYQFDGFRFDGVTSML 416
P + + FN+ + EV +F+L N+ +++ EY DGFR D V +++
Sbjct: 203 LGPYFSQKYKTPWGLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLDAVHAII 258
>pdb|1EH9|A Chain A, Crystal Structure Of Sulfolobus Solfataricus
Glycosyltrehalose Trehalohydrolase
pdb|3VGB|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(Gthase) From Sulfolobus Solfataricus Km1
Length = 558
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 36/116 (31%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTH--- 1085
+G PE + LVDE HK GL V+LDVV++H GP G +
Sbjct: 164 YGGPEGFRKLVDEAHKKGLGVILDVVYNHV---------------------GPEGNYMVK 202
Query: 1086 --PLWDSR-------LFNYSEI---EVLRFLLSNLRWYLEEYQFDGFRFDGVTSML 1129
P + + FN+ + EV +F+L N+ ++++EY DGFR D V +++
Sbjct: 203 LGPYFSQKYKTPWGLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLDAVHAII 258
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 36/116 (31%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTH--- 372
+G PE + LVDE HK GL V+LDVV++H GP G +
Sbjct: 164 YGGPEGFRKLVDEAHKKGLGVILDVVYNHV---------------------GPEGNYMVK 202
Query: 373 --PLWDSR-------LFNYSEI---EVLRFLLSNLRWYLDEYQFDGFRFDGVTSML 416
P + + FN+ + EV +F+L N+ +++ EY DGFR D V +++
Sbjct: 203 LGPYFSQKYKTPWGLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLDAVHAII 258
>pdb|3VGG|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(E283q) Complexed With Maltoheptaose
pdb|3VGH|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(E283q) Complexed With Maltotriosyltrehalose
Length = 558
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 36/116 (31%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTH--- 1085
+G PE + LVDE HK GL V+LDVV++H GP G +
Sbjct: 164 YGGPEGFRKLVDEAHKKGLGVILDVVYNHV---------------------GPEGNYMVK 202
Query: 1086 --PLWDSR-------LFNYSEI---EVLRFLLSNLRWYLEEYQFDGFRFDGVTSML 1129
P + + FN+ + EV +F+L N+ ++++EY DGFR D V +++
Sbjct: 203 LGPYFSQKYKTPWGLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLDAVHAII 258
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 36/116 (31%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTH--- 372
+G PE + LVDE HK GL V+LDVV++H GP G +
Sbjct: 164 YGGPEGFRKLVDEAHKKGLGVILDVVYNHV---------------------GPEGNYMVK 202
Query: 373 --PLWDSR-------LFNYSEI---EVLRFLLSNLRWYLDEYQFDGFRFDGVTSML 416
P + + FN+ + EV +F+L N+ +++ EY DGFR D V +++
Sbjct: 203 LGPYFSQKYKTPWGLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLDAVHAII 258
>pdb|3VGD|A Chain A, Ctystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252e)
Length = 558
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 36/116 (31%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTH--- 1085
+G PE + LVDE HK GL V+LDVV++H GP G +
Sbjct: 164 YGGPEGFRKLVDEAHKKGLGVILDVVYNHV---------------------GPEGNYMVK 202
Query: 1086 --PLWDSR-------LFNYSEI---EVLRFLLSNLRWYLEEYQFDGFRFDGVTSML 1129
P + + FN+ + EV +F+L N+ ++++EY DGFR + V +++
Sbjct: 203 LGPYFSQKYKTPWGLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLEAVHAII 258
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 36/116 (31%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTH--- 372
+G PE + LVDE HK GL V+LDVV++H GP G +
Sbjct: 164 YGGPEGFRKLVDEAHKKGLGVILDVVYNHV---------------------GPEGNYMVK 202
Query: 373 --PLWDSR-------LFNYSEI---EVLRFLLSNLRWYLDEYQFDGFRFDGVTSML 416
P + + FN+ + EV +F+L N+ +++ EY DGFR + V +++
Sbjct: 203 LGPYFSQKYKTPWGLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLEAVHAII 258
>pdb|3VGE|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252s)
pdb|3VGF|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252s) Complexed With Maltotriosyltrehalose
Length = 558
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 36/116 (31%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTH--- 1085
+G PE + LVDE HK GL V+LDVV++H GP G +
Sbjct: 164 YGGPEGFRKLVDEAHKKGLGVILDVVYNHV---------------------GPEGNYMVK 202
Query: 1086 --PLWDSR-------LFNYSEI---EVLRFLLSNLRWYLEEYQFDGFRFDGVTSML 1129
P + + FN+ + EV +F+L N+ ++++EY DGFR V +++
Sbjct: 203 LGPYFSQKYKTPWGLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLSAVHAII 258
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 36/116 (31%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTH--- 372
+G PE + LVDE HK GL V+LDVV++H GP G +
Sbjct: 164 YGGPEGFRKLVDEAHKKGLGVILDVVYNHV---------------------GPEGNYMVK 202
Query: 373 --PLWDSR-------LFNYSEI---EVLRFLLSNLRWYLDEYQFDGFRFDGVTSML 416
P + + FN+ + EV +F+L N+ +++ EY DGFR V +++
Sbjct: 203 LGPYFSQKYKTPWGLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLSAVHAII 258
>pdb|2BHU|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase
Length = 602
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 8/100 (8%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1088
+G PE L LVD H+ GL V LDVV++H + N +F D W
Sbjct: 189 YGRPEDLMALVDAAHRLGLGVFLDVVYNHFGPSG----NYLSSYAPSYFTD---RFSSAW 241
Query: 1089 DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSM 1128
L +Y+E + R++ N R +L +Y FDG R D M
Sbjct: 242 GMGL-DYAEPHMRRYVTGNARMWLRDYHFDGLRLDATPYM 280
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 8/100 (8%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 375
+G PE L LVD H+ GL V LDVV++H + N +F D W
Sbjct: 189 YGRPEDLMALVDAAHRLGLGVFLDVVYNHFGPSG----NYLSSYAPSYFTD---RFSSAW 241
Query: 376 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM 415
L +Y+E + R++ N R +L +Y FDG R D M
Sbjct: 242 GMGL-DYAEPHMRRYVTGNARMWLRDYHFDGLRLDATPYM 280
>pdb|2BHY|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase In Complex With
Trehalose
pdb|2BHZ|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase In Complex With
Maltose
pdb|2BXY|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BXZ|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY0|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY1|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY2|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY3|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
Length = 602
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1088
+G PE L LVD H+ GL V LDVV++H + N +F D W
Sbjct: 189 YGRPEDLXALVDAAHRLGLGVFLDVVYNHFGPSG----NYLSSYAPSYFTD---RFSSAW 241
Query: 1089 DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 1123
L +Y+E R++ N R +L +Y FDG R D
Sbjct: 242 GXGL-DYAEPHXRRYVTGNARXWLRDYHFDGLRLD 275
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 375
+G PE L LVD H+ GL V LDVV++H + N +F D W
Sbjct: 189 YGRPEDLXALVDAAHRLGLGVFLDVVYNHFGPSG----NYLSSYAPSYFTD---RFSSAW 241
Query: 376 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 410
L +Y+E R++ N R +L +Y FDG R D
Sbjct: 242 GXGL-DYAEPHXRRYVTGNARXWLRDYHFDGLRLD 275
>pdb|2VNC|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VNC|B Chain B, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VR5|A Chain A, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VR5|B Chain B, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VUY|A Chain A, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
pdb|2VUY|B Chain B, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
Length = 718
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 9/140 (6%)
Query: 285 DPSLIIDRACEKFGTPEQLKYLVDECHKAG---LFGTPEQLKYLVDECHKAGLYVLLDVV 341
D + D+ + + + + EC + L G K +V+E H AG+ V++DVV
Sbjct: 229 DQRFLTDKGLTNYWGYDPINFFSPECRYSSTGCLGGQVLSFKKMVNELHNAGIEVIIDVV 288
Query: 342 HSH-ASKNVLDGLNEFDGT-QACFFHDGPRGTHPLWD----SRLFNYSEIEVLRFLLSNL 395
++H A N L F G ++ P D N S V++ +L +L
Sbjct: 289 YNHTAEGNHLGPTLSFRGIDNTAYYMLQPDNKRYYLDFTGTGNTLNLSHPRVIQMVLDSL 348
Query: 396 RWYLDEYQFDGFRFDGVTSM 415
R+++ E DGFRFD ++
Sbjct: 349 RYWVTEMHVDGFRFDLAAAL 368
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 81/197 (41%), Gaps = 22/197 (11%)
Query: 942 FGKWELVLPPNPDGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLV--- 998
F K L LP N G + E+ D G + L P + H + +
Sbjct: 184 FTKLRLDLPENIRGTYEGLASEQMISYLKDLGITTVELMP-------VFHFIDQRFLTDK 236
Query: 999 -VRNQHGHLLDRFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSH 1057
+ N G+ F +PE +Y C L G K +V+E H AG+ V++DVV++H
Sbjct: 237 GLTNYWGYDPINFFSPE-CRYSSTGC----LGGQVLSFKKMVNELHNAGIEVIIDVVYNH 291
Query: 1058 -ASKNVLDGLNEFDGT-QACFFHDGPRGTHPLWD----SRLFNYSEIEVLRFLLSNLRWY 1111
A N L F G ++ P D N S V++ +L +LR++
Sbjct: 292 TAEGNHLGPTLSFRGIDNTAYYMLQPDNKRYYLDFTGTGNTLNLSHPRVIQMVLDSLRYW 351
Query: 1112 LEEYQFDGFRFDGVTSM 1128
+ E DGFRFD ++
Sbjct: 352 VTEMHVDGFRFDLAAAL 368
>pdb|4GKL|A Chain A, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
pdb|4GKL|B Chain B, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
Length = 422
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 10/101 (9%)
Query: 1028 LFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS-KNVLDGLNEFDGTQACFFHD---GPRG 1083
L GT K V H+ +YVL+D+V +HA+ NVL F D P
Sbjct: 74 LIGTKGDFKKFVKRAHELNMYVLMDMVLNHAAVDNVL-----VKKHPEWFLRDENGNPTR 128
Query: 1084 THPLW-DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 1123
P W D F+YS E+ ++++ +R+++EE+ DGFR D
Sbjct: 129 KVPDWSDVVDFDYSNGELREYMINMMRYWVEEFDVDGFRCD 169
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 10/101 (9%)
Query: 315 LFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS-KNVLDGLNEFDGTQACFFHD---GPRG 370
L GT K V H+ +YVL+D+V +HA+ NVL F D P
Sbjct: 74 LIGTKGDFKKFVKRAHELNMYVLMDMVLNHAAVDNVL-----VKKHPEWFLRDENGNPTR 128
Query: 371 THPLW-DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 410
P W D F+YS E+ ++++ +R++++E+ DGFR D
Sbjct: 129 KVPDWSDVVDFDYSNGELREYMINMMRYWVEEFDVDGFRCD 169
>pdb|2YA0|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 714
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 19/98 (19%)
Query: 321 QLKYLVDECHKAGLYVLLDVVHSHASK-NVLDGLN-------EFDGTQACFFHDGPRGTH 372
+ K L++E HK G+ +LDVV++H +K ++ + L + DGT F G GT
Sbjct: 256 EFKNLINEIHKRGMGAILDVVYNHTAKVDLFEDLEPNYYHFMDADGTPRTSFGGGRLGTT 315
Query: 373 PLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 410
RL L+ ++++ +D Y+ DGFRFD
Sbjct: 316 HHMTKRL-----------LIDSIKYLVDTYKVDGFRFD 342
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 19/98 (19%)
Query: 1034 QLKYLVDECHKAGLYVLLDVVHSHASK-NVLDGLN-------EFDGTQACFFHDGPRGTH 1085
+ K L++E HK G+ +LDVV++H +K ++ + L + DGT F G GT
Sbjct: 256 EFKNLINEIHKRGMGAILDVVYNHTAKVDLFEDLEPNYYHFMDADGTPRTSFGGGRLGTT 315
Query: 1086 PLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 1123
RL L+ ++++ ++ Y+ DGFRFD
Sbjct: 316 HHMTKRL-----------LIDSIKYLVDTYKVDGFRFD 342
>pdb|2YA2|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua In Complex With An
Inhibitor
Length = 708
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 19/98 (19%)
Query: 321 QLKYLVDECHKAGLYVLLDVVHSHASK-NVLDGLN-------EFDGTQACFFHDGPRGTH 372
+ K L++E HK G+ +LDVV++H +K ++ + L + DGT F G GT
Sbjct: 257 EFKNLINEIHKRGMGAILDVVYNHTAKVDLFEDLEPNYYHFMDADGTPRTSFGGGRLGTT 316
Query: 373 PLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 410
RL L+ ++++ +D Y+ DGFRFD
Sbjct: 317 HHMTKRL-----------LIDSIKYLVDTYKVDGFRFD 343
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 19/98 (19%)
Query: 1034 QLKYLVDECHKAGLYVLLDVVHSHASK-NVLDGLN-------EFDGTQACFFHDGPRGTH 1085
+ K L++E HK G+ +LDVV++H +K ++ + L + DGT F G GT
Sbjct: 257 EFKNLINEIHKRGMGAILDVVYNHTAKVDLFEDLEPNYYHFMDADGTPRTSFGGGRLGTT 316
Query: 1086 PLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 1123
RL L+ ++++ ++ Y+ DGFRFD
Sbjct: 317 HHMTKRL-----------LIDSIKYLVDTYKVDGFRFD 343
>pdb|2YA1|A Chain A, Product Complex Of A Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 1014
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 19/98 (19%)
Query: 321 QLKYLVDECHKAGLYVLLDVVHSHASK-NVLDGLN-------EFDGTQACFFHDGPRGTH 372
+ K L++E HK G+ +LDVV++H +K ++ + L + DGT F G GT
Sbjct: 563 EFKNLINEIHKRGMGAILDVVYNHTAKVDLFEDLEPNYYHFMDADGTPRTSFGGGRLGT- 621
Query: 373 PLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 410
+ R L+ ++++ +D Y+ DGFRFD
Sbjct: 622 ----------THHMTKRLLIDSIKYLVDTYKVDGFRFD 649
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 19/98 (19%)
Query: 1034 QLKYLVDECHKAGLYVLLDVVHSHASK-NVLDGLN-------EFDGTQACFFHDGPRGTH 1085
+ K L++E HK G+ +LDVV++H +K ++ + L + DGT F G GT
Sbjct: 563 EFKNLINEIHKRGMGAILDVVYNHTAKVDLFEDLEPNYYHFMDADGTPRTSFGGGRLGT- 621
Query: 1086 PLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 1123
+ R L+ ++++ ++ Y+ DGFRFD
Sbjct: 622 ----------THHMTKRLLIDSIKYLVDTYKVDGFRFD 649
>pdb|3FAW|A Chain A, Crystal Structure Of The Group B Streptococcus Pullulanase
Sap
pdb|3FAX|A Chain A, The Crystal Structure Of Gbs Pullulanase Sap In Complex With
Maltotetraose
Length = 877
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 13/95 (13%)
Query: 1034 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFH----DG-PRGTHPLW 1088
+LK L+ + HK G+ V+LDVV++H +K L F+ + ++H DG PR
Sbjct: 371 ELKQLIHDIHKRGMGVILDVVYNHTAKTYL-----FEDIEPNYYHFMNEDGSPR--ESFG 423
Query: 1089 DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 1123
RL + R L+ ++++ E++ DGFRFD
Sbjct: 424 GGRLGTTHAMS-RRVLVDSIKYLTSEFKVDGFRFD 457
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 13/95 (13%)
Query: 321 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFH----DG-PRGTHPLW 375
+LK L+ + HK G+ V+LDVV++H +K L F+ + ++H DG PR
Sbjct: 371 ELKQLIHDIHKRGMGVILDVVYNHTAKTYL-----FEDIEPNYYHFMNEDGSPR--ESFG 423
Query: 376 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 410
RL + R L+ ++++ E++ DGFRFD
Sbjct: 424 GGRLGTTHAMS-RRVLVDSIKYLTSEFKVDGFRFD 457
>pdb|1J0H|A Chain A, Crystal Structure Of Bacillus Stearothermophilus
Neopullulanase
pdb|1J0H|B Chain B, Crystal Structure Of Bacillus Stearothermophilus
Neopullulanase
pdb|1J0I|A Chain A, Crystal Structure Of Neopullulanase Complex With Panose
pdb|1J0I|B Chain B, Crystal Structure Of Neopullulanase Complex With Panose
Length = 588
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 16/130 (12%)
Query: 1010 FGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNE 1068
F +P KY D FG E LK L+D CH+ G+ V+LD V +H +
Sbjct: 199 FRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVMLDAVFNHCGYEFAPFQDV 258
Query: 1069 FDGTQACFF------HDGPRGTHPL--WDSRLF-------NYSEIEVLRFLLSNLRWYLE 1113
+ ++ + H+ P T P +D+ F N + EV R+LL +++
Sbjct: 259 WKNGESSKYKDWFHIHEFPLQTEPRPNYDTFAFVPQMPKLNTANPEVKRYLLDVATYWIR 318
Query: 1114 EYQFDGFRFD 1123
E+ DG+R D
Sbjct: 319 EFDIDGWRLD 328
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 16/148 (10%)
Query: 279 HMSTLSDPSLIIDRACEKFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVL 337
H+ L D + F +P KY D FG E LK L+D CH+ G+ V+
Sbjct: 181 HLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVM 240
Query: 338 LDVVHSHASKNVLDGLNEFDGTQACFF------HDGPRGTHPL--WDSRLF-------NY 382
LD V +H + + ++ + H+ P T P +D+ F N
Sbjct: 241 LDAVFNHCGYEFAPFQDVWKNGESSKYKDWFHIHEFPLQTEPRPNYDTFAFVPQMPKLNT 300
Query: 383 SEIEVLRFLLSNLRWYLDEYQFDGFRFD 410
+ EV R+LL +++ E+ DG+R D
Sbjct: 301 ANPEVKRYLLDVATYWIREFDIDGWRLD 328
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 15 GTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAG 69
G + L YLVD + +F +P KY D FG E LK L+D CH+ G
Sbjct: 177 GIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHEKG 236
Query: 70 LLCFMHVV 77
+ + V
Sbjct: 237 IRVMLDAV 244
>pdb|1J0J|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
Maltotetraose
pdb|1J0J|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
Maltotetraose
pdb|1J0K|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
Isopanose
pdb|1J0K|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
Isopanose
Length = 588
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 16/130 (12%)
Query: 1010 FGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNE 1068
F +P KY D FG E LK L+D CH+ G+ V+LD V +H +
Sbjct: 199 FRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVMLDAVFNHCGYEFAPFQDV 258
Query: 1069 FDGTQACFF------HDGPRGTHPL--WDSRLF-------NYSEIEVLRFLLSNLRWYLE 1113
+ ++ + H+ P T P +D+ F N + EV R+LL +++
Sbjct: 259 WKNGESSKYKDWFHIHEFPLQTEPRPNYDTFAFVPQMPKLNTANPEVKRYLLDVATYWIR 318
Query: 1114 EYQFDGFRFD 1123
E+ DG+R D
Sbjct: 319 EFDIDGWRLD 328
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 16/148 (10%)
Query: 279 HMSTLSDPSLIIDRACEKFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVL 337
H+ L D + F +P KY D FG E LK L+D CH+ G+ V+
Sbjct: 181 HLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVM 240
Query: 338 LDVVHSHASKNVLDGLNEFDGTQACFF------HDGPRGTHPL--WDSRLF-------NY 382
LD V +H + + ++ + H+ P T P +D+ F N
Sbjct: 241 LDAVFNHCGYEFAPFQDVWKNGESSKYKDWFHIHEFPLQTEPRPNYDTFAFVPQMPKLNT 300
Query: 383 SEIEVLRFLLSNLRWYLDEYQFDGFRFD 410
+ EV R+LL +++ E+ DG+R D
Sbjct: 301 ANPEVKRYLLDVATYWIREFDIDGWRLD 328
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 15 GTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAG 69
G + L YLVD + +F +P KY D FG E LK L+D CH+ G
Sbjct: 177 GIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHEKG 236
Query: 70 LLCFMHVV 77
+ + V
Sbjct: 237 IRVMLDAV 244
>pdb|3M07|A Chain A, 1.4 Angstrom Resolution Crystal Structure Of Putative Alpha
Amylase From Salmonella Typhimurium
Length = 618
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 8/100 (8%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1088
+GTP+ K +D H GL V+LD+V +H N FFH + W
Sbjct: 199 YGTPDDFKAFIDAAHGYGLSVVLDIVLNHFGPEG----NYLPLLAPAFFH---KERMTPW 251
Query: 1089 DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSM 1128
+ + Y V R+++ ++L EY DG RFD + +
Sbjct: 252 GNGI-AYDVDAVRRYIIEAPLYWLTEYHLDGLRFDAIDQI 290
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 8/100 (8%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 375
+GTP+ K +D H GL V+LD+V +H N FFH + W
Sbjct: 199 YGTPDDFKAFIDAAHGYGLSVVLDIVLNHFGPEG----NYLPLLAPAFFH---KERMTPW 251
Query: 376 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM 415
+ + Y V R+++ ++L EY DG RFD + +
Sbjct: 252 GNGI-AYDVDAVRRYIIEAPLYWLTEYHLDGLRFDAIDQI 290
>pdb|1GVI|A Chain A, Thermus Maltogenic Amylase In Complex With Beta-Cd
pdb|1GVI|B Chain B, Thermus Maltogenic Amylase In Complex With Beta-Cd
Length = 588
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 59/148 (39%), Gaps = 16/148 (10%)
Query: 279 HMSTLSDPSLIIDRACEKFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVL 337
H+ L+D + F P KY D FG E LK LV CH+ G+ V+
Sbjct: 181 HLDYLADLGITGIYLTPIFRAPSNHKYDTADYFEIDPHFGDKETLKTLVKRCHEKGIRVM 240
Query: 338 LDVVHSHASKNVLDGLNEFDGTQACFFHDG------PRGTHPL--WDSRLF-------NY 382
LD V +H + A + D P T P +D+ F N
Sbjct: 241 LDAVFNHCGYEFAPFQDVLKNGAASRYKDWFHIREFPLQTEPRPNYDTFAFVPHMPKLNT 300
Query: 383 SEIEVLRFLLSNLRWYLDEYQFDGFRFD 410
+ EV R+LL +++ E+ DG+R D
Sbjct: 301 AHPEVKRYLLDVATYWIREFDIDGWRLD 328
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 48/110 (43%), Gaps = 15/110 (13%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDG------PR 1082
FG E LK LV CH+ G+ V+LD V +H + A + D P
Sbjct: 219 FGDKETLKTLVKRCHEKGIRVMLDAVFNHCGYEFAPFQDVLKNGAASRYKDWFHIREFPL 278
Query: 1083 GTHPL--WDSRLF-------NYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 1123
T P +D+ F N + EV R+LL +++ E+ DG+R D
Sbjct: 279 QTEPRPNYDTFAFVPHMPKLNTAHPEVKRYLLDVATYWIREFDIDGWRLD 328
>pdb|1SMA|A Chain A, Crystal Structure Of A Maltogenic Amylase
pdb|1SMA|B Chain B, Crystal Structure Of A Maltogenic Amylase
Length = 588
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 59/148 (39%), Gaps = 16/148 (10%)
Query: 279 HMSTLSDPSLIIDRACEKFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVL 337
H+ L+D + F P KY D FG E LK LV CH+ G+ V+
Sbjct: 181 HLDYLADLGITGIYLTPIFRAPSNHKYDTADYFEIDPHFGDKETLKTLVKRCHEKGIRVM 240
Query: 338 LDVVHSHASKNVLDGLNEFDGTQACFFHDG------PRGTHPL--WDSRLF-------NY 382
LD V +H + A + D P T P +D+ F N
Sbjct: 241 LDAVFNHCGYEFAPFQDVLKNGAASRYKDWFHIREFPLQTEPRPNYDTFAFVPHMPKLNT 300
Query: 383 SEIEVLRFLLSNLRWYLDEYQFDGFRFD 410
+ EV R+LL +++ E+ DG+R D
Sbjct: 301 AHPEVKRYLLDVATYWIREFDIDGWRLD 328
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 48/110 (43%), Gaps = 15/110 (13%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDG------PR 1082
FG E LK LV CH+ G+ V+LD V +H + A + D P
Sbjct: 219 FGDKETLKTLVKRCHEKGIRVMLDAVFNHCGYEFAPFQDVLKNGAASRYKDWFHIREFPL 278
Query: 1083 GTHPL--WDSRLF-------NYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 1123
T P +D+ F N + EV R+LL +++ E+ DG+R D
Sbjct: 279 QTEPRPNYDTFAFVPHMPKLNTAHPEVKRYLLDVATYWIREFDIDGWRLD 328
>pdb|2E8Y|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168
pdb|2E8Y|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168
pdb|2E8Z|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Alpha-Cyclodextrin
pdb|2E8Z|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Alpha-Cyclodextrin
pdb|2E9B|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Maltose
pdb|2E9B|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Maltose
Length = 718
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 1034 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLF 1093
+LK +++ H+ GL V+LDVV +H K + F+ T +F P + +
Sbjct: 317 ELKQMINTLHQHGLRVILDVVFNHVYKR---ENSPFEKTVPGYFFRHDECGKPSNGTGVG 373
Query: 1094 N--YSEIEVLR-FLLSNLRWYLEEYQFDGFRFD 1123
N SE + R F+ + ++LEEY DGFRFD
Sbjct: 374 NDIASERRMARKFIADCVVYWLEEYNVDGFRFD 406
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 321 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLF 380
+LK +++ H+ GL V+LDVV +H K + F+ T +F P + +
Sbjct: 317 ELKQMINTLHQHGLRVILDVVFNHVYKR---ENSPFEKTVPGYFFRHDECGKPSNGTGVG 373
Query: 381 N--YSEIEVLR-FLLSNLRWYLDEYQFDGFRFD 410
N SE + R F+ + ++L+EY DGFRFD
Sbjct: 374 NDIASERRMARKFIADCVVYWLEEYNVDGFRFD 406
>pdb|2WSK|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Glgx From
Escherichia Coli K-12
Length = 657
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 1033 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG----LNEFDGTQACFFHDGPRGTHPLW 1088
++ + + HKAG+ V+LD+V +H+++ LDG L D + + G + W
Sbjct: 242 DEFRDAIKALHKAGIEVILDIVLNHSAELDLDGPLFSLRGIDNRSYYWIRE--DGDYHNW 299
Query: 1089 D--SRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSM 1128
N S V+ + + LR+++E DGFRFD M
Sbjct: 300 TGCGNTLNLSHPAVVDYASACLRYWVETCHVDGFRFDLAAVM 341
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 320 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG----LNEFDGTQACFFHDGPRGTHPLW 375
++ + + HKAG+ V+LD+V +H+++ LDG L D + + G + W
Sbjct: 242 DEFRDAIKALHKAGIEVILDIVLNHSAELDLDGPLFSLRGIDNRSYYWIRE--DGDYHNW 299
Query: 376 D--SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM 415
N S V+ + + LR++++ DGFRFD M
Sbjct: 300 TGCGNTLNLSHPAVVDYASACLRYWVETCHVDGFRFDLAAVM 341
>pdb|1EA9|C Chain C, Cyclomaltodextrinase
pdb|1EA9|D Chain D, Cyclomaltodextrinase
Length = 583
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 24/115 (20%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLDGLNEFDGTQ-ACFFH------ 1078
FG + LK LVD CH+ G+ VLLD V +H+ + +D L + ++ +FH
Sbjct: 215 FGDKDTLKKLVDLCHERGIRVLLDAVFNHSGRTFPPFVDVLKNGEKSKYKDWFHIRSLPL 274
Query: 1079 ---DGPRGTHPLWDSRLF-------NYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 1123
DG P +D+ F N +V +LL +++ E DG+R D
Sbjct: 275 EVVDGI----PTYDTFAFEPLMPKLNTEHPDVKEYLLKAAEYWIRETGIDGWRLD 325
Score = 38.5 bits (88), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 24/115 (20%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLDGLNEFDGTQ-ACFFH------ 365
FG + LK LVD CH+ G+ VLLD V +H+ + +D L + ++ +FH
Sbjct: 215 FGDKDTLKKLVDLCHERGIRVLLDAVFNHSGRTFPPFVDVLKNGEKSKYKDWFHIRSLPL 274
Query: 366 ---DGPRGTHPLWDSRLF-------NYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 410
DG P +D+ F N +V +LL +++ E DG+R D
Sbjct: 275 EVVDGI----PTYDTFAFEPLMPKLNTEHPDVKEYLLKAAEYWIRETGIDGWRLD 325
>pdb|2ZE0|A Chain A, Alpha-glucosidase Gsj
Length = 555
Score = 37.0 bits (84), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 32/131 (24%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLDGLNEFDGTQACFF--HDGPRG 370
FGT + L+ + H+ GL V+LD+V +H S ++ + D + ++ DG G
Sbjct: 75 FGTMDDFDELLAQAHRRGLKVILDLVINHTSDEHPWFIESRSSRDNPKRDWYIWRDGKDG 134
Query: 371 THP-LWDSRL-------------------------FNYSEIEVLRFLLSNLRWYLDEYQF 404
P W+S N+ EV + L + W+LD+
Sbjct: 135 REPNNWESIFGGSAWQYDERTGQYYLHIFDVKQPDLNWENSEVRQALYEMVNWWLDK-GI 193
Query: 405 DGFRFDGVTSM 415
DGFR D ++ +
Sbjct: 194 DGFRIDAISHI 204
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 54/131 (41%), Gaps = 32/131 (24%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLDGLNEFDGTQACFF--HDGPRG 1083
FGT + L+ + H+ GL V+LD+V +H S ++ + D + ++ DG G
Sbjct: 75 FGTMDDFDELLAQAHRRGLKVILDLVINHTSDEHPWFIESRSSRDNPKRDWYIWRDGKDG 134
Query: 1084 THP-LWDSRL-------------------------FNYSEIEVLRFLLSNLRWYLEEYQF 1117
P W+S N+ EV + L + W+L++
Sbjct: 135 REPNNWESIFGGSAWQYDERTGQYYLHIFDVKQPDLNWENSEVRQALYEMVNWWLDK-GI 193
Query: 1118 DGFRFDGVTSM 1128
DGFR D ++ +
Sbjct: 194 DGFRIDAISHI 204
>pdb|2WAN|A Chain A, Pullulanase From Bacillus Acidopullulyticus
Length = 921
Score = 37.0 bits (84), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 6/93 (6%)
Query: 321 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLF 380
+LK L+ H+ + V +DVV++H + +V+ +++FD +++ + S
Sbjct: 533 ELKQLIQSLHQQRIGVNMDVVYNH-TFDVM--VSDFDKIVPQYYYRTDSNGNYTNGSGXG 589
Query: 381 NYSEIE---VLRFLLSNLRWYLDEYQFDGFRFD 410
N E +F+L ++ ++++EY DGFRFD
Sbjct: 590 NEFATEHPMAQKFVLDSVNYWVNEYHVDGFRFD 622
Score = 36.6 bits (83), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 1034 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLF 1093
+LK L+ H+ + V +DVV++H + +V+ +++FD +++ + S
Sbjct: 533 ELKQLIQSLHQQRIGVNMDVVYNH-TFDVM--VSDFDKIVPQYYYRTDSNGNYTNGSGXG 589
Query: 1094 NYSEIE---VLRFLLSNLRWYLEEYQFDGFRFD 1123
N E +F+L ++ +++ EY DGFRFD
Sbjct: 590 NEFATEHPMAQKFVLDSVNYWVNEYHVDGFRFD 622
>pdb|1BF2|A Chain A, Structure Of Pseudomonas Isoamylase
Length = 750
Score = 35.0 bits (79), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/136 (19%), Positives = 58/136 (42%), Gaps = 17/136 (12%)
Query: 1000 RNQHGHLLDRFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSH-- 1057
+N G++ + + +P++ +Y ++ G + + +V H AG+ V +DVV++H
Sbjct: 245 QNYWGYMTENYFSPDR-RYAYNKAAG----GPTAEFQAMVQAFHNAGIKVYMDVVYNHTA 299
Query: 1058 ------ASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRL----FNYSEIEVLRFLLSN 1107
+S + + G +++ G +D+ FN ++ +
Sbjct: 300 EGGTWTSSDPTTATIYSWRGLDNATYYELTSGNQYFYDNTGIGANFNTYNTVAQNLIVDS 359
Query: 1108 LRWYLEEYQFDGFRFD 1123
L ++ DGFRFD
Sbjct: 360 LAYWANTMGVDGFRFD 375
Score = 33.1 bits (74), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 12/106 (11%)
Query: 317 GTPEQLKYLVDECHKAGLYVLLDVVHSH--------ASKNVLDGLNEFDGTQACFFHDGP 368
G + + +V H AG+ V +DVV++H +S + + G +++
Sbjct: 270 GPTAEFQAMVQAFHNAGIKVYMDVVYNHTAEGGTWTSSDPTTATIYSWRGLDNATYYELT 329
Query: 369 RGTHPLWDSRL----FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 410
G +D+ FN ++ +L ++ + DGFRFD
Sbjct: 330 SGNQYFYDNTGIGANFNTYNTVAQNLIVDSLAYWANTMGVDGFRFD 375
>pdb|2AAA|A Chain A, Calcium Binding In Alpha-Amylases: An X-Ray Diffraction
Study At 2.1 Angstroms Resolution Of Two Enzymes From
Aspergillus
Length = 484
Score = 34.3 bits (77), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSH 344
FGT + LK L D H G+Y+++DVV H
Sbjct: 94 FGTADNLKSLSDALHARGMYLMVDVVPDH 122
Score = 34.3 bits (77), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSH 1057
FGT + LK L D H G+Y+++DVV H
Sbjct: 94 FGTADNLKSLSDALHARGMYLMVDVVPDH 122
>pdb|1AVA|A Chain A, Amy2BASI PROTEIN-Protein Complex From Barley Seed
pdb|1AVA|B Chain B, Amy2BASI PROTEIN-Protein Complex From Barley Seed
pdb|1AMY|A Chain A, Crystal And Molecular Structure Of Barley Alpha-Amylase
pdb|1BG9|A Chain A, Barley Alpha-Amylase With Substrate Analogue Acarbose
Length = 403
Score = 33.9 bits (76), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 31/124 (25%)
Query: 1026 AGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTH 1085
A +G QLK L+ H G+ + D+V +H + DG + C F G
Sbjct: 61 ASKYGNKAQLKSLIGALHGKGVKAIADIVINHRTAEHKDGRGIY-----CIFEGGTPDAR 115
Query: 1086 PLW-------DSRLF-------------------NYSEIEVLRFLLSNLRWYLEEYQFDG 1119
W D R + ++ + V + L+ L W + FDG
Sbjct: 116 LDWGPHMICRDDRPYADGTGNPDTGADFGAAPDIDHLNLRVQKELVEWLNWLKADIGFDG 175
Query: 1120 FRFD 1123
+RFD
Sbjct: 176 WRFD 179
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 31/124 (25%)
Query: 313 AGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTH 372
A +G QLK L+ H G+ + D+V +H + DG + C F G
Sbjct: 61 ASKYGNKAQLKSLIGALHGKGVKAIADIVINHRTAEHKDGRGIY-----CIFEGGTPDAR 115
Query: 373 PLW-------DSRLF-------------------NYSEIEVLRFLLSNLRWYLDEYQFDG 406
W D R + ++ + V + L+ L W + FDG
Sbjct: 116 LDWGPHMICRDDRPYADGTGNPDTGADFGAAPDIDHLNLRVQKELVEWLNWLKADIGFDG 175
Query: 407 FRFD 410
+RFD
Sbjct: 176 WRFD 179
>pdb|3DHU|A Chain A, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|B Chain B, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|C Chain C, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|D Chain D, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
Length = 449
Score = 33.9 bits (76), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 39/174 (22%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 375
+GT K L D H+ G+ V+LD+V++H S + + + F+HD
Sbjct: 80 YGTLADFKALTDRAHELGMKVMLDIVYNHTSPDSVLATEHPE----WFYHDA-------- 127
Query: 376 DSRLFN----YSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYD 431
D +L N +S+++ L + L W +YQ D ++LY +S D
Sbjct: 128 DGQLTNKVGDWSDVKDLDYGHHEL-W---QYQID--------TLLY--------WSQFVD 167
Query: 432 EYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDV-SGMPASCRPVTEGGTGF 484
Y L + + A K ++ KYPE + +AE SG R ++G TG
Sbjct: 168 GYRCDVAPLVPLDFWLEARKQVNAKYPETLWLAESAGSGFIEELR--SQGYTGL 219
Score = 33.9 bits (76), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 39/174 (22%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1088
+GT K L D H+ G+ V+LD+V++H S + + + F+HD
Sbjct: 80 YGTLADFKALTDRAHELGMKVMLDIVYNHTSPDSVLATEHPE----WFYHDA-------- 127
Query: 1089 DSRLFN----YSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYD 1144
D +L N +S+++ L + L W +YQ D ++LY +S D
Sbjct: 128 DGQLTNKVGDWSDVKDLDYGHHEL-W---QYQID--------TLLY--------WSQFVD 167
Query: 1145 EYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDV-SGMPASCRPVTEGGTGF 1197
Y L + + A K ++ KYPE + +AE SG R ++G TG
Sbjct: 168 GYRCDVAPLVPLDFWLEARKQVNAKYPETLWLAESAGSGFIEELR--SQGYTGL 219
>pdb|1G1Y|A Chain A, Crystal Structure Of Alpha-Amylase Ii (Tvaii) From
Thermoactinomyces Vulgaris R-47 And Beta-Cyclodextrin
Complex
pdb|1G1Y|B Chain B, Crystal Structure Of Alpha-Amylase Ii (Tvaii) From
Thermoactinomyces Vulgaris R-47 And Beta-Cyclodextrin
Complex
Length = 585
Score = 33.5 bits (75), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 297 FGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHA 345
F +P KY D FG + LVDE H+ G+ ++LD V +HA
Sbjct: 196 FASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHA 245
Score = 33.5 bits (75), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 1010 FGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHA 1058
F +P KY D FG + LVDE H+ G+ ++LD V +HA
Sbjct: 196 FASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHA 245
>pdb|1VFM|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ALPHA-Cyclodextrin Complex
pdb|1VFM|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ALPHA-Cyclodextrin Complex
pdb|1VFO|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2BETA-Cyclodextrin Complex
pdb|1VFO|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2BETA-Cyclodextrin Complex
pdb|1VFU|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Amylase 2GAMMA-Cyclodextrin Complex
pdb|1VFU|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Amylase 2GAMMA-Cyclodextrin Complex
Length = 585
Score = 33.5 bits (75), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 297 FGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHA 345
F +P KY D FG + LVDE H+ G+ ++LD V +HA
Sbjct: 196 FASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHA 245
Score = 33.5 bits (75), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 1010 FGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHA 1058
F +P KY D FG + LVDE H+ G+ ++LD V +HA
Sbjct: 196 FASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHA 245
>pdb|1WZK|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt D465n
pdb|1WZK|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt D465n
Length = 585
Score = 33.5 bits (75), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 297 FGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHA 345
F +P KY D FG + LVDE H+ G+ ++LD V +HA
Sbjct: 196 FASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHA 245
Score = 33.5 bits (75), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 1010 FGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHA 1058
F +P KY D FG + LVDE H+ G+ ++LD V +HA
Sbjct: 196 FASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHA 245
>pdb|1JF5|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2 Mutant F286a
pdb|1JF5|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2 Mutant F286a
Length = 585
Score = 33.5 bits (75), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 297 FGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHA 345
F +P KY D FG + LVDE H+ G+ ++LD V +HA
Sbjct: 196 FASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHA 245
Score = 33.5 bits (75), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 1010 FGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHA 1058
F +P KY D FG + LVDE H+ G+ ++LD V +HA
Sbjct: 196 FASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHA 245
>pdb|1JF6|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Mutant F286y
pdb|1JF6|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Mutant F286y
Length = 585
Score = 33.5 bits (75), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 297 FGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHA 345
F +P KY D FG + LVDE H+ G+ ++LD V +HA
Sbjct: 196 FASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHA 245
Score = 33.5 bits (75), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 1010 FGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHA 1058
F +P KY D FG + LVDE H+ G+ ++LD V +HA
Sbjct: 196 FASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHA 245
>pdb|1JL8|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Beta-Cyclodextrin
Based On A Co- Crystallization With Methyl
Beta-Cyclodextrin
pdb|1JL8|B Chain B, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Beta-Cyclodextrin
Based On A Co- Crystallization With Methyl
Beta-Cyclodextrin
pdb|1JIB|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Maltotetraose Based
On A Crystal Soaked With Maltohexaose.
pdb|1JIB|B Chain B, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Maltotetraose Based
On A Crystal Soaked With Maltohexaose.
pdb|1VB9|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Ii (Tva Ii) Complexed With
Transglycosylated Product
pdb|1VB9|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Ii (Tva Ii) Complexed With
Transglycosylated Product
pdb|2D2O|A Chain A, Structure Of A Complex Of Thermoactinomyces Vulgaris R-47
Alpha-Amylase 2 With Maltohexaose Demonstrates The
Important Role Of Aromatic Residues At The Reducing End
Of The Substrate Binding Cleft
pdb|2D2O|B Chain B, Structure Of A Complex Of Thermoactinomyces Vulgaris R-47
Alpha-Amylase 2 With Maltohexaose Demonstrates The
Important Role Of Aromatic Residues At The Reducing End
Of The Substrate Binding Cleft
Length = 585
Score = 33.5 bits (75), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 297 FGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHA 345
F +P KY D FG + LVDE H+ G+ ++LD V +HA
Sbjct: 196 FASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHA 245
Score = 33.5 bits (75), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 1010 FGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHA 1058
F +P KY D FG + LVDE H+ G+ ++LD V +HA
Sbjct: 196 FASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHA 245
>pdb|1WZL|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt R469l
pdb|1WZL|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt R469l
Length = 585
Score = 33.5 bits (75), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 297 FGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHA 345
F +P KY D FG + LVDE H+ G+ ++LD V +HA
Sbjct: 196 FASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHA 245
Score = 33.5 bits (75), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 1010 FGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHA 1058
F +P KY D FG + LVDE H+ G+ ++LD V +HA
Sbjct: 196 FASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHA 245
>pdb|1BVZ|A Chain A, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris
R- 47
pdb|1BVZ|B Chain B, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris
R- 47
pdb|1JI2|A Chain A, Improved X-Ray Structure Of Thermoactinomyces Vulgaris
R-47 Alpha-Amylase 2
pdb|1JI2|B Chain B, Improved X-Ray Structure Of Thermoactinomyces Vulgaris
R-47 Alpha-Amylase 2
pdb|3A6O|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ACARBOSE COMPLEX
pdb|3A6O|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ACARBOSE COMPLEX
Length = 585
Score = 33.5 bits (75), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 297 FGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHA 345
F +P KY D FG + LVDE H+ G+ ++LD V +HA
Sbjct: 196 FASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHA 245
Score = 33.5 bits (75), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 1010 FGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHA 1058
F +P KY D FG + LVDE H+ G+ ++LD V +HA
Sbjct: 196 FASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHA 245
>pdb|1WZM|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii)
Mutatnt R469k
pdb|1WZM|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii)
Mutatnt R469k
Length = 585
Score = 33.5 bits (75), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 297 FGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHA 345
F +P KY D FG + LVDE H+ G+ ++LD V +HA
Sbjct: 196 FASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHA 245
Score = 33.5 bits (75), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 1010 FGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHA 1058
F +P KY D FG + LVDE H+ G+ ++LD V +HA
Sbjct: 196 FASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHA 245
>pdb|2GB3|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|B Chain B, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|C Chain C, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|D Chain D, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|E Chain E, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|F Chain F, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
Length = 409
Score = 32.3 bits (72), Expect = 1.8, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 18/93 (19%)
Query: 977 LVLPP---NPDGSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKYLVDE----------C 1023
LVL P N + K+ + + + R + G F P+ L+ ++E C
Sbjct: 130 LVLEPFYANYNAFAKIAGVKLIPVTRRXEEG-----FAIPQNLESFINERTKGIVLSNPC 184
Query: 1024 HKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHS 1056
+ G+ ++ +YLV+ + GL++++D V+S
Sbjct: 185 NPTGVVYGKDEXRYLVEIAERHGLFLIVDEVYS 217
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Query: 289 IIDRACEKFGTPEQLKYLVDE----------CHKAGLFGTPEQLKYLVDECHKAGLYVLL 338
+ R E F P+ L+ ++E C+ G+ ++ +YLV+ + GL++++
Sbjct: 153 VTRRXEEGFAIPQNLESFINERTKGIVLSNPCNPTGVVYGKDEXRYLVEIAERHGLFLIV 212
Query: 339 DVVHS 343
D V+S
Sbjct: 213 DEVYS 217
>pdb|4CGT|A Chain A, Deletion Mutant Delta(145-150), F151d Of Cyclodextrin
Glycosyltransferase
Length = 678
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 19/118 (16%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDG----------TQACFFH 365
FGT + L+ H G+ +++D +H S + +D T F H
Sbjct: 112 FGTMADFQNLITTAHAKGIKIVIDFAPNHTSPADAENGRLYDNGTLVGGYTNDTNGYFHH 171
Query: 366 DG-------PRGTHP-LWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM 415
+G G + L+D FN++ + ++ ++ +LD DG R D V M
Sbjct: 172 NGGSDFSSLENGIYKNLYDLADFNHNNATIDKYFKDAIKLWLD-MGVDGIRVDAVKHM 228
Score = 30.4 bits (67), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 19/118 (16%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDG----------TQACFFH 1078
FGT + L+ H G+ +++D +H S + +D T F H
Sbjct: 112 FGTMADFQNLITTAHAKGIKIVIDFAPNHTSPADAENGRLYDNGTLVGGYTNDTNGYFHH 171
Query: 1079 DG-------PRGTHP-LWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSM 1128
+G G + L+D FN++ + ++ ++ +L + DG R D V M
Sbjct: 172 NGGSDFSSLENGIYKNLYDLADFNHNNATIDKYFKDAIKLWL-DMGVDGIRVDAVKHM 228
>pdb|2GUY|A Chain A, Orthorhombic Crystal Structure (Space Group P21212) Of
Aspergillus Niger Alpha-Amylase At 1.6 A Resolution
pdb|2GVY|A Chain A, Monoclinic Crystal Form Of Aspergillus Niger Alpha-Amylase
In Complex With Maltose At 1.8 A Resolution
pdb|2GVY|B Chain B, Monoclinic Crystal Form Of Aspergillus Niger Alpha-Amylase
In Complex With Maltose At 1.8 A Resolution
pdb|6TAA|A Chain A, Structure And Molecular Model Refinement Of Aspergillus
Oryzae (Taka) Alpha-Amylase: An Application Of The
Simulated-Annealing Method
pdb|7TAA|A Chain A, Family 13 Alpha Amylase In Complex With Acarbose
pdb|3KWX|A Chain A, Chemically Modified Taka Alpha-Amylase
Length = 478
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSH 344
+GT + LK L H+ G+Y+++DVV +H
Sbjct: 94 YGTADDLKALSSALHERGMYLMVDVVANH 122
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSH 1057
+GT + LK L H+ G+Y+++DVV +H
Sbjct: 94 YGTADDLKALSSALHERGMYLMVDVVANH 122
>pdb|2TAA|A Chain A, Structure And Possible Catalytic Residues Of Taka-Amylase
A
pdb|2TAA|B Chain B, Structure And Possible Catalytic Residues Of Taka-Amylase
A
pdb|2TAA|C Chain C, Structure And Possible Catalytic Residues Of Taka-Amylase
A
Length = 478
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSH 344
+GT + LK L H+ G+Y+++DVV +H
Sbjct: 94 YGTADDLKALSSALHERGMYLMVDVVANH 122
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSH 1057
+GT + LK L H+ G+Y+++DVV +H
Sbjct: 94 YGTADDLKALSSALHERGMYLMVDVVANH 122
>pdb|2Y4S|A Chain A, Barley Limit Dextrinase In Complex With Beta-Cyclodextrin
pdb|2Y5E|A Chain A, Barley Limit Dextrinase In Complex With Alpha-Cyclodextrin
pdb|4AIO|A Chain A, Crystal Structure Of The Starch Debranching Enzyme Barley
Limit Dextrinase
Length = 884
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 1034 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLF 1093
+ + +V ++ GL V++DVV++H + G++ ++ + +S
Sbjct: 380 EYRQMVQALNRIGLRVVMDVVYNHLDSSGPCGISSVLDKIVPGYYVRRDTNGQIENSAAM 439
Query: 1094 NYSEIE---VLRFLLSNLRWYLEEYQFDGFRFD 1123
N + E V R ++ +L + Y+ DGFRFD
Sbjct: 440 NNTASEHFMVDRLIVDDLLNWAVNYKVDGFRFD 472
>pdb|1D7F|A Chain A, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1D7F|B Chain B, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1DED|A Chain A, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
pdb|1DED|B Chain B, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
Length = 686
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 50/126 (39%), Gaps = 29/126 (23%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS------------------KNVLDGLNEFD 357
+GT + K L+D H + V++D +H S N+L G +
Sbjct: 112 YGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLYDNGNLLGGYT--N 169
Query: 358 GTQACFFHDG-------PRGTHP-LWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRF 409
TQ F H G G + L+D N++ V +L ++ +LD DG R
Sbjct: 170 DTQNLFHHYGGTDFSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMWLD-LGVDGIRV 228
Query: 410 DGVTSM 415
D V +M
Sbjct: 229 DAVKNM 234
>pdb|2OKX|A Chain A, Crystal Structure Of Gh78 Family Rhamnosidase Of Bacillus
Sp. Gl1 At 1.9 A
pdb|2OKX|B Chain B, Crystal Structure Of Gh78 Family Rhamnosidase Of Bacillus
Sp. Gl1 At 1.9 A
Length = 956
Score = 30.4 bits (67), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 582 GVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRN 624
+E+AG+ ++LD ++G R D T +E YP NR N
Sbjct: 810 ALEKAGRQTLMLDDIRRNYGQMLRYDATTCWEMYPNFAENRSN 852
Score = 30.4 bits (67), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 1216 GVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRN 1258
+E+AG+ ++LD ++G R D T +E YP NR N
Sbjct: 810 ALEKAGRQTLMLDDIRRNYGQMLRYDATTCWEMYPNFAENRSN 852
>pdb|1HVX|A Chain A, Bacillus Stearothermophilus Alpha-Amylase
Length = 515
Score = 30.0 bits (66), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 60/151 (39%), Gaps = 19/151 (12%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQA--CFFHDGPRGTHP 1086
+GT Q + H AG+ V DVV H K DG D + + GT+
Sbjct: 78 YGTKAQYLQAIQAAHAAGMQVYADVVFDH--KGGADGTEWVDAVEVNPSDRNQEISGTYQ 135
Query: 1087 LWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVT--SMLYHNHGCGEGFSGHYD 1144
+ F++ S+ +W Y FDG +D S +Y G G+ + D
Sbjct: 136 IQAWTKFDFPG---RGNTYSSFKW--RWYHFDGVDWDESRKLSRIYKFRGIGKAWDWEVD 190
Query: 1145 EYFGLNVDTDALIYLMVANKFLHDKYPEIIT 1175
G N D YLM A+ L +PE++T
Sbjct: 191 TENG-NYD-----YLMYAD--LDMDHPEVVT 213
>pdb|1UKS|A Chain A, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
pdb|1UKS|B Chain B, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
Length = 686
Score = 30.0 bits (66), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 29/126 (23%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS------------------KNVLDGLNEFD 357
+GT + K L+D H + V++D +H S N+L G +
Sbjct: 112 YGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLYDNGNLLGGYT--N 169
Query: 358 GTQACFFHDG-------PRGTHP-LWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRF 409
TQ F H G G + L+D N++ V +L ++ +LD DG R
Sbjct: 170 DTQNLFHHYGGTDLSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMWLD-LGVDGIRV 228
Query: 410 DGVTSM 415
D V M
Sbjct: 229 DAVKHM 234
>pdb|1V3K|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3K|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3M|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
pdb|1V3M|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
Length = 686
Score = 30.0 bits (66), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 29/126 (23%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS------------------KNVLDGLNEFD 357
+GT + K L+D H + V++D +H S N+L G +
Sbjct: 112 YGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLYDNGNLLGGYT--N 169
Query: 358 GTQACFFHDG-------PRGTHP-LWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRF 409
TQ F H G G + L+D N++ V +L ++ +LD DG R
Sbjct: 170 DTQNLFHHYGGTDFSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMWLD-LGVDGIRV 228
Query: 410 DGVTSM 415
D V M
Sbjct: 229 DAVKHM 234
>pdb|1V3J|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3J|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3L|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
pdb|1V3L|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
Length = 686
Score = 30.0 bits (66), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 29/126 (23%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS------------------KNVLDGLNEFD 357
+GT + K L+D H + V++D +H S N+L G +
Sbjct: 112 YGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLYDNGNLLGGYT--N 169
Query: 358 GTQACFFHDG-------PRGTHP-LWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRF 409
TQ F H G G + L+D N++ V +L ++ +LD DG R
Sbjct: 170 DTQNLFHHYGGTDFSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMWLD-LGVDGIRV 228
Query: 410 DGVTSM 415
D V M
Sbjct: 229 DAVKHM 234
>pdb|1PAM|A Chain A, Cyclodextrin Glucanotransferase
pdb|1PAM|B Chain B, Cyclodextrin Glucanotransferase
pdb|1I75|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1I75|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1UKQ|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
pdb|1UKQ|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
Length = 686
Score = 30.0 bits (66), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 29/126 (23%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS------------------KNVLDGLNEFD 357
+GT + K L+D H + V++D +H S N+L G +
Sbjct: 112 YGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLYDNGNLLGGYT--N 169
Query: 358 GTQACFFHDG-------PRGTHP-LWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRF 409
TQ F H G G + L+D N++ V +L ++ +LD DG R
Sbjct: 170 DTQNLFHHYGGTDFSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMWLD-LGVDGIRV 228
Query: 410 DGVTSM 415
D V M
Sbjct: 229 DAVKHM 234
>pdb|1UKT|A Chain A, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
pdb|1UKT|B Chain B, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
Length = 686
Score = 30.0 bits (66), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 29/126 (23%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS------------------KNVLDGLNEFD 357
+GT + K L+D H + V++D +H S N+L G +
Sbjct: 112 YGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLYDNGNLLGGYT--N 169
Query: 358 GTQACFFHDG-------PRGTHP-LWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRF 409
TQ F H G G + L+D N++ V +L ++ +LD DG R
Sbjct: 170 DTQNLFHHYGGTDFSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMWLD-LGVDGIRV 228
Query: 410 DGVTSM 415
D V M
Sbjct: 229 DAVKHM 234
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,703,625
Number of Sequences: 62578
Number of extensions: 2209944
Number of successful extensions: 5433
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 5077
Number of HSP's gapped (non-prelim): 299
length of query: 1351
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1240
effective length of database: 8,027,179
effective search space: 9953701960
effective search space used: 9953701960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)