Query psy9001
Match_columns 1351
No_of_seqs 875 out of 6390
Neff 6.3
Searched_HMMs 46136
Date Sat Aug 17 01:12:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9001.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9001hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02447 1,4-alpha-glucan-bran 100.0 2E-90 4.3E-95 856.1 48.7 523 21-644 71-734 (758)
2 PRK12568 glycogen branching en 100.0 4.2E-82 9E-87 781.1 44.0 463 66-641 136-729 (730)
3 PRK14705 glycogen branching en 100.0 1.2E-80 2.5E-85 799.4 43.6 459 67-641 637-1223(1224)
4 PRK14706 glycogen branching en 100.0 2.8E-79 6.1E-84 759.1 44.8 484 35-642 8-623 (639)
5 PLN02960 alpha-amylase 100.0 9.1E-77 2E-81 731.7 48.5 432 113-642 332-893 (897)
6 PLN02447 1,4-alpha-glucan-bran 100.0 2.3E-74 4.9E-79 713.4 35.4 492 666-1338 76-602 (758)
7 PRK05402 glycogen branching en 100.0 1.4E-71 3.1E-76 705.6 48.3 460 67-642 130-725 (726)
8 COG0296 GlgB 1,4-alpha-glucan 100.0 8.9E-73 1.9E-77 683.7 33.5 458 67-639 35-627 (628)
9 TIGR01515 branching_enzym alph 100.0 8.9E-72 1.9E-76 695.7 41.8 456 68-639 28-613 (613)
10 PRK12313 glycogen branching en 100.0 3.8E-71 8.3E-76 694.1 46.7 460 69-643 39-630 (633)
11 PLN03244 alpha-amylase; Provis 100.0 2.3E-70 4.9E-75 661.8 40.8 416 91-642 322-868 (872)
12 KOG0470|consensus 100.0 1E-68 2.2E-73 638.9 35.5 495 60-643 105-755 (757)
13 KOG0470|consensus 100.0 5E-68 1.1E-72 633.0 24.2 481 666-1327 74-603 (757)
14 PLN03244 alpha-amylase; Provis 100.0 8.1E-65 1.8E-69 613.7 33.7 376 821-1338 336-739 (872)
15 PLN02960 alpha-amylase 100.0 1E-63 2.2E-68 616.3 35.3 439 665-1203 88-635 (897)
16 PRK14706 glycogen branching en 100.0 3.9E-60 8.5E-65 588.3 35.8 446 691-1339 21-487 (639)
17 PRK12568 glycogen branching en 100.0 1.1E-58 2.4E-63 573.2 35.4 453 690-1338 120-591 (730)
18 PRK14705 glycogen branching en 100.0 1.9E-58 4E-63 594.5 32.5 448 690-1338 616-1087(1224)
19 TIGR01515 branching_enzym alph 100.0 3E-58 6.5E-63 574.3 32.7 446 692-1338 12-478 (613)
20 PRK05402 glycogen branching en 100.0 1.1E-57 2.5E-62 578.7 36.4 449 690-1338 113-587 (726)
21 PRK12313 glycogen branching en 100.0 4.9E-57 1.1E-61 566.8 36.6 444 692-1338 22-491 (633)
22 COG0296 GlgB 1,4-alpha-glucan 100.0 4E-56 8.6E-61 538.9 30.3 428 692-1320 21-469 (628)
23 TIGR02104 pulA_typeI pullulana 100.0 9E-56 1.9E-60 552.3 33.1 458 696-1338 11-508 (605)
24 TIGR02103 pullul_strch alpha-1 100.0 1.8E-55 3.9E-60 555.2 32.0 490 683-1320 111-705 (898)
25 PRK03705 glycogen debranching 100.0 4.9E-55 1.1E-59 543.6 26.2 452 694-1338 9-542 (658)
26 TIGR02104 pulA_typeI pullulana 100.0 9.8E-54 2.1E-58 534.0 37.5 310 61-470 12-353 (605)
27 PLN02877 alpha-amylase/limit d 100.0 2.3E-54 5E-59 542.9 29.4 466 696-1320 214-774 (970)
28 TIGR02100 glgX_debranch glycog 100.0 5E-54 1.1E-58 538.3 29.3 446 694-1337 4-547 (688)
29 TIGR02402 trehalose_TreZ malto 100.0 9.6E-54 2.1E-58 526.1 29.6 379 787-1324 22-421 (542)
30 TIGR02102 pullulan_Gpos pullul 100.0 9E-53 2E-57 539.4 32.0 450 696-1319 318-808 (1111)
31 TIGR02100 glgX_debranch glycog 100.0 1.3E-50 2.9E-55 507.5 41.9 286 61-417 7-348 (688)
32 PRK03705 glycogen debranching 100.0 1.9E-50 4.1E-55 502.6 40.7 287 61-416 12-342 (658)
33 TIGR02102 pullulan_Gpos pullul 100.0 1.5E-49 3.2E-54 509.9 43.0 298 61-415 319-647 (1111)
34 COG1523 PulA Type II secretory 100.0 2.7E-48 5.8E-53 478.1 34.3 292 65-418 27-367 (697)
35 TIGR02402 trehalose_TreZ malto 100.0 5.5E-48 1.2E-52 475.2 36.2 287 70-485 1-300 (542)
36 COG1523 PulA Type II secretory 100.0 4E-49 8.6E-54 485.4 23.9 384 786-1322 99-546 (697)
37 PRK14510 putative bifunctional 100.0 1.2E-48 2.5E-53 513.5 28.8 452 693-1338 12-550 (1221)
38 TIGR02103 pullul_strch alpha-1 100.0 4.7E-48 1E-52 488.1 27.2 334 61-469 128-529 (898)
39 PLN02877 alpha-amylase/limit d 100.0 8E-46 1.7E-50 465.9 29.1 329 61-468 215-599 (970)
40 PRK14510 putative bifunctional 100.0 4.5E-45 9.8E-50 479.7 33.0 285 61-416 16-348 (1221)
41 PRK10785 maltodextrin glucosid 100.0 1.3E-39 2.9E-44 405.9 37.2 357 74-547 33-559 (598)
42 TIGR02456 treS_nterm trehalose 100.0 6.4E-38 1.4E-42 387.7 31.9 204 175-466 2-240 (539)
43 TIGR02403 trehalose_treC alpha 100.0 8E-37 1.7E-41 377.5 32.0 211 175-467 1-246 (543)
44 PRK10933 trehalose-6-phosphate 100.0 5.6E-36 1.2E-40 369.7 33.4 172 172-417 4-207 (551)
45 PRK10785 maltodextrin glucosid 100.0 1.8E-36 3.9E-41 377.9 25.8 280 1007-1338 199-502 (598)
46 TIGR02456 treS_nterm trehalose 100.0 2.9E-35 6.3E-40 364.1 21.8 325 889-1338 4-397 (539)
47 TIGR02403 trehalose_treC alpha 100.0 4.2E-34 9E-39 353.4 17.4 165 1015-1185 56-251 (543)
48 PRK09441 cytoplasmic alpha-amy 100.0 1.3E-31 2.7E-36 327.8 29.8 188 196-471 19-269 (479)
49 PRK09505 malS alpha-amylase; R 100.0 5.2E-32 1.1E-36 337.6 26.5 312 172-546 183-681 (683)
50 PRK10933 trehalose-6-phosphate 100.0 2.8E-32 6E-37 336.9 18.7 162 1015-1184 62-257 (551)
51 PF00128 Alpha-amylase: Alpha 100.0 2.1E-33 4.5E-38 321.6 5.8 252 1014-1326 32-314 (316)
52 PRK09505 malS alpha-amylase; R 100.0 6.9E-32 1.5E-36 336.6 19.4 334 889-1338 188-625 (683)
53 PRK09441 cytoplasmic alpha-amy 100.0 1.3E-30 2.9E-35 318.8 17.1 238 1014-1319 52-367 (479)
54 PLN00196 alpha-amylase; Provis 100.0 1.5E-28 3.2E-33 294.1 19.3 141 1012-1182 69-232 (428)
55 PF00128 Alpha-amylase: Alpha 100.0 4.5E-29 9.8E-34 285.8 11.9 177 196-472 1-204 (316)
56 PLN02361 alpha-amylase 100.0 3.8E-28 8.2E-33 287.5 19.7 246 1013-1320 55-324 (401)
57 PLN00196 alpha-amylase; Provis 99.9 8.9E-27 1.9E-31 278.8 21.4 188 177-469 23-232 (428)
58 PLN02784 alpha-amylase 99.9 4.1E-26 8.9E-31 282.3 20.1 243 1014-1320 548-817 (894)
59 COG0366 AmyA Glycosidases [Car 99.9 5.3E-25 1.2E-29 270.5 21.0 165 179-417 1-205 (505)
60 PLN02361 alpha-amylase 99.9 1.4E-24 3E-29 257.2 21.6 169 197-469 27-208 (401)
61 PRK13840 sucrose phosphorylase 99.9 8.3E-24 1.8E-28 254.6 15.8 148 1014-1182 49-237 (495)
62 COG0366 AmyA Glycosidases [Car 99.9 5.9E-23 1.3E-27 252.5 19.8 169 891-1129 1-204 (505)
63 TIGR03852 sucrose_gtfA sucrose 99.9 2.3E-23 5.1E-28 249.3 13.9 153 1006-1181 36-233 (470)
64 TIGR02455 TreS_stutzeri trehal 99.9 1.7E-21 3.6E-26 235.0 28.8 212 177-467 50-340 (688)
65 PLN02784 alpha-amylase 99.9 2.7E-22 5.9E-27 248.7 18.7 189 177-470 497-703 (894)
66 TIGR03852 sucrose_gtfA sucrose 99.9 3.1E-22 6.7E-27 239.8 16.2 179 192-467 13-232 (470)
67 PRK13840 sucrose phosphorylase 99.8 1.2E-20 2.5E-25 227.6 14.9 180 195-468 16-236 (495)
68 TIGR02455 TreS_stutzeri trehal 99.8 5.1E-20 1.1E-24 222.3 16.8 184 992-1191 88-351 (688)
69 KOG0471|consensus 99.8 2E-20 4.3E-25 231.0 12.3 169 173-415 12-218 (545)
70 KOG0471|consensus 99.8 3.6E-18 7.8E-23 211.0 16.8 165 889-1129 16-219 (545)
71 TIGR02401 trehalose_TreY malto 99.7 2.1E-17 4.6E-22 207.8 16.6 172 195-465 12-282 (825)
72 smart00642 Aamy Alpha-amylase 99.7 3.2E-17 7E-22 173.6 9.6 95 183-347 1-97 (166)
73 PF14872 GHL5: Hypothetical gl 99.7 5.4E-16 1.2E-20 183.8 18.5 329 88-510 81-455 (811)
74 cd02854 Glycogen_branching_enz 99.7 2.9E-16 6.3E-21 152.2 10.5 92 65-157 2-98 (99)
75 TIGR02401 trehalose_TreY malto 99.6 7.8E-15 1.7E-19 184.9 15.0 159 1014-1199 45-305 (825)
76 cd02854 Glycogen_branching_enz 99.6 1.1E-14 2.3E-19 141.3 10.5 95 703-870 3-99 (99)
77 PRK14507 putative bifunctional 99.4 1.1E-12 2.3E-17 175.2 10.6 93 178-348 743-835 (1693)
78 PRK14511 maltooligosyl trehalo 99.4 1.2E-12 2.6E-17 166.0 9.4 83 195-349 16-98 (879)
79 cd02860 Pullulanase_N_term Pul 99.3 3.4E-12 7.3E-17 124.2 10.2 97 697-869 1-98 (100)
80 KOG2212|consensus 99.3 1E-11 2.2E-16 138.6 14.3 106 1022-1128 84-220 (504)
81 PF02806 Alpha-amylase_C: Alph 99.3 4E-12 8.6E-17 122.3 7.9 88 522-640 1-93 (95)
82 smart00642 Aamy Alpha-amylase 99.3 2.4E-12 5.2E-17 136.6 4.5 47 1014-1060 50-97 (166)
83 PF14872 GHL5: Hypothetical gl 99.2 7E-10 1.5E-14 132.8 21.3 296 826-1180 108-434 (811)
84 PF02922 CBM_48: Carbohydrate- 99.1 3.6E-10 7.9E-15 106.3 7.7 81 696-852 1-85 (85)
85 KOG2212|consensus 99.1 9.5E-10 2.1E-14 123.2 12.0 150 197-415 38-220 (504)
86 cd02860 Pullulanase_N_term Pul 99.0 7.2E-10 1.6E-14 107.9 9.0 83 64-154 4-95 (100)
87 TIGR01531 glyc_debranch glycog 99.0 4E-10 8.6E-15 146.8 7.8 85 195-352 128-217 (1464)
88 COG3280 TreY Maltooligosyl tre 99.0 6.6E-10 1.4E-14 135.1 7.1 80 197-348 17-96 (889)
89 cd02856 Glycogen_debranching_e 98.9 3.4E-09 7.3E-14 103.9 8.2 88 697-860 2-95 (103)
90 cd02853 MTHase_N_term Maltooli 98.9 3.2E-09 6.9E-14 100.4 6.9 81 698-866 1-84 (85)
91 PF02922 CBM_48: Carbohydrate- 98.9 4.6E-09 1E-13 98.8 7.8 67 68-140 11-85 (85)
92 PRK14511 maltooligosyl trehalo 98.9 1.3E-09 2.8E-14 138.8 5.2 49 1014-1062 49-98 (879)
93 cd02855 Glycogen_branching_enz 98.8 1.9E-08 4.2E-13 98.4 10.6 94 691-863 4-103 (106)
94 cd02855 Glycogen_branching_enz 98.8 1.3E-08 2.8E-13 99.6 9.3 74 68-148 21-100 (106)
95 cd02852 Isoamylase_N_term Isoa 98.8 1.1E-08 2.4E-13 102.8 8.1 89 698-862 1-101 (119)
96 PRK14507 putative bifunctional 98.8 5.4E-09 1.2E-13 140.6 6.5 47 1014-1060 787-834 (1693)
97 COG3280 TreY Maltooligosyl tre 98.7 1.2E-07 2.5E-12 116.1 12.9 57 1005-1061 37-96 (889)
98 cd02856 Glycogen_debranching_e 98.7 4.6E-08 9.9E-13 95.9 7.0 78 62-147 3-94 (103)
99 cd02852 Isoamylase_N_term Isoa 98.5 1.4E-07 3.1E-12 94.8 7.1 75 66-148 5-99 (119)
100 TIGR01531 glyc_debranch glycog 98.4 1.2E-07 2.7E-12 124.2 4.5 50 1013-1062 159-214 (1464)
101 cd02853 MTHase_N_term Maltooli 98.3 7.3E-07 1.6E-11 84.4 6.4 70 68-153 8-83 (85)
102 cd02858 Esterase_N_term Estera 98.3 1.5E-06 3.3E-11 82.3 6.9 23 702-724 3-25 (85)
103 cd02861 E_set_proteins_like E 98.3 2.1E-06 4.6E-11 80.7 7.2 66 69-147 3-73 (82)
104 PF02638 DUF187: Glycosyl hydr 98.2 1E-05 2.2E-10 94.6 14.0 138 319-463 69-226 (311)
105 PF11941 DUF3459: Domain of un 98.2 5.6E-06 1.2E-10 78.7 8.0 82 502-638 1-89 (89)
106 cd02858 Esterase_N_term Estera 98.1 8.8E-06 1.9E-10 77.1 7.9 66 67-145 5-75 (85)
107 PF14701 hDGE_amylase: glucano 97.9 2.8E-05 6E-10 93.0 8.8 90 195-351 18-108 (423)
108 cd02859 AMPKbeta_GBD_like AMP- 97.8 3.4E-05 7.4E-10 72.2 5.9 60 69-142 3-66 (79)
109 PF14871 GHL6: Hypothetical gl 97.5 0.0004 8.7E-09 71.4 9.7 86 314-411 39-132 (132)
110 PF02324 Glyco_hydro_70: Glyco 97.5 0.0002 4.4E-09 87.9 7.8 107 178-347 564-674 (809)
111 PF02638 DUF187: Glycosyl hydr 97.4 0.00071 1.5E-08 79.4 11.1 139 1032-1175 69-225 (311)
112 cd02861 E_set_proteins_like E 97.3 0.00085 1.8E-08 63.1 7.9 22 705-726 2-24 (82)
113 COG1649 Uncharacterized protei 97.2 0.0044 9.5E-08 74.4 13.7 132 320-462 115-268 (418)
114 cd02688 E_set E or "early" set 97.0 0.002 4.4E-08 59.4 6.8 55 68-129 4-63 (83)
115 PF14871 GHL6: Hypothetical gl 96.5 0.0077 1.7E-07 62.0 7.9 88 1025-1124 37-132 (132)
116 cd06597 GH31_transferase_CtsY 96.5 0.004 8.6E-08 74.1 6.7 93 1034-1127 86-188 (340)
117 PF02065 Melibiase: Melibiase; 96.4 0.019 4.1E-07 69.5 11.3 126 1033-1175 104-230 (394)
118 cd06597 GH31_transferase_CtsY 96.4 0.017 3.6E-07 68.8 10.7 94 321-415 86-189 (340)
119 cd06593 GH31_xylosidase_YicI Y 96.3 0.022 4.7E-07 66.9 10.9 131 1035-1178 68-206 (308)
120 cd02688 E_set E or "early" set 96.1 0.013 2.8E-07 54.1 6.4 20 705-724 4-23 (83)
121 cd06593 GH31_xylosidase_YicI Y 96.1 0.029 6.2E-07 65.9 10.6 131 322-465 68-206 (308)
122 cd06592 GH31_glucosidase_KIAA1 96.0 0.014 3E-07 68.4 7.2 90 1034-1127 71-166 (303)
123 cd06594 GH31_glucosidase_YihQ 95.8 0.012 2.7E-07 69.3 5.8 92 1034-1128 72-168 (317)
124 cd06592 GH31_glucosidase_KIAA1 95.7 0.017 3.6E-07 67.8 6.3 89 321-414 71-166 (303)
125 PF02065 Melibiase: Melibiase; 95.7 0.05 1.1E-06 65.9 10.4 129 319-464 103-232 (394)
126 cd06594 GH31_glucosidase_YihQ 95.6 0.013 2.9E-07 69.0 5.2 92 321-415 72-168 (317)
127 COG1649 Uncharacterized protei 95.6 0.039 8.5E-07 66.5 9.0 134 1032-1175 114-268 (418)
128 KOG3625|consensus 95.3 0.024 5.2E-07 71.6 6.2 35 318-352 194-229 (1521)
129 cd06600 GH31_MGAM-like This fa 95.2 0.024 5.1E-07 66.9 5.5 91 321-413 65-160 (317)
130 cd06600 GH31_MGAM-like This fa 95.2 0.028 6.1E-07 66.3 6.1 91 1034-1126 65-160 (317)
131 cd06591 GH31_xylosidase_XylS X 94.9 0.043 9.4E-07 64.8 6.5 89 1035-1127 68-160 (319)
132 cd06599 GH31_glycosidase_Aec37 94.8 0.048 1E-06 64.4 6.4 89 1034-1126 74-168 (317)
133 cd06602 GH31_MGAM_SI_GAA This 94.7 0.048 1E-06 65.0 6.3 90 323-413 69-165 (339)
134 cd06591 GH31_xylosidase_XylS X 94.6 0.044 9.6E-07 64.7 5.7 88 322-414 68-160 (319)
135 PF14701 hDGE_amylase: glucano 94.5 0.047 1E-06 66.0 5.4 44 1019-1062 56-106 (423)
136 cd06602 GH31_MGAM_SI_GAA This 94.3 0.083 1.8E-06 63.0 7.0 90 1036-1126 69-165 (339)
137 cd06599 GH31_glycosidase_Aec37 94.1 0.064 1.4E-06 63.3 5.5 88 321-413 74-168 (317)
138 PF13199 Glyco_hydro_66: Glyco 93.6 0.39 8.4E-06 60.6 11.3 155 316-492 166-333 (559)
139 PF02324 Glyco_hydro_70: Glyco 93.5 0.087 1.9E-06 65.8 5.2 46 370-415 136-190 (809)
140 TIGR01370 cysRS possible cyste 93.5 0.44 9.6E-06 56.1 10.8 135 1021-1178 66-212 (315)
141 PF13199 Glyco_hydro_66: Glyco 93.2 0.49 1.1E-05 59.7 11.3 93 1031-1128 168-270 (559)
142 PF00150 Cellulase: Cellulase 92.2 3.1 6.6E-05 47.4 15.3 107 319-466 61-172 (281)
143 cd06604 GH31_glucosidase_II_Ma 92.0 0.18 3.9E-06 60.2 5.0 89 321-413 65-159 (339)
144 PRK10658 putative alpha-glucos 91.9 0.47 1E-05 61.4 9.0 90 1034-1128 326-420 (665)
145 PRK10426 alpha-glucosidase; Pr 91.7 0.57 1.2E-05 60.5 9.3 91 1034-1128 270-365 (635)
146 cd06595 GH31_xylosidase_XylS-l 91.6 0.34 7.3E-06 56.6 6.6 85 1034-1126 75-159 (292)
147 cd06604 GH31_glucosidase_II_Ma 91.6 0.24 5.2E-06 59.1 5.5 89 1034-1126 65-159 (339)
148 PLN02950 4-alpha-glucanotransf 91.6 3.5 7.6E-05 55.3 16.6 139 67-225 152-304 (909)
149 PRK10426 alpha-glucosidase; Pr 91.4 0.6 1.3E-05 60.2 9.2 90 321-415 270-365 (635)
150 cd06598 GH31_transferase_CtsZ 91.2 0.33 7.1E-06 57.4 6.1 87 1035-1126 72-164 (317)
151 PRK10658 putative alpha-glucos 91.1 0.23 5E-06 64.2 5.1 89 321-415 326-420 (665)
152 PF13200 DUF4015: Putative gly 90.8 1.8 3.9E-05 51.1 11.5 85 319-413 60-147 (316)
153 cd06595 GH31_xylosidase_XylS-l 90.8 0.38 8.2E-06 56.2 6.0 85 321-413 75-159 (292)
154 PF01055 Glyco_hydro_31: Glyco 90.5 0.14 3E-06 63.1 2.2 92 1034-1128 84-182 (441)
155 cd06598 GH31_transferase_CtsZ 90.3 0.33 7.1E-06 57.4 5.0 86 322-413 72-164 (317)
156 PF01055 Glyco_hydro_31: Glyco 90.2 0.13 2.9E-06 63.2 1.7 93 321-415 84-182 (441)
157 COG1501 Alpha-glucosidases, fa 90.0 0.95 2.1E-05 59.4 9.2 95 314-415 318-417 (772)
158 cd05808 CBM20_alpha_amylase Al 90.0 1 2.2E-05 43.3 7.3 54 74-133 14-71 (95)
159 cd02875 GH18_chitobiase Chitob 89.9 1.5 3.2E-05 52.9 10.2 89 1029-1172 62-151 (358)
160 cd06542 GH18_EndoS-like Endo-b 89.6 1.1 2.3E-05 51.2 8.3 66 1031-1126 49-114 (255)
161 PF13200 DUF4015: Putative gly 89.5 2.3 5E-05 50.2 11.0 118 1032-1169 60-186 (316)
162 TIGR01370 cysRS possible cyste 88.9 2.4 5.2E-05 50.1 10.6 85 370-465 127-212 (315)
163 cd02875 GH18_chitobiase Chitob 88.9 1.6 3.4E-05 52.6 9.4 90 316-460 62-152 (358)
164 cd06603 GH31_GANC_GANAB_alpha 88.1 0.61 1.3E-05 55.7 5.1 91 1034-1126 65-162 (339)
165 smart00632 Aamy_C Aamy_C domai 87.6 2.1 4.6E-05 40.3 7.4 21 529-549 7-28 (81)
166 cd06603 GH31_GANC_GANAB_alpha 87.6 0.54 1.2E-05 56.1 4.2 89 321-412 65-161 (339)
167 PF00150 Cellulase: Cellulase 87.3 7 0.00015 44.4 13.0 107 1032-1179 61-172 (281)
168 cd06601 GH31_lyase_GLase GLase 86.7 1.5 3.2E-05 52.4 7.2 68 322-413 66-133 (332)
169 PLN02763 hydrolase, hydrolyzin 86.5 1.1 2.4E-05 59.7 6.5 89 321-413 242-336 (978)
170 PF07745 Glyco_hydro_53: Glyco 86.3 6 0.00013 47.2 11.9 167 317-513 55-228 (332)
171 cd06542 GH18_EndoS-like Endo-b 85.6 2.2 4.8E-05 48.6 7.7 64 318-411 49-112 (255)
172 PF00686 CBM_20: Starch bindin 85.6 1.4 3.1E-05 42.6 5.3 58 69-132 3-75 (96)
173 COG1501 Alpha-glucosidases, fa 84.8 1.3 2.8E-05 58.3 5.9 89 1036-1128 324-417 (772)
174 PLN02635 disproportionating en 84.7 4.7 0.0001 51.0 10.5 136 1032-1181 223-373 (538)
175 PLN02763 hydrolase, hydrolyzin 84.3 1.7 3.7E-05 58.0 6.7 89 1034-1126 242-336 (978)
176 cd06601 GH31_lyase_GLase GLase 84.0 2.4 5.1E-05 50.6 7.2 72 1028-1126 62-133 (332)
177 PF11852 DUF3372: Domain of un 83.8 3.9 8.4E-05 44.0 7.9 51 499-549 43-116 (168)
178 PRK14582 pgaB outer membrane N 82.7 10 0.00023 49.2 12.6 44 371-415 427-470 (671)
179 PF10438 Cyc-maltodext_C: Cycl 81.8 1.1 2.5E-05 42.0 2.7 21 529-549 8-32 (78)
180 PRK14508 4-alpha-glucanotransf 81.4 6.3 0.00014 49.6 9.8 139 1032-1184 197-350 (497)
181 cd06545 GH18_3CO4_chitinase Th 81.0 4.8 0.0001 46.0 8.0 87 1032-1169 45-131 (253)
182 COG3867 Arabinogalactan endo-1 80.8 14 0.0003 42.8 11.2 165 320-513 104-274 (403)
183 cd02871 GH18_chitinase_D-like 80.7 5.8 0.00013 46.9 8.8 64 1030-1126 57-120 (312)
184 cd02859 AMPKbeta_GBD_like AMP- 79.1 5.9 0.00013 37.2 6.5 20 706-726 3-23 (79)
185 COG3589 Uncharacterized conser 78.9 2 4.3E-05 50.3 4.0 27 319-345 48-74 (360)
186 PLN02635 disproportionating en 78.0 9.5 0.00021 48.3 9.8 133 321-468 225-373 (538)
187 PF05913 DUF871: Bacterial pro 76.9 1.7 3.7E-05 52.2 2.8 24 1032-1055 46-69 (357)
188 PRK14508 4-alpha-glucanotransf 75.3 15 0.00033 46.3 10.6 135 320-469 198-348 (497)
189 cd06547 GH85_ENGase Endo-beta- 73.3 7.2 0.00016 46.7 6.8 96 1037-1177 50-146 (339)
190 cd02874 GH18_CFLE_spore_hydrol 73.0 21 0.00045 42.0 10.6 89 1035-1169 47-136 (313)
191 COG3589 Uncharacterized conser 72.4 5.6 0.00012 46.8 5.3 24 1032-1055 48-71 (360)
192 cd06589 GH31 The enzymes of gl 71.9 5.3 0.00012 46.0 5.1 51 1035-1128 68-118 (265)
193 cd06545 GH18_3CO4_chitinase Th 71.0 11 0.00025 42.9 7.5 87 319-456 45-131 (253)
194 PF08533 Glyco_hydro_42C: Beta 70.9 11 0.00023 33.2 5.7 13 628-640 46-58 (58)
195 cd06589 GH31 The enzymes of gl 69.7 5.4 0.00012 45.9 4.6 51 322-415 68-118 (265)
196 PF02903 Alpha-amylase_N: Alph 69.7 9.8 0.00021 38.4 5.9 75 49-133 4-94 (120)
197 cd05809 CBM20_beta_amylase Bet 68.5 9.2 0.0002 37.4 5.3 51 74-130 17-73 (99)
198 PF05913 DUF871: Bacterial pro 68.5 4 8.6E-05 49.1 3.2 26 319-344 46-71 (357)
199 cd02871 GH18_chitinase_D-like 68.4 15 0.00032 43.5 7.9 62 318-412 58-119 (312)
200 cd06547 GH85_ENGase Endo-beta- 65.4 11 0.00024 45.1 6.1 59 386-463 86-145 (339)
201 cd05816 CBM20_DPE2_repeat2 Dis 65.3 16 0.00035 35.6 6.2 50 75-129 15-68 (99)
202 PF07745 Glyco_hydro_53: Glyco 64.4 24 0.00052 42.2 8.6 120 1029-1177 54-174 (332)
203 KOG1065|consensus 64.1 13 0.00029 48.5 6.8 94 314-413 348-448 (805)
204 cd02874 GH18_CFLE_spore_hydrol 62.9 24 0.00052 41.5 8.3 89 322-456 47-136 (313)
205 TIGR00217 malQ 4-alpha-glucano 62.8 31 0.00067 43.8 9.6 137 1032-1182 211-363 (513)
206 cd00598 GH18_chitinase-like Th 62.0 89 0.0019 34.0 12.1 66 1031-1126 47-114 (210)
207 KOG3625|consensus 61.9 17 0.00038 47.5 7.0 69 1089-1185 497-570 (1521)
208 PRK11052 malQ 4-alpha-glucanot 61.5 45 0.00099 43.8 11.0 139 1032-1183 354-503 (695)
209 cd06562 GH20_HexA_HexB-like Be 60.8 70 0.0015 38.5 11.8 81 318-403 68-149 (348)
210 PF02446 Glyco_hydro_77: 4-alp 59.8 8.3 0.00018 48.6 3.9 137 1032-1184 191-339 (496)
211 PF02449 Glyco_hydro_42: Beta- 59.8 22 0.00048 43.0 7.5 77 320-403 47-124 (374)
212 TIGR00217 malQ 4-alpha-glucano 59.7 42 0.0009 42.6 10.0 91 319-415 211-316 (513)
213 cd05814 CBM20_Prei4 Prei4, N-t 58.4 15 0.00033 37.2 4.8 48 74-127 15-68 (120)
214 cd06568 GH20_SpHex_like A subg 57.7 87 0.0019 37.5 11.8 77 318-401 73-152 (329)
215 cd06546 GH18_CTS3_chitinase GH 57.1 45 0.00097 38.4 8.9 66 1030-1125 56-121 (256)
216 PF01120 Alpha_L_fucos: Alpha- 56.3 38 0.00083 40.7 8.6 107 1032-1178 137-244 (346)
217 cd06570 GH20_chitobiase-like_1 55.9 90 0.002 37.1 11.4 78 318-402 66-146 (311)
218 PRK11052 malQ 4-alpha-glucanot 55.9 53 0.0011 43.2 10.2 88 321-415 356-455 (695)
219 PF01120 Alpha_L_fucos: Alpha- 55.4 1.4E+02 0.0029 36.1 13.0 106 319-464 137-243 (346)
220 cd05467 CBM20 The family 20 ca 55.1 25 0.00053 33.7 5.5 52 74-130 13-70 (96)
221 COG3867 Arabinogalactan endo-1 55.0 49 0.0011 38.5 8.4 115 1030-1175 98-218 (403)
222 cd06543 GH18_PF-ChiA-like PF-C 54.6 89 0.0019 36.8 11.0 90 1032-1175 53-142 (294)
223 cd05817 CBM20_DSP Dual-specifi 54.2 26 0.00056 34.3 5.5 48 75-128 14-65 (100)
224 PF03644 Glyco_hydro_85: Glyco 53.3 32 0.0007 40.8 7.1 96 1037-1177 46-141 (311)
225 cd02742 GH20_hexosaminidase Be 53.3 22 0.00048 41.9 5.8 120 1031-1178 70-192 (303)
226 cd06563 GH20_chitobiase-like T 51.7 1.2E+02 0.0027 36.6 11.9 78 318-402 84-164 (357)
227 KOG1065|consensus 50.0 39 0.00084 44.4 7.5 92 1028-1126 349-448 (805)
228 cd06562 GH20_HexA_HexB-like Be 49.9 51 0.0011 39.7 8.2 79 1031-1116 68-149 (348)
229 COG2342 Predicted extracellula 49.6 1.1E+02 0.0024 35.6 10.1 83 1085-1177 108-191 (300)
230 cd00598 GH18_chitinase-like Th 49.0 1.6E+02 0.0034 32.1 11.4 64 319-412 48-113 (210)
231 cd06570 GH20_chitobiase-like_1 47.1 45 0.00097 39.6 7.0 78 1031-1115 66-146 (311)
232 cd02877 GH18_hevamine_XipI_cla 45.8 1.3E+02 0.0028 35.3 10.4 23 1031-1053 57-79 (280)
233 cd06546 GH18_CTS3_chitinase GH 45.2 66 0.0014 37.1 7.8 65 317-411 56-120 (256)
234 PF14883 GHL13: Hypothetical g 45.1 3.9E+02 0.0085 31.5 13.8 74 379-462 112-189 (294)
235 COG2342 Predicted extracellula 43.6 86 0.0019 36.5 8.1 84 372-465 108-192 (300)
236 cd02742 GH20_hexosaminidase Be 43.2 35 0.00076 40.2 5.4 77 318-402 70-147 (303)
237 cd06564 GH20_DspB_LnbB-like Gl 42.4 42 0.00091 40.0 5.9 122 1031-1179 80-202 (326)
238 cd06563 GH20_chitobiase-like T 41.0 86 0.0019 37.9 8.3 79 1031-1115 84-164 (357)
239 cd05811 CBM20_glucoamylase Glu 40.7 93 0.002 30.5 7.1 58 69-132 8-80 (106)
240 smart00812 Alpha_L_fucos Alpha 40.6 1.4E+02 0.003 36.6 10.0 97 1032-1173 127-226 (384)
241 PLN03236 4-alpha-glucanotransf 39.6 53 0.0011 43.3 6.5 88 1032-1128 273-372 (745)
242 cd06543 GH18_PF-ChiA-like PF-C 39.0 1.6E+02 0.0034 34.8 9.8 90 319-462 53-142 (294)
243 cd06565 GH20_GcnA-like Glycosy 39.0 1.5E+02 0.0032 35.0 9.7 125 1031-1179 58-187 (301)
244 cd06568 GH20_SpHex_like A subg 37.4 1E+02 0.0022 37.0 8.0 121 1031-1178 73-196 (329)
245 PF03423 CBM_25: Carbohydrate 36.2 70 0.0015 30.7 5.2 46 74-128 18-70 (87)
246 cd06565 GH20_GcnA-like Glycosy 36.1 1.8E+02 0.0039 34.3 9.8 73 318-403 58-131 (301)
247 PF02449 Glyco_hydro_42: Beta- 35.9 57 0.0012 39.5 5.7 77 1033-1116 47-124 (374)
248 cd06569 GH20_Sm-chitobiase-lik 35.9 3E+02 0.0065 34.4 12.1 84 318-401 95-192 (445)
249 cd05813 CBM20_genethonin_1 Gen 35.8 88 0.0019 30.1 6.0 46 75-127 16-64 (95)
250 PLN02950 4-alpha-glucanotransf 35.8 67 0.0015 43.5 6.8 88 321-415 462-559 (909)
251 COG2730 BglC Endoglucanase [Ca 35.8 55 0.0012 40.3 5.7 21 321-341 117-137 (407)
252 cd04733 OYE_like_2_FMN Old yel 35.5 3.7E+02 0.008 32.2 12.4 131 1031-1171 80-214 (338)
253 PF14488 DUF4434: Domain of un 34.9 1.1E+02 0.0023 33.1 6.9 28 317-344 62-89 (166)
254 cd02877 GH18_hevamine_XipI_cla 34.3 2E+02 0.0043 33.8 9.5 20 319-338 58-77 (280)
255 PF03644 Glyco_hydro_85: Glyco 34.1 60 0.0013 38.6 5.4 95 324-464 46-141 (311)
256 PF01301 Glyco_hydro_35: Glyco 34.1 50 0.0011 39.3 4.7 24 319-342 62-85 (319)
257 PF00728 Glyco_hydro_20: Glyco 33.7 98 0.0021 36.8 7.2 79 318-403 71-156 (351)
258 cd02872 GH18_chitolectin_chito 33.6 96 0.0021 37.3 7.2 63 1096-1174 92-155 (362)
259 cd06569 GH20_Sm-chitobiase-lik 32.3 1E+02 0.0022 38.6 7.1 83 1031-1114 95-192 (445)
260 cd06564 GH20_DspB_LnbB-like Gl 31.4 71 0.0015 38.1 5.4 75 318-403 80-155 (326)
261 cd05818 CBM20_water_dikinase P 30.8 1.2E+02 0.0025 29.3 5.9 50 74-131 15-67 (92)
262 COG1640 MalQ 4-alpha-glucanotr 30.8 2.3E+02 0.0049 36.1 9.7 89 1032-1129 209-309 (520)
263 cd05820 CBM20_novamyl Novamyl 30.4 1.2E+02 0.0027 29.8 6.1 52 75-132 19-77 (103)
264 cd05815 CBM20_DPE2_repeat1 Dis 30.3 1.1E+02 0.0025 29.7 5.8 52 74-131 13-71 (101)
265 smart00636 Glyco_18 Glycosyl h 30.0 1.4E+02 0.003 35.3 7.7 56 1096-1169 87-142 (334)
266 cd06548 GH18_chitinase The GH1 29.4 1.4E+02 0.003 35.4 7.5 30 1096-1125 105-134 (322)
267 cd02857 CD_pullulan_degrading_ 29.3 2.3E+02 0.005 27.7 7.9 53 68-127 16-81 (116)
268 cd02872 GH18_chitolectin_chito 28.9 1.2E+02 0.0027 36.3 7.0 63 383-461 92-155 (362)
269 cd02879 GH18_plant_chitinase_c 28.8 1.6E+02 0.0034 34.7 7.7 53 1096-1168 88-141 (299)
270 smart00812 Alpha_L_fucos Alpha 28.6 1.2E+03 0.026 28.7 17.8 102 319-465 127-233 (384)
271 PLN03059 beta-galactosidase; P 27.9 4.2E+02 0.009 35.8 11.7 121 1029-1179 94-222 (840)
272 PF00724 Oxidored_FMN: NADH:fl 27.3 1.9E+02 0.004 34.8 8.1 131 1032-1172 79-215 (341)
273 PF00728 Glyco_hydro_20: Glyco 27.2 53 0.0011 39.1 3.4 80 1031-1116 71-156 (351)
274 PLN03236 4-alpha-glucanotransf 27.1 1.2E+02 0.0027 40.0 6.8 90 320-415 274-372 (745)
275 PRK14582 pgaB outer membrane N 26.8 1.7E+02 0.0038 38.4 8.1 80 1042-1128 390-470 (671)
276 cd02932 OYE_YqiM_FMN Old yello 26.4 1.1E+03 0.025 28.0 14.5 132 1031-1171 75-219 (336)
277 cd05810 CBM20_alpha_MTH Glucan 25.9 1.1E+02 0.0024 29.9 4.8 50 75-130 16-69 (97)
278 PF00704 Glyco_hydro_18: Glyco 25.8 1.9E+02 0.0041 34.1 7.7 65 1097-1177 96-164 (343)
279 cd02931 ER_like_FMN Enoate red 25.5 7.5E+02 0.016 30.3 12.9 128 1032-1172 82-217 (382)
280 TIGR03849 arch_ComA phosphosul 25.3 1.4E+02 0.003 34.2 6.0 20 319-338 99-118 (237)
281 PRK10076 pyruvate formate lyas 25.3 1.4E+02 0.0031 33.4 6.2 21 318-338 191-211 (213)
282 cd02929 TMADH_HD_FMN Trimethyl 24.9 9.9E+02 0.021 29.1 13.7 127 1031-1171 81-215 (370)
283 cd06549 GH18_trifunctional GH1 24.9 1.5E+02 0.0032 34.9 6.5 55 1095-1169 83-137 (298)
284 PF01212 Beta_elim_lyase: Beta 24.9 63 0.0014 38.0 3.4 23 1031-1053 143-165 (290)
285 KOG2499|consensus 24.6 3.3E+02 0.0071 34.2 9.2 30 318-347 248-278 (542)
286 cd02876 GH18_SI-CLP Stabilin-1 24.6 1.6E+02 0.0035 34.8 6.8 59 1096-1170 88-147 (318)
287 PF02446 Glyco_hydro_77: 4-alp 24.1 73 0.0016 40.3 4.0 30 194-228 13-43 (496)
288 PF03198 Glyco_hydro_72: Gluca 23.6 1.3E+02 0.0029 35.7 5.6 22 326-347 85-106 (314)
289 COG2200 Rtn c-di-GMP phosphodi 23.2 78 0.0017 36.3 3.7 24 320-343 193-216 (256)
290 cd06548 GH18_chitinase The GH1 23.0 2E+02 0.0043 34.1 7.2 29 383-411 105-133 (322)
291 cd02876 GH18_SI-CLP Stabilin-1 22.4 1.3E+02 0.0028 35.6 5.4 59 383-457 88-147 (318)
292 smart00636 Glyco_18 Glycosyl h 22.1 1.9E+02 0.0041 34.2 6.8 56 383-456 87-142 (334)
293 PF14587 Glyco_hydr_30_2: O-Gl 22.0 3.9E+02 0.0086 32.7 9.2 118 323-466 107-227 (384)
294 cd02803 OYE_like_FMN_family Ol 21.8 3.5E+02 0.0077 31.9 9.0 127 1031-1170 75-205 (327)
295 PF01212 Beta_elim_lyase: Beta 21.4 80 0.0017 37.1 3.4 24 318-341 143-166 (290)
296 cd06549 GH18_trifunctional GH1 20.5 1.7E+02 0.0037 34.3 5.9 54 382-456 83-137 (298)
297 PF15640 Tox-MPTase4: Metallop 20.5 85 0.0018 32.2 2.8 25 1028-1052 17-41 (132)
298 PRK05628 coproporphyrinogen II 20.2 1.6E+02 0.0034 35.8 5.6 34 315-348 139-173 (375)
299 cd04735 OYE_like_4_FMN Old yel 20.1 1.2E+03 0.027 28.0 13.1 131 1031-1171 76-209 (353)
No 1
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=100.00 E-value=2e-90 Score=856.07 Aligned_cols=523 Identities=46% Similarity=0.839 Sum_probs=469.4
Q ss_pred HHHHHhhhccCCCCChhhhhHhhhccc-ccCCCCCccccccccccccCceeEEE-----EEEEEEEeecCCCCcccccee
Q psy9001 21 KYLVDECHKAGLFGTPEQLKYLVDECH-KAGLFGTPEQLKYLVDECHKAGLLCF-----MHVVCAAGDFNNWNREEFAYK 94 (1351)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~~~~l~~l~~~~~~~gv~F~-----A~~V~LvGDFN~Wd~~~~~M~ 94 (1351)
-|...+.+|+..| .+..++|++.. +-+.|+.. ...+|.. ..++|++|+ |++|+|+||||+|++..++|+
T Consensus 71 ~~~~~~~~r~~~~---~~~~~~i~~~~~~l~~f~~~-y~~lGa~-~~~~g~~FrvWAP~A~~V~LvGdFN~W~~~~~~M~ 145 (758)
T PLN02447 71 PYEDHLRYRYSRY---RRRREEIEKNEGGLEAFSRG-YEKFGFN-RSEGGITYREWAPGAKAAALIGDFNNWNPNAHWMT 145 (758)
T ss_pred hHHHHHHHHHHHH---HHHHHHHhhcCCCHHHHHHH-HHhceeE-EecCCEEEEEECCCCCEEEEEEecCCCCCCccCce
Confidence 4666788888888 88888888544 34557653 4444444 455899999 999999999999999899999
Q ss_pred ecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeeccCCcceEEecCCCC-ccceeeeeeCCCCCCCCccCCCCC
Q psy9001 95 KLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATYVTEPPVV-GHAYEQRIWNPKPQDKHKWTSSKP 173 (1351)
Q Consensus 95 k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPyA~~~~~~~~~-~~~~~~~~~~p~~~~~~~w~~~~p 173 (1351)
+.++|+|+++||+ .+|.|+++||++|||+|++.+|....++||||++++.++.. +.++++++|+|+..++|.|++.+|
T Consensus 146 ~~~~GvWe~~ip~-~~g~~~~~~G~~Yky~i~~~~g~~~~r~dpya~~~~~~p~~~~~~~~svv~dp~~~~~y~w~~~~~ 224 (758)
T PLN02447 146 KNEFGVWEIFLPD-ADGSPAIPHGSRVKIRMETPDGRWVDRIPAWIKYAVQAPGEIGAPYNGVYWDPPEEEKYVFKHPRP 224 (758)
T ss_pred eCCCCEEEEEECC-ccccccCCCCCEEEEEEEeCCCcEEeecCchHheeeccCCccCCCCceEEeCCCCCCCCCCCCCCC
Confidence 9889999999999 77878999999999999998898899999999999998752 456788999996445799999888
Q ss_pred CCCCCceEEEEecCCccCCCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccc
Q psy9001 174 KKPDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAY 253 (1351)
Q Consensus 174 ~~~~~~vIYE~hvr~ft~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~ 253 (1351)
+.+.+++|||+|||+|+++...|+|+++++++|||||+||||+ ||||| ++|+ +.
T Consensus 225 ~~~~~~~IYE~Hvg~~~~~~~~gty~~~~~~~L~ylk~LG~t~----I~LmP--------------------i~e~--~~ 278 (758)
T PLN02447 225 PRPAALRIYEAHVGMSSEEPKVNSYREFADDVLPRIKALGYNA----VQLMA--------------------IQEH--AY 278 (758)
T ss_pred CCCCCCEEEEEeCCcccCCCCCCCHHHHHHHHHHHHHHcCCCE----EEECC--------------------cccc--CC
Confidence 7778999999999999988889999999988899999999999 99999 4454 55
Q ss_pred cCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcC
Q psy9001 254 AESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 333 (1351)
Q Consensus 254 ~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~G 333 (1351)
.++ |||++++|| +++ ++||+++|||+||++||++|
T Consensus 279 ~~~-----wGY~~~~~f---------------------a~~-------------------~~~Gtp~dlk~LVd~aH~~G 313 (758)
T PLN02447 279 YGS-----FGYHVTNFF---------------------AVS-------------------SRSGTPEDLKYLIDKAHSLG 313 (758)
T ss_pred CCC-----CCcCcccCc---------------------ccc-------------------cccCCHHHHHHHHHHHHHCC
Confidence 555 999999999 887 89999999999999999999
Q ss_pred CEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHcCCCcccccccc
Q psy9001 334 LYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVT 413 (1351)
Q Consensus 334 I~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~ 413 (1351)
|+||||||+||++.+...++..|+|+...||+.++.+.+..|++.+||+++++||+||+++++||++||||||||||++.
T Consensus 314 I~VilDvV~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV~ 393 (758)
T PLN02447 314 LRVLMDVVHSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGVT 393 (758)
T ss_pred CEEEEEeccccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhCcccccccchh
Confidence 99999999999998866778889998878888777777788988899999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCCcccccccCCCCCCCcCC--cC
Q psy9001 414 SMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLE--IR 491 (1351)
Q Consensus 414 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~~~~p~~~~~~~~gg~gfd~~~~--~~ 491 (1351)
+|+|+++|.+.+|++++.+++++++|.+++.||+++|+.||+.+|++++|||+++++|.+|+|++.||+||||+|+ |+
T Consensus 394 smlY~~hg~~~~f~~~~~~~~g~~~d~~a~~fL~~~N~~i~~~~p~~~~IAEd~s~~p~l~~p~~~GGlGFDykw~Mg~~ 473 (758)
T PLN02447 394 SMLYHHHGLQMAFTGNYNEYFGMATDVDAVVYLMLANDLLHGLYPEAVTIAEDVSGMPTLCRPVQEGGVGFDYRLAMAIP 473 (758)
T ss_pred hhhccccCcccccccCcccccCCccChHHHHHHHHHHHHHHHhCCCeEEEEEcCCCCCCccccCCCCcCCcceEECCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 77
Q ss_pred CCC------------------------------------------CCCc-------------------------------
Q psy9001 492 PDM------------------------------------------SDMT------------------------------- 498 (1351)
Q Consensus 492 ~d~------------------------------------------~~~s------------------------------- 498 (1351)
++. ++++
T Consensus 474 ~~~l~~l~~~~d~~~~~~~l~~sl~~r~~~E~~I~y~eSHDevv~Gkksl~~~l~d~~my~~m~~~~~~~~~~~R~~~lh 553 (758)
T PLN02447 474 DKWIELLKEKRDEDWSMGDIVHTLTNRRYTEKCVAYAESHDQALVGDKTIAFWLMDKEMYDGMSTLTPATPVVDRGIALH 553 (758)
T ss_pred hHHHHHHhhCCCcccCHHHHHHHHhcccccCceEeccCCcCeeecCcchhHhhhcchhhhhcCCCChhhhhhHHHHHHHH
Confidence 653 1111
Q ss_pred -----------------------------------------------------------HHHHHHHHHHhhhcccccccC
Q psy9001 499 -----------------------------------------------------------VGTFDAAMNTTEERFKWLSAD 519 (1351)
Q Consensus 499 -----------------------------------------------------------l~~f~k~L~~Lr~~~~~L~~g 519 (1351)
|++|+|+||+|++++++|..+
T Consensus 554 kmirl~~~~~pG~g~L~FMGnEFg~~ew~Dfpr~~n~ws~~~~~~~W~L~d~~~l~~~~l~~f~~~L~~l~~~~~~L~~~ 633 (758)
T PLN02447 554 KMIRLITMALGGEGYLNFMGNEFGHPEWIDFPREGNGWSYDKCRRRWDLADADHLRYKFLNAFDRAMMHLDEKYGFLTSE 633 (758)
T ss_pred HHHHHHHHhCCCCcceeecccccCCchhccCcccccccCcccccCCccccCCCchhhhHHHHHHHHHHHHHhcCccccCC
Confidence 256999999999999999999
Q ss_pred CcceEeecCCCcEEEEEeCceEEEEeCCCCCcccccccccccCcccccccccccccccceEeeeccCCceEEEccCCCCc
Q psy9001 520 PGYVSTKHEGDKVIIFERAGLLFAFNFNGTQSFTDYRYCSTQSYSTHNTWTWRGSISKLHRVGVEQAGKYKVVLDSDCSH 599 (1351)
Q Consensus 520 ~~~~~~~~~~~~Vlaf~R~~ll~v~Nf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g~~~~vlnsD~~~ 599 (1351)
..++...+++++||+|.|..|||||||+|++++.+|+ ||||.+|+|++|||||+.+
T Consensus 634 ~~~i~~~d~~~~Viaf~R~~ll~V~NF~p~~s~~~Y~------------------------igvp~~G~y~~ilnSD~~~ 689 (758)
T PLN02447 634 HQYVSRKDEGDKVIVFERGDLVFVFNFHPTNSYSDYR------------------------VGCDKPGKYKIVLDSDAWE 689 (758)
T ss_pred CceeeeecCCCCEEEEEeCCeEEEEeCCCCCCCCCcE------------------------ECCCCCCeEEEEECCCchh
Confidence 8899999999999999999999999999977899999 9999999999999999999
Q ss_pred cCcccccCCCCceeeeecccCCcccEEEEEeCCcEEEEEEECCCC
Q psy9001 600 FGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGLILTTSPGT 644 (1351)
Q Consensus 600 ygG~~~~~~~~~~~~~~~~~~g~~~si~l~LPpls~~vl~~~~~~ 644 (1351)
|||+++++..+.+.+++.+|+|+++||.|+|||++++||++.++.
T Consensus 690 fGG~~~~~~~~~~~~~~~~~~~~~~s~~v~iP~~~~~vl~~~~~~ 734 (758)
T PLN02447 690 FGGFGRVDHDADHFTPEGNFDNRPHSFMVYAPSRTAVVYAPVDED 734 (758)
T ss_pred cCCCCccCCCccEEecccCcCCCCcEEEEEeCCceEEEEEECCcc
Confidence 999999876666888999999999999999999999999998654
No 2
>PRK12568 glycogen branching enzyme; Provisional
Probab=100.00 E-value=4.2e-82 Score=781.14 Aligned_cols=463 Identities=28% Similarity=0.506 Sum_probs=399.1
Q ss_pred cCceeEEE-----EEEEEEEeecCCCCccccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeeccCCcc
Q psy9001 66 HKAGLLCF-----MHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWA 140 (1351)
Q Consensus 66 ~~~gv~F~-----A~~V~LvGDFN~Wd~~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPyA 140 (1351)
...||+|+ |++|+|+||||+|++..+||++..+|+|+++||++.+| ..|||+|++.+|+...++||||
T Consensus 136 g~~Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~~~GVWelfipg~~~G-------~~YKYeI~~~~G~~~~k~DPYA 208 (730)
T PRK12568 136 EVPGVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQRIGGFWELFLPRVEAG-------ARYKYAITAADGRVLLKADPVA 208 (730)
T ss_pred CCCcEEEEEECCCCCEEEEEEecCCCCccceecccCCCCEEEEEECCCCCC-------CEEEEEEEcCCCeEeecCCCcc
Confidence 35699999 99999999999999999999988899999999998766 5999999988898889999999
Q ss_pred eEEecCCC-Cccceee--eeeCCCCCCCCccCCCCCC--CCCCceEEEEecCCccCC--CCCCCHHHHHHhhhHHHHHcC
Q psy9001 141 TYVTEPPV-VGHAYEQ--RIWNPKPQDKHKWTSSKPK--KPDNLKIYESHVGICTQE--QKCASYEDFVRVVIPRIVKQG 213 (1351)
Q Consensus 141 ~~~~~~~~-~~~~~~~--~~~~p~~~~~~~w~~~~p~--~~~~~vIYE~hvr~ft~~--~~~G~~~gi~~~~L~yLk~LG 213 (1351)
++++.++. +|++.+. ..|.+. .|...+++ ..++++|||+|+|+|+.. ...++|+++++++|||||+||
T Consensus 209 ~~~e~~p~~asvV~~~~~~~W~d~-----~W~~~r~~~~~~~~~~IYEvHvgsf~~~~~~~~~~~~~la~~ll~ylk~LG 283 (730)
T PRK12568 209 RQTELPPATASVVPSAAAFAWTDA-----AWMARRDPAAVPAPLSIYEVHAASWRRDGHNQPLDWPTLAEQLIPYVQQLG 283 (730)
T ss_pred eEeecCCCCCeEEcCCCCCCCCCh-----hhhhcccccCCCCCcEEEEEEhHHhcCCCCCCCCCHHHHHHHHHHHHHHcC
Confidence 99999886 4555431 123222 34443432 468999999999999853 457899999999889999999
Q ss_pred CCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccchhhhcccccCCCCchhcccc
Q psy9001 214 MAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRA 293 (1351)
Q Consensus 214 vt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~ 293 (1351)
||+ ||||| +.|+ |..++ |||++++|| ++
T Consensus 284 vt~----I~LmP--------------------i~e~--~~~~~-----wGY~~~~~~---------------------a~ 311 (730)
T PRK12568 284 FTH----IELLP--------------------ITEH--PFGGS-----WGYQPLGLY---------------------AP 311 (730)
T ss_pred CCE----EEECc--------------------cccC--CCCCC-----CCCCCCcCC---------------------cc
Confidence 999 99999 4444 54444 999999999 88
Q ss_pred cccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccC-CCCCC
Q psy9001 294 CEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDG-PRGTH 372 (1351)
Q Consensus 294 ~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~-~~~~~ 372 (1351)
+ ++||+++|||+||++||++||+||||+|+||++.+ ..++..|+|. ..|.+.+ ..+.+
T Consensus 312 ~-------------------~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~d-~~~l~~fdg~-~~Ye~~d~~~g~~ 370 (730)
T PRK12568 312 T-------------------ARHGSPDGFAQFVDACHRAGIGVILDWVSAHFPDD-AHGLAQFDGA-ALYEHADPREGMH 370 (730)
T ss_pred C-------------------cccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcc-ccccccCCCc-cccccCCCcCCcc
Confidence 8 99999999999999999999999999999999987 4567788886 3444433 34678
Q ss_pred CCCCCccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHH
Q psy9001 373 PLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKF 452 (1351)
Q Consensus 373 ~~w~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~ 452 (1351)
.+|++..||+++|+||+||+++++||++||||||||+|++.+|++.++++..+.+ ..+.+|++.|.++++||+++|+.
T Consensus 371 ~~W~~~~~N~~~peVr~~li~~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w--~pn~~gg~en~ea~~Fl~~ln~~ 448 (730)
T PRK12568 371 RDWNTLIYNYGRPEVTAYLLGSALEWIEHYHLDGLRVDAVASMLYRDYGRAEGEW--VPNAHGGRENLEAVAFLRQLNRE 448 (730)
T ss_pred CCCCCeecccCCHHHHHHHHHHHHHHHHHhCceEEEEcCHhHhhhhccccccccc--cccccCCccChHHHHHHHHHHHH
Confidence 8999888999999999999999999999999999999999999999888766533 23456889999999999999999
Q ss_pred HHhhCCCeEEEEEcCCCCCCcccccccCCCCCCCcCC--cCCCC------------------------------------
Q psy9001 453 LHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLE--IRPDM------------------------------------ 494 (1351)
Q Consensus 453 v~~~~P~~~~iaE~~~~~p~~~~~~~~gg~gfd~~~~--~~~d~------------------------------------ 494 (1351)
+++.+|++++|||+++.+|.++.|...||+|||++|+ ||+|+
T Consensus 449 v~~~~P~~~~IAEest~~p~vt~p~~~gGlGFd~kwn~gwm~d~l~y~~~dp~~r~~~h~~ltf~~~y~~~e~fvlp~SH 528 (730)
T PRK12568 449 IASQFPGVLTIAEESTAWPGVTAPISDGGLGFTHKWNMGWMHDTLHYMQRDPAERAHHHSQLTFGLVYAFSERFVLPLSH 528 (730)
T ss_pred HHHHCCCeEEEEEcCCCCccccccccCCCCCcCcEeCChhHHHHHHHHhhCchhhhhhhhhhhhhhhhhhhccEeccCCC
Confidence 9999999999999999999999999999999999999 99876
Q ss_pred -----CCCc--------------------------------------------------------------HHHHHHHHH
Q psy9001 495 -----SDMT--------------------------------------------------------------VGTFDAAMN 507 (1351)
Q Consensus 495 -----~~~s--------------------------------------------------------------l~~f~k~L~ 507 (1351)
+|++ +++|+|+||
T Consensus 529 DEvvhgk~sl~~kmpGd~~~k~a~lR~~~~~~~~~PGkkLlFmG~Efgq~~ew~~~~~ldW~ll~~~~h~~~~~~~~dLn 608 (730)
T PRK12568 529 DEVVHGTGGLLGQMPGDDWRRFANLRAYLALMWAHPGDKLLFMGAEFGQWADWNHDQSLDWHLLDGARHRGMQQLVGDLN 608 (730)
T ss_pred cccccCchhhhhcCCCCHHHHHHHHHHHHHHHHhCCCcceeeCchhhCCcccccCCCCccccccCChhHHHHHHHHHHHH
Confidence 1111 378999999
Q ss_pred HhhhcccccccC------CcceEeecCCCcEEEEEeC-------ceEEEEeCCCCCcccccccccccCcccccccccccc
Q psy9001 508 TTEERFKWLSAD------PGYVSTKHEGDKVIIFERA-------GLLFAFNFNGTQSFTDYRYCSTQSYSTHNTWTWRGS 574 (1351)
Q Consensus 508 ~Lr~~~~~L~~g------~~~~~~~~~~~~Vlaf~R~-------~ll~v~Nf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (1351)
+||+++|+|... ..|+...+.+++|++|.|. .||||+||+|. .+.+|+
T Consensus 609 ~ly~~~paL~~~d~~~~gf~wi~~~d~~~sv~af~R~~~~~~~~~v~vV~Nft~~-~~~~Y~------------------ 669 (730)
T PRK12568 609 AALRRTPALYRGTHRADGFDWSVADDARNSVLAFIRHDPDGGGVPLLAVSNLTPQ-PHHDYR------------------ 669 (730)
T ss_pred HHHHhChhhhcccCCCCCeEEEeCCCCCCcEEEEEEecCCCCCCeEEEEECCCCC-CccCeE------------------
Confidence 999999999543 3455666778889999996 29999999998 788888
Q ss_pred cccceEeeeccCCceEEEccCCCCccCcccccCCCCceeeeecccCCcccEEEEEeCCcEEEEEEEC
Q psy9001 575 ISKLHRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGLILTTS 641 (1351)
Q Consensus 575 ~~~~~~v~v~~~g~~~~vlnsD~~~ygG~~~~~~~~~~~~~~~~~~g~~~si~l~LPpls~~vl~~~ 641 (1351)
||||.+|+|++|||||+..|||++.+|.+ .+.+++.++||+++||+|+||||+++||++.
T Consensus 670 ------ig~p~~G~~~eilNsd~~~ygG~~~~n~~-~~~~~~~~~~g~~~s~~i~lppl~~~~~~~~ 729 (730)
T PRK12568 670 ------VGVPRAGGWREILNTDSAHYGGSNLGNSG-RLATEPTGMHGHAQSLRLTLPPLATIYLQAE 729 (730)
T ss_pred ------ECCCCCCeEEEEEcCchhhhCCCCcCCCC-ceeecccccCCCccEEEEEeCCCEEEEEEEC
Confidence 99999999999999999999999998876 4789999999999999999999999999985
No 3
>PRK14705 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.2e-80 Score=799.43 Aligned_cols=459 Identities=27% Similarity=0.501 Sum_probs=400.9
Q ss_pred CceeEEE-----EEEEEEEeecCCCCccccceeec-CCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeeccCCcc
Q psy9001 67 KAGLLCF-----MHVVCAAGDFNNWNREEFAYKKL-DFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWA 140 (1351)
Q Consensus 67 ~~gv~F~-----A~~V~LvGDFN~Wd~~~~~M~k~-~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPyA 140 (1351)
..||+|+ |++|+|+||||+|++..++|++. .+|+|+++||++.+| ..|||+|++.+|++..+.||||
T Consensus 637 ~~Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~~~~GvW~~fipg~~~G-------~~Yky~i~~~~g~~~~k~DPyA 709 (1224)
T PRK14705 637 VDGVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSLGSSGVWELFIPGVVAG-------ACYKFEILTKAGQWVEKADPLA 709 (1224)
T ss_pred CCeEEEEEECCCCCEEEEEEEecCCCCCcccceECCCCCEEEEEECCCCCC-------CEEEEEEEcCCCcEEecCCccc
Confidence 5699999 99999999999999999999984 579999999998776 5999999998899899999999
Q ss_pred eEEecCCC-Cccceee-eeeCCCCCCCCccCCCCC---CCCCCceEEEEecCCccCCCCCCCHHHHHHhhhHHHHHcCCC
Q psy9001 141 TYVTEPPV-VGHAYEQ-RIWNPKPQDKHKWTSSKP---KKPDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMA 215 (1351)
Q Consensus 141 ~~~~~~~~-~~~~~~~-~~~~p~~~~~~~w~~~~p---~~~~~~vIYE~hvr~ft~~~~~G~~~gi~~~~L~yLk~LGvt 215 (1351)
+.++.++. +|+|++. ..|+++ .|...+. +..++++|||+|+|+|+. .++|+++++++|||||+||||
T Consensus 710 ~~~e~~p~~aS~V~d~~~~w~d~-----~W~~~r~~~~~~~~p~~IYEvHvgsf~~---~~~~~~l~~~lldYlk~LGvt 781 (1224)
T PRK14705 710 FGTEVPPLTASRVVEASYAFKDA-----EWMSARAERDPHNSPMSVYEVHLGSWRL---GLGYRELAKELVDYVKWLGFT 781 (1224)
T ss_pred cccccCCCCCeEEeCCCCCcCCh-----hhhhccccCCCCcCCcEEEEEEeccccc---CCchHHHHHHHHHHHHHhCCC
Confidence 99999885 5666652 234333 4554443 235789999999999987 389999999988999999999
Q ss_pred cCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccc
Q psy9001 216 IPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACE 295 (1351)
Q Consensus 216 ~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~ 295 (1351)
| ||||| ++|+ |..+| |||++++|| +|+
T Consensus 782 ~----IeLmP--------------------v~e~--p~~~s-----wGY~~~~y~---------------------ap~- 808 (1224)
T PRK14705 782 H----VEFMP--------------------VAEH--PFGGS-----WGYQVTSYF---------------------APT- 808 (1224)
T ss_pred E----EEECc--------------------cccC--CCCCC-----CCCCccccC---------------------CcC-
Confidence 9 99999 5555 65555 999999999 888
Q ss_pred cCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCC-CCCCCC
Q psy9001 296 KFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGP-RGTHPL 374 (1351)
Q Consensus 296 ~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~-~~~~~~ 374 (1351)
++||+++|||+||++||++||+||||||+||++.+ .+++..|+|. +.|++.++ .+.+++
T Consensus 809 ------------------~ryGt~~dfk~lVd~~H~~GI~VILD~V~nH~~~d-~~~l~~fdg~-~~y~~~d~~~g~~~~ 868 (1224)
T PRK14705 809 ------------------SRFGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKD-SWALAQFDGQ-PLYEHADPALGEHPD 868 (1224)
T ss_pred ------------------cccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcc-hhhhhhcCCC-cccccCCcccCCCCC
Confidence 99999999999999999999999999999999987 5778889986 34554444 477899
Q ss_pred CCCccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHH
Q psy9001 375 WDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLH 454 (1351)
Q Consensus 375 w~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~ 454 (1351)
|++..||+++++||+||+++++||++||||||||||++.+|+|.|+++..+.+ ..+.+|+++|.+++.||+++|+.|+
T Consensus 869 Wg~~~fn~~~~eVr~fli~~a~~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w--~pn~~gg~en~~ai~fl~~ln~~v~ 946 (1224)
T PRK14705 869 WGTLIFDFGRTEVRNFLVANALYWLDEFHIDGLRVDAVASMLYLDYSREEGQW--RPNRFGGRENLEAISFLQEVNATVY 946 (1224)
T ss_pred CCCceecCCCHHHHHHHHHHHHHHHHHhCCCcEEEeehhhhhhcccccccccc--cccccCCccChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998877654 3577899999999999999999999
Q ss_pred hhCCCeEEEEEcCCCCCCcccccccCCCCCCCcCC--cCCCC--------------------------------------
Q psy9001 455 DKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLE--IRPDM-------------------------------------- 494 (1351)
Q Consensus 455 ~~~P~~~~iaE~~~~~p~~~~~~~~gg~gfd~~~~--~~~d~-------------------------------------- 494 (1351)
+.+|++++|||+++.+|.+++|++.||+||||+|| ||+|+
T Consensus 947 ~~~p~~~~IAEest~~p~vt~p~~~GGlGFd~kWnmgwmhd~l~Y~~~dp~~r~~~~~~ltf~~~ya~~e~fvl~~SHDe 1026 (1224)
T PRK14705 947 KTHPGAVMIAEESTAFPGVTAPTSHGGLGFGLKWNMGWMHDSLKYASEDPINRKWHHGTITFSLVYAFTENFLLPISHDE 1026 (1224)
T ss_pred HHCCCeEEEEEcCCCCcCccccccCCCccCCcEecchhhHHHHHHhhhCcchhhcccchHHHHHHHHhhcCEeccccccc
Confidence 99999999999999999999999999999999999 99854
Q ss_pred ---CCC--------------------------------------------------------------cHHHHHHHHHHh
Q psy9001 495 ---SDM--------------------------------------------------------------TVGTFDAAMNTT 509 (1351)
Q Consensus 495 ---~~~--------------------------------------------------------------sl~~f~k~L~~L 509 (1351)
++. .++.|+|+||+|
T Consensus 1027 vvhgk~sl~~km~Gd~~~k~a~lR~~~a~~~~~PGk~LlFMG~Efgq~~ew~~~~~LdW~ll~~~~h~~~~~~~rdLn~l 1106 (1224)
T PRK14705 1027 VVHGKGSMLRKMPGDRWQQLANLRAFLAYQWAHPGKQLIFMGTEFGQEAEWSEQHGLDWFLADIPAHRGIQLLTKDLNEL 1106 (1224)
T ss_pred ccccchhHHHhCCCcHHHHHHHHHHHHHHHHhcCCcCEEECccccCCCCCccccccCCCcccCChhhHHHHHHHHHHHHH
Confidence 111 127799999999
Q ss_pred hhcccccccCC------cceEeecCCCcEEEEEeC-----ceEEEEeCCCCCcccccccccccCcccccccccccccccc
Q psy9001 510 EERFKWLSADP------GYVSTKHEGDKVIIFERA-----GLLFAFNFNGTQSFTDYRYCSTQSYSTHNTWTWRGSISKL 578 (1351)
Q Consensus 510 r~~~~~L~~g~------~~~~~~~~~~~Vlaf~R~-----~ll~v~Nf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (1351)
|+++|+|...+ .|+...+.+++|++|.|. .||||+||+|. .+.+|+
T Consensus 1107 y~~~paL~~~d~~~~gf~wi~~~d~~~~vlaf~R~~~~~~~vlvv~Nftp~-~~~~y~---------------------- 1163 (1224)
T PRK14705 1107 YTSTPALYQRDNEPGGFQWINGGDADRNVLSFIRWDGDGNPLVCAINFSGG-PHKGYT---------------------- 1163 (1224)
T ss_pred HhcChhhhccCCCCCceEEeecCCCCCcEEEEEEeCCCCCEEEEEEcCCCC-CccCce----------------------
Confidence 99999996432 234445667889999996 49999999997 888888
Q ss_pred eEeeeccCCceEEEccCCCCccCcccccCCCCceeeeecccCCcccEEEEEeCCcEEEEEEEC
Q psy9001 579 HRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGLILTTS 641 (1351)
Q Consensus 579 ~~v~v~~~g~~~~vlnsD~~~ygG~~~~~~~~~~~~~~~~~~g~~~si~l~LPpls~~vl~~~ 641 (1351)
||||.+|.|++|||||+..|||++..|.+ .+++++.+|||+++||+|+||||+++||++.
T Consensus 1164 --igvp~~G~y~eilnsd~~~ygGsg~~n~~-~~~~~~~~~~g~~~s~~i~lPpl~~~~~~~~ 1223 (1224)
T PRK14705 1164 --LGVPAAGAWTEVLNTDHETYGGSGVLNPG-SLKATTEGQDGQPATLTVTLPPLGASFFAPA 1223 (1224)
T ss_pred --ECCCCCCeEEEEEeCchhhcCCCCcCCCC-ceeecccccCCCCceEEEEecCCEEEEEEEC
Confidence 99999999999999999999999999876 4788999999999999999999999999975
No 4
>PRK14706 glycogen branching enzyme; Provisional
Probab=100.00 E-value=2.8e-79 Score=759.14 Aligned_cols=484 Identities=28% Similarity=0.485 Sum_probs=403.5
Q ss_pred ChhhhhHhhhccc--ccCCCCCccccccccccccCceeEEE-----EEEEEEEeecCCCCccccceeecCCCeEEEEcCC
Q psy9001 35 TPEQLKYLVDECH--KAGLFGTPEQLKYLVDECHKAGLLCF-----MHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPP 107 (1351)
Q Consensus 35 ~~~~~~~~~~~~~--~~~~f~~~~~l~~l~~~~~~~gv~F~-----A~~V~LvGDFN~Wd~~~~~M~k~~~GvW~~~ip~ 107 (1351)
+++++.++++-.+ ..+.++.-. .......||+|+ |++|+|+||||+|++..+||++.++|+|+++||+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~lGah~-----~~~~~~~Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~~~GvW~~~vpg 82 (639)
T PRK14706 8 DHGHLQKLVTADLVRPDHLLGAHP-----ATEGGVEGVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRLDFGFWGAFVPG 82 (639)
T ss_pred CHHHHHHHHcCcccchhHhcCccC-----ccCCCcccEEEEEECCCCCEEEEEEecCCcccccccccccCCCEEEEEECC
Confidence 4566666666555 222233210 000112489999 9999999999999988899999888999999998
Q ss_pred CCCCCcccCcccEEEEEEEecCCceeeccCCcceEEecCCCCccceeeeeeCCCCCCCCccCCCC------CCCCCCceE
Q psy9001 108 NPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSK------PKKPDNLKI 181 (1351)
Q Consensus 108 ~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPyA~~~~~~~~~~~~~~~~~~~p~~~~~~~w~~~~------p~~~~~~vI 181 (1351)
+..| +.|+|+|++.+|....++||||++++.++.. .++++++ .|+|.+.. ++..++++|
T Consensus 83 ~~~g-------~~Yky~I~~~~g~~~~~~DPYa~~~~~~~~~----~svv~~~----~~~w~d~~w~~~~~~~~~~~~~I 147 (639)
T PRK14706 83 ARPG-------QRYKFRVTGAAGQTVDKMDPYGSFFEVRPNT----ASIIWED----RFEWTDTRWMSSRTAGFDQPISI 147 (639)
T ss_pred CCCC-------CEEEEEEECCCCCEEeccCcceEEEecCCCC----ceEECCC----CCCCCCcccccccCCccCCCcEE
Confidence 7655 6999999988888889999999999988763 2223333 26676543 223467999
Q ss_pred EEEecCCccCC--CCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCc
Q psy9001 182 YESHVGICTQE--QKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQ 259 (1351)
Q Consensus 182 YE~hvr~ft~~--~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~ 259 (1351)
||+|||+|+.. +..|+|+++++++++|||+||||| ||||| +.|+ |..++
T Consensus 148 YE~Hvg~f~~~~~g~~~ty~~~~~~l~~ylk~lG~t~----velmP--------------------v~e~--~~~~~--- 198 (639)
T PRK14706 148 YEVHVGSWARRDDGWFLNYRELAHRLGEYVTYMGYTH----VELLG--------------------VMEH--PFDGS--- 198 (639)
T ss_pred EEEehhhcccCCCCCccCHHHHHHHHHHHHHHcCCCE----EEccc--------------------hhcC--CCCCC---
Confidence 99999999753 457899999999779999999999 99999 5565 55555
Q ss_pred cccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEE
Q psy9001 260 ALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLD 339 (1351)
Q Consensus 260 ~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILD 339 (1351)
|||++++|| +|+ ++||+++|||+||++||++||+||||
T Consensus 199 --wGY~~~~~~---------------------~~~-------------------~~~g~~~~~~~lv~~~H~~gi~VilD 236 (639)
T PRK14706 199 --WGYQVTGYY---------------------APT-------------------SRLGTPEDFKYLVNHLHGLGIGVILD 236 (639)
T ss_pred --CCcCccccc---------------------ccc-------------------cccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 999999999 888 99999999999999999999999999
Q ss_pred eeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHcCCCcccccccccccccc
Q psy9001 340 VVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHN 419 (1351)
Q Consensus 340 vV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~ 419 (1351)
||+||++.+ ..++..|+|..-++|.....+.+.+|++..||+++|+||+||+++++||++||||||||||++.+|+|.+
T Consensus 237 ~v~nH~~~~-~~~l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~iDG~R~Dav~~~ly~d 315 (639)
T PRK14706 237 WVPGHFPTD-ESGLAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFHVDGLRVDAVASMLYLD 315 (639)
T ss_pred ecccccCcc-hhhhhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeehheeecc
Confidence 999999987 4567778886433344444567789999889999999999999999999999999999999999999988
Q ss_pred CCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCCcccccccCCCCCCCcCC--cCCCC---
Q psy9001 420 HGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLE--IRPDM--- 494 (1351)
Q Consensus 420 ~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~~~~p~~~~~~~~gg~gfd~~~~--~~~d~--- 494 (1351)
++++. | ..+++|+++|.+++.||+++|+.+++.+|++++|||+++.+|.++.|++. |+|||++|+ ||++.
T Consensus 316 ~~~~~-~---~~~~~gg~~n~~a~~fl~~ln~~v~~~~p~~~~iAE~~~~~~~v~~~~~~-G~gFD~~w~~~w~~~~l~~ 390 (639)
T PRK14706 316 FSRTE-W---VPNIHGGRENLEAIAFLKRLNEVTHHMAPGCMMIAEESTSFPGVTVPTPY-GLGFDYKWAMGWMNDTLAY 390 (639)
T ss_pred cCccc-c---cccccCCcccHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCcCcccccCC-CCccccEeccHHHHHHHHH
Confidence 87643 2 56788999999999999999999999999999999999999999999975 999999999 77643
Q ss_pred --------------------------------------CCC---------------------------------------
Q psy9001 495 --------------------------------------SDM--------------------------------------- 497 (1351)
Q Consensus 495 --------------------------------------~~~--------------------------------------- 497 (1351)
+++
T Consensus 391 ~~~~~~~r~~~~~~lt~~~~y~~~e~~il~~SHDev~~~k~sl~~k~~g~~~~~~a~~r~~~~~~~t~PG~pLiFmG~Ef 470 (639)
T PRK14706 391 FEQDPLWRKYHHHKLTFFNVYRTSENYVLAISHDEVVHLKKSMVMKMPGDWYTQRAQYRAFLAMMWTTPGKKLLFMGQEF 470 (639)
T ss_pred hccCchhhhhchhccchhhhhhccccEecCCCCccccCCccchHhHcCCCHHHHHHHHHHHHHHHHhCCCCcEEEecccc
Confidence 011
Q ss_pred -----------------------cHHHHHHHHHHhhhcccccccCC------cceEeecCCCcEEEEEeC------ceEE
Q psy9001 498 -----------------------TVGTFDAAMNTTEERFKWLSADP------GYVSTKHEGDKVIIFERA------GLLF 542 (1351)
Q Consensus 498 -----------------------sl~~f~k~L~~Lr~~~~~L~~g~------~~~~~~~~~~~Vlaf~R~------~ll~ 542 (1351)
.|.+|+|+||+||+++++|..++ .++...+.+++|+||.|. .|||
T Consensus 471 G~~~ew~~~~~l~W~l~~~~~~~~l~~~~k~L~~L~k~~paL~~gd~~~~~f~wi~~~d~~~~VlaF~R~~~~~~~~vlv 550 (639)
T PRK14706 471 AQGTEWNHDASLPWYLTDVPDHRGVMNLVRRLNQLYRERPDWHRGDKREEGLYWVSADDTDNSVYAYVRRDSESGAWSLA 550 (639)
T ss_pred CCCCCCCcccCCCCcccCCHHHHHHHHHHHHHHHHHHhCHHHhhCCCCCCCeEEEEeecCCCCEEEEEEecCCCCeeEEE
Confidence 13679999999999999997553 234455667889999997 2999
Q ss_pred EEeCCCCCcccccccccccCcccccccccccccccceEeeeccCCceEEEccCCCCccCcccccCCCCceeeeecccCCc
Q psy9001 543 AFNFNGTQSFTDYRYCSTQSYSTHNTWTWRGSISKLHRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNR 622 (1351)
Q Consensus 543 v~Nf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g~~~~vlnsD~~~ygG~~~~~~~~~~~~~~~~~~g~ 622 (1351)
|+||+|. .+.+|+ ||||.+|+|++|||||+..|||+++.|. .+.+.+.+|+|+
T Consensus 551 V~Nfs~~-~~~~y~------------------------ig~p~~g~~~~i~nsd~~~~gG~g~~n~--~~~~~~~~~~g~ 603 (639)
T PRK14706 551 VANLTPV-YREQYR------------------------IGVPQGGEYRVLLSTDDGEYGGFGTQQP--DLMASQEGWHGQ 603 (639)
T ss_pred EEeCCCC-CcCCeE------------------------ECCCCCCeEEEEEcCCccccCCCCCCCC--ceeccccccCCC
Confidence 9999996 788888 9999999999999999999999998885 368888899999
Q ss_pred ccEEEEEeCCcEEEEEEECC
Q psy9001 623 RNSIKLYLPTRTGLILTTSP 642 (1351)
Q Consensus 623 ~~si~l~LPpls~~vl~~~~ 642 (1351)
++||+|+|||++++||++++
T Consensus 604 ~~si~i~lp~~~~~~~~~~~ 623 (639)
T PRK14706 604 PHSLSLNLPPSSVLILEFVG 623 (639)
T ss_pred ccEEEEEeCCcEEEEEEECC
Confidence 99999999999999999874
No 5
>PLN02960 alpha-amylase
Probab=100.00 E-value=9.1e-77 Score=731.66 Aligned_cols=432 Identities=40% Similarity=0.743 Sum_probs=371.0
Q ss_pred cccCcccEEEEEEEecCCceeeccCCcceEEecCCCCccceeeeeeCCCCCCCCccCCCCCCCCCCceEEEEecCCccCC
Q psy9001 113 CKLTHLSQVKLVVRNQHGHLLDRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQE 192 (1351)
Q Consensus 113 ~~~~~g~~Y~y~i~~~~g~~~~~~DPyA~~~~~~~~~~~~~~~~~~~p~~~~~~~w~~~~p~~~~~~vIYE~hvr~ft~~ 192 (1351)
+.+.||++|+|+|++.+|. ..++||||++++..+. +.....++|+|.....|+|++.+|+.+.+++|||+|||+|+.+
T Consensus 332 p~~~hG~~Yky~v~~~~g~-~~~vdpyA~~~qp~~~-~~~~~~v~~d~~~~~~y~W~~~~p~~~~~~vIYElHvg~~~~e 409 (897)
T PLN02960 332 PAIPHGSKYRVYFNTPDGP-LERVPAWATYVLPDPD-GKQWYAIHWEPPPEEAYKWKFERPKVPKSLRIYECHVGISGSE 409 (897)
T ss_pred cCCCCCCEEEEEEEeCCCc-eEECCCcceeEeecCC-CccceEEEeCCCCCCCCCCCCCCCCCCCCcEEEEEecccccCC
Confidence 3467889999999987765 6789999999976553 2222345667643347999988877778999999999999988
Q ss_pred CCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCccccccccc
Q psy9001 193 QKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLM 272 (1351)
Q Consensus 193 ~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~ 272 (1351)
+..|||+++++++|||||+||||| |||||| .|+ +...+ |||++++||
T Consensus 410 ~~~gtf~~~~e~~LdYLk~LGvt~----IeLmPv--------------------~e~--~~~~s-----wGY~~~~yf-- 456 (897)
T PLN02960 410 PKISSFKEFTQKVLPHVKKAGYNA----IQLIGV--------------------QEH--KDYSS-----VGYKVTNFF-- 456 (897)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCE----EEECCc--------------------ccC--CCCCC-----CCCCcccCC--
Confidence 889999999998899999999999 999994 444 44445 999999999
Q ss_pred chhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCC
Q psy9001 273 DKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG 352 (1351)
Q Consensus 273 ~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~ 352 (1351)
+|+ ++||+++|||+||++||++||+||||||+||++.++..+
T Consensus 457 -------------------a~~-------------------~~yGtp~dfk~LVd~aH~~GI~VILDvV~NH~~~d~~~~ 498 (897)
T PLN02960 457 -------------------AVS-------------------SRFGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVG 498 (897)
T ss_pred -------------------Ccc-------------------cccCCHHHHHHHHHHHHHCCCEEEEEecccccCCccccc
Confidence 888 899999999999999999999999999999999986677
Q ss_pred cccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccc
Q psy9001 353 LNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDE 432 (1351)
Q Consensus 353 ~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~ 432 (1351)
+..|+|....||+.+..+.+..|++..||+++++||+||+++++||++||||||||||++++|+|.++|. ..+.+.+..
T Consensus 499 L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~EyhIDGfR~DAV~sMlY~d~g~-~~~~G~~~~ 577 (897)
T PLN02960 499 LSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYRVDGFQFHSLGSMLYTHNGF-ASFTGDLDE 577 (897)
T ss_pred hhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHCCCceeecccceeeeeccCc-cccCCcccc
Confidence 8889998667888777777889999999999999999999999999999999999999999999988764 223332233
Q ss_pred cCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCCcccccccCCCCCCCcCC--cCCCC----------------
Q psy9001 433 YFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLE--IRPDM---------------- 494 (1351)
Q Consensus 433 ~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~~~~p~~~~~~~~gg~gfd~~~~--~~~d~---------------- 494 (1351)
++...+|.+++.||+++|+.+++..|++++|||+++++|.++.|.+.||+||||+|+ |+++.
T Consensus 578 ~~n~~~d~~Ai~fL~~lN~~v~~~~P~vilIAEdss~~P~vt~P~~~GGLGFDYkwnmG~~~d~l~~l~~~~~r~~~~~~ 657 (897)
T PLN02960 578 YCNQYVDRDALIYLILANEMLHQLHPNIITIAEDATFYPGLCEPTSQGGLGFDYYVNLSPSEMWLSLLENVPDQEWSMSK 657 (897)
T ss_pred cCCccCCchHHHHHHHHHHHHHhhCCCeEEEEECCCCCCCccccCCCCCCCcccccCCCcHHHHHHHHHhCcCCCCChhc
Confidence 333457899999999999999999999999999999999999999999999999998 64322
Q ss_pred ---------------------------CCC--------------------------------------------------
Q psy9001 495 ---------------------------SDM-------------------------------------------------- 497 (1351)
Q Consensus 495 ---------------------------~~~-------------------------------------------------- 497 (1351)
+++
T Consensus 658 l~~s~~~~~~~~~~~v~Y~EnHDQVv~Gkrsl~~rL~g~~~~k~~~~~~~~lRa~al~~~~rllt~~~~Pg~pLlFMG~E 737 (897)
T PLN02960 658 IVSTLVKNKENADKMLSYAENHNQSISGGKSFAEILLGKNKESSPAVKELLLRGVSLHKMIRLITFTLGGSAYLNFMGNE 737 (897)
T ss_pred cEeeeccCcCCcceEEEEecCcCccccCcccHHHHCCCchhhhhcccChhhhhhhhHHHHHHHHHHHhCCCCCEeeCccc
Confidence 000
Q ss_pred ----------------------------------cHHHHHHHHHHhhhcccccccCCcceEeecCCCcEEEEEeCceEEE
Q psy9001 498 ----------------------------------TVGTFDAAMNTTEERFKWLSADPGYVSTKHEGDKVIIFERAGLLFA 543 (1351)
Q Consensus 498 ----------------------------------sl~~f~k~L~~Lr~~~~~L~~g~~~~~~~~~~~~Vlaf~R~~ll~v 543 (1351)
.+++|+|+||+||+++|+|..+..++...+.+++||+|.|..||||
T Consensus 738 FGh~e~~~~PdP~n~~tf~~s~LdW~Ll~~~~h~~l~~f~rdL~~Lr~~~paL~~g~~~i~~~d~~~~Viaf~R~~llvV 817 (897)
T PLN02960 738 FGHPERVEFPRASNNFSFSLANRRWDLLEDGVHAHLFSFDKALMALDEKYLILSRGLPNIHHVNDTSMVISFTRGPLLFA 817 (897)
T ss_pred cCChhhhhCcCCCCccccccccCCcccccChhHHHHHHHHHHHHHHHhcChhhcCCcceeeeecCCCCEEEEEeCCeEEE
Confidence 1256999999999999999998888777788889999999999999
Q ss_pred EeCCCCCcccccccccccCcccccccccccccccceEeeeccCCceEEEccCCCCccCcccccCCCCce-eeeecccCCc
Q psy9001 544 FNFNGTQSFTDYRYCSTQSYSTHNTWTWRGSISKLHRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVY-ETYPEPWNNR 622 (1351)
Q Consensus 544 ~Nf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g~~~~vlnsD~~~ygG~~~~~~~~~~-~~~~~~~~g~ 622 (1351)
+||+|.+++.+|+ ||||.+|+|++|||||+..|||+++.+..... .++..++||+
T Consensus 818 ~NFsp~~~~~~Y~------------------------vgvP~~G~y~eilNSD~~~yGG~g~~~~~~~~~~t~~~~~~g~ 873 (897)
T PLN02960 818 FNFHPTNSYEEYE------------------------VGVEEAGEYELILNTDEVKYGGQGRLTEDQYLQRTKSKRIDGL 873 (897)
T ss_pred EeCCCCCcCcCce------------------------ECCCCCCcEEEEEeCchhhcCCCCccCCCcceeeccccccCCC
Confidence 9999976788888 99999999999999999999999988765433 5778899999
Q ss_pred ccEEEEEeCCcEEEEEEECC
Q psy9001 623 RNSIKLYLPTRTGLILTTSP 642 (1351)
Q Consensus 623 ~~si~l~LPpls~~vl~~~~ 642 (1351)
++||+|+|||++++||++.+
T Consensus 874 ~~si~i~LPp~sa~v~k~~~ 893 (897)
T PLN02960 874 RNCLELTLPSRSAQVYKLAR 893 (897)
T ss_pred CceEEEEeCCCEEEEEEEee
Confidence 99999999999999999864
No 6
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=100.00 E-value=2.3e-74 Score=713.36 Aligned_cols=492 Identities=39% Similarity=0.675 Sum_probs=399.0
Q ss_pred ccCCceeehhchhhhhccchhhHHHHhhhccccceeecCCcEEEEeecCCccEEEEEec-chhhhHHHhhcccccccccc
Q psy9001 666 LGDNGILLMMNYSSINSSIGGIEKFTTSYNKYGIHVQADNSVRCFEWAPSAQQLYLTGY-NAVQLMAIMEHAYYASFGYQ 744 (1351)
Q Consensus 666 ~~~~~~~~~~~~~~i~~~~~~~~~f~~~y~~~G~~~~~~~~~~~~~WaP~A~~v~l~~~-~~~~~~~~~~~~~~~~~~~~ 744 (1351)
|.++.......+.+|+++||||++|+++|++||+|+.++ +|+||||||+|++|+|+|+ |+|+
T Consensus 76 ~~~r~~~~~~~~~~i~~~~~~l~~f~~~y~~lGa~~~~~-g~~FrvWAP~A~~V~LvGdFN~W~---------------- 138 (758)
T PLN02447 76 LRYRYSRYRRRREEIEKNEGGLEAFSRGYEKFGFNRSEG-GITYREWAPGAKAAALIGDFNNWN---------------- 138 (758)
T ss_pred HHHHHHHHHHHHHHHhhcCCCHHHHHHHHHhceeEEecC-CEEEEEECCCCCEEEEEEecCCCC----------------
Confidence 445667778889999999999999999999999999885 5999999999999999995 6641
Q ss_pred ccccccCCccccCCCCCCCCCCcccccccccccCCCCCCcccccccc-ccccEEeeecccccCCCCceeeecCCcccccc
Q psy9001 745 VTSFFAASSRTMGNSQSVDPASIHIPELHKLLERDPYLNPYQYEMKR-RYGLMVNFLEQFEKHEDPASIHIPELHKLLER 823 (1351)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~-~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 823 (1351)
...++|++ ++|+| +++||+ .+|.+.
T Consensus 139 ---------------------------------------~~~~~M~~~~~GvW--------------e~~ip~-~~g~~~ 164 (758)
T PLN02447 139 ---------------------------------------PNAHWMTKNEFGVW--------------EIFLPD-ADGSPA 164 (758)
T ss_pred ---------------------------------------CCccCceeCCCCEE--------------EEEECC-cccccc
Confidence 12356865 59999 999998 888888
Q ss_pred CCCCCCeEEEEEecCCceeeEEEecCcceEEEecCCC-CCeeeeeeeeCCCCCCCCccccCCCCCCCCceEEEeecCCcc
Q psy9001 824 DPYLNPYQYEMKRRYGLMVNFLEQLSPWATYVTEPPV-VGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICT 902 (1351)
Q Consensus 824 ~~~~~~y~~~~~~~~~~~~~~~~~~dPya~~v~~~~~-~~~~~d~~~~~p~~~~~~~w~~~~p~~p~d~iIYE~HV~~~s 902 (1351)
++||++|+|+|+..+| ++.+++||||+++++++. .+++++..+|+|+.+++|.|++++|++|.+++|||+|||.++
T Consensus 165 ~~~G~~Yky~i~~~~g---~~~~r~dpya~~~~~~p~~~~~~~~svv~dp~~~~~y~w~~~~~~~~~~~~IYE~Hvg~~~ 241 (758)
T PLN02447 165 IPHGSRVKIRMETPDG---RWVDRIPAWIKYAVQAPGEIGAPYNGVYWDPPEEEKYVFKHPRPPRPAALRIYEAHVGMSS 241 (758)
T ss_pred CCCCCEEEEEEEeCCC---cEEeecCchHheeeccCCccCCCCceEEeCCCCCCCCCCCCCCCCCCCCCEEEEEeCCccc
Confidence 9999999999999888 789999999999998753 356789999999876789999998878889999999999999
Q ss_pred cCCCcccccccccccccceeccCCCcccccccccccccCCceEEEecCCCCCCCCcccccCccceecCCccceeeecCCC
Q psy9001 903 QEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWNREEFAYKKLDFGKWELVLPPN 982 (1351)
Q Consensus 903 ~~~~~gty~~f~~~~lp~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~~~~~~y~~~d~gy~~~~~pp~ 982 (1351)
.++++|||++|++..||+||+|| ||. ++||
T Consensus 242 ~~~~~gty~~~~~~~L~ylk~LG-~t~---------------I~Lm---------------------------------- 271 (758)
T PLN02447 242 EEPKVNSYREFADDVLPRIKALG-YNA---------------VQLM---------------------------------- 271 (758)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcC-CCE---------------EEEC----------------------------------
Confidence 88899999999999999999999 442 2333
Q ss_pred CCCCccccccCcceeeecccCCCCCCCCCCcccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCC
Q psy9001 983 PDGSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN 1061 (1351)
Q Consensus 983 ~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~ 1061 (1351)
+..++.+ ..+||| +++||+++|+|||++|||+||++||++||+||||||+||++.+
T Consensus 272 ----------------Pi~e~~~-------~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~nH~~~~ 328 (758)
T PLN02447 272 ----------------AIQEHAY-------YGSFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLGLRVLMDVVHSHASKN 328 (758)
T ss_pred ----------------CccccCC-------CCCCCcCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccccccc
Confidence 1111111 135888 8999999999999999999999999999999999999999998
Q ss_pred ccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCC
Q psy9001 1062 VLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSG 1141 (1351)
Q Consensus 1062 ~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~ 1141 (1351)
+..++..|+++...||+.++.+.+..|++.+||+++++||+||+++++||++||||||||||+|.+|+|.+||++.+|++
T Consensus 329 ~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~ 408 (758)
T PLN02447 329 TLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTG 408 (758)
T ss_pred ccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhCcccccccchhhhhccccCccccccc
Confidence 87788899998888998877788888988899999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCc
Q psy9001 1142 HYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAG 1221 (1351)
Q Consensus 1142 ~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~ 1221 (1351)
.+++|||++.|.+++.||+++|+.|++.+|++++|||+++++|.+|+|..+||+||||+|++.. .+
T Consensus 409 ~~~~~~g~~~d~~a~~fL~~~N~~i~~~~p~~~~IAEd~s~~p~l~~p~~~GGlGFDykw~Mg~--------------~~ 474 (758)
T PLN02447 409 NYNEYFGMATDVDAVVYLMLANDLLHGLYPEAVTIAEDVSGMPTLCRPVQEGGVGFDYRLAMAI--------------PD 474 (758)
T ss_pred CcccccCCccChHHHHHHHHHHHHHHHhCCCeEEEEEcCCCCCCccccCCCCcCCcceEECCcc--------------ch
Confidence 9999999999999999999999999999999999999999999999999999999999999833 33
Q ss_pred hhHhhhccCCCCCCCccccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCcccc----c------
Q psy9001 1222 KYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNENNM----K------ 1291 (1351)
Q Consensus 1222 ~~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~----~------ 1291 (1351)
.+...++.+. .+...-. .+.+... .| ....++ |.|..+||+.......+ .
T Consensus 475 ~~l~~l~~~~--d~~~~~~--~l~~sl~-----~r------~~~E~~-----I~y~eSHDevv~Gkksl~~~l~d~~my~ 534 (758)
T PLN02447 475 KWIELLKEKR--DEDWSMG--DIVHTLT-----NR------RYTEKC-----VAYAESHDQALVGDKTIAFWLMDKEMYD 534 (758)
T ss_pred HHHHHHhhCC--CcccCHH--HHHHHHh-----cc------cccCce-----EeccCCcCeeecCcchhHhhhcchhhhh
Confidence 4444553321 1110000 0111111 00 011233 78899999976533332 1
Q ss_pred ccCC-----H------HHHHHHHHHHHccCCc-cEEEee-cccCCCCcc--------ceeeccCCcce
Q psy9001 1292 RYIQ-----T------ESNMNGFGIQTLPTQS-PLYLVA-KIEKPCSTR--------EVVKAPLPFGV 1338 (1351)
Q Consensus 1292 ~~~~-----~------~~~r~A~allltspGi-P~If~g-~~~~~~~~~--------~~~~~p~~~~~ 1338 (1351)
.+.. . ...|+..+++++.||. +|+||| |+.++++.. ..-..++.|+.
T Consensus 535 ~m~~~~~~~~~~~R~~~lhkmirl~~~~~pG~g~L~FMGnEFg~~ew~Dfpr~~n~ws~~~~~~~W~L 602 (758)
T PLN02447 535 GMSTLTPATPVVDRGIALHKMIRLITMALGGEGYLNFMGNEFGHPEWIDFPREGNGWSYDKCRRRWDL 602 (758)
T ss_pred cCCCChhhhhhHHHHHHHHHHHHHHHHhCCCCcceeecccccCCchhccCcccccccCcccccCCccc
Confidence 1111 0 1134456789999999 799999 888886422 12345788876
No 7
>PRK05402 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.4e-71 Score=705.58 Aligned_cols=460 Identities=31% Similarity=0.561 Sum_probs=387.9
Q ss_pred CceeEEE-----EEEEEEEeecCCCCccccceeec-CCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeeccCCcc
Q psy9001 67 KAGLLCF-----MHVVCAAGDFNNWNREEFAYKKL-DFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWA 140 (1351)
Q Consensus 67 ~~gv~F~-----A~~V~LvGDFN~Wd~~~~~M~k~-~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPyA 140 (1351)
..||+|+ |++|+|+||||+|++..++|++. ++|+|+++||++..| ..|+|+|+..+|....+.||||
T Consensus 130 ~~gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~~~~Gvw~~~i~~~~~g-------~~Y~y~v~~~~g~~~~~~DPYa 202 (726)
T PRK05402 130 VSGVRFAVWAPNARRVSVVGDFNGWDGRRHPMRLRGESGVWELFIPGLGEG-------ELYKFEILTADGELLLKADPYA 202 (726)
T ss_pred CCcEEEEEECCCCCEEEEEEEcCCCCCccccceEcCCCCEEEEEeCCCCCC-------CEEEEEEeCCCCcEeecCCCce
Confidence 4799999 99999999999999888999997 789999999987655 5999999987888889999999
Q ss_pred eEEecCCC-CccceeeeeeCCCCCCCCccCCC-----CC---CCCCCceEEEEecCCccC---CCCCCCHHHHHHhhhHH
Q psy9001 141 TYVTEPPV-VGHAYEQRIWNPKPQDKHKWTSS-----KP---KKPDNLKIYESHVGICTQ---EQKCASYEDFVRVVIPR 208 (1351)
Q Consensus 141 ~~~~~~~~-~~~~~~~~~~~p~~~~~~~w~~~-----~p---~~~~~~vIYE~hvr~ft~---~~~~G~~~gi~~~~L~y 208 (1351)
++++.++. .|++ ++++ .|+|+++ |+ +..++++|||+|||+|+. ++..|+|+++++++|||
T Consensus 203 ~~~~~~~~~~s~v-----~d~~---~~~w~~~~~~~~~~~~~~~~~~~~iYe~hv~~f~~~~~~~~~g~~~~i~~~l~~y 274 (726)
T PRK05402 203 FAAEVRPATASIV-----ADLS---QYQWNDAAWMEKRAKRNPLDAPISIYEVHLGSWRRHEDGGRFLSYRELADQLIPY 274 (726)
T ss_pred EEEecCCCCcEEE-----eCCc---cCCCCCcchhhcccccCcccCCcEEEEEehhhhccCCCCCcccCHHHHHHHHHHH
Confidence 99998875 3444 4443 5667654 22 245789999999999974 45689999999996799
Q ss_pred HHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccchhhhcccccCCCCch
Q psy9001 209 IVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSL 288 (1351)
Q Consensus 209 Lk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~ 288 (1351)
||+||||+ ||||||| |+ +..++ |||++++||
T Consensus 275 lk~LGv~~----i~L~Pi~--------------------e~--~~~~~-----~GY~~~~y~------------------ 305 (726)
T PRK05402 275 VKEMGFTH----VELLPIA--------------------EH--PFDGS-----WGYQPTGYY------------------ 305 (726)
T ss_pred HHHcCCCE----EEECCcc--------------------cC--CCCCC-----CCCCcccCC------------------
Confidence 99999999 9999954 44 44444 999999999
Q ss_pred hcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccC-
Q psy9001 289 IIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDG- 367 (1351)
Q Consensus 289 ~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~- 367 (1351)
+++ ++||+++|||+||++||++||+||||+|+||++.+ ..++..|++. +.|++.+
T Consensus 306 ---ai~-------------------~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~NH~~~~-~~~~~~~~~~-~~y~~~~~ 361 (726)
T PRK05402 306 ---APT-------------------SRFGTPDDFRYFVDACHQAGIGVILDWVPAHFPKD-AHGLARFDGT-ALYEHADP 361 (726)
T ss_pred ---CcC-------------------cccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC-ccchhccCCC-cceeccCC
Confidence 887 99999999999999999999999999999999886 3456777776 3444433
Q ss_pred CCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHH
Q psy9001 368 PRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLM 447 (1351)
Q Consensus 368 ~~~~~~~w~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~ 447 (1351)
..+.++.|++..||+++|+||++|+++++||++||||||||||++..|++.+++...+.+ ..+.++++.+.+++.||+
T Consensus 362 ~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~fl~ 439 (726)
T PRK05402 362 REGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFHIDGLRVDAVASMLYLDYSRKEGEW--IPNIYGGRENLEAIDFLR 439 (726)
T ss_pred cCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhCCcEEEECCHHHhhhcccccccccc--ccccccCcCCHHHHHHHH
Confidence 346678999999999999999999999999999999999999999999988877666543 234567778888999999
Q ss_pred HHHHHHHhhCCCeEEEEEcCCCCCCcccccccCCCCCCCcCC--cCCCC-------------------------------
Q psy9001 448 VANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLE--IRPDM------------------------------- 494 (1351)
Q Consensus 448 ~~~~~v~~~~P~~~~iaE~~~~~p~~~~~~~~gg~gfd~~~~--~~~d~------------------------------- 494 (1351)
++++.|++.+|++++|||+++.+|.++.+...+|+|||++|+ |+++.
T Consensus 440 ~~~~~~~~~~p~~~liaE~~~~~~~~~~~~~~~G~gfd~~wn~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 519 (726)
T PRK05402 440 ELNAVVHEEFPGALTIAEESTAWPGVTRPTEEGGLGFGYKWNMGWMHDTLDYMERDPIYRKYHHNELTFSLLYAYSENFV 519 (726)
T ss_pred HHHHHHHHHCCCeEEEEECCCCCcCccccccCCCCCCCceecCCcchHHHHHHhhCcccccccccchhHHHhHhhhcccc
Confidence 999999999999999999999999999999889999999987 54321
Q ss_pred -----------------------------------------------------------------C-------CCcHHHH
Q psy9001 495 -----------------------------------------------------------------S-------DMTVGTF 502 (1351)
Q Consensus 495 -----------------------------------------------------------------~-------~~sl~~f 502 (1351)
+ ...+.+|
T Consensus 520 l~~sHD~~~~g~~~l~~~~~g~~~~~~~~lrl~~~~~~t~pG~Plif~G~E~g~~~~~~~~~~l~W~~~~~~~~~~l~~~ 599 (726)
T PRK05402 520 LPLSHDEVVHGKGSLLGKMPGDDWQKFANLRAYYGYMWAHPGKKLLFMGGEFGQGREWNHDASLDWHLLDFPWHRGVQRL 599 (726)
T ss_pred CCCCCceeeeCcccHHhhCCCCHHHHHHHHHHHHHHHHHCCCcCEeeCchhcCCCCCCCccCcCCccccCCcchHHHHHH
Confidence 0 0124789
Q ss_pred HHHHHHhhhcccccccCC----cce--EeecCCCcEEEEEeC------ceEEEEeCCCCCcccccccccccCcccccccc
Q psy9001 503 DAAMNTTEERFKWLSADP----GYV--STKHEGDKVIIFERA------GLLFAFNFNGTQSFTDYRYCSTQSYSTHNTWT 570 (1351)
Q Consensus 503 ~k~L~~Lr~~~~~L~~g~----~~~--~~~~~~~~Vlaf~R~------~ll~v~Nf~~~~~~~~~~~~~~~~~~~~~~~~ 570 (1351)
+|+||+||+++|+|+.+. .+. ...+.+++|++|.|. .+|||+||++. .+.+|+
T Consensus 600 ~k~Li~Lr~~~~aL~~g~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~vlvv~N~~~~-~~~~y~-------------- 664 (726)
T PRK05402 600 VRDLNHLYRAEPALHELDFDPEGFEWIDADDAENSVLSFLRRGKDDGEPLLVVCNFTPV-PRHDYR-------------- 664 (726)
T ss_pred HHHHHHHHHhChhhhccccCcCCeeEEecccCCCCEEEEEEecCCCCCeEEEEEeCCCC-cccceE--------------
Confidence 999999999999998652 222 233446789999996 39999999987 666777
Q ss_pred cccccccceEeeeccCCceEEEccCCCCccCcccccCCCCceeeeecccCCcccEEEEEeCCcEEEEEEECC
Q psy9001 571 WRGSISKLHRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGLILTTSP 642 (1351)
Q Consensus 571 ~~~~~~~~~~v~v~~~g~~~~vlnsD~~~ygG~~~~~~~~~~~~~~~~~~g~~~si~l~LPpls~~vl~~~~ 642 (1351)
|++|.+|+|+++||||+..|||++.++.. .+.+++.+|+|++++|.|+|||++++||+++.
T Consensus 665 ----------i~~p~~g~~~~ilnsd~~~~gg~~~~~~~-~~~~~~~~~~g~~~~~~i~lp~~~~~v~~~~~ 725 (726)
T PRK05402 665 ----------LGVPQAGRWREVLNTDAEHYGGSNVGNGG-GVHAEEVPWHGRPHSLSLTLPPLATLILKPEA 725 (726)
T ss_pred ----------ECCCCCCeEEEEEcCcchhhCCCCCCCCC-ceeccccccCCCCCEEEEEeCCCEEEEEEEcC
Confidence 99999999999999999999999988765 57888889999999999999999999999853
No 8
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.9e-73 Score=683.65 Aligned_cols=458 Identities=29% Similarity=0.486 Sum_probs=392.8
Q ss_pred CceeEEE-----EEEEEEEeecCCCCccccceee-cCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeeccCCcc
Q psy9001 67 KAGLLCF-----MHVVCAAGDFNNWNREEFAYKK-LDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWA 140 (1351)
Q Consensus 67 ~~gv~F~-----A~~V~LvGDFN~Wd~~~~~M~k-~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPyA 140 (1351)
.+||+|+ |++|+|+||||+|+...++|+. .++|+|+++||++.+| ++|||+|.+.+|....++||||
T Consensus 35 ~~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~~~~G~we~~vp~~~~G-------~~Yky~l~~~~g~~~~~~DP~a 107 (628)
T COG0296 35 VSGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDRKESGIWELFVPGAPPG-------TRYKYELIDPSGQLRLKADPYA 107 (628)
T ss_pred CCceEEEEECCCCCeEEEEeecCCccceecccccCCCCceEEEeccCCCCC-------CeEEEEEeCCCCceeeccCchh
Confidence 4689999 9999999999999998899885 4789999999998776 5999999999998889999999
Q ss_pred eEEecCCC-CccceeeeeeCCCCCCCCccCCC----C--CCCCCCceEEEEecCCccCCCCCCCHHHHHHhhhHHHHHcC
Q psy9001 141 TYVTEPPV-VGHAYEQRIWNPKPQDKHKWTSS----K--PKKPDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQG 213 (1351)
Q Consensus 141 ~~~~~~~~-~~~~~~~~~~~p~~~~~~~w~~~----~--p~~~~~~vIYE~hvr~ft~~~~~G~~~gi~~~~L~yLk~LG 213 (1351)
++.+..+. +|+|.+ +. .|.|++. + .+..++++|||+||++|+++ ..-++.++++++|||||+||
T Consensus 108 ~~~~~~p~~aS~v~~-----~~---~y~W~d~~~~~~~~~~~~e~~vIYElHvGs~~~~-~~~~~~e~a~~llpYl~elG 178 (628)
T COG0296 108 RRQEVGPHTASQVVD-----LP---DYEWQDERWDRAWRGRFWEPIVIYELHVGSFTPD-RFLGYFELAIELLPYLKELG 178 (628)
T ss_pred hccCCCCCCcceecC-----CC---CcccccccccccccCCCCCCceEEEEEeeeccCC-CCcCHHHHHHHHhHHHHHhC
Confidence 99998886 455553 32 3566633 2 23568999999999999985 44344444555599999999
Q ss_pred CCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccchhhhcccccCCCCchhcccc
Q psy9001 214 MAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRA 293 (1351)
Q Consensus 214 vt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~ 293 (1351)
||| ||||| ++|+ |+.+| ||||++.|| ||
T Consensus 179 ~T~----IELMP--------------------v~e~--p~~~s-----WGYq~~g~y---------------------Ap 206 (628)
T COG0296 179 ITH----IELMP--------------------VAEH--PGDRS-----WGYQGTGYY---------------------AP 206 (628)
T ss_pred CCE----EEEcc--------------------cccC--CCCCC-----CCCCcceec---------------------cc
Confidence 999 99999 8999 99999 999999999 89
Q ss_pred cccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCC
Q psy9001 294 CEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHP 373 (1351)
Q Consensus 294 ~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~ 373 (1351)
+ ++||++++||+||++||++||.||||||+||++.+ .+++..|+|...+.+.+...+.++
T Consensus 207 ~-------------------sryGtPedfk~fVD~aH~~GIgViLD~V~~HF~~d-~~~L~~fdg~~~~e~~~~~~~~~~ 266 (628)
T COG0296 207 T-------------------SRYGTPEDFKALVDAAHQAGIGVILDWVPNHFPPD-GNYLARFDGTFLYEHEDPRRGEHT 266 (628)
T ss_pred c-------------------ccCCCHHHHHHHHHHHHHcCCEEEEEecCCcCCCC-cchhhhcCCccccccCCcccccCC
Confidence 8 89999999999999999999999999999999997 678899999865555555578899
Q ss_pred CCCCccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHH
Q psy9001 374 LWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFL 453 (1351)
Q Consensus 374 ~w~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v 453 (1351)
.|++..+|+++++||+||+++++||+++|||||+|+|+|.+|++.++.+..+-+ ..+..+++.+.++++|++++|+.|
T Consensus 267 ~Wg~~i~~~gr~EVR~Fll~nal~Wl~~yHiDGlRvDAV~smly~d~~~~~~~~--~~n~~ggr~n~~a~efl~~~n~~i 344 (628)
T COG0296 267 DWGTAIFNYGRNEVRNFLLANALYWLEEYHIDGLRVDAVASMLYLDYSRAEGEW--VPNEYGGRENLEAAEFLRNLNSLI 344 (628)
T ss_pred CcccchhccCcHHHHHHHHHHHHHHHHHhCCcceeeehhhhhhccchhhhhhcc--cccccCCcccHHHHHHhhhhhhhh
Confidence 999999999999999999999999999999999999999999998866544321 244568889999999999999999
Q ss_pred HhhCCCeEEEEEcCCCCCCcccccccCCCCCCCcCC--cCCCC-------------------------------------
Q psy9001 454 HDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLE--IRPDM------------------------------------- 494 (1351)
Q Consensus 454 ~~~~P~~~~iaE~~~~~p~~~~~~~~gg~gfd~~~~--~~~d~------------------------------------- 494 (1351)
+...|++++|||+|+.+|.++.++..||+||+|+|+ ||+|+
T Consensus 345 ~~~~pg~~~iaeestd~~~~t~~~~~gG~gf~yk~nmg~m~D~~~y~~~~~~~r~~~h~~~tf~~~y~~se~~~l~~sHD 424 (628)
T COG0296 345 HEEEPGAMTIAEESTDDPHVTLPVAIGGLGFGYKWNMGWMHDTLFYFGKDPVYRKYHHGELTFGLLYAFSENVVLPLSHD 424 (628)
T ss_pred cccCCCceeeeeeccCCCCceeeecccccchhhhhhhhhHhhHHHhcccCccccccccCCCccccccccceeEecccccc
Confidence 999999999999999999999999999999999999 89887
Q ss_pred ----CCC------------------------------------------------------------------cHHHHHH
Q psy9001 495 ----SDM------------------------------------------------------------------TVGTFDA 504 (1351)
Q Consensus 495 ----~~~------------------------------------------------------------------sl~~f~k 504 (1351)
+++ .+.+|.+
T Consensus 425 evvhGk~sl~~rm~g~~~~~~a~lr~~~a~~~~~Pgk~LLFMG~Efgq~~e~~~~~~~~w~~L~~~~~~g~~~~~~~~~~ 504 (628)
T COG0296 425 EVVHGKRSLGERMPGDAWQKFANLRALAAYMWLHPGKPLLFMGEEFGQGREWNFFSSLDWLLLDQAVREGRHKEFRRLVR 504 (628)
T ss_pred ceeecccchhccCCcchhhhHHHHHHHHHHHHhCCCceeeecchhhccCCCCcccCCCChhhhhhccccchHHHHHHHHH
Confidence 111 1266777
Q ss_pred HHHHhhhccccccc------CCcceEeecCCCcEEEEEeC-------ceEEEEeCCCCCcccccccccccCccccccccc
Q psy9001 505 AMNTTEERFKWLSA------DPGYVSTKHEGDKVIIFERA-------GLLFAFNFNGTQSFTDYRYCSTQSYSTHNTWTW 571 (1351)
Q Consensus 505 ~L~~Lr~~~~~L~~------g~~~~~~~~~~~~Vlaf~R~-------~ll~v~Nf~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (1351)
.|+++.+..+.|.. +..|+...+..++|++|.|. .+++|+||++. .+.+|+
T Consensus 505 ~ln~~y~~~~~l~~~~~~~~~~~W~~~~~~~~~v~af~R~l~~~~~~~lv~~~n~~~~-~~~~y~--------------- 568 (628)
T COG0296 505 DLNALYRIPDPLHEQDFQPEGFEWIDADDAENSVLAFYRRLLALRHEHLVVVNNFTPV-PRVDYR--------------- 568 (628)
T ss_pred hhHHhhccCCccchhhhcccCCceeecCchhhhHHHHHHHHhhcCCceEEEEeCCCCC-cccccc---------------
Confidence 78877777666643 33455555555689999994 48899999998 788888
Q ss_pred ccccccceEeeeccCCceEEEccCCCCccCcccccCCCCceeeeecccCCcccEEEEEeCCcEEEEEE
Q psy9001 572 RGSISKLHRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGLILT 639 (1351)
Q Consensus 572 ~~~~~~~~~v~v~~~g~~~~vlnsD~~~ygG~~~~~~~~~~~~~~~~~~g~~~si~l~LPpls~~vl~ 639 (1351)
+|+|.+|.|+++||||+..|||++..+....+.++...++++.++++++|||+++++|+
T Consensus 569 ---------~~~~~~g~~~~~lntd~~~~ggs~~~~~~~~~~~~~~~~~~~~~~~~~~lpp~~~~~l~ 627 (628)
T COG0296 569 ---------VGVPVAGRWREVLNTDLAEYGGSGAGNLGLPVSGEDILWHGREWSLSLTLPPLAALVLK 627 (628)
T ss_pred ---------cCCcccccEEEeccchHHHhcCCccccccceecceeeeccCcceeeEEecCCceeeEee
Confidence 99999999999999999999999998887548999999999999999999999999986
No 9
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=100.00 E-value=8.9e-72 Score=695.71 Aligned_cols=456 Identities=30% Similarity=0.529 Sum_probs=380.6
Q ss_pred ceeEEE-----EEEEEEEeecCCCCccccceeecC-CCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeeccCCcce
Q psy9001 68 AGLLCF-----MHVVCAAGDFNNWNREEFAYKKLD-FGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWAT 141 (1351)
Q Consensus 68 ~gv~F~-----A~~V~LvGDFN~Wd~~~~~M~k~~-~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPyA~ 141 (1351)
.||+|+ |++|+|+||||+|+...++|++.. .|+|+++||+...| ..|+|+|+..+|....+.||||+
T Consensus 28 ~g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~~~~Gvw~~~i~~~~~g-------~~Y~y~v~~~~g~~~~~~DPYA~ 100 (613)
T TIGR01515 28 SGTRFCVWAPNAREVRVAGDFNYWDGREHPMRRRNDNGIWELFIPGIGEG-------ELYKYEIVTNNGEIRLKADPYAF 100 (613)
T ss_pred CcEEEEEECCCCCEEEEEEecCCCCCceecceEecCCCEEEEEeCCCCCC-------CEEEEEEECCCCcEEEeCCCCEe
Confidence 689999 999999999999998889998864 89999999987655 69999999878887889999999
Q ss_pred EEecCCC-Cccceee--eeeCCCCCCCCccCCCCCC---CCCCceEEEEecCCccCCCCCCCHHHHHHhhhHHHHHcCCC
Q psy9001 142 YVTEPPV-VGHAYEQ--RIWNPKPQDKHKWTSSKPK---KPDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMA 215 (1351)
Q Consensus 142 ~~~~~~~-~~~~~~~--~~~~p~~~~~~~w~~~~p~---~~~~~vIYE~hvr~ft~~~~~G~~~gi~~~~L~yLk~LGvt 215 (1351)
.++.++. .|++++. ..|+|. .|+..+++ ..++++|||+|||+|+++ |+|+++++++|||||+||||
T Consensus 101 ~~~~~~~~~s~v~d~~~~~w~~~-----~w~~~~~~~~~~~~~~~iYe~hv~~~~~~---g~~~~i~~~l~dyl~~LGvt 172 (613)
T TIGR01515 101 YAEVRPNTASLVYDLEGYSWQDQ-----KWQEKRKAKTPYEKPVSIYELHLGSWRHG---LSYRELADQLIPYVKELGFT 172 (613)
T ss_pred eeccCCCCcEEEECCccCccCch-----hhhhcccccCcccCCceEEEEehhhccCC---CCHHHHHHHHHHHHHHcCCC
Confidence 9998775 5666642 234443 56655432 345799999999999865 99999999966999999999
Q ss_pred cCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccc
Q psy9001 216 IPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACE 295 (1351)
Q Consensus 216 ~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~ 295 (1351)
+ ||||||| ++ +.. .+|||++++|| +|+
T Consensus 173 ~----i~L~Pi~--------------------e~--~~~-----~~wGY~~~~y~---------------------~~~- 199 (613)
T TIGR01515 173 H----IELLPVA--------------------EH--PFD-----GSWGYQVTGYY---------------------APT- 199 (613)
T ss_pred E----EEECCcc--------------------cC--CCC-----CCCCCCcccCc---------------------ccc-
Confidence 9 9999955 33 332 34999999999 787
Q ss_pred cCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccC-CCCCCCC
Q psy9001 296 KFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDG-PRGTHPL 374 (1351)
Q Consensus 296 ~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~-~~~~~~~ 374 (1351)
++||+++|||+||++||++||+||||+|+||++.+. ..+..|++. +.|++.+ ..+.+..
T Consensus 200 ------------------~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~-~~~~~~~~~-~~y~~~~~~~~~~~~ 259 (613)
T TIGR01515 200 ------------------SRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKDD-HGLAEFDGT-PLYEHKDPRDGEHWD 259 (613)
T ss_pred ------------------cccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCcc-chhhccCCC-cceeccCCccCcCCC
Confidence 899999999999999999999999999999999863 345566665 3444433 3355678
Q ss_pred CCCccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHH
Q psy9001 375 WDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLH 454 (1351)
Q Consensus 375 w~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~ 454 (1351)
|++..||+++|+||++|+++++||++||||||||||++..|++.++++..+.+. .+.++++.+.++..||+++++.|+
T Consensus 260 w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~fl~~~~~~v~ 337 (613)
T TIGR01515 260 WGTLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAVASMLYLDYSRDEGEWS--PNEDGGRENLEAVDFLRKLNQTVY 337 (613)
T ss_pred CCCceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCHHHhhhhcccccccccc--ccccCCcCChHHHHHHHHHHHHHH
Confidence 998899999999999999999999999999999999999999888877665432 234566778899999999999999
Q ss_pred hhCCCeEEEEEcCCCCCCcccccccCCCCCCCcCC--cCC--------------------------------------CC
Q psy9001 455 DKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLE--IRP--------------------------------------DM 494 (1351)
Q Consensus 455 ~~~P~~~~iaE~~~~~p~~~~~~~~gg~gfd~~~~--~~~--------------------------------------d~ 494 (1351)
+.+|++++|||+++.+|.++.+...||+|||++|+ |++ |+
T Consensus 338 ~~~p~~~liaE~~~~~~~~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~sHD~ 417 (613)
T TIGR01515 338 EAFPGVVTIAEESTEWPGVTRPTDEGGLGFHYKWNMGWMHDTLDYMSTDPVERQYHHQLITFSMLYAFSENFVLPLSHDE 417 (613)
T ss_pred HHCCCeEEEEEeCCCCccccccccCCcCCcCeeeCchHHHHHHHHHhhChhhHhhccccccHHHHHHhhhccccCCCCCC
Confidence 99999999999999999999999999999999987 432 11
Q ss_pred ----------------------------------------------------------C-------CCcHHHHHHHHHHh
Q psy9001 495 ----------------------------------------------------------S-------DMTVGTFDAAMNTT 509 (1351)
Q Consensus 495 ----------------------------------------------------------~-------~~sl~~f~k~L~~L 509 (1351)
+ ...+.+|+|+||+|
T Consensus 418 ~~~g~~~i~~~~~g~~~~~~~~~r~~~~~~~t~pG~plif~G~E~g~~~~~~~~~~l~W~~~~~~~~~~l~~~~k~L~~L 497 (613)
T TIGR01515 418 VVHGKKSLLNKMPGDYWQKFANYRALLGYMWAHPGKKLLFMGSEFAQGSEWNDTEQLDWHLLSFPMHQGVSVFVRDLNRT 497 (613)
T ss_pred cccCcccHHHhCCCchHHHHHHHHHHHHHHHhCCCCCEEEcchhcCcCCCCCCCccCCCccccCcccHHHHHHHHHHHHH
Confidence 0 01237899999999
Q ss_pred hhcccccccCCc----c--eEeecCCCcEEEEEeC------ceEEEEeCCCCCcccccccccccCccccccccccccccc
Q psy9001 510 EERFKWLSADPG----Y--VSTKHEGDKVIIFERA------GLLFAFNFNGTQSFTDYRYCSTQSYSTHNTWTWRGSISK 577 (1351)
Q Consensus 510 r~~~~~L~~g~~----~--~~~~~~~~~Vlaf~R~------~ll~v~Nf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (1351)
|+++|+|+.+.. + +...+.+++|++|.|. .|+||+||++. .+.+|+
T Consensus 498 r~~~paL~~~~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~~~vv~N~~~~-~~~~Y~--------------------- 555 (613)
T TIGR01515 498 YQKSKALYEHDFDPQGFEWIDVDDDEQSVFSFIRRAKKHGEALVIICNFTPV-VRHQYR--------------------- 555 (613)
T ss_pred HhhCHHhhccCCCCCceEEEEcccCCCCEEEEEEecCCCCCeEEEEEeCCCC-CccceE---------------------
Confidence 999999975421 2 2233456789999996 49999999997 778888
Q ss_pred ceEeeeccCCceEEEccCCCCccCcccccCCCCceeeeecccCCcccEEEEEeCCcEEEEEE
Q psy9001 578 LHRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGLILT 639 (1351)
Q Consensus 578 ~~~v~v~~~g~~~~vlnsD~~~ygG~~~~~~~~~~~~~~~~~~g~~~si~l~LPpls~~vl~ 639 (1351)
|++|.+|+|++|||||+..|||+++.+.. ...+...+++|+++||.|+|||++++||+
T Consensus 556 ---i~~p~~g~~~~il~Sd~~~~gG~g~~~~~-~~~~~~~~~~g~~~~i~i~iP~~~~~~~~ 613 (613)
T TIGR01515 556 ---VGVPQPGQYREVLNSDSETYGGSGQGNKG-PLSAEEGALHGRPCSLTMTLPPLATSWLR 613 (613)
T ss_pred ---eCCCCCCeEEEEEeCChhhcCCCCcCCCC-ceeccccccCCCCCEEEEEeCCcEEEEeC
Confidence 99998999999999999999999998875 45777788999999999999999999985
No 10
>PRK12313 glycogen branching enzyme; Provisional
Probab=100.00 E-value=3.8e-71 Score=694.06 Aligned_cols=460 Identities=29% Similarity=0.540 Sum_probs=380.2
Q ss_pred eeEEE-----EEEEEEEeecCCCCccccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeeccCCcceEE
Q psy9001 69 GLLCF-----MHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATYV 143 (1351)
Q Consensus 69 gv~F~-----A~~V~LvGDFN~Wd~~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPyA~~~ 143 (1351)
||+|+ |++|+|+||||+|++..++|.+..+|+|+++||+...| ..|+|+|...+|....+.||||+.+
T Consensus 39 gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~~~Gvw~~~i~~~~~g-------~~Y~y~v~~~~g~~~~~~DPya~~~ 111 (633)
T PRK12313 39 GTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRRESGVWEGFIPGAKEG-------QLYKYHISRQDGYQVEKIDPFAFYF 111 (633)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCcccccccccCCCEEEEEeCCCCCC-------CEEEEEEECCCCeEEecCCCceEEE
Confidence 89999 99999999999999888999988899999999987655 6999999877888889999999999
Q ss_pred ecCCCCccceeeeeeCCCCCCCCccCCCC-----CC---CCCCceEEEEecCCccC--CCCCCCHHHHHHhhhHHHHHcC
Q psy9001 144 TEPPVVGHAYEQRIWNPKPQDKHKWTSSK-----PK---KPDNLKIYESHVGICTQ--EQKCASYEDFVRVVIPRIVKQG 213 (1351)
Q Consensus 144 ~~~~~~~~~~~~~~~~p~~~~~~~w~~~~-----p~---~~~~~vIYE~hvr~ft~--~~~~G~~~gi~~~~L~yLk~LG 213 (1351)
..++.. .+++++|+ .|.|++.. ++ ..++++|||+|||+|+. ++..|+|+++++++|||||+||
T Consensus 112 ~~~~~~----~s~v~d~~---~~~w~~~~~~~~~~~~~~~~~~~~iYe~hv~~f~~~~~~~~g~~~~~~~~ll~yl~~LG 184 (633)
T PRK12313 112 EARPGT----ASIVWDLP---EYKWKDGLWLARRKRWNALDRPISIYEVHLGSWKRNEDGRPLSYRELADELIPYVKEMG 184 (633)
T ss_pred ecCCCC----ceEECCCc---ccCCCChhhhhccccCCCCCCCceEEEEehhccccCCCCCccCHHHHHHHHHHHHHHcC
Confidence 886642 23344554 56776643 21 33789999999999975 3568999999999779999999
Q ss_pred CCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccchhhhcccccCCCCchhcccc
Q psy9001 214 MAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRA 293 (1351)
Q Consensus 214 vt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~ 293 (1351)
||+ ||||||| ++ |..++ |||++++|| ++
T Consensus 185 v~~----i~L~Pi~--------------------~~--~~~~~-----~GY~~~~y~---------------------~i 212 (633)
T PRK12313 185 YTH----VEFMPLM--------------------EH--PLDGS-----WGYQLTGYF---------------------AP 212 (633)
T ss_pred CCE----EEeCchh--------------------cC--CCCCC-----CCCCCcCcC---------------------cC
Confidence 999 9999955 33 44344 999999999 77
Q ss_pred cccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCC
Q psy9001 294 CEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHP 373 (1351)
Q Consensus 294 ~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~ 373 (1351)
+ ++||+++|||+||++||++||+||||+|+||++.++ +++..|++...++|.....+.+.
T Consensus 213 ~-------------------~~~Gt~~d~k~lv~~~H~~Gi~VilD~V~nH~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 272 (633)
T PRK12313 213 T-------------------SRYGTPEDFMYLVDALHQNGIGVILDWVPGHFPKDD-DGLAYFDGTPLYEYQDPRRAENP 272 (633)
T ss_pred C-------------------CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCc-ccccccCCCcceeecCCCCCcCC
Confidence 7 999999999999999999999999999999999873 45566777532223333345567
Q ss_pred CCCCccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHH
Q psy9001 374 LWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFL 453 (1351)
Q Consensus 374 ~w~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v 453 (1351)
.|++.+||+++|+||++|+++++||++||||||||||++..|++.+++....|. .+..++..+.++++||+++++.|
T Consensus 273 ~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~---~~~~~~~~~~~~~~fl~~~~~~v 349 (633)
T PRK12313 273 DWGALNFDLGKNEVRSFLISSALFWLDEYHLDGLRVDAVSNMLYLDYDEEGEWT---PNKYGGRENLEAIYFLQKLNEVV 349 (633)
T ss_pred CCCCcccCCCCHHHHHHHHHHHHHHHHHhCCcEEEEcChhhhhhcccccccCcC---CcccCCCCCcHHHHHHHHHHHHH
Confidence 899899999999999999999999999999999999999999877665221222 23446667788899999999999
Q ss_pred HhhCCCeEEEEEcCCCCCCcccccccCCCCCCCcCC--cCC--------------------------------------C
Q psy9001 454 HDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLE--IRP--------------------------------------D 493 (1351)
Q Consensus 454 ~~~~P~~~~iaE~~~~~p~~~~~~~~gg~gfd~~~~--~~~--------------------------------------d 493 (1351)
++.+|++++|||+++.+|.++.+...||+|||++|+ |++ |
T Consensus 350 ~~~~p~~~liaE~~~~~~~~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~sHD 429 (633)
T PRK12313 350 YLEHPDVLMIAEESTAWPKVTGPVEVGGLGFDYKWNMGWMNDTLRYFEEDPIYRKYHHNLLTFSFMYAFSENFVLPFSHD 429 (633)
T ss_pred HHHCCCeEEEEECCCCCccccccccCCCCCcCceeCcHHHHHHHHHhhhCccccccccccchHHHhhhhhcccccCCCCc
Confidence 999999999999999999999999999999999987 442 1
Q ss_pred C----------------------------------------------------------C-------CCcHHHHHHHHHH
Q psy9001 494 M----------------------------------------------------------S-------DMTVGTFDAAMNT 508 (1351)
Q Consensus 494 ~----------------------------------------------------------~-------~~sl~~f~k~L~~ 508 (1351)
. + .+.+.+|+|+||+
T Consensus 430 ~~~~g~~~~~~~~~g~~~~~~~~~r~~~~~~~t~pG~Plif~G~E~g~~~~~~~~~~l~W~~~~~~~~~~l~~~~r~Li~ 509 (633)
T PRK12313 430 EVVHGKKSLMHKMPGDRWQQFANLRLLYTYMITHPGKKLLFMGSEFGQFLEWKHDESLEWHLLEDPMNAGMQRFTSDLNQ 509 (633)
T ss_pred ccccCCccHHHhcCCCHHHHHHHHHHHHHHHHhCCCCcEeecccccccCccCCccCCCCccccCChhHHHHHHHHHHHHH
Confidence 1 0 0134789999999
Q ss_pred hhhcccccccCC----cceEe--ecCCCcEEEEEeCc------eEEEEeCCCCCcccccccccccCcccccccccccccc
Q psy9001 509 TEERFKWLSADP----GYVST--KHEGDKVIIFERAG------LLFAFNFNGTQSFTDYRYCSTQSYSTHNTWTWRGSIS 576 (1351)
Q Consensus 509 Lr~~~~~L~~g~----~~~~~--~~~~~~Vlaf~R~~------ll~v~Nf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (1351)
||+++|+|+.+. .+..+ .+.+++|++|.|.. +|||+||++. .+.+|+
T Consensus 510 LRr~~paL~~~d~~~~~~~~l~~~~~~~~vlaf~R~~~~~~~~llvv~N~s~~-~~~~y~-------------------- 568 (633)
T PRK12313 510 LYKDEPALWELDFSPDGFEWIDADDADQSVLSFIRKGKNKGDFLVVVFNFTPV-EREDYR-------------------- 568 (633)
T ss_pred HHHhChHhhcccCCCCCcEEEECcCCCCCEEEEEEeCCCCCceEEEEEeCCCC-ccccee--------------------
Confidence 999999998542 22222 33456799999974 9999999997 677777
Q ss_pred cceEeeeccCCceEEEccCCCCccCcccccCCCCceeeeecccCCcccEEEEEeCCcEEEEEEECCC
Q psy9001 577 KLHRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGLILTTSPG 643 (1351)
Q Consensus 577 ~~~~v~v~~~g~~~~vlnsD~~~ygG~~~~~~~~~~~~~~~~~~g~~~si~l~LPpls~~vl~~~~~ 643 (1351)
|++|.+|+|++|||||+..|||+++.+.. .+.+...+++|++++|.|+|||++++||+..+.
T Consensus 569 ----i~~p~~g~~~~ilnsd~~~ygG~~~~~~~-~~~~~~~~~~g~~~~~~i~ip~~s~~v~~~~~~ 630 (633)
T PRK12313 569 ----IGVPVAGIYEEILNTDSEEFGGSGKGNNG-TVKAQEGPWHGRPQSLTLTLPPLGALVLKPKRR 630 (633)
T ss_pred ----ECCCCCCeEEEEEcCCchhcCCCCcCCCC-ceeecccccCCCCCEEEEEeCCCEEEEEEEccc
Confidence 99999999999999999999999987664 467777889999999999999999999999764
No 11
>PLN03244 alpha-amylase; Provisional
Probab=100.00 E-value=2.3e-70 Score=661.79 Aligned_cols=416 Identities=38% Similarity=0.732 Sum_probs=375.4
Q ss_pred cceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeeccCCcceEEecCCCCccceeeeeeCCCCCCCCccCC
Q psy9001 91 FAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTS 170 (1351)
Q Consensus 91 ~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPyA~~~~~~~~~~~~~~~~~~~p~~~~~~~w~~ 170 (1351)
..|+|...|.|...+| +|+||++||+.+.+++|. +.++++||+++.+.+. +.+++++.|+|+..+.|.|++
T Consensus 322 ~~~~~~~~~w~~~~~~-------~i~H~s~~k~~~~~~~g~-~~RiPaw~~~~~~~~~-~~~~~~~~w~P~~~~~y~~k~ 392 (872)
T PLN03244 322 LESRKGRKAWLKKYIP-------AIPHGSKYRLYFNTPDGP-LERIPAWATYVLPDDD-GKQAFAIHWEPPPEAAHKWKN 392 (872)
T ss_pred HHhhcccCceeecccC-------CCCCCCeEEEEEEcCCCC-cccCCCCeeeEEecCC-CCceeeeEeCCCcccCCccCC
Confidence 3566777899999886 457899999999998888 8999999999999875 448899999998767899999
Q ss_pred CCCCCCCCceEEEEecCCccCCCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEcccccccccc
Q psy9001 171 SKPKKPDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKT 250 (1351)
Q Consensus 171 ~~p~~~~~~vIYE~hvr~ft~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~ 250 (1351)
.+|+.+..+.|||+|||..+++.+.|||++++++ |
T Consensus 393 ~~p~~p~~lrIYE~HvGms~~e~kv~ty~eF~~~---------v------------------------------------ 427 (872)
T PLN03244 393 MKPKVPESLRIYECHVGISGSEPKISSFEEFTEK---------V------------------------------------ 427 (872)
T ss_pred CCCCCCCCceEEEEEeeecCCCCCcccHHHHhhc---------c------------------------------------
Confidence 9998899999999999999999999999999876 2
Q ss_pred ccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHH
Q psy9001 251 VAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 330 (1351)
Q Consensus 251 ~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H 330 (1351)
++|| ||+ ++||+++|||+||++||
T Consensus 428 ----------------t~fF---------------------Aps-------------------sRYGTPeDLK~LVD~aH 451 (872)
T PLN03244 428 ----------------TNFF---------------------AAS-------------------SRYGTPDDFKRLVDEAH 451 (872)
T ss_pred ----------------Cccc---------------------ccC-------------------cccCCHHHHHHHHHHHH
Confidence 2456 777 99999999999999999
Q ss_pred HcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHcCCCccccc
Q psy9001 331 KAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 410 (1351)
Q Consensus 331 ~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D 410 (1351)
++||+||||||+||++.+...++..|+|....||+.++.+.++.|+++.||+++++|++||+++++||++||||||||||
T Consensus 452 ~~GI~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna~yWleEyhIDGFRfD 531 (872)
T PLN03244 452 GLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNLNWWITEYQIDGFQFH 531 (872)
T ss_pred HCCCEEEEEecCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHHHHHHHHhCcCcceee
Confidence 99999999999999999877788999998778888877788899999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCCcccccccCCCCCCCcCC-
Q psy9001 411 GVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLE- 489 (1351)
Q Consensus 411 ~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~~~~p~~~~~~~~gg~gfd~~~~- 489 (1351)
++++|+|.++|+ .+|..++..+++..+|.+++.||+.+|+.+++.+|++++|||+++++|.+|.|++.||+||||+|+
T Consensus 532 aVtSMLY~d~G~-~~f~g~~~~y~n~~~d~dAv~fL~laN~~ih~~~P~~itIAEDsS~~P~vt~Pv~~GGLGFDYKWnM 610 (872)
T PLN03244 532 SLASMIYTHNGF-ASFNGDLDDYCNQYVDKDALMYLILANEILHALHPKIITIAEDATYYPGLCEPTSQGGLGFDYYVNL 610 (872)
T ss_pred cchhheeecccc-ccccCCccccccccCCchHHHHHHHHHHHHHHhCCCeEEEEEcCCCCcCccccCCCCCCCccceecC
Confidence 999999999998 677777777777888999999999999999999999999999999999999999999999999999
Q ss_pred -cCCCC-------------------------------------------CCC----------------------------
Q psy9001 490 -IRPDM-------------------------------------------SDM---------------------------- 497 (1351)
Q Consensus 490 -~~~d~-------------------------------------------~~~---------------------------- 497 (1351)
||++. +++
T Consensus 611 gwmdd~lkylk~~pderw~~~~ItfsL~~nrr~~ek~~aYsESHDqaLvGdKTlaf~l~d~~~y~~~~~~~vv~Rg~aLh 690 (872)
T PLN03244 611 SAPDMWLDFLDNIPDHEWSMSKIVSTLIANKEYADKMLSYAENHNQSISGGRSFAEILFGAIDEDPLGGKELLDRGCSLH 690 (872)
T ss_pred cchHHHHHHHHhCCCcccCHHHHhhhhhcccCCcceEEEEecccceeccccchHHhhhcccccccccccchhhhhhhHHH
Confidence 66433 000
Q ss_pred --------------------------------------------------------cHHHHHHHHHHhhhcccccccCCc
Q psy9001 498 --------------------------------------------------------TVGTFDAAMNTTEERFKWLSADPG 521 (1351)
Q Consensus 498 --------------------------------------------------------sl~~f~k~L~~Lr~~~~~L~~g~~ 521 (1351)
.|.+|+|+||+|++++++|..+..
T Consensus 691 KMiRllt~~~~G~kkLnFMGNEFGhpe~~dfPr~gN~~s~~~arrdW~Lld~~~hk~L~~FdrdLn~Ly~~~~aL~~gf~ 770 (872)
T PLN03244 691 KMIRLITFTIGGHAYLNFMGNEFGHPERIEFPMPSNNFSFSLANRCWDLLENEVHHHLFSFDKDLMDLDENEGILSRGLP 770 (872)
T ss_pred HHHHHHHHHccCccceeecccccCCchheeccccCCCccccccccCccccCChhHHHHHHHHHHHHHHHhcCcccccCCc
Confidence 016699999999999999999988
Q ss_pred ceEeecCCCcEEEEEeCceEEEEeCCCCCcccccccccccCcccccccccccccccceEeeeccCCceEEEccCCCCccC
Q psy9001 522 YVSTKHEGDKVIIFERAGLLFAFNFNGTQSFTDYRYCSTQSYSTHNTWTWRGSISKLHRVGVEQAGKYKVVLDSDCSHFG 601 (1351)
Q Consensus 522 ~~~~~~~~~~Vlaf~R~~ll~v~Nf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g~~~~vlnsD~~~yg 601 (1351)
++...+++++||||.|..|||||||+|++++.+|+ ||||.+|+|++|||||+..||
T Consensus 771 wI~~~d~e~kVIAF~R~~LLfVfNF~P~~sy~dYr------------------------IGVp~~G~Y~eILNSD~~~FG 826 (872)
T PLN03244 771 NIHHVKDAAMVISFMRGPFLFIFNFHPSNSYEGYD------------------------VGVEEAGEYQIILNSDETKYG 826 (872)
T ss_pred EEeeecCCCCEEEEEecCEEEEEeCCCCCCccCCE------------------------ECCCCCCeEEEEEeCChhhhC
Confidence 89989999999999999999999999987899999 999999999999999999999
Q ss_pred cccccCCCCceee--eecccCCcccEEEEEeCCcEEEEEEECC
Q psy9001 602 GFNRLDPGTVYET--YPEPWNNRRNSIKLYLPTRTGLILTTSP 642 (1351)
Q Consensus 602 G~~~~~~~~~~~~--~~~~~~g~~~si~l~LPpls~~vl~~~~ 642 (1351)
|+++++.+. +.+ .+.+++|+++||.|+|||++++||+.++
T Consensus 827 G~g~~~~~~-~~t~~~~~~~~gr~~sl~l~LPprsavVlk~~~ 868 (872)
T PLN03244 827 GQGIIEEDH-YLQRSINKRIDGLRNCLEVFLPSRTAQVYKLSR 868 (872)
T ss_pred CCCccCCCc-eeecccccccCCCCceEEEEeCCCEEEEEEEee
Confidence 999998765 554 5667999999999999999999999864
No 12
>KOG0470|consensus
Probab=100.00 E-value=1e-68 Score=638.86 Aligned_cols=495 Identities=45% Similarity=0.752 Sum_probs=429.1
Q ss_pred cccccccCceeEEE-----EEEEEEEeecCCCCcccccee-ecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCcee
Q psy9001 60 YLVDECHKAGLLCF-----MHVVCAAGDFNNWNREEFAYK-KLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLL 133 (1351)
Q Consensus 60 ~l~~~~~~~gv~F~-----A~~V~LvGDFN~Wd~~~~~M~-k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~ 133 (1351)
++...+.+..|.|. |++|+++||||+|+.....|. +++.|+|++.+|....|.+.++|++.+++.+.++.|+..
T Consensus 105 ~g~h~~~d~~v~~~ewaP~a~~~s~~gd~n~W~~~~~~~~~k~~~g~w~i~l~~~~~~s~~v~H~s~~~~~~~~p~g~~~ 184 (757)
T KOG0470|consen 105 LGTHRTPDGRVDFTEWAPLAEAVSLIGDFNNWNPSSNELKPKDDLGVWEIDLPPKVNGSGAVPHGSVSKIHLSTPYGETC 184 (757)
T ss_pred cceeccCCCceeeeeecccccccccccccCCCCCcccccCcccccceeEEecCcccCCCccccccceeEEEeecCCccee
Confidence 34444444458898 999999999999999888887 788999999999888888899999999999999999999
Q ss_pred eccCCcceEEecCCCCccceeeeeeCCCCCCCCccCCCCCCCCC-CceEEEEecCCccC-CCC---CCCHHHHHHhhhHH
Q psy9001 134 DRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPD-NLKIYESHVGICTQ-EQK---CASYEDFVRVVIPR 208 (1351)
Q Consensus 134 ~~~DPyA~~~~~~~~~~~~~~~~~~~p~~~~~~~w~~~~p~~~~-~~vIYE~hvr~ft~-~~~---~G~~~gi~~~~L~y 208 (1351)
..+||||+.+...+. ...+.+..|+|.++..+.|...+|+.++ +++|||+|||.||. +.. +|.|+++++|+|||
T Consensus 185 ~~~~~~~~~~~~~~~-~~q~~~~~~~~~~e~~w~~~~~~p~~P~~sL~IYE~HVrgfS~~E~~v~~~~gY~~FteKvlph 263 (757)
T KOG0470|consen 185 KRIPAWATYVDQEGE-GPQYYGIYWDPSPEFDWGFKHSRPKIPESSLRIYELHVRGFSSHESKVNTRGGYLGFTEKVLPH 263 (757)
T ss_pred eccChHhhcccCCCc-ccceeeccCCCCCcccccccCCCCCCChhheEEEEEeeccccCCCCccccccchhhhhhhhhhH
Confidence 999999999988774 4556677888874344444556666565 99999999999973 222 44499999999999
Q ss_pred HHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccchhhhcccccCCCCch
Q psy9001 209 IVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSL 288 (1351)
Q Consensus 209 Lk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~ 288 (1351)
||+||+|| |||||||+ ++ +..+.|||++++||
T Consensus 264 lK~LG~Na----iqLmpi~E--------------------f~------~~~~s~GY~~~nFF------------------ 295 (757)
T KOG0470|consen 264 LKKLGYNA----IQLMPIFE--------------------FG------HYYASWGYQVTNFF------------------ 295 (757)
T ss_pred HHHhCccc----eEEeehhh--------------------hh------hhhhccCcceeEee------------------
Confidence 99999999 99999664 31 12234999999999
Q ss_pred hcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCC-CcCcccC
Q psy9001 289 IIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQ-ACFFHDG 367 (1351)
Q Consensus 289 ~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~-~~yy~~~ 367 (1351)
||.++|+|++ + .+++.|||.||++||..||.||||||+||++++...++..|+|++ ..||+.+
T Consensus 296 ---apssrYgt~~------------s-~~ri~efK~lVd~aHs~GI~VlLDVV~sHaa~n~~d~l~~fdGid~~~Yf~~~ 359 (757)
T KOG0470|consen 296 ---APSSRYGTPE------------S-PCRINEFKELVDKAHSLGIEVLLDVVHSHAAKNSKDGLNMFDGIDNSVYFHSG 359 (757)
T ss_pred ---cccccccCCC------------c-ccchHHHHHHHHHHhhCCcEEehhhhhhhcccCcCCcchhccCcCCceEEEeC
Confidence 9997887763 2 455789999999999999999999999999998788889999999 6899999
Q ss_pred CCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCc---cCchHHH
Q psy9001 368 PRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLN---VDTDALI 444 (1351)
Q Consensus 368 ~~~~~~~w~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~---~~~~~~~ 444 (1351)
+++.+..|+++.|||++|+|+++|+++|+||++||+|||||||.|++|+|.+++...+|.+++..+|+.. .+.+++.
T Consensus 360 ~r~~h~~~~~r~fn~~~~~V~rflL~nLr~WVtEY~vDGFRFD~~ssm~~~~~g~~~~f~gd~~~y~g~~g~~~d~~~l~ 439 (757)
T KOG0470|consen 360 PRGYHNSWCSRLFNYNHPVVLRFLLSNLRWWVTEYHVDGFRFDLVSSMLYTHHGNAAGFDGDYIEYFGTDGSFVDVDALV 439 (757)
T ss_pred CcccccccccccccCCCHHHHHHHHHHHHHHHHheeccceEEcchhhhhhhccccccccCCcchhhhccCCCcccccHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999887 8999999
Q ss_pred HHHHHHHHHHhhCCCeEEEEEcCCCCCCc-ccccccCCCCCC--CcCC------cC---CC---C---------------
Q psy9001 445 YLMVANKFLHDKYPEIITIAEDVSGMPAS-CRPVTEGGTGFD--YRLE------IR---PD---M--------------- 494 (1351)
Q Consensus 445 f~~~~~~~v~~~~P~~~~iaE~~~~~p~~-~~~~~~gg~gfd--~~~~------~~---~d---~--------------- 494 (1351)
+++.+++.++...|+++++||+.+++|.+ |.|..+|+.||| |+.+ |. .. .
T Consensus 440 ~lmlAnd~~l~~~~~~It~~~D~~gm~~~~~~P~~~g~~~~d~~yr~~~~~~~k~~~~Lk~~~~~~~~~gs~~~~ltN~R 519 (757)
T KOG0470|consen 440 YLMLANDPLLGGTPGLITDAEDVSGMPGLGCFPVWQGGAGFDGLYRLAVRLFDKWIQLLKGSSDAEWIMGSIDYTLTNRR 519 (757)
T ss_pred HHHhhcchhhhcCCcceEeeeccccCCCcCCccccccccccchhhhHHhhhHHHHHHHhccCchhheeccCcceeeeccc
Confidence 99999999999999999999999999999 999999999999 7765 21 11 0
Q ss_pred -----------------CC-C-----------------------------------------------------------
Q psy9001 495 -----------------SD-M----------------------------------------------------------- 497 (1351)
Q Consensus 495 -----------------~~-~----------------------------------------------------------- 497 (1351)
++ +
T Consensus 520 ~~e~~v~y~~~HDq~~v~d~~T~af~~l~d~~~~~~~~~g~p~~~~idR~r~~h~~~~lit~~lg~g~pl~fmGdEfGh~ 599 (757)
T KOG0470|consen 520 YPEKSVNYAESHDQALVGDLVTIAFKWLMDETSWNCGSEGTPGTSVIDRGRALHKMIRLITLGLGGGAPLNFMGDEFGHP 599 (757)
T ss_pred cccceeeeeeccCCccccceeeecchhhcchhhhcccccCCCcchHHHHHHHHHHHHHHHHHhccCccceeccccccCCc
Confidence 00 0
Q ss_pred ----------------------------------cHHHHHHHHHHhhhcccccccCCcceEeecCCCcEEEEEeCceEEE
Q psy9001 498 ----------------------------------TVGTFDAAMNTTEERFKWLSADPGYVSTKHEGDKVIIFERAGLLFA 543 (1351)
Q Consensus 498 ----------------------------------sl~~f~k~L~~Lr~~~~~L~~g~~~~~~~~~~~~Vlaf~R~~ll~v 543 (1351)
.+.+|.++|+.|...+.++..+-.+....++.+++++|+|..+++|
T Consensus 600 e~~d~~~~~nn~s~~~~r~~~f~~~~~~~~r~~~~l~~F~~~~~~L~~~~~~~~~~~~~~~~k~e~~~~i~fer~~~~~v 679 (757)
T KOG0470|consen 600 EWLDFPRYGNNFSYNYARRKRFDLADSDLLRYRRQLNSFDREMNLLEERNGFTTSELQYISLKHEADEVIVFERGPLLFV 679 (757)
T ss_pred cccCCCcccCCccccccCccccccccchhhhhhhhhhhhhhHHHHHHHhccccccccccccccchhhheeeeccCCeEEE
Confidence 0156777777777777788877777888889999999999999999
Q ss_pred EeCCCCCcccccccccccCcccccccccccccccceEeeeccCCceEEEccCCCCccCcccccCCCCceeeeecccCCcc
Q psy9001 544 FNFNGTQSFTDYRYCSTQSYSTHNTWTWRGSISKLHRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRR 623 (1351)
Q Consensus 544 ~Nf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g~~~~vlnsD~~~ygG~~~~~~~~~~~~~~~~~~g~~ 623 (1351)
|||+++.++.+|. ||+..+|+|+.||++|...|||+.+++......+....+.|++
T Consensus 680 fn~h~~~s~~d~~------------------------vg~n~~~~~~iVl~sd~p~~~~~~rl~dt~~~~p~d~~~~g~~ 735 (757)
T KOG0470|consen 680 FNFHDSNSYIDYR------------------------VGFNAPGKYTIVLNSDRPKGGGWNRLDDTALFFPYDFRSEGRP 735 (757)
T ss_pred EEecCCCCCceeE------------------------EEecCCCceEEEECCCCCCCCCccccccccccCccccccCCee
Confidence 9999998999988 9999999999999999999999999988767778888899999
Q ss_pred cEEEEEeCCcEEEEEEECCC
Q psy9001 624 NSIKLYLPTRTGLILTTSPG 643 (1351)
Q Consensus 624 ~si~l~LPpls~~vl~~~~~ 643 (1351)
.++.+++|.+.++||....+
T Consensus 736 ~~l~VY~~~~~a~vl~~~~~ 755 (757)
T KOG0470|consen 736 VSLQVYIPSRTATVLALLDT 755 (757)
T ss_pred eeEEEEeccCcceEeeeccc
Confidence 99999999999999987643
No 13
>KOG0470|consensus
Probab=100.00 E-value=5e-68 Score=633.04 Aligned_cols=481 Identities=38% Similarity=0.604 Sum_probs=394.6
Q ss_pred ccCCceeehhchhhhhccchhhHHHHhhhccccceeecCCcEEEEeecCCccEEEEEec-chhhhHHHhhcccccccccc
Q psy9001 666 LGDNGILLMMNYSSINSSIGGIEKFTTSYNKYGIHVQADNSVRCFEWAPSAQQLYLTGY-NAVQLMAIMEHAYYASFGYQ 744 (1351)
Q Consensus 666 ~~~~~~~~~~~~~~i~~~~~~~~~f~~~y~~~G~~~~~~~~~~~~~WaP~A~~v~l~~~-~~~~~~~~~~~~~~~~~~~~ 744 (1351)
+-++...++.-...|.+++++|+.|+.+|+.||.|.++|+.+.|++|||+|+.|.|+|| |+|..
T Consensus 74 ~~~~~~~~~~~~~f~~~~~~~l~~~~~~y~~~g~h~~~d~~v~~~ewaP~a~~~s~~gd~n~W~~--------------- 138 (757)
T KOG0470|consen 74 LRERYKQLDDGLEFIGKSEGGLSAFSRGYEPLGTHRTPDGRVDFTEWAPLAEAVSLIGDFNNWNP--------------- 138 (757)
T ss_pred chhhHHHHHHHhhhhhhccCChhhhhccccccceeccCCCceeeeeecccccccccccccCCCCC---------------
Confidence 33556667777788889999999999999999999999999999999999999999997 76411
Q ss_pred ccccccCCccccCCCCCCCCCCcccccccccccCCCCCCcccccc--ccccccEEeeecccccCCCCceeeecCCccccc
Q psy9001 745 VTSFFAASSRTMGNSQSVDPASIHIPELHKLLERDPYLNPYQYEM--KRRYGLMVNFLEQFEKHEDPASIHIPELHKLLE 822 (1351)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m--~~~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (1351)
...+| |.++|+| ++.++...++..
T Consensus 139 ----------------------------------------~~~~~~~k~~~g~w--------------~i~l~~~~~~s~ 164 (757)
T KOG0470|consen 139 ----------------------------------------SSNELKPKDDLGVW--------------EIDLPPKVNGSG 164 (757)
T ss_pred ----------------------------------------cccccCccccccee--------------EEecCcccCCCc
Confidence 11223 4469999 889998888888
Q ss_pred cCCCCCCeEEEEEecCCceeeEEEecCcceEEEecCCCCCeeeeeeeeCCCCCCCCccccCCCCCCC-CceEEEeecCCc
Q psy9001 823 RDPYLNPYQYEMKRRYGLMVNFLEQLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPE-NLKIYESHVGIC 901 (1351)
Q Consensus 823 ~~~~~~~y~~~~~~~~~~~~~~~~~~dPya~~v~~~~~~~~~~d~~~~~p~~~~~~~w~~~~p~~p~-d~iIYE~HV~~~ 901 (1351)
-+||++.+++.+.+.+| ++..++||||+.+.+.+ ....+.+..|+|++..+|+|++++|+.|+ +++|||+|||+|
T Consensus 165 ~v~H~s~~~~~~~~p~g---~~~~~~~~~~~~~~~~~-~~~q~~~~~~~~~~e~~w~~~~~~p~~P~~sL~IYE~HVrgf 240 (757)
T KOG0470|consen 165 AVPHGSVSKIHLSTPYG---ETCKRIPAWATYVDQEG-EGPQYYGIYWDPSPEFDWGFKHSRPKIPESSLRIYELHVRGF 240 (757)
T ss_pred cccccceeEEEeecCCc---ceeeccChHhhcccCCC-cccceeeccCCCCCcccccccCCCCCCChhheEEEEEeeccc
Confidence 89999999999999999 89999999999999987 47888999999998888888999998896 999999999888
Q ss_pred ccC-CCccc---ccccccccccceeccCCCcccccccccccccCCceEEEecCCCCCCCCcccccCccceecCCccceee
Q psy9001 902 TQE-QKCAS---YEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWNREEFAYKKLDFGKWEL 977 (1351)
Q Consensus 902 s~~-~~~gt---y~~f~~~~lp~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~~~~~~y~~~d~gy~~~ 977 (1351)
|.+ +++-+ |++|+++++||||+|| +|. +|||
T Consensus 241 S~~E~~v~~~~gY~~FteKvlphlK~LG-~Na---------------iqLm----------------------------- 275 (757)
T KOG0470|consen 241 SSHESKVNTRGGYLGFTEKVLPHLKKLG-YNA---------------IQLM----------------------------- 275 (757)
T ss_pred cCCCCccccccchhhhhhhhhhHHHHhC-ccc---------------eEEe-----------------------------
Confidence 865 45555 9999999999999999 353 2444
Q ss_pred ecCCCCCCCccccccCcceeeecccCC-CCCCCCCCcccccc-ccccccccCCCCCHH------HHHHHHHHHHHcCCEE
Q psy9001 978 VLPPNPDGSCKLTHLSQVKLVVRNQHG-HLLDRFGTPEQLKY-LVDECHKAGLFGTPE------QLKYLVDECHKAGLYV 1049 (1351)
Q Consensus 978 ~~pp~~~~~~~i~d~~~~~l~~~~~~G-~~~~~~~sp~~hgY-~~Dy~~idp~yGt~e------dfK~LV~~aH~~GI~V 1049 (1351)
+..+|| ++ ..+|| ++.||+..+||||++ |||.||++||.+||.|
T Consensus 276 ---------------------pi~Ef~~~~-------~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~V 327 (757)
T KOG0470|consen 276 ---------------------PIFEFGHYY-------ASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEV 327 (757)
T ss_pred ---------------------ehhhhhhhh-------hccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEE
Confidence 233332 11 35678 889999999999999 9999999999999999
Q ss_pred EEEeecccccCCccccCcCCCCCC-CccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccc
Q psy9001 1050 LLDVVHSHASKNVLDGLNEFDGTQ-ACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSM 1128 (1351)
Q Consensus 1050 ILDVV~NHts~~~~~~l~~~dg~~-~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m 1128 (1351)
|||||+||++++..++++.|||.+ .+||+.++++.+..||++.|||++|+|+++|+++|+||++||+|||||||+|++|
T Consensus 328 lLDVV~sHaa~n~~d~l~~fdGid~~~Yf~~~~r~~h~~~~~r~fn~~~~~V~rflL~nLr~WVtEY~vDGFRFD~~ssm 407 (757)
T KOG0470|consen 328 LLDVVHSHAAKNSKDGLNMFDGIDNSVYFHSGPRGYHNSWCSRLFNYNHPVVLRFLLSNLRWWVTEYHVDGFRFDLVSSM 407 (757)
T ss_pred ehhhhhhhcccCcCCcchhccCcCCceEEEeCCcccccccccccccCCCHHHHHHHHHHHHHHHHheeccceEEcchhhh
Confidence 999999999998889999999999 7899999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCcccccCCc---CChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCc-ccccccCCcccc--cccc
Q psy9001 1129 LYHNHGCGEGFSGHYDEYFGLN---VDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPAS-CRPVTEGGTGFD--YRLG 1202 (1351)
Q Consensus 1129 ~~~~~g~~~~~~~~~~~~~g~~---~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~-~~p~~~gg~GFd--y~~~ 1202 (1351)
+|.++|.+.+|.|++.+|||.. .+.+++.+++.+++.++...|.+|.+||+.+++|.+ |.|..+||.||| |+.+
T Consensus 408 ~~~~~g~~~~f~gd~~~y~g~~g~~~d~~~l~~lmlAnd~~l~~~~~~It~~~D~~gm~~~~~~P~~~g~~~~d~~yr~~ 487 (757)
T KOG0470|consen 408 LYTHHGNAAGFDGDYIEYFGTDGSFVDVDALVYLMLANDPLLGGTPGLITDAEDVSGMPGLGCFPVWQGGAGFDGLYRLA 487 (757)
T ss_pred hhhccccccccCCcchhhhccCCCcccccHHHHHHhhcchhhhcCCcceEeeeccccCCCcCCccccccccccchhhhHH
Confidence 9999999999999999999988 899999999999999999999999999999999999 999999998888 5544
Q ss_pred cccccccccccccccccCchhHhhhccCCCCCCCccccCCCcccccccCCcccc-cCccccccCCCCccceeeecccCCC
Q psy9001 1203 QYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNR-RNSIKLYLPTRTGIIDEVNLLNNVR 1281 (1351)
Q Consensus 1203 ~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r-~~s~~~y~p~~~~~~~~vnfv~nHD 1281 (1351)
...- +.....|+.. . .+.+ .++...++-+++.+--.+||+++||
T Consensus 488 ~~~~--------------~k~~~~Lk~~------------------~---~~~~~~gs~~~~ltN~R~~e~~v~y~~~HD 532 (757)
T KOG0470|consen 488 VRLF--------------DKWIQLLKGS------------------S---DAEWIMGSIDYTLTNRRYPEKSVNYAESHD 532 (757)
T ss_pred hhhH--------------HHHHHHhccC------------------c---hhheeccCcceeeeccccccceeeeeeccC
Confidence 4110 1112222110 0 0011 2223334455555555588888888
Q ss_pred CCcCCc------------------------ccccccCCHHHHHHHHHHHHccCCccEEEee-cccCCCCcc
Q psy9001 1282 EERNNE------------------------NNMKRYIQTESNMNGFGIQTLPTQSPLYLVA-KIEKPCSTR 1327 (1351)
Q Consensus 1282 ~~rn~~------------------------~r~~~~~~~~~~r~A~allltspGiP~If~g-~~~~~~~~~ 1327 (1351)
+....+ ......++..+.+.-+..+.+++|+||+||| |+.+|++..
T Consensus 533 q~~v~d~~T~af~~l~d~~~~~~~~~g~p~~~~idR~r~~h~~~~lit~~lg~g~pl~fmGdEfGh~e~~d 603 (757)
T KOG0470|consen 533 QALVGDLVTIAFKWLMDETSWNCGSEGTPGTSVIDRGRALHKMIRLITLGLGGGAPLNFMGDEFGHPEWLD 603 (757)
T ss_pred CccccceeeecchhhcchhhhcccccCCCcchHHHHHHHHHHHHHHHHHhccCccceeccccccCCccccC
Confidence 743211 0011111224566777778889999999999 999998753
No 14
>PLN03244 alpha-amylase; Provisional
Probab=100.00 E-value=8.1e-65 Score=613.66 Aligned_cols=376 Identities=34% Similarity=0.620 Sum_probs=304.8
Q ss_pred cccCCCCCCeEEEEEecCCceeeEEEecCcceEEEecCCCCCeeeeeeeeCCCCCCCCccccCCCCCCCCceEEEeecCC
Q psy9001 821 LERDPYLNPYQYEMKRRYGLMVNFLEQLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGI 900 (1351)
Q Consensus 821 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~dPya~~v~~~~~~~~~~d~~~~~p~~~~~~~w~~~~p~~p~d~iIYE~HV~~ 900 (1351)
.+.++|+++|++.|+..+| . .+||++||++|+++.. +.++++.+|+|++.++|.|++++|++|..++|||||||+
T Consensus 336 ~~~i~H~s~~k~~~~~~~g---~-~~RiPaw~~~~~~~~~-~~~~~~~~w~P~~~~~y~~k~~~p~~p~~lrIYE~HvGm 410 (872)
T PLN03244 336 IPAIPHGSKYRLYFNTPDG---P-LERIPAWATYVLPDDD-GKQAFAIHWEPPPEAAHKWKNMKPKVPESLRIYECHVGI 410 (872)
T ss_pred cCCCCCCCeEEEEEEcCCC---C-cccCCCCeeeEEecCC-CCceeeeEeCCCcccCCccCCCCCCCCCCceEEEEEeee
Confidence 4458999999999999888 5 8999999999999865 559999999999888999999999999999999999999
Q ss_pred cccCCCcccccccccccccceeccCCCcccccccccccccCCceEEEecCCCCCCCCcccccCccceecCCccceeeecC
Q psy9001 901 CTQEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWNREEFAYKKLDFGKWELVLP 980 (1351)
Q Consensus 901 ~s~~~~~gty~~f~~~~lp~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~~~~~~y~~~d~gy~~~~~p 980 (1351)
+|+++++|||++|++.+
T Consensus 411 s~~e~kv~ty~eF~~~v--------------------------------------------------------------- 427 (872)
T PLN03244 411 SGSEPKISSFEEFTEKV--------------------------------------------------------------- 427 (872)
T ss_pred cCCCCCcccHHHHhhcc---------------------------------------------------------------
Confidence 99999999999998531
Q ss_pred CCCCCCccccccCcceeeecccCCCCCCCCCCccccccccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccC
Q psy9001 981 PNPDGSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASK 1060 (1351)
Q Consensus 981 p~~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp~~hgY~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~ 1060 (1351)
++||+++++|||++|||+||++||++||+||||||+||++.
T Consensus 428 ---------------------------------------t~fFApssRYGTPeDLK~LVD~aH~~GI~VILDvV~NH~~~ 468 (872)
T PLN03244 428 ---------------------------------------TNFFAASSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAA 468 (872)
T ss_pred ---------------------------------------CcccccCcccCCHHHHHHHHHHHHHCCCEEEEEecCccCCC
Confidence 24688999999999999999999999999999999999999
Q ss_pred CccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCC
Q psy9001 1061 NVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFS 1140 (1351)
Q Consensus 1061 ~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~ 1140 (1351)
+...++..|+|++..||+.++++.++.|+++.+|+++++||+||+++++||++||||||||||++++|+|.++|+ .+|.
T Consensus 469 d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna~yWleEyhIDGFRfDaVtSMLY~d~G~-~~f~ 547 (872)
T PLN03244 469 DEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNLNWWITEYQIDGFQFHSLASMIYTHNGF-ASFN 547 (872)
T ss_pred ccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHHHHHHHHhCcCcceeecchhheeecccc-cccc
Confidence 887789999998888998888888999999999999999999999999999999999999999999999999998 7899
Q ss_pred CCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccC
Q psy9001 1141 GHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQA 1220 (1351)
Q Consensus 1141 ~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n 1220 (1351)
+.+..+++...|.+++.||+++|+.|++.+|++++|||+++++|.+|+|..+||+||||+|++-. .
T Consensus 548 g~~~~y~n~~~d~dAv~fL~laN~~ih~~~P~~itIAEDsS~~P~vt~Pv~~GGLGFDYKWnMgw--------------m 613 (872)
T PLN03244 548 GDLDDYCNQYVDKDALMYLILANEILHALHPKIITIAEDATYYPGLCEPTSQGGLGFDYYVNLSA--------------P 613 (872)
T ss_pred CCccccccccCCchHHHHHHHHHHHHHHhCCCeEEEEEcCCCCcCccccCCCCCCCccceecCcc--------------h
Confidence 99999999999999999999999999999999999999999999999999999999999999822 2
Q ss_pred chhHhhhccCCCCCC-CccccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCcccccccC-----
Q psy9001 1221 GKYKVVLDSDCSHFG-GFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYI----- 1294 (1351)
Q Consensus 1221 ~~~rd~l~~d~~~~~-gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~----- 1294 (1351)
+.+...++.+. ..+ .+..+ .+.. ..+++.....++|.+|||+.....+.++..+
T Consensus 614 dd~lkylk~~p-derw~~~~I----tfsL---------------~~nrr~~ek~~aYsESHDqaLvGdKTlaf~l~d~~~ 673 (872)
T PLN03244 614 DMWLDFLDNIP-DHEWSMSKI----VSTL---------------IANKEYADKMLSYAENHNQSISGGRSFAEILFGAID 673 (872)
T ss_pred HHHHHHHHhCC-CcccCHHHH----hhhh---------------hcccCCcceEEEEecccceeccccchHHhhhccccc
Confidence 33344443221 001 00000 0000 0122222223889999998433111111000
Q ss_pred ------------CHHHHHHHHHHHHccCCcc-EEEee-cccCCCCc--------cceeeccCCcce
Q psy9001 1295 ------------QTESNMNGFGIQTLPTQSP-LYLVA-KIEKPCST--------REVVKAPLPFGV 1338 (1351)
Q Consensus 1295 ------------~~~~~r~A~allltspGiP-~If~g-~~~~~~~~--------~~~~~~p~~~~~ 1338 (1351)
.....|++-+++++++|.| |+||| |+.++++- ...--+++.|+.
T Consensus 674 y~~~~~~~vv~Rg~aLhKMiRllt~~~~G~kkLnFMGNEFGhpe~~dfPr~gN~~s~~~arrdW~L 739 (872)
T PLN03244 674 EDPLGGKELLDRGCSLHKMIRLITFTIGGHAYLNFMGNEFGHPERIEFPMPSNNFSFSLANRCWDL 739 (872)
T ss_pred ccccccchhhhhhhHHHHHHHHHHHHccCccceeecccccCCchheeccccCCCccccccccCccc
Confidence 1113344556788899998 89999 88887742 112224677875
No 15
>PLN02960 alpha-amylase
Probab=100.00 E-value=1e-63 Score=616.33 Aligned_cols=439 Identities=36% Similarity=0.626 Sum_probs=327.7
Q ss_pred cccCCceeehhchhhhhccchhhHHHHhhhccccceeecCCcEEEEeecCCccEEEEEec-chhhhHHHhhccccccccc
Q psy9001 665 MLGDNGILLMMNYSSINSSIGGIEKFTTSYNKYGIHVQADNSVRCFEWAPSAQQLYLTGY-NAVQLMAIMEHAYYASFGY 743 (1351)
Q Consensus 665 ~~~~~~~~~~~~~~~i~~~~~~~~~f~~~y~~~G~~~~~~~~~~~~~WaP~A~~v~l~~~-~~~~~~~~~~~~~~~~~~~ 743 (1351)
.|-++...+..-...|.+.+++|+.|+.+|+++|+|.+++..+.|+||||+|..+.|+|+ |+|+-.... +.
T Consensus 88 ~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~~~~~~~~~~~~wap~a~~~~~~gdfn~w~~~~~~-----~~--- 159 (897)
T PLN02960 88 FLRERHKALKDLKWEIFKRHIDLKEFASGFELLGMHRHPEHRVDFMEWAPGARYCSLVGDFNNWSPTENR-----AR--- 159 (897)
T ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHhhHHHHhccccCcccCeEEEEEcCCceeEEEeecccCCCcccch-----hh---
Confidence 466778888888899999999999999999999999999867999999999999999997 998654310 00
Q ss_pred cccccccCCccccCCCCCCCCCCcccc-cccccccCCCCCCcccccccc-----ccc-------------cEE-------
Q psy9001 744 QVTSFFAASSRTMGNSQSVDPASIHIP-ELHKLLERDPYLNPYQYEMKR-----RYG-------------LMV------- 797 (1351)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~m~~-----~~G-------------~w~------- 797 (1351)
+|-|-.. +.-.| .|-+| -+.+..+.|++ .-+++.-.. +.| -|+
T Consensus 160 -~g~~~~~------~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (897)
T PLN02960 160 -EGYFGHD------DFGYW---FIILEDKLREGEEPDEL-YFQEYNYVDDYDKGDSGIDIEELFQKMNDEYWEPGEDRFI 228 (897)
T ss_pred -ccccccc------ccceE---EEEechhhhcCCCcchh-hhhhhccccccccCCCCCCHHHHHHHhhhhhcCCcchhhh
Confidence 0000000 00011 12221 14455566772 111111100 011 110
Q ss_pred --------------------eeecccc----------------cCCCCc---eeeecC----------------------
Q psy9001 798 --------------------NFLEQFE----------------KHEDPA---SIHIPE---------------------- 816 (1351)
Q Consensus 798 --------------------~~~~~~~----------------~~~~~~---~~~~~~---------------------- 816 (1351)
+++++.+ +++++. .+.+..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (897)
T PLN02960 229 KNRLEVPAKLYEQMFGPNGPQTLEELGDIPDAETRYKEWKKEHKDDDPSNLPPLDIIDTGQPYDIFNVVTDPVWREKFLE 308 (897)
T ss_pred hccchhHHHHHHHhhCCCCCcchhhhhccCccchhhhhhhhhccCCChhhCCCeeecCCCcccccceeccCHHHHHHHhc
Confidence 0000000 000000 000000
Q ss_pred -------------Cccc-----cccCCCCCCeEEEEEecCCceeeEEEecCcceEEEec--CCCCCeeeeeeeeCCCCCC
Q psy9001 817 -------------LHKL-----LERDPYLNPYQYEMKRRYGLMVNFLEQLSPWATYVTE--PPVVGHAYEQRIWNPKPQD 876 (1351)
Q Consensus 817 -------------~~~~-----~~~~~~~~~y~~~~~~~~~~~~~~~~~~dPya~~v~~--~~~~~~~~d~~~~~p~~~~ 876 (1351)
..+| +.-++||++|+|+|+..+| ..+++||||+++.. ++.++++++ |+|+..+
T Consensus 309 ~~~~~~~~~~~~k~~~gw~~~~ip~~~hG~~Yky~v~~~~g----~~~~vdpyA~~~qp~~~~~~~~~v~---~d~~~~~ 381 (897)
T PLN02960 309 KKPPLPYWEETRKGRKAWLKKYIPAIPHGSKYRVYFNTPDG----PLERVPAWATYVLPDPDGKQWYAIH---WEPPPEE 381 (897)
T ss_pred cCCCCcceeeeeecCCcEEEEEccCCCCCCEEEEEEEeCCC----ceEECCCcceeEeecCCCccceEEE---eCCCCCC
Confidence 0000 2235699999999998877 47899999999954 444344444 4555446
Q ss_pred CCccccCCCCCCCCceEEEeecCCcccCCCcccccccccccccceeccCCCcccccccccccccCCceEEEecCCCCCCC
Q psy9001 877 KHKWTSSKPKKPENLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGD 956 (1351)
Q Consensus 877 ~~~w~~~~p~~p~d~iIYE~HV~~~s~~~~~gty~~f~~~~lp~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~ 956 (1351)
+|+|++++|+.+++++|||+|||.++.+...|||.++++..||+||+|| +|. ++||
T Consensus 382 ~y~W~~~~p~~~~~~vIYElHvg~~~~e~~~gtf~~~~e~~LdYLk~LG-vt~---------------IeLm-------- 437 (897)
T PLN02960 382 AYKWKFERPKVPKSLRIYECHVGISGSEPKISSFKEFTQKVLPHVKKAG-YNA---------------IQLI-------- 437 (897)
T ss_pred CCCCCCCCCCCCCCcEEEEEecccccCCCCCCCHHHHHHHHHHHHHHcC-CCE---------------EEEC--------
Confidence 8999988877779999999999999988889999999988899999999 332 2333
Q ss_pred CcccccCccceecCCccceeeecCCCCCCCccccccCcceeeecccCCCCCCCCCCcccccc-ccccccccCCCCCHHHH
Q psy9001 957 FNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGTPEQL 1035 (1351)
Q Consensus 957 ~Y~~~~~~~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt~edf 1035 (1351)
+..++ ....++|| +++||+++++|||++||
T Consensus 438 ------------------------------------------Pv~e~-------~~~~swGY~~~~yfa~~~~yGtp~df 468 (897)
T PLN02960 438 ------------------------------------------GVQEH-------KDYSSVGYKVTNFFAVSSRFGTPDDF 468 (897)
T ss_pred ------------------------------------------CcccC-------CCCCCCCCCcccCCCcccccCCHHHH
Confidence 11111 11235789 89999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHh
Q psy9001 1036 KYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEY 1115 (1351)
Q Consensus 1036 K~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~yWl~ey 1115 (1351)
|+||++||++||+||||||+||++.++..++..|+|....||+.+..+.++.|++..|||++++||+||+++++||++||
T Consensus 469 k~LVd~aH~~GI~VILDvV~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~Ey 548 (897)
T PLN02960 469 KRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEY 548 (897)
T ss_pred HHHHHHHHHCCCEEEEEecccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998766788899987778887777888899988999999999999999999999999
Q ss_pred CCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCc
Q psy9001 1116 QFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGT 1195 (1351)
Q Consensus 1116 gVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~ 1195 (1351)
||||||||++.+|+|.++|. ..+.|.+..+++...|.+++.||+++|+.|++..|++++|||+.+++|.+++|..+||+
T Consensus 549 hIDGfR~DAV~sMlY~d~g~-~~~~G~~~~~~n~~~d~~Ai~fL~~lN~~v~~~~P~vilIAEdss~~P~vt~P~~~GGL 627 (897)
T PLN02960 549 RVDGFQFHSLGSMLYTHNGF-ASFTGDLDEYCNQYVDRDALIYLILANEMLHQLHPNIITIAEDATFYPGLCEPTSQGGL 627 (897)
T ss_pred CCCceeecccceeeeeccCc-cccCCcccccCCccCCchHHHHHHHHHHHHHhhCCCeEEEEECCCCCCCccccCCCCCC
Confidence 99999999999999999875 34555555566666789999999999999999999999999999999999999999999
Q ss_pred cccccccc
Q psy9001 1196 GFDYRLGQ 1203 (1351)
Q Consensus 1196 GFdy~~~~ 1203 (1351)
||||+|++
T Consensus 628 GFDYkwnm 635 (897)
T PLN02960 628 GFDYYVNL 635 (897)
T ss_pred CcccccCC
Confidence 99999988
No 16
>PRK14706 glycogen branching enzyme; Provisional
Probab=100.00 E-value=3.9e-60 Score=588.29 Aligned_cols=446 Identities=22% Similarity=0.390 Sum_probs=332.7
Q ss_pred HhhhccccceeecCC---cEEEEeecCCccEEEEEec-chhhhHHHhhccccccccccccccccCCccccCCCCCCCCCC
Q psy9001 691 TTSYNKYGIHVQADN---SVRCFEWAPSAQQLYLTGY-NAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPAS 766 (1351)
Q Consensus 691 ~~~y~~~G~~~~~~~---~~~~~~WaP~A~~v~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 766 (1351)
...|+.+|+|...++ +++||+|||.|++|+|+|+ |+|+.
T Consensus 21 ~~~~~~lGah~~~~~~~~Gv~FrvwAP~A~~V~Lvgdfn~w~~------------------------------------- 63 (639)
T PRK14706 21 VRPDHLLGAHPATEGGVEGVRFAVWAPGAQHVSVVGDFNDWNG------------------------------------- 63 (639)
T ss_pred cchhHhcCccCccCCCcccEEEEEECCCCCEEEEEEecCCccc-------------------------------------
Confidence 358999999987652 4999999999999999995 65311
Q ss_pred cccccccccccCCCCCCcccccccc-ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecCCceeeEE
Q psy9001 767 IHIPELHKLLERDPYLNPYQYEMKR-RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRYGLMVNFL 845 (1351)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~m~~-~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 845 (1351)
...+|++ +.|+| ++.|++...| ..|+|+|+..+| ++.
T Consensus 64 ------------------~~~pM~~~~~GvW--------------~~~vpg~~~g-------~~Yky~I~~~~g---~~~ 101 (639)
T PRK14706 64 ------------------FDHPMQRLDFGFW--------------GAFVPGARPG-------QRYKFRVTGAAG---QTV 101 (639)
T ss_pred ------------------ccccccccCCCEE--------------EEEECCCCCC-------CEEEEEEECCCC---CEE
Confidence 2246755 58999 8888876544 678999998777 678
Q ss_pred EecCcceEEEecCCCCCeeeeeeeeCCCCCCCCccccCC------CCCCCCceEEEeecCCcccCC--Cccccccccccc
Q psy9001 846 EQLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSK------PKKPENLKIYESHVGICTQEQ--KCASYEDFVRVV 917 (1351)
Q Consensus 846 ~~~dPya~~v~~~~~~~~~~d~~~~~p~~~~~~~w~~~~------p~~p~d~iIYE~HV~~~s~~~--~~gty~~f~~~~ 917 (1351)
+++||||+++..++..+.++.. + +|+|+.+. |+.+++++|||+|||+|+.++ ..++|+++++..
T Consensus 102 ~~~DPYa~~~~~~~~~~svv~~----~----~~~w~d~~w~~~~~~~~~~~~~IYE~Hvg~f~~~~~g~~~ty~~~~~~l 173 (639)
T PRK14706 102 DKMDPYGSFFEVRPNTASIIWE----D----RFEWTDTRWMSSRTAGFDQPISIYEVHVGSWARRDDGWFLNYRELAHRL 173 (639)
T ss_pred eccCcceEEEecCCCCceEECC----C----CCCCCCcccccccCCccCCCcEEEEEehhhcccCCCCCccCHHHHHHHH
Confidence 8999999999987665444332 1 25665443 223357999999999998753 357888888877
Q ss_pred ccceeccCCCcccccccccccccCCceEEEecCCCCCCCCcccccCccceecCCccceeeecCCCCCCCccccccCccee
Q psy9001 918 IPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKL 997 (1351)
Q Consensus 918 lp~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~~~~~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l 997 (1351)
+++||+|| +| .+|||
T Consensus 174 ~~ylk~lG-~t---------------~velm------------------------------------------------- 188 (639)
T PRK14706 174 GEYVTYMG-YT---------------HVELL------------------------------------------------- 188 (639)
T ss_pred HHHHHHcC-CC---------------EEEcc-------------------------------------------------
Confidence 78899888 33 23444
Q ss_pred eecccCCCCCCCCCCcccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCcc
Q psy9001 998 VVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACF 1076 (1351)
Q Consensus 998 ~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~y 1076 (1351)
+..++ ....++|| +++||+++++|||++|||+||++||++||+||||||+||++.+. .++..+||.+.++
T Consensus 189 -Pv~e~-------~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~-~~l~~~dg~~~y~ 259 (639)
T PRK14706 189 -GVMEH-------PFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDE-SGLAHFDGGPLYE 259 (639)
T ss_pred -chhcC-------CCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEecccccCcch-hhhhccCCCccee
Confidence 11111 00125788 88999999999999999999999999999999999999999875 6778888877655
Q ss_pred ccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHH
Q psy9001 1077 FHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDAL 1156 (1351)
Q Consensus 1077 f~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~ 1156 (1351)
|.....+.+.+|++..||+++++||++|+++++||++||||||||||++.+|+|.+++.+. ++++++|++.+.+++
T Consensus 260 ~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~----~~~~~~gg~~n~~a~ 335 (639)
T PRK14706 260 YADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFHVDGLRVDAVASMLYLDFSRTE----WVPNIHGGRENLEAI 335 (639)
T ss_pred ccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeehheeecccCccc----ccccccCCcccHHHH
Confidence 6555567788998888999999999999999999999999999999999999999888642 488999999999999
Q ss_pred HHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchhHhhhccCCCCCCC
Q psy9001 1157 IYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGG 1236 (1351)
Q Consensus 1157 ~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~g 1236 (1351)
.||+++|+.|++.+|++++|||+++++|.+++|+.. |+||||+|++...+ .....+..+ ..++.
T Consensus 336 ~fl~~ln~~v~~~~p~~~~iAE~~~~~~~v~~~~~~-G~gFD~~w~~~w~~--------------~~l~~~~~~-~~~r~ 399 (639)
T PRK14706 336 AFLKRLNEVTHHMAPGCMMIAEESTSFPGVTVPTPY-GLGFDYKWAMGWMN--------------DTLAYFEQD-PLWRK 399 (639)
T ss_pred HHHHHHHHHHHHhCCCeEEEEECCCCCcCcccccCC-CCccccEeccHHHH--------------HHHHHhccC-chhhh
Confidence 999999999999999999999999999999999875 99999999874332 011111111 00110
Q ss_pred ccccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCcccccccC------CHHHHHHHHHHHHccC
Q psy9001 1237 FNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYI------QTESNMNGFGIQTLPT 1310 (1351)
Q Consensus 1237 f~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~------~~~~~r~A~allltsp 1310 (1351)
+. + .. ......|..+.. ..++.|||+.+.....+...+ +.+++|++++++||.|
T Consensus 400 ~~-------~-------~~-lt~~~~y~~~e~-----~il~~SHDev~~~k~sl~~k~~g~~~~~~a~~r~~~~~~~t~P 459 (639)
T PRK14706 400 YH-------H-------HK-LTFFNVYRTSEN-----YVLAISHDEVVHLKKSMVMKMPGDWYTQRAQYRAFLAMMWTTP 459 (639)
T ss_pred hc-------h-------hc-cchhhhhhcccc-----EecCCCCccccCCccchHhHcCCCHHHHHHHHHHHHHHHHhCC
Confidence 00 0 00 000011211111 236799999876332222212 2367999999999999
Q ss_pred CccEEEee-cccCCCCccceeeccCCccee
Q psy9001 1311 QSPLYLVA-KIEKPCSTREVVKAPLPFGVR 1339 (1351)
Q Consensus 1311 GiP~If~g-~~~~~~~~~~~~~~p~~~~~~ 1339 (1351)
|+|||||| |+..-. .-....+|||...
T Consensus 460 G~pLiFmG~EfG~~~--ew~~~~~l~W~l~ 487 (639)
T PRK14706 460 GKKLLFMGQEFAQGT--EWNHDASLPWYLT 487 (639)
T ss_pred CCcEEEeccccCCCC--CCCcccCCCCccc
Confidence 99999999 666322 2347789999863
No 17
>PRK12568 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.1e-58 Score=573.20 Aligned_cols=453 Identities=22% Similarity=0.358 Sum_probs=333.2
Q ss_pred HHhhhccccceeec---CCcEEEEeecCCccEEEEEec-chhhhHHHhhccccccccccccccccCCccccCCCCCCCCC
Q psy9001 690 FTTSYNKYGIHVQA---DNSVRCFEWAPSAQQLYLTGY-NAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPA 765 (1351)
Q Consensus 690 f~~~y~~~G~~~~~---~~~~~~~~WaP~A~~v~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 765 (1351)
-.+.|+.+|+|... ..+|+|++|||+|++|+|+|+ |+|+
T Consensus 120 ~~~~y~~lGah~~~~~g~~Gv~FaVWAPnA~~VsVvGDFN~Wd------------------------------------- 162 (730)
T PRK12568 120 GQALRRALGAQHVQVGEVPGVRFAVWAPHAQRVAVVGDFNGWD------------------------------------- 162 (730)
T ss_pred hhhhHHhcCCeEeeECCCCcEEEEEECCCCCEEEEEEecCCCC-------------------------------------
Confidence 34689999999753 224999999999999999995 6531
Q ss_pred CcccccccccccCCCCCCcccccccc-ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecCCceeeE
Q psy9001 766 SIHIPELHKLLERDPYLNPYQYEMKR-RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRYGLMVNF 844 (1351)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~m~~-~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 844 (1351)
...++|++ +.|+| ++.||+...| ..|+|+|+..+| ++
T Consensus 163 ------------------g~~~pM~~~~~GVW--------------elfipg~~~G-------~~YKYeI~~~~G---~~ 200 (730)
T PRK12568 163 ------------------VRRHPMRQRIGGFW--------------ELFLPRVEAG-------ARYKYAITAADG---RV 200 (730)
T ss_pred ------------------ccceecccCCCCEE--------------EEEECCCCCC-------CEEEEEEEcCCC---eE
Confidence 12356754 68999 8888887666 667999998888 67
Q ss_pred EEecCcceEEEecCCCC-Ceeeeee--eeCCCCCCCCccccCCCC--CCCCceEEEeecCCcccCC--Cccccccccccc
Q psy9001 845 LEQLSPWATYVTEPPVV-GHAYEQR--IWNPKPQDKHKWTSSKPK--KPENLKIYESHVGICTQEQ--KCASYEDFVRVV 917 (1351)
Q Consensus 845 ~~~~dPya~~v~~~~~~-~~~~d~~--~~~p~~~~~~~w~~~~p~--~p~d~iIYE~HV~~~s~~~--~~gty~~f~~~~ 917 (1351)
..++||||+++..++.. ++|.+.. .|++ .+|...+++ .+++++|||+|||+|+.+. ..++|+++++..
T Consensus 201 ~~k~DPYA~~~e~~p~~asvV~~~~~~~W~d-----~~W~~~r~~~~~~~~~~IYEvHvgsf~~~~~~~~~~~~~la~~l 275 (730)
T PRK12568 201 LLKADPVARQTELPPATASVVPSAAAFAWTD-----AAWMARRDPAAVPAPLSIYEVHAASWRRDGHNQPLDWPTLAEQL 275 (730)
T ss_pred eecCCCcceEeecCCCCCeEEcCCCCCCCCC-----hhhhhcccccCCCCCcEEEEEEhHHhcCCCCCCCCCHHHHHHHH
Confidence 88999999999987754 4444331 1221 134443422 3489999999999999754 357899999888
Q ss_pred ccceeccCCCcccccccccccccCCceEEEecCCCCCCCCcccccCccceecCCccceeeecCCCCCCCccccccCccee
Q psy9001 918 IPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKL 997 (1351)
Q Consensus 918 lp~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~~~~~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l 997 (1351)
+|+||+|| |+. ++|+
T Consensus 276 l~ylk~LG-vt~---------------I~Lm------------------------------------------------- 290 (730)
T PRK12568 276 IPYVQQLG-FTH---------------IELL------------------------------------------------- 290 (730)
T ss_pred HHHHHHcC-CCE---------------EEEC-------------------------------------------------
Confidence 89999988 342 2333
Q ss_pred eecccCCCCCCCCCCcccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCcc
Q psy9001 998 VVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACF 1076 (1351)
Q Consensus 998 ~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~y 1076 (1351)
+..++ ....++|| +++||+++|+||+++|||+||++||++||+||||+|+||++.+. .++..|++...+.
T Consensus 291 -Pi~e~-------~~~~~wGY~~~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~d~-~~l~~fdg~~~Ye 361 (730)
T PRK12568 291 -PITEH-------PFGGSWGYQPLGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWVSAHFPDDA-HGLAQFDGAALYE 361 (730)
T ss_pred -ccccC-------CCCCCCCCCCCcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCccc-cccccCCCccccc
Confidence 11110 00135788 78999999999999999999999999999999999999999875 5677888764332
Q ss_pred ccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHH
Q psy9001 1077 FHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDAL 1156 (1351)
Q Consensus 1077 f~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~ 1156 (1351)
+.....+.+..|++..||+++|+||++|+++++||++||||||||||++.+|++.++++..|.| .++.+|++.+.+++
T Consensus 362 ~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w--~pn~~gg~en~ea~ 439 (730)
T PRK12568 362 HADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYHLDGLRVDAVASMLYRDYGRAEGEW--VPNAHGGRENLEAV 439 (730)
T ss_pred cCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhCceEEEEcCHhHhhhhccccccccc--cccccCCccChHHH
Confidence 2233346778898778999999999999999999999999999999999999999999888876 45678888899999
Q ss_pred HHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchhHhhhccCCCCCCC
Q psy9001 1157 IYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGG 1236 (1351)
Q Consensus 1157 ~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~g 1236 (1351)
.||+++|+.|++.+|++++|||+++.+|.++.|...||+|||++|++...+ ...+.+..| ..+|.
T Consensus 440 ~Fl~~ln~~v~~~~P~~~~IAEest~~p~vt~p~~~gGlGFd~kwn~gwm~--------------d~l~y~~~d-p~~r~ 504 (730)
T PRK12568 440 AFLRQLNREIASQFPGVLTIAEESTAWPGVTAPISDGGLGFTHKWNMGWMH--------------DTLHYMQRD-PAERA 504 (730)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEcCCCCccccccccCCCCCcCcEeCChhHH--------------HHHHHHhhC-chhhh
Confidence 999999999999999999999999999999999999999999999984443 112222211 11111
Q ss_pred ccccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCcccccccC------CHHHHHHHHHHHHccC
Q psy9001 1237 FNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYI------QTESNMNGFGIQTLPT 1310 (1351)
Q Consensus 1237 f~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~------~~~~~r~A~allltsp 1310 (1351)
+.. ........|.-+.. ..+..+||+......++.... +-+++|+.+++++|.|
T Consensus 505 ~~h---------------~~ltf~~~y~~~e~-----fvlp~SHDEvvhgk~sl~~kmpGd~~~k~a~lR~~~~~~~~~P 564 (730)
T PRK12568 505 HHH---------------SQLTFGLVYAFSER-----FVLPLSHDEVVHGTGGLLGQMPGDDWRRFANLRAYLALMWAHP 564 (730)
T ss_pred hhh---------------hhhhhhhhhhhhcc-----EeccCCCcccccCchhhhhcCCCCHHHHHHHHHHHHHHHHhCC
Confidence 100 00001112222222 346779998765323322211 1267899999999999
Q ss_pred CccEEEeecccCCCCccceeeccCCcce
Q psy9001 1311 QSPLYLVAKIEKPCSTREVVKAPLPFGV 1338 (1351)
Q Consensus 1311 GiP~If~g~~~~~~~~~~~~~~p~~~~~ 1338 (1351)
|.||||||+.=.+.. .--...+|+|..
T Consensus 565 GkkLlFmG~Efgq~~-ew~~~~~ldW~l 591 (730)
T PRK12568 565 GDKLLFMGAEFGQWA-DWNHDQSLDWHL 591 (730)
T ss_pred CcceeeCchhhCCcc-cccCCCCccccc
Confidence 999999994322221 223446889986
No 18
>PRK14705 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.9e-58 Score=594.46 Aligned_cols=448 Identities=24% Similarity=0.392 Sum_probs=334.1
Q ss_pred HHhhhccccceeecC-------CcEEEEeecCCccEEEEEec-chhhhHHHhhccccccccccccccccCCccccCCCCC
Q psy9001 690 FTTSYNKYGIHVQAD-------NSVRCFEWAPSAQQLYLTGY-NAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQS 761 (1351)
Q Consensus 690 f~~~y~~~G~~~~~~-------~~~~~~~WaP~A~~v~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (1351)
-.+.|+++|+|.... .+|+|++|||+|++|+|+|+ |+|..
T Consensus 616 ~~~~y~~lGah~~~~~~~~~~~~Gv~F~VWAP~A~~V~vvgdFN~w~~-------------------------------- 663 (1224)
T PRK14705 616 HEKLWDVLGAHVQHYKSSLGDVDGVSFAVWAPNAQAVRVKGDFNGWDG-------------------------------- 663 (1224)
T ss_pred hhhHHHhcCCeEeeccCccCCCCeEEEEEECCCCCEEEEEEEecCCCC--------------------------------
Confidence 345899999997532 25999999999999999994 66411
Q ss_pred CCCCCcccccccccccCCCCCCcccccccc--ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecCC
Q psy9001 762 VDPASIHIPELHKLLERDPYLNPYQYEMKR--RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRYG 839 (1351)
Q Consensus 762 ~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~--~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 839 (1351)
...+|++ +.|+| ++.||+...| ..|+|+|+..+|
T Consensus 664 -----------------------~~~~m~~~~~~GvW--------------~~fipg~~~G-------~~Yky~i~~~~g 699 (1224)
T PRK14705 664 -----------------------REHSMRSLGSSGVW--------------ELFIPGVVAG-------ACYKFEILTKAG 699 (1224)
T ss_pred -----------------------CcccceECCCCCEE--------------EEEECCCCCC-------CEEEEEEEcCCC
Confidence 2246754 47999 8888877666 567999998888
Q ss_pred ceeeEEEecCcceEEEecCCC-CCeeeeee-eeCCCCCCCCccccCCCC-C--CCCceEEEeecCCcccCCCcccccccc
Q psy9001 840 LMVNFLEQLSPWATYVTEPPV-VGHAYEQR-IWNPKPQDKHKWTSSKPK-K--PENLKIYESHVGICTQEQKCASYEDFV 914 (1351)
Q Consensus 840 ~~~~~~~~~dPya~~v~~~~~-~~~~~d~~-~~~p~~~~~~~w~~~~p~-~--p~d~iIYE~HV~~~s~~~~~gty~~f~ 914 (1351)
++.++.||||+++..++. .|+|+|.. .|++. +|...+.+ . .++++|||+|||.|+.. ++|+++.
T Consensus 700 ---~~~~k~DPyA~~~e~~p~~aS~V~d~~~~w~d~-----~W~~~r~~~~~~~~p~~IYEvHvgsf~~~---~~~~~l~ 768 (1224)
T PRK14705 700 ---QWVEKADPLAFGTEVPPLTASRVVEASYAFKDA-----EWMSARAERDPHNSPMSVYEVHLGSWRLG---LGYRELA 768 (1224)
T ss_pred ---cEEecCCccccccccCCCCCeEEeCCCCCcCCh-----hhhhccccCCCCcCCcEEEEEEecccccC---CchHHHH
Confidence 788999999999998764 57887763 24433 46554422 2 37899999999999873 7899998
Q ss_pred cccccceeccCCCcccccccccccccCCceEEEecCCCCCCCCcccccCccceecCCccceeeecCCCCCCCccccccCc
Q psy9001 915 RVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQ 994 (1351)
Q Consensus 915 ~~~lp~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~~~~~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~ 994 (1351)
+..+|+||+|| |+ .++||
T Consensus 769 ~~lldYlk~LG-vt---------------~IeLm---------------------------------------------- 786 (1224)
T PRK14705 769 KELVDYVKWLG-FT---------------HVEFM---------------------------------------------- 786 (1224)
T ss_pred HHHHHHHHHhC-CC---------------EEEEC----------------------------------------------
Confidence 87789999988 34 23333
Q ss_pred ceeeecccCCCCCCCCCCcccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCC
Q psy9001 995 VKLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQ 1073 (1351)
Q Consensus 995 ~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~ 1073 (1351)
+..++- ...++|| +++||+++++|||++|||+||++||++||+||||+|+||++.+. .++..|++..
T Consensus 787 ----Pv~e~p-------~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~-~~l~~fdg~~ 854 (1224)
T PRK14705 787 ----PVAEHP-------FGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDS-WALAQFDGQP 854 (1224)
T ss_pred ----ccccCC-------CCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcch-hhhhhcCCCc
Confidence 111110 0136889 89999999999999999999999999999999999999998875 5677888875
Q ss_pred CccccCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCC
Q psy9001 1074 ACFFHDG-PRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVD 1152 (1351)
Q Consensus 1074 ~~yf~~~-~~g~~~~w~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d 1152 (1351)
. |++.+ ..+.++.|++..||+++++||+||+++++||++||||||||||++.+|+|.++++..+.| .++.+|++.+
T Consensus 855 ~-y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w--~pn~~gg~en 931 (1224)
T PRK14705 855 L-YEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFHIDGLRVDAVASMLYLDYSREEGQW--RPNRFGGREN 931 (1224)
T ss_pred c-cccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCCcEEEeehhhhhhcccccccccc--cccccCCccC
Confidence 3 44443 357788999888999999999999999999999999999999999999999999888886 6789999999
Q ss_pred hhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchhHhhhccCCC
Q psy9001 1153 TDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCS 1232 (1351)
Q Consensus 1153 ~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~ 1232 (1351)
.+++.||+++|+.|++.+|++++|||+++.+|.+++|...||+||||+|++..|+..+. .+..| .
T Consensus 932 ~~ai~fl~~ln~~v~~~~p~~~~IAEest~~p~vt~p~~~GGlGFd~kWnmgwmhd~l~--------------Y~~~d-p 996 (1224)
T PRK14705 932 LEAISFLQEVNATVYKTHPGAVMIAEESTAFPGVTAPTSHGGLGFGLKWNMGWMHDSLK--------------YASED-P 996 (1224)
T ss_pred hHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCcCccccccCCCccCCcEecchhhHHHHH--------------HhhhC-c
Confidence 99999999999999999999999999999999999999999999999999966651111 11111 0
Q ss_pred CCCCccccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCccccc-ccC-----CHHHHHHHHHHH
Q psy9001 1233 HFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMK-RYI-----QTESNMNGFGIQ 1306 (1351)
Q Consensus 1233 ~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~-~~~-----~~~~~r~A~all 1306 (1351)
.++.+... .......|..+.. ..+..+||+.......+. ++. +...+|++++++
T Consensus 997 ~~r~~~~~---------------~ltf~~~ya~~e~-----fvl~~SHDevvhgk~sl~~km~Gd~~~k~a~lR~~~a~~ 1056 (1224)
T PRK14705 997 INRKWHHG---------------TITFSLVYAFTEN-----FLLPISHDEVVHGKGSMLRKMPGDRWQQLANLRAFLAYQ 1056 (1224)
T ss_pred chhhcccc---------------hHHHHHHHHhhcC-----EecccccccccccchhHHHhCCCcHHHHHHHHHHHHHHH
Confidence 01110000 0000112221211 223457997643211111 111 125689999999
Q ss_pred HccCCccEEEee-cccCCCCccceeeccCCcce
Q psy9001 1307 TLPTQSPLYLVA-KIEKPCSTREVVKAPLPFGV 1338 (1351)
Q Consensus 1307 ltspGiP~If~g-~~~~~~~~~~~~~~p~~~~~ 1338 (1351)
++.||+|||||| |+.....- --..+|.|..
T Consensus 1057 ~~~PGk~LlFMG~Efgq~~ew--~~~~~LdW~l 1087 (1224)
T PRK14705 1057 WAHPGKQLIFMGTEFGQEAEW--SEQHGLDWFL 1087 (1224)
T ss_pred HhcCCcCEEECccccCCCCCc--cccccCCCcc
Confidence 999999999999 45444221 2335678876
No 19
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=100.00 E-value=3e-58 Score=574.29 Aligned_cols=446 Identities=27% Similarity=0.457 Sum_probs=328.0
Q ss_pred hhhccccceeec-C--CcEEEEeecCCccEEEEEec-chhhhHHHhhccccccccccccccccCCccccCCCCCCCCCCc
Q psy9001 692 TSYNKYGIHVQA-D--NSVRCFEWAPSAQQLYLTGY-NAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPASI 767 (1351)
Q Consensus 692 ~~y~~~G~~~~~-~--~~~~~~~WaP~A~~v~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 767 (1351)
..|+.+|+|+.. + ++++||+|||.|++|.|+++ |+|+
T Consensus 12 ~~~~~LGah~~~~~~~~g~~FrvwAP~A~~V~L~~dfn~w~--------------------------------------- 52 (613)
T TIGR01515 12 RSYELLGSHYMELDGVSGTRFCVWAPNAREVRVAGDFNYWD--------------------------------------- 52 (613)
T ss_pred ChHHhcCceEeccCCcCcEEEEEECCCCCEEEEEEecCCCC---------------------------------------
Confidence 479999999986 1 35999999999999999994 5421
Q ss_pred ccccccccccCCCCCCcccccccc--ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecCCceeeEE
Q psy9001 768 HIPELHKLLERDPYLNPYQYEMKR--RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRYGLMVNFL 845 (1351)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~m~~--~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 845 (1351)
....+|.+ +.|+| ++.|++...| ..|+|+|+..+| ++.
T Consensus 53 ----------------~~~~~m~~~~~~Gvw--------------~~~i~~~~~g-------~~Y~y~v~~~~g---~~~ 92 (613)
T TIGR01515 53 ----------------GREHPMRRRNDNGIW--------------ELFIPGIGEG-------ELYKYEIVTNNG---EIR 92 (613)
T ss_pred ----------------CceecceEecCCCEE--------------EEEeCCCCCC-------CEEEEEEECCCC---cEE
Confidence 01245644 37999 8888876554 678999987777 577
Q ss_pred EecCcceEEEecCCC-CCeeeeee--eeCCCCCCCCccccCCCC-CC--CCceEEEeecCCcccCCCccccccccccccc
Q psy9001 846 EQLSPWATYVTEPPV-VGHAYEQR--IWNPKPQDKHKWTSSKPK-KP--ENLKIYESHVGICTQEQKCASYEDFVRVVIP 919 (1351)
Q Consensus 846 ~~~dPya~~v~~~~~-~~~~~d~~--~~~p~~~~~~~w~~~~p~-~p--~d~iIYE~HV~~~s~~~~~gty~~f~~~~lp 919 (1351)
+++||||+++..++. .++|+|.. .|+|. +|+..+++ .| .+++|||+|||+|+.+ |+|+++++..++
T Consensus 93 ~~~DPYA~~~~~~~~~~s~v~d~~~~~w~~~-----~w~~~~~~~~~~~~~~~iYe~hv~~~~~~---g~~~~i~~~l~d 164 (613)
T TIGR01515 93 LKADPYAFYAEVRPNTASLVYDLEGYSWQDQ-----KWQEKRKAKTPYEKPVSIYELHLGSWRHG---LSYRELADQLIP 164 (613)
T ss_pred EeCCCCEeeeccCCCCcEEEECCccCccCch-----hhhhcccccCcccCCceEEEEehhhccCC---CCHHHHHHHHHH
Confidence 899999999998764 57778753 35554 58776632 33 5799999999999865 999999988779
Q ss_pred ceeccCCCcccccccccccccCCceEEEecCCCCCCCCcccccCccceecCCccceeeecCCCCCCCccccccCcceeee
Q psy9001 920 RIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVV 999 (1351)
Q Consensus 920 ~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~~~~~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~ 999 (1351)
+||+|| +|. ++|+ +
T Consensus 165 yl~~LG-vt~---------------i~L~--------------------------------------------------P 178 (613)
T TIGR01515 165 YVKELG-FTH---------------IELL--------------------------------------------------P 178 (613)
T ss_pred HHHHcC-CCE---------------EEEC--------------------------------------------------C
Confidence 999988 332 2332 1
Q ss_pred cccCCCCCCCCCCcccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCcccc
Q psy9001 1000 RNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFH 1078 (1351)
Q Consensus 1000 ~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~ 1078 (1351)
..++ ....+||| ++|||+++|+|||++|||+||++||++||+||||||+||++.+. .++..+++.. .|++
T Consensus 179 i~e~-------~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~-~~~~~~~~~~-~y~~ 249 (613)
T TIGR01515 179 VAEH-------PFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKDD-HGLAEFDGTP-LYEH 249 (613)
T ss_pred cccC-------CCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCcc-chhhccCCCc-ceec
Confidence 1110 00136899 89999999999999999999999999999999999999999875 4566676654 3333
Q ss_pred CC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHH
Q psy9001 1079 DG-PRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALI 1157 (1351)
Q Consensus 1079 ~~-~~g~~~~w~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~ 1157 (1351)
.+ ..+..+.|+..+||+++|+||++|+++++||++||||||||||++.+|++.+++...+.|. .+.++...+.++..
T Consensus 250 ~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 327 (613)
T TIGR01515 250 KDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAVASMLYLDYSRDEGEWS--PNEDGGRENLEAVD 327 (613)
T ss_pred cCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCHHHhhhhcccccccccc--ccccCCcCChHHHH
Confidence 33 3455677888899999999999999999999999999999999999999998888777653 34566677889999
Q ss_pred HHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchhHhhhccCCCCCCCc
Q psy9001 1158 YLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGF 1237 (1351)
Q Consensus 1158 fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf 1237 (1351)
||+++++.|++.+|++++|||++++++.++.+...||+|||++|++.+|+..+.+... ...+ +.+
T Consensus 328 fl~~~~~~v~~~~p~~~liaE~~~~~~~~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~----~~~~-----------~~~ 392 (613)
T TIGR01515 328 FLRKLNQTVYEAFPGVVTIAEESTEWPGVTRPTDEGGLGFHYKWNMGWMHDTLDYMST----DPVE-----------RQY 392 (613)
T ss_pred HHHHHHHHHHHHCCCeEEEEEeCCCCccccccccCCcCCcCeeeCchHHHHHHHHHhh----Chhh-----------Hhh
Confidence 9999999999999999999999999999999999999999999997666522111100 0111 111
Q ss_pred cccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCcccccccCC------HHHHHHHHHHHHccCC
Q psy9001 1238 NRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYIQ------TESNMNGFGIQTLPTQ 1311 (1351)
Q Consensus 1238 ~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~~------~~~~r~A~allltspG 1311 (1351)
...... . + ..+.-... ..++.+||+......++...+. .+++|++++++||+||
T Consensus 393 ~~~~~~--~------------~-~~~~~~e~-----~~~~~sHD~~~~g~~~i~~~~~g~~~~~~~~~r~~~~~~~t~pG 452 (613)
T TIGR01515 393 HHQLIT--F------------S-MLYAFSEN-----FVLPLSHDEVVHGKKSLLNKMPGDYWQKFANYRALLGYMWAHPG 452 (613)
T ss_pred cccccc--H------------H-HHHHhhhc-----cccCCCCCCcccCcccHHHhCCCchHHHHHHHHHHHHHHHhCCC
Confidence 000000 0 0 00100011 2356789986543333322221 3688999999999999
Q ss_pred ccEEEee-cccCCCCccceeeccCCcce
Q psy9001 1312 SPLYLVA-KIEKPCSTREVVKAPLPFGV 1338 (1351)
Q Consensus 1312 iP~If~g-~~~~~~~~~~~~~~p~~~~~ 1338 (1351)
+|||||| |+...+.-. ...+|+|..
T Consensus 453 ~plif~G~E~g~~~~~~--~~~~l~W~~ 478 (613)
T TIGR01515 453 KKLLFMGSEFAQGSEWN--DTEQLDWHL 478 (613)
T ss_pred CCEEEcchhcCcCCCCC--CCccCCCcc
Confidence 9999999 555533322 346899974
No 20
>PRK05402 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.1e-57 Score=578.73 Aligned_cols=449 Identities=27% Similarity=0.463 Sum_probs=331.8
Q ss_pred HHhhhccccceeec---CCcEEEEeecCCccEEEEEec-chhhhHHHhhccccccccccccccccCCccccCCCCCCCCC
Q psy9001 690 FTTSYNKYGIHVQA---DNSVRCFEWAPSAQQLYLTGY-NAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPA 765 (1351)
Q Consensus 690 f~~~y~~~G~~~~~---~~~~~~~~WaP~A~~v~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 765 (1351)
....|+.+|+|... .++++||+|||.|++|+|+|+ |+|+
T Consensus 113 ~~~~~~~LGah~~~~~~~~gv~FrvwAP~A~~V~l~gdfn~w~------------------------------------- 155 (726)
T PRK05402 113 HLRLYETLGAHPVTVDGVSGVRFAVWAPNARRVSVVGDFNGWD------------------------------------- 155 (726)
T ss_pred cchhhhccccEEeccCCCCcEEEEEECCCCCEEEEEEEcCCCC-------------------------------------
Confidence 44589999999885 356999999999999999994 5431
Q ss_pred CcccccccccccCCCCCCcccccccc--ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecCCceee
Q psy9001 766 SIHIPELHKLLERDPYLNPYQYEMKR--RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRYGLMVN 843 (1351)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~m~~--~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 843 (1351)
+...+|++ +.|+| +++|++...| ..|+|++...+| +
T Consensus 156 ------------------~~~~~m~~~~~~Gvw--------------~~~i~~~~~g-------~~Y~y~v~~~~g---~ 193 (726)
T PRK05402 156 ------------------GRRHPMRLRGESGVW--------------ELFIPGLGEG-------ELYKFEILTADG---E 193 (726)
T ss_pred ------------------CccccceEcCCCCEE--------------EEEeCCCCCC-------CEEEEEEeCCCC---c
Confidence 11245754 47999 7888865444 678999987777 6
Q ss_pred EEEecCcceEEEecCCC-CCeeeeeeeeCCCCCCCCccccC-----CCC---CCCCceEEEeecCCcccC---CCccccc
Q psy9001 844 FLEQLSPWATYVTEPPV-VGHAYEQRIWNPKPQDKHKWTSS-----KPK---KPENLKIYESHVGICTQE---QKCASYE 911 (1351)
Q Consensus 844 ~~~~~dPya~~v~~~~~-~~~~~d~~~~~p~~~~~~~w~~~-----~p~---~p~d~iIYE~HV~~~s~~---~~~gty~ 911 (1351)
+.++.||||+++..++. .++|+|. ++|+|+.+ +++ .+++++|||+|||+|+.+ ...|+|+
T Consensus 194 ~~~~~DPYa~~~~~~~~~~s~v~d~--------~~~~w~~~~~~~~~~~~~~~~~~~~iYe~hv~~f~~~~~~~~~g~~~ 265 (726)
T PRK05402 194 LLLKADPYAFAAEVRPATASIVADL--------SQYQWNDAAWMEKRAKRNPLDAPISIYEVHLGSWRRHEDGGRFLSYR 265 (726)
T ss_pred EeecCCCceEEEecCCCCcEEEeCC--------ccCCCCCcchhhcccccCcccCCcEEEEEehhhhccCCCCCcccCHH
Confidence 78899999999998654 4566554 23555544 322 347899999999999965 3468899
Q ss_pred ccccccccceeccCCCcccccccccccccCCceEEEecCCCCCCCCcccccCccceecCCccceeeecCCCCCCCccccc
Q psy9001 912 DFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTH 991 (1351)
Q Consensus 912 ~f~~~~lp~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~~~~~~y~~~d~gy~~~~~pp~~~~~~~i~d 991 (1351)
++++..+|+||+|| +|. ++|+
T Consensus 266 ~i~~~l~~ylk~LG-v~~---------------i~L~------------------------------------------- 286 (726)
T PRK05402 266 ELADQLIPYVKEMG-FTH---------------VELL------------------------------------------- 286 (726)
T ss_pred HHHHHHHHHHHHcC-CCE---------------EEEC-------------------------------------------
Confidence 98888779999988 342 2332
Q ss_pred cCcceeeecccCCCCCCCCCCcccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCC
Q psy9001 992 LSQVKLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFD 1070 (1351)
Q Consensus 992 ~~~~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~d 1070 (1351)
+..++ ....+||| ++|||+|+|+|||++|||+||++||++||+||||+|+||++.++ .++..++
T Consensus 287 -------Pi~e~-------~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~NH~~~~~-~~~~~~~ 351 (726)
T PRK05402 287 -------PIAEH-------PFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDWVPAHFPKDA-HGLARFD 351 (726)
T ss_pred -------CcccC-------CCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCc-cchhccC
Confidence 11110 01136899 99999999999999999999999999999999999999999875 4577777
Q ss_pred CCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCc
Q psy9001 1071 GTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLN 1150 (1351)
Q Consensus 1071 g~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~ 1150 (1351)
+...+++.....+.++.|++.+||+++|+||++|+++++||++||||||||||++.+|++.+++..+++| .++.+++.
T Consensus 352 ~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~--~~~~~~~~ 429 (726)
T PRK05402 352 GTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFHIDGLRVDAVASMLYLDYSRKEGEW--IPNIYGGR 429 (726)
T ss_pred CCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhCCcEEEECCHHHhhhcccccccccc--ccccccCc
Confidence 7643333333346678898889999999999999999999999999999999999999998888877765 45677777
Q ss_pred CChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchhHhhhccC
Q psy9001 1151 VDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSD 1230 (1351)
Q Consensus 1151 ~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d 1230 (1351)
.+.+++.||+++++.|++.+|++++|||+++.++.++++...+|+||||+|++.+++. .++ .+..+
T Consensus 430 ~~~~~~~fl~~~~~~~~~~~p~~~liaE~~~~~~~~~~~~~~~G~gfd~~wn~~~~~~-------------~l~-~~~~~ 495 (726)
T PRK05402 430 ENLEAIDFLRELNAVVHEEFPGALTIAEESTAWPGVTRPTEEGGLGFGYKWNMGWMHD-------------TLD-YMERD 495 (726)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCcCccccccCCCCCCCceecCCcchH-------------HHH-HHhhC
Confidence 8889999999999999999999999999999999999998889999999998755431 111 11000
Q ss_pred CCCCCCccccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCcccccccCC------HHHHHHHHH
Q psy9001 1231 CSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYIQ------TESNMNGFG 1304 (1351)
Q Consensus 1231 ~~~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~~------~~~~r~A~a 1304 (1351)
..++.+.... ... + ..+.-... .+++.+||+.+....++...+. .+++|++++
T Consensus 496 -~~~~~~~~~~--~~~------------~-~~~~~~e~-----~~l~~sHD~~~~g~~~l~~~~~g~~~~~~~~lrl~~~ 554 (726)
T PRK05402 496 -PIYRKYHHNE--LTF------------S-LLYAYSEN-----FVLPLSHDEVVHGKGSLLGKMPGDDWQKFANLRAYYG 554 (726)
T ss_pred -cccccccccc--hhH------------H-HhHhhhcc-----ccCCCCCceeeeCcccHHhhCCCCHHHHHHHHHHHHH
Confidence 0001000000 000 0 00100011 3467899987543333332221 257899999
Q ss_pred HHHccCCccEEEee-cccCCCCccceeeccCCcce
Q psy9001 1305 IQTLPTQSPLYLVA-KIEKPCSTREVVKAPLPFGV 1338 (1351)
Q Consensus 1305 llltspGiP~If~g-~~~~~~~~~~~~~~p~~~~~ 1338 (1351)
++||+||+|||||| |+...+.... ++||+|..
T Consensus 555 ~~~t~pG~Plif~G~E~g~~~~~~~--~~~l~W~~ 587 (726)
T PRK05402 555 YMWAHPGKKLLFMGGEFGQGREWNH--DASLDWHL 587 (726)
T ss_pred HHHHCCCcCEeeCchhcCCCCCCCc--cCcCCccc
Confidence 99999999999999 7887776543 79999975
No 21
>PRK12313 glycogen branching enzyme; Provisional
Probab=100.00 E-value=4.9e-57 Score=566.76 Aligned_cols=444 Identities=24% Similarity=0.411 Sum_probs=323.2
Q ss_pred hhhccccceeecCC---cEEEEeecCCccEEEEEec-chhhhHHHhhccccccccccccccccCCccccCCCCCCCCCCc
Q psy9001 692 TSYNKYGIHVQADN---SVRCFEWAPSAQQLYLTGY-NAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPASI 767 (1351)
Q Consensus 692 ~~y~~~G~~~~~~~---~~~~~~WaP~A~~v~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 767 (1351)
..|+.+|+|++.++ +++||+|||.|++|+|+|+ |+|+
T Consensus 22 ~~~~~lGah~~~~~~~~gv~Frv~AP~A~~V~v~gdfn~w~--------------------------------------- 62 (633)
T PRK12313 22 RLYEYLGAHLEEVDGEKGTYFRVWAPNAQAVSVVGDFNDWR--------------------------------------- 62 (633)
T ss_pred cchhcCCcEEeccCCcccEEEEEECCCCCEEEEEEecCCCC---------------------------------------
Confidence 35999999998774 6999999999999999994 5531
Q ss_pred ccccccccccCCCCCCcccccccc-ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecCCceeeEEE
Q psy9001 768 HIPELHKLLERDPYLNPYQYEMKR-RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRYGLMVNFLE 846 (1351)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~m~~-~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 846 (1351)
+...+|.+ ..|+| ++++++...| ..|+|++...+| ++.+
T Consensus 63 ----------------~~~~~m~~~~~Gvw--------------~~~i~~~~~g-------~~Y~y~v~~~~g---~~~~ 102 (633)
T PRK12313 63 ----------------GNAHPLVRRESGVW--------------EGFIPGAKEG-------QLYKYHISRQDG---YQVE 102 (633)
T ss_pred ----------------cccccccccCCCEE--------------EEEeCCCCCC-------CEEEEEEECCCC---eEEe
Confidence 12245755 58999 7888865444 678999977777 6789
Q ss_pred ecCcceEEEecCC-CCCeeeeeeeeCCCCCCCCccccCC-----CC---CCCCceEEEeecCCcccC--CCccccccccc
Q psy9001 847 QLSPWATYVTEPP-VVGHAYEQRIWNPKPQDKHKWTSSK-----PK---KPENLKIYESHVGICTQE--QKCASYEDFVR 915 (1351)
Q Consensus 847 ~~dPya~~v~~~~-~~~~~~d~~~~~p~~~~~~~w~~~~-----p~---~p~d~iIYE~HV~~~s~~--~~~gty~~f~~ 915 (1351)
+.||||+++..+. ..++|+|.. +|.|+.+. ++ ...+++|||+|||.|+.+ ...|+|+++++
T Consensus 103 ~~DPya~~~~~~~~~~s~v~d~~--------~~~w~~~~~~~~~~~~~~~~~~~~iYe~hv~~f~~~~~~~~g~~~~~~~ 174 (633)
T PRK12313 103 KIDPFAFYFEARPGTASIVWDLP--------EYKWKDGLWLARRKRWNALDRPISIYEVHLGSWKRNEDGRPLSYRELAD 174 (633)
T ss_pred cCCCceEEEecCCCCceEECCCc--------ccCCCChhhhhccccCCCCCCCceEEEEehhccccCCCCCccCHHHHHH
Confidence 9999999998743 345665542 35565543 21 126899999999999975 34689999888
Q ss_pred ccccceeccCCCcccccccccccccCCceEEEecCCCCCCCCcccccCccceecCCccceeeecCCCCCCCccccccCcc
Q psy9001 916 VVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQV 995 (1351)
Q Consensus 916 ~~lp~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~~~~~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~ 995 (1351)
..||+||+|| +|. ||.+.|
T Consensus 175 ~ll~yl~~LG-v~~--------------i~L~Pi---------------------------------------------- 193 (633)
T PRK12313 175 ELIPYVKEMG-YTH--------------VEFMPL---------------------------------------------- 193 (633)
T ss_pred HHHHHHHHcC-CCE--------------EEeCch----------------------------------------------
Confidence 7789999988 342 122221
Q ss_pred eeeecccCCCCCCCCCCc--ccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCC
Q psy9001 996 KLVVRNQHGHLLDRFGTP--EQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGT 1072 (1351)
Q Consensus 996 ~l~~~~~~G~~~~~~~sp--~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~ 1072 (1351)
+.+| .+||| ++|||+|+|+|||++|||+||++||++||+||||+|+||++.++ .++..+++.
T Consensus 194 --------------~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~V~nH~~~~~-~~~~~~~~~ 258 (633)
T PRK12313 194 --------------MEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDWVPGHFPKDD-DGLAYFDGT 258 (633)
T ss_pred --------------hcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCc-ccccccCCC
Confidence 1111 36899 99999999999999999999999999999999999999999875 455667765
Q ss_pred CCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCC
Q psy9001 1073 QACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVD 1152 (1351)
Q Consensus 1073 ~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d 1152 (1351)
..+.|.....+.++.|++.+||++||+||++|+++++||++||||||||||++.+|++.+++ ..+.| .++.+|...+
T Consensus 259 ~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~iDG~R~D~~~~~~~~d~~-~~~~~--~~~~~~~~~~ 335 (633)
T PRK12313 259 PLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYHLDGLRVDAVSNMLYLDYD-EEGEW--TPNKYGGREN 335 (633)
T ss_pred cceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCcEEEEcChhhhhhcccc-cccCc--CCcccCCCCC
Confidence 44333333345667898889999999999999999999999999999999999999887766 44333 2345566667
Q ss_pred hhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchhHhhhccCCC
Q psy9001 1153 TDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCS 1232 (1351)
Q Consensus 1153 ~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~ 1232 (1351)
.+++.||+++++.|++.+|++++|||+++.++.++.+...+|+|||++|+..+++. ....+..+ .
T Consensus 336 ~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~~~~~~~~~gg~gfd~~w~~~~~~~--------------~~~~~~~~-~ 400 (633)
T PRK12313 336 LEAIYFLQKLNEVVYLEHPDVLMIAEESTAWPKVTGPVEVGGLGFDYKWNMGWMND--------------TLRYFEED-P 400 (633)
T ss_pred cHHHHHHHHHHHHHHHHCCCeEEEEECCCCCccccccccCCCCCcCceeCcHHHHH--------------HHHHhhhC-c
Confidence 78899999999999999999999999999999999999999999999998755431 11111100 0
Q ss_pred CCCCccccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCcccccccCC------HHHHHHHHHHH
Q psy9001 1233 HFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYIQ------TESNMNGFGIQ 1306 (1351)
Q Consensus 1233 ~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~~------~~~~r~A~all 1306 (1351)
.++.+. ... ..+ +.......+ .+++.+||+..+...++...+. ..++|++++++
T Consensus 401 ~~~~~~-------~~~--~~~-----~~~~~~~e~------~~l~~sHD~~~~g~~~~~~~~~g~~~~~~~~~r~~~~~~ 460 (633)
T PRK12313 401 IYRKYH-------HNL--LTF-----SFMYAFSEN------FVLPFSHDEVVHGKKSLMHKMPGDRWQQFANLRLLYTYM 460 (633)
T ss_pred cccccc-------ccc--chH-----HHhhhhhcc------cccCCCCcccccCCccHHHhcCCCHHHHHHHHHHHHHHH
Confidence 001000 000 000 000000111 3466899987553334333221 26789999999
Q ss_pred HccCCccEEEee-cccCCCCccceeeccCCcce
Q psy9001 1307 TLPTQSPLYLVA-KIEKPCSTREVVKAPLPFGV 1338 (1351)
Q Consensus 1307 ltspGiP~If~g-~~~~~~~~~~~~~~p~~~~~ 1338 (1351)
||+||+|||||| |+...+.-. ..+||+|..
T Consensus 461 ~t~pG~Plif~G~E~g~~~~~~--~~~~l~W~~ 491 (633)
T PRK12313 461 ITHPGKKLLFMGSEFGQFLEWK--HDESLEWHL 491 (633)
T ss_pred HhCCCCcEeecccccccCccCC--ccCCCCccc
Confidence 999999999999 666555433 348999975
No 22
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4e-56 Score=538.95 Aligned_cols=428 Identities=28% Similarity=0.403 Sum_probs=336.9
Q ss_pred hhhccccceeecCC--cEEEEeecCCccEEEEEec-chhhhHHHhhccccccccccccccccCCccccCCCCCCCCCCcc
Q psy9001 692 TSYNKYGIHVQADN--SVRCFEWAPSAQQLYLTGY-NAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPASIH 768 (1351)
Q Consensus 692 ~~y~~~G~~~~~~~--~~~~~~WaP~A~~v~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 768 (1351)
..|+++|+|..+.| .++|++|||.|+.|.|+|+ |+|..
T Consensus 21 ~~~~~~GA~~~~~g~~~~~F~vWAP~a~~V~vvgdfn~w~~--------------------------------------- 61 (628)
T COG0296 21 RLYEKLGAHPIENGVSGVRFRVWAPNARRVSLVGDFNDWDG--------------------------------------- 61 (628)
T ss_pred hhHhhhCcccccCCCCceEEEEECCCCCeEEEEeecCCccc---------------------------------------
Confidence 47899999988776 6999999999999999995 65411
Q ss_pred cccccccccCCCCCCccccccc--cccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecCCceeeEEE
Q psy9001 769 IPELHKLLERDPYLNPYQYEMK--RRYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRYGLMVNFLE 846 (1351)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~m~--~~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 846 (1351)
...+|+ +++|+| +++||+...| ..|||+|+..+| ....
T Consensus 62 ----------------~~~~~~~~~~~G~w--------------e~~vp~~~~G-------~~Yky~l~~~~g---~~~~ 101 (628)
T COG0296 62 ----------------RRMPMRDRKESGIW--------------ELFVPGAPPG-------TRYKYELIDPSG---QLRL 101 (628)
T ss_pred ----------------eecccccCCCCceE--------------EEeccCCCCC-------CeEEEEEeCCCC---ceee
Confidence 123342 368999 8888876665 678999999998 6789
Q ss_pred ecCcceEEEecCCC-CCeeeeeeeeCCCCCCCCccc----cCCCC-C-CCCceEEEeecCCcccCCCccccccccccccc
Q psy9001 847 QLSPWATYVTEPPV-VGHAYEQRIWNPKPQDKHKWT----SSKPK-K-PENLKIYESHVGICTQEQKCASYEDFVRVVIP 919 (1351)
Q Consensus 847 ~~dPya~~v~~~~~-~~~~~d~~~~~p~~~~~~~w~----~~~p~-~-p~d~iIYE~HV~~~s~~~~~gty~~f~~~~lp 919 (1351)
+.||||++...... .|.|.|. + +|.|+ +...+ + -++++|||+|||.|+.+ ..-+|.+++...||
T Consensus 102 ~~DP~a~~~~~~p~~aS~v~~~-----~---~y~W~d~~~~~~~~~~~~e~~vIYElHvGs~~~~-~~~~~~e~a~~llp 172 (628)
T COG0296 102 KADPYARRQEVGPHTASQVVDL-----P---DYEWQDERWDRAWRGRFWEPIVIYELHVGSFTPD-RFLGYFELAIELLP 172 (628)
T ss_pred ccCchhhccCCCCCCcceecCC-----C---CcccccccccccccCCCCCCceEEEEEeeeccCC-CCcCHHHHHHHHhH
Confidence 99999999876433 4666665 1 24555 33322 2 27999999999999985 55556777777889
Q ss_pred ceeccCCCcccccccccccccCCceEEEecCCCCCCCCcccccCccceecCCccceeeecCCCCCCCccccccCcceeee
Q psy9001 920 RIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVV 999 (1351)
Q Consensus 920 ~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~~~~~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~ 999 (1351)
+||+|| |+ .+|||- +.++.+
T Consensus 173 Yl~elG-~T---------------~IELMP------------v~e~p~-------------------------------- 192 (628)
T COG0296 173 YLKELG-IT---------------HIELMP------------VAEHPG-------------------------------- 192 (628)
T ss_pred HHHHhC-CC---------------EEEEcc------------cccCCC--------------------------------
Confidence 999888 33 456661 111111
Q ss_pred cccCCCCCCCCCCcccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCcccc
Q psy9001 1000 RNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFH 1078 (1351)
Q Consensus 1000 ~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~ 1078 (1351)
..++|| .+-||++.++|||++|||+||++||++||.||||+|+||++++. .++..||++..+.+.
T Consensus 193 -------------~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD~V~~HF~~d~-~~L~~fdg~~~~e~~ 258 (628)
T COG0296 193 -------------DRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILDWVPNHFPPDG-NYLARFDGTFLYEHE 258 (628)
T ss_pred -------------CCCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCEEEEEecCCcCCCCc-chhhhcCCccccccC
Confidence 124677 67789999999999999999999999999999999999999976 789999998776666
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHH
Q psy9001 1079 DGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIY 1158 (1351)
Q Consensus 1079 ~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~f 1158 (1351)
...++.++.|+...+|+++++||+||++++.||+++|||||||+|||.+|++.+..+..+.+ ..+.+|++.+.++++|
T Consensus 259 ~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal~Wl~~yHiDGlRvDAV~smly~d~~~~~~~~--~~n~~ggr~n~~a~ef 336 (628)
T COG0296 259 DPRRGEHTDWGTAIFNYGRNEVRNFLLANALYWLEEYHIDGLRVDAVASMLYLDYSRAEGEW--VPNEYGGRENLEAAEF 336 (628)
T ss_pred CcccccCCCcccchhccCcHHHHHHHHHHHHHHHHHhCCcceeeehhhhhhccchhhhhhcc--cccccCCcccHHHHHH
Confidence 66688899999988999999999999999999999999999999999999999877766653 5677888889999999
Q ss_pred HHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchhHhhhccC--CCCCCC
Q psy9001 1159 LMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSD--CSHFGG 1236 (1351)
Q Consensus 1159 l~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d--~~~~~g 1236 (1351)
++..|+.|+...|.+++|+|+|++++..+.+...+|+||+|+|++ +.+.|.+.-. .+.++.
T Consensus 337 l~~~n~~i~~~~pg~~~iaeestd~~~~t~~~~~gG~gf~yk~nm-----------------g~m~D~~~y~~~~~~~r~ 399 (628)
T COG0296 337 LRNLNSLIHEEEPGAMTIAEESTDDPHVTLPVAIGGLGFGYKWNM-----------------GWMHDTLFYFGKDPVYRK 399 (628)
T ss_pred hhhhhhhhcccCCCceeeeeeccCCCCceeeecccccchhhhhhh-----------------hhHhhHHHhcccCccccc
Confidence 999999999999999999999999999999999999999999988 2334333100 011111
Q ss_pred ccccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCC--cC--Ccccc--cccCCHHHHHHHHHHHHccC
Q psy9001 1237 FNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREE--RN--NENNM--KRYIQTESNMNGFGIQTLPT 1310 (1351)
Q Consensus 1237 f~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~--rn--~~~r~--~~~~~~~~~r~A~allltsp 1310 (1351)
+.. ++......|.++.. +.++.|||+. ++ .+.|+ ....+.+.+|+++++++++|
T Consensus 400 ~~h---------------~~~tf~~~y~~se~-----~~l~~sHDevvhGk~sl~~rm~g~~~~~~a~lr~~~a~~~~~P 459 (628)
T COG0296 400 YHH---------------GELTFGLLYAFSEN-----VVLPLSHDEVVHGKRSLGERMPGDAWQKFANLRALAAYMWLHP 459 (628)
T ss_pred ccc---------------CCCcccccccccee-----EeccccccceeecccchhccCCcchhhhHHHHHHHHHHHHhCC
Confidence 111 11112233556666 8899999998 55 56666 66677799999999999999
Q ss_pred CccEEEeecc
Q psy9001 1311 QSPLYLVAKI 1320 (1351)
Q Consensus 1311 GiP~If~g~~ 1320 (1351)
|+|||||||.
T Consensus 460 gk~LLFMG~E 469 (628)
T COG0296 460 GKPLLFMGEE 469 (628)
T ss_pred Cceeeecchh
Confidence 9999999953
No 23
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=100.00 E-value=9e-56 Score=552.31 Aligned_cols=458 Identities=18% Similarity=0.220 Sum_probs=307.2
Q ss_pred cccceeecCCcEEEEeecCCccEEEEEecchhhhHHHhhccccccccccccccccCCccccCCCCCCCCCCccccccccc
Q psy9001 696 KYGIHVQADNSVRCFEWAPSAQQLYLTGYNAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPASIHIPELHKL 775 (1351)
Q Consensus 696 ~~G~~~~~~~~~~~~~WaP~A~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 775 (1351)
.+|+++.+++ ++|++|||+|++|+|++|++|.
T Consensus 11 ~lG~~~~~~~-~~F~vwaP~a~~V~l~~~~~~~----------------------------------------------- 42 (605)
T TIGR02104 11 ELGAVYTPEK-TVFRVWAPTATEVELLLYKSGE----------------------------------------------- 42 (605)
T ss_pred CCccEEECCe-eEEEEECCCCCEEEEEEEcCCC-----------------------------------------------
Confidence 7999998777 9999999999999999964310
Q ss_pred ccCCCCCCcccccccc-ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecCCceeeEEEecCcceEE
Q psy9001 776 LERDPYLNPYQYEMKR-RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRYGLMVNFLEQLSPWATY 854 (1351)
Q Consensus 776 ~~~~~~~~~~~~~m~~-~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~dPya~~ 854 (1351)
...| ...++|.+ ..|+| ++.|++...| ..|+|+|+.. | .+..++||||++
T Consensus 43 -~~~~---~~~~~m~~~~~gvw--------------~~~i~~~~~g-------~~Y~y~v~~~-~---~~~~~~DPya~~ 93 (605)
T TIGR02104 43 -DGEP---YKVVKMKRGENGVW--------------SAVLEGDLHG-------YFYTYQVCIN-G---KWRETVDPYAKA 93 (605)
T ss_pred -CCcc---ceEEecccCCCCEE--------------EEEECCCCCC-------CEEEEEEEcC-C---CeEEEcCCCcce
Confidence 0001 12467855 58999 8888876555 6779999864 4 367899999999
Q ss_pred EecCCCCCeeeeeeeeCCCCCCCCccccCC-CC--CCCCceEEEeecCCcccCCC-----cccccccccccccceeccCC
Q psy9001 855 VTEPPVVGHAYEQRIWNPKPQDKHKWTSSK-PK--KPENLKIYESHVGICTQEQK-----CASYEDFVRVVIPRIVKQGD 926 (1351)
Q Consensus 855 v~~~~~~~~~~d~~~~~p~~~~~~~w~~~~-p~--~p~d~iIYE~HV~~~s~~~~-----~gty~~f~~~~lp~ik~lG~ 926 (1351)
++.++.+++|+|...++| ++|+.++ ++ .++++||||+|||+||.++. .|||.++++.-. ..
T Consensus 94 ~~~~~~~s~v~d~~~~~~-----~~w~~~~~~~~~~~~~~vIYElhv~~ft~~~~~~~~~~G~f~~~~e~~~------~~ 162 (605)
T TIGR02104 94 VTVNGKRGAVIDLERTNP-----EGWEKDHRPRLENPEDAIIYELHIRDFSIHENSGVKNKGKYLGLTETGT------KG 162 (605)
T ss_pred eccCCCcEEEEcccccCc-----cCcccccCCCCCChhHcEEEEEecchhccCCCCCcCCCCceeeeeccCc------cc
Confidence 999988899998865543 5788775 32 55899999999999997653 688888876410 01
Q ss_pred CcccccccccccccCCceEEEecCCCCCCCCcccccCccceecCCccceeeecCCCCCCCccccccCcceeeecccCCCC
Q psy9001 927 FNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHL 1006 (1351)
Q Consensus 927 fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~~~~~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~~G~~ 1006 (1351)
++++..++++|+++|++.++|+- .+.+ ... ....+
T Consensus 163 ~~g~~~~LdyL~~LGvt~I~L~P-------i~~~------------~~~------------------------~~~~~-- 197 (605)
T TIGR02104 163 PNGVSTGLDYLKELGVTHVQLLP-------VFDF------------AGV------------------------DEEDP-- 197 (605)
T ss_pred cccchhHHHHHHHcCCCEEEeCC-------cccc------------ccc------------------------ccccC--
Confidence 23455566777777776555551 1110 000 00000
Q ss_pred CCCCCCcccccc-ccccccccCCCCC--------HHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCC-cc
Q psy9001 1007 LDRFGTPEQLKY-LVDECHKAGLFGT--------PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQA-CF 1076 (1351)
Q Consensus 1007 ~~~~~sp~~hgY-~~Dy~~idp~yGt--------~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~-~y 1076 (1351)
....+||| .+|||+++++||+ ++|||+||++||++||+||||||+|||+..... .|++..+ +|
T Consensus 198 ----~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~~~~~~~---~f~~~~~~~~ 270 (605)
T TIGR02104 198 ----NNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVIMDVVYNHTYSREES---PFEKTVPGYY 270 (605)
T ss_pred ----CCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEEEEEEcCCccCCCCC---cccCCCCCee
Confidence 01124889 8899999988887 599999999999999999999999999864322 3444433 45
Q ss_pred ccCCCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChh
Q psy9001 1077 FHDGPRGTHPLW--DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTD 1154 (1351)
Q Consensus 1077 f~~~~~g~~~~w--~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~ 1154 (1351)
|+.+..+...++ +++++|+++|+||++|+++++||++||||||||||+|.++
T Consensus 271 ~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e~~iDGfR~D~~~~~-------------------------- 324 (605)
T TIGR02104 271 YRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVKEYNIDGFRFDLMGIH-------------------------- 324 (605)
T ss_pred EEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHHHcCCCEEEEechhcC--------------------------
Confidence 554555544433 5679999999999999999999999999999999999866
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchhHhhhccCC--C
Q psy9001 1155 ALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDC--S 1232 (1351)
Q Consensus 1155 ~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~--~ 1232 (1351)
...||+++++.|++..|++++|||.|...+.+........ . . .. .++ .++.||+.||+++.... .
T Consensus 325 ~~~~~~~~~~~~~~~~p~~~ligE~w~~~~~~~~~~~~~~---~----~-~~----~~~-~~~~~n~~~rd~i~~~~~~~ 391 (605)
T TIGR02104 325 DIETMNEIRKALNKIDPNILLYGEGWDLGTPLPPEQKATK---A----N-AY----QMP-GIAFFNDEFRDALKGSVFHL 391 (605)
T ss_pred CHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcchhhhhhh---h----c-cC----CCC-ceEEECCcchhhhcCCcccc
Confidence 3568899999999999999999999876543322100000 0 0 00 012 24679999999995321 0
Q ss_pred CCCCccccCCCcccccccCCcccc-cCccccc--cCCCCccceeeecccCCCCCcCCccccccc-------CCHHHHHHH
Q psy9001 1233 HFGGFNRLDPGTVYETYPEPWNNR-RNSIKLY--LPTRTGIIDEVNLLNNVREERNNENNMKRY-------IQTESNMNG 1302 (1351)
Q Consensus 1233 ~~~gf~r~~~~~~~~~~~~~~~~r-~~s~~~y--~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~-------~~~~~~r~A 1302 (1351)
.-++|.++......... .+ ..+...+ ......+...|||++|||+.+.. .++... .+.+++|+|
T Consensus 392 ~~~~f~~g~~~~~~~l~-----~~l~~~~~~~~~~~~~~~p~~~vnyl~~HD~~~l~-d~l~~~~~~~~~~~~~~r~rla 465 (605)
T TIGR02104 392 KKKGFVSGNPGTEETVK-----KGILGSIELDAVKPSALDPSQSINYVECHDNHTLW-DKLSLANPDETEEQLKKRQKLA 465 (605)
T ss_pred ccCceecCCCCcHHHHH-----hheeCChhhcccccccCChhheEEEEEecCCCCHH-HHHHhhCCCCCHHHHHHHHHHH
Confidence 11244443322111110 00 0111000 00111122239999999987642 122211 124678999
Q ss_pred HHHHHccCCccEEEee-cccCCCC------ccceeeccCCcce
Q psy9001 1303 FGIQTLPTQSPLYLVA-KIEKPCS------TREVVKAPLPFGV 1338 (1351)
Q Consensus 1303 ~allltspGiP~If~g-~~~~~~~------~~~~~~~p~~~~~ 1338 (1351)
++++||+||||||||| |+..... .....+++|+|.-
T Consensus 466 ~alllts~GiP~iy~GdE~g~s~~g~~n~y~~~d~~~~ldW~~ 508 (605)
T TIGR02104 466 TAILLLSQGIPFLHAGQEFMRTKQGDENSYNSPDSINQLDWDR 508 (605)
T ss_pred HHHHHHcCCCceeecchhhhccCCCCCCCccCCCcccccCccc
Confidence 9999999999999999 6655431 1235688999973
No 24
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=100.00 E-value=1.8e-55 Score=555.23 Aligned_cols=490 Identities=17% Similarity=0.181 Sum_probs=306.3
Q ss_pred cchhhHHHHhhhc-c---ccceeecCCcEEEEeecCCccEEEEEecchhhhHHHhhccccccccccccccccCCccccCC
Q psy9001 683 SIGGIEKFTTSYN-K---YGIHVQADNSVRCFEWAPSAQQLYLTGYNAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGN 758 (1351)
Q Consensus 683 ~~~~~~~f~~~y~-~---~G~~~~~~~~~~~~~WaP~A~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (1351)
.-|-|++.. .|. . +|+++++++ ++|++|||+|++|.|++|.+ .
T Consensus 111 ~~~~lD~~y-~y~~~~~~LGa~~~~~g-v~FrVWAPtA~~V~L~Ly~~-------------------------~------ 157 (898)
T TIGR02103 111 TAGVLDALY-AYAGPALSLGATLTDSG-VTFRLWAPTAQQVKLHIYSA-------------------------S------ 157 (898)
T ss_pred cchhhhHHh-hcCCCCCCCCcEEeCCc-EEEEEECCCCCEEEEEEEcC-------------------------C------
Confidence 345565543 232 3 999998765 99999999999999999532 0
Q ss_pred CCCCCCCCcccccccccccCCCCCCcccccccc--ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEe
Q psy9001 759 SQSVDPASIHIPELHKLLERDPYLNPYQYEMKR--RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKR 836 (1351)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~--~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 836 (1351)
.+ ....++|++ ..|+| +++++++.+| ..|+|+|+.
T Consensus 158 -------------------~~---~~~~~~M~~~~~~GVW--------------sv~v~g~~~G-------~~Y~Y~V~v 194 (898)
T TIGR02103 158 -------------------KK---VETTLPMTRDSTSGVW--------------SAEGGSSWKG-------AYYRYEVTV 194 (898)
T ss_pred -------------------CC---ccceEeCccCCCCCEE--------------EEEECcCCCC-------CEeEEEEEE
Confidence 00 113467855 48999 8999888777 456888874
Q ss_pred cC---CceeeEEEecCcceEEEecCCCCCeeeeeee--eCCCCCCCCccccCC---CC--CCCCceEEEeecCCcccC--
Q psy9001 837 RY---GLMVNFLEQLSPWATYVTEPPVVGHAYEQRI--WNPKPQDKHKWTSSK---PK--KPENLKIYESHVGICTQE-- 904 (1351)
Q Consensus 837 ~~---~~~~~~~~~~dPya~~v~~~~~~~~~~d~~~--~~p~~~~~~~w~~~~---p~--~p~d~iIYE~HV~~~s~~-- 904 (1351)
.. | .+++.+++||||++++.|+.+|+|+|... |.| .+|+..+ |+ .+++++|||+|||+||.+
T Consensus 195 ~~p~~G-~v~~~~v~DPYA~als~n~~~S~VvDl~~~~~~p-----~~W~~~~~p~p~~~~~~d~iIYElHVRDFS~~d~ 268 (898)
T TIGR02103 195 YHPSTG-KVETYLVTDPYSVSLSANSEYSQVVDLNDPALKP-----EGWDALAMPKPQLASFADMVLYELHIRDFSANDE 268 (898)
T ss_pred ecCCCC-eECCeEEeCcCcceEcCCCCCeEEeCCccccCCC-----cchhhcccccCCcCCCcccEEEEEeccccccCCC
Confidence 32 3 12357899999999999999999999753 344 4798765 32 469999999999999963
Q ss_pred ----CCcccccccccc---cccceeccCCCcccccccccccccCCceEEEecCCCCCCCCcccc-cCccceecCC----c
Q psy9001 905 ----QKCASYEDFVRV---VIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWN-REEFAYKKLD----F 972 (1351)
Q Consensus 905 ----~~~gty~~f~~~---~lp~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~-~~~~~y~~~d----~ 972 (1351)
..+|||.+|++. .++|||+ |+++|++.+||| +.|.|. +++..-...+ +
T Consensus 269 s~~~~~rGtYla~tE~~t~gi~hLk~-------------L~eLGVThVeLL-------Pv~df~tvdE~~~~~~~~~~~~ 328 (898)
T TIGR02103 269 SVPAELRGKYLAFTAADSAGVQHLKK-------------LADAGVTHLHLL-------PTFDIATVNEEKEKVADIQQPF 328 (898)
T ss_pred CCCcCcCceeeehhccchhhhHHHHH-------------HHhCCCcEEEEc-------ChhhcCccccccccccccccch
Confidence 357999999875 2445543 334456667777 456662 3432211000 0
Q ss_pred cceeeecCCCCCCCccccc-cCcc-eeee-cc-----cCCCCCCCC-CCcccccc-ccccccccCCCCC-------HHHH
Q psy9001 973 GKWELVLPPNPDGSCKLTH-LSQV-KLVV-RN-----QHGHLLDRF-GTPEQLKY-LVDECHKAGLFGT-------PEQL 1035 (1351)
Q Consensus 973 gy~~~~~pp~~~~~~~i~d-~~~~-~l~~-~~-----~~G~~~~~~-~sp~~hgY-~~Dy~~idp~yGt-------~edf 1035 (1351)
+--. .++|.... +...+ .... .+.. .. ..+.....- ...-++|| ...|++++++|++ +.||
T Consensus 329 ~~l~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~~d~yNWGYDP~~y~aPegSYatdp~g~~Ri~Ef 406 (898)
T TIGR02103 329 SKLC-ELNPDSKS-SEFAGYCDSGSQLKQNDSKDNPEVQALNTLVRNLDSYNWGYDPFHYTVPEGSYATDPEGPARIKEF 406 (898)
T ss_pred hhhh-cccccccc-ccccccccccccccccccccchhhhhhhhhhccCCCCCCCCCCcccCCcChhhccCCCCchHHHHH
Confidence 0000 01111100 00000 0000 0000 00 000000000 01124677 6777777777766 5799
Q ss_pred HHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCC-ccccCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHH
Q psy9001 1036 KYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQA-CFFHDGPRGTHPLW-DSRLFNYSEIEVLRFLLSNLRWYLE 1113 (1351)
Q Consensus 1036 K~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~-~yf~~~~~g~~~~w-~~~dlN~~np~Vr~~lid~l~yWl~ 1113 (1351)
|+||++||++||+||||||+|||+..+......++...+ +|++.+..|...++ |+.++|.+|++||++|+++++||++
T Consensus 407 k~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~e~~~Vrk~iiDsl~~W~~ 486 (898)
T TIGR02103 407 REMVQALNKTGLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGGVENSTCCSNTATEHRMMAKLIVDSLVVWAK 486 (898)
T ss_pred HHHHHHHHHCCCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCCeecCCCCcCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999876433333554444 44444444544443 5678999999999999999999999
Q ss_pred HhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcc-ccccc
Q psy9001 1114 EYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASC-RPVTE 1192 (1351)
Q Consensus 1114 eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~-~p~~~ 1192 (1351)
||||||||||+|+++ +..||++++++|++++|+++++||.|....... +....
T Consensus 487 ey~VDGFRfDlm~~~--------------------------~~~f~~~~~~~l~~i~pdi~l~GEgW~~~~~~~~~~~~~ 540 (898)
T TIGR02103 487 DYKVDGFRFDLMGHH--------------------------PKAQMLAAREAIKALTPEIYFYGEGWDFGEVANNRRFIN 540 (898)
T ss_pred HcCCCEEEEechhhC--------------------------CHHHHHHHHHHHHHhCCCEEEEecCCCcccccchhhhhh
Confidence 999999999999988 677899999999999999999999985332221 11111
Q ss_pred CCcccccccccccccccccccccccccCchhHhhhccCC---C-----CCCCccccCCCcccc---c-------------
Q psy9001 1193 GGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDC---S-----HFGGFNRLDPGTVYE---T------------- 1248 (1351)
Q Consensus 1193 gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~---~-----~~~gf~r~~~~~~~~---~------------- 1248 (1351)
+. +.+. .-+ .++.||+.+||++++.. . .-+||..+....... .
T Consensus 541 a~-----~~n~-------~~~-~ig~FnD~~RDavrGg~~f~~~~~~~~~~Gf~~G~~~~~~~~~~~~~~~~~~~~~~~d 607 (898)
T TIGR02103 541 AT-----QLNL-------AGT-GIGTFSDRLRDAVRGGGPFDSGDALRQNQGFGSGLAVQPNAHHGLDAASKDGALHLAD 607 (898)
T ss_pred hh-----cccc-------CCC-CeEEeccchhhHhcCCCccccccccccCcceecCcccCCcccccccchhhhhhhhhHH
Confidence 11 1111 011 35789999999998653 1 234554442110000 0
Q ss_pred -----ccC--------Ccccc--cCccccc---------cCCCCccceeeecccCCCCCcCCcccccccC-------CHH
Q psy9001 1249 -----YPE--------PWNNR--RNSIKLY---------LPTRTGIIDEVNLLNNVREERNNENNMKRYI-------QTE 1297 (1351)
Q Consensus 1249 -----~~~--------~~~~r--~~s~~~y---------~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~-------~~~ 1297 (1351)
... ...+. .++...| .|.++ |||+++||+.+.+..-..+.. +.+
T Consensus 608 ~i~~g~~Gnl~~~~~~~~~g~~~~g~~~~y~g~~~~ya~~P~e~-----inYvs~HDN~TL~D~l~~~~~~~~~~~~r~r 682 (898)
T TIGR02103 608 LTRLGMAGNLKDFVLTDHEGKVVTGEELDYNGAPAGYAADPTET-----INYVSKHDNQTLWDAISYKAAAETPSAERVR 682 (898)
T ss_pred HHHHhhcCccccccccccccccccccccccCcCccccccCHHHh-----eeeeeccCCccHHHHHHhhCCCCCCHHHHHH
Confidence 000 00000 0111111 13333 999999999876433222211 236
Q ss_pred HHHHHHHHHHccCCccEEEeecc
Q psy9001 1298 SNMNGFGIQTLPTQSPLYLVAKI 1320 (1351)
Q Consensus 1298 ~~r~A~allltspGiP~If~g~~ 1320 (1351)
+.++|++++||+||||||+||+.
T Consensus 683 ~~~la~a~~~lsQGipF~haG~E 705 (898)
T TIGR02103 683 MQAVSLSTVMLGQGIPFFHAGSE 705 (898)
T ss_pred HHHHHHHHHHHhChhhHHhcchH
Confidence 67899999999999999999943
No 25
>PRK03705 glycogen debranching enzyme; Provisional
Probab=100.00 E-value=4.9e-55 Score=543.59 Aligned_cols=452 Identities=19% Similarity=0.242 Sum_probs=295.6
Q ss_pred hccccceeecCCcEEEEeecCCccEEEEEecchhhhHHHhhccccccccccccccccCCccccCCCCCCCCCCccccccc
Q psy9001 694 YNKYGIHVQADNSVRCFEWAPSAQQLYLTGYNAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPASIHIPELH 773 (1351)
Q Consensus 694 y~~~G~~~~~~~~~~~~~WaP~A~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 773 (1351)
...+|+++++++ +.|++|||+|++|+|++|++. .
T Consensus 9 ~~pLGa~~~~~g-~~F~vwAP~A~~V~L~l~~~~-------------------------~-------------------- 42 (658)
T PRK03705 9 PTPLGAHYDGQG-VNFTLFSAHAERVELCVFDEN-------------------------G-------------------- 42 (658)
T ss_pred CCCcceEEeCCC-EEEEEECCCCCEEEEEEEcCC-------------------------C--------------------
Confidence 456999998766 999999999999999995320 0
Q ss_pred ccccCCCCCCcccccccc-ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEec----CCce-eeEEEe
Q psy9001 774 KLLERDPYLNPYQYEMKR-RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRR----YGLM-VNFLEQ 847 (1351)
Q Consensus 774 ~~~~~~~~~~~~~~~m~~-~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~----~~~~-~~~~~~ 847 (1351)
....++|++ +.|+| ++.++++..| ..|.|+|... .|.. ......
T Consensus 43 ---------~~~~~~m~~~~~gvW--------------~~~v~~~~~G-------~~Y~yrv~g~~~p~~g~~~~~~~~~ 92 (658)
T PRK03705 43 ---------QEQRYDLPARSGDIW--------------HGYLPGARPG-------LRYGYRVHGPWQPAQGHRFNPAKLL 92 (658)
T ss_pred ---------CeeeEeeeeccCCEE--------------EEEECCCCCC-------CEEEEEEccccCcccCcccCCCcEe
Confidence 001245744 58999 8888887666 5679999742 1200 013568
Q ss_pred cCcceEEEecCCCCCeee----------eeeeeCCCC---CCCCccccCCCC-CC-CCceEEEeecCCccc-CC-----C
Q psy9001 848 LSPWATYVTEPPVVGHAY----------EQRIWNPKP---QDKHKWTSSKPK-KP-ENLKIYESHVGICTQ-EQ-----K 906 (1351)
Q Consensus 848 ~dPya~~v~~~~~~~~~~----------d~~~~~p~~---~~~~~w~~~~p~-~p-~d~iIYE~HV~~~s~-~~-----~ 906 (1351)
+|||||+++.+...+..+ +.....|.. +++|+|++++++ .| +++||||+|||+||. ++ .
T Consensus 93 ~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~W~~~~~p~~~~~~~vIYE~hvr~ft~~~~~~~~~~ 172 (658)
T PRK03705 93 IDPCARQVEGEVKDDPRLHGGHDEPDYRDNAAIAPKCVVVDDHYDWEDDAPPRTPWGSTVIYEAHVRGLTYLHPEIPVEI 172 (658)
T ss_pred cCcCceEEccccccCccccccccCCccccccccCCceEEecCCCCCCCCCCCCCCccccEEEEEehhhhcccCCCCCccc
Confidence 999999998642111110 000011111 246899988743 33 899999999999996 32 3
Q ss_pred cccccccccc-cccceeccCCCcccccccccccccCCceEEEe-cCCCCCCCCcccccCccceecCCccceeeecCCCCC
Q psy9001 907 CASYEDFVRV-VIPRIVKQGDFNNWNREEFAYKKLDFGKWELV-LPPNPDGDFNNWNREEFAYKKLDFGKWELVLPPNPD 984 (1351)
Q Consensus 907 ~gty~~f~~~-~lp~ik~lG~fn~~~~~~~~l~~lg~giwel~-ip~~~~g~~Y~~~~~~~~y~~~d~gy~~~~~pp~~~ 984 (1351)
.|||.++++. .|++||+|| ++.++|+ | +.+.....
T Consensus 173 ~Gtf~g~~~~~~LdYLk~LG----------------vt~I~L~Pv--------~~~~~~~~------------------- 209 (658)
T PRK03705 173 RGTYAALGHPVMIAYLKQLG----------------ITALELLPV--------AQFASEPR------------------- 209 (658)
T ss_pred cccHHHhhcccchHHHHHcC----------------CCEEEecCc--------ccCCCccc-------------------
Confidence 6888888763 477777777 3223333 2 11100000
Q ss_pred CCccccccCcceeeecccCCCCCCCCCCcccccc-ccccccccCCCCCH-----HHHHHHHHHHHHcCCEEEEEeecccc
Q psy9001 985 GSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGTP-----EQLKYLVDECHKAGLYVLLDVVHSHA 1058 (1351)
Q Consensus 985 ~~~~i~d~~~~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt~-----edfK~LV~~aH~~GI~VILDVV~NHt 1058 (1351)
... .....+||| ++|||+++|+|||. +|||+||++||++||+||||||+|||
T Consensus 210 ---------------~~~-------~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDvV~NHt 267 (658)
T PRK03705 210 ---------------LQR-------MGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDVVFNHS 267 (658)
T ss_pred ---------------ccc-------cccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEEcccCc
Confidence 000 001246899 99999999999984 79999999999999999999999999
Q ss_pred cCCcccc-CcCCCCCC-CccccCCCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCC
Q psy9001 1059 SKNVLDG-LNEFDGTQ-ACFFHDGPRGTHPLW--DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHG 1134 (1351)
Q Consensus 1059 s~~~~~~-l~~~dg~~-~~yf~~~~~g~~~~w--~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g 1134 (1351)
+.....+ ...+++.+ .+||+....+.+.+| |+++||+++|+||++|+++++||++||||||||||+|.+|.+.
T Consensus 268 ~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid~l~~W~~e~gVDGFRfD~a~~l~~~--- 344 (658)
T PRK03705 268 AELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAIDCLRYWVETCHVDGFRFDLATVLGRT--- 344 (658)
T ss_pred cCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHHHHHHHHHHhCCCEEEEEcHhhhCcC---
Confidence 9753222 12233332 356655556666677 5689999999999999999999999999999999999988321
Q ss_pred CCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccc
Q psy9001 1135 CGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPR 1214 (1351)
Q Consensus 1135 ~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~ 1214 (1351)
..|+ . ...+++.+.. ..+.|++++|||.|...+. + ++.+. |+.
T Consensus 345 --~~~~------------~-~~~~~~ai~~--d~vl~~~~ligE~Wd~~~~--------~----~~~g~--------~~~ 387 (658)
T PRK03705 345 --PEFR------------Q-DAPLFTAIQN--DPVLSQVKLIAEPWDIGPG--------G----YQVGN--------FPP 387 (658)
T ss_pred --cccc------------h-hhHHHHHHhh--CccccceEEEEecccCCCC--------h----hhhcC--------CCc
Confidence 1221 1 1123333322 2467899999998743211 1 33333 444
Q ss_pred cccccCchhHhhhccCCCCCCCccccCCCcccccccCCcccc-cCccccccCCCCccceeeecccCCCCCcCCc------
Q psy9001 1215 VGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNR-RNSIKLYLPTRTGIIDEVNLLNNVREERNNE------ 1287 (1351)
Q Consensus 1215 ~~~e~n~~~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r-~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~------ 1287 (1351)
.+++||+.||+++ ++|.+.++....... .| .++..+|....+.+..+|||+++||..+...
T Consensus 388 ~~~~~Nd~fRd~i-------r~f~~~~~~~~~~~~-----~~l~gs~~~~~~~~~~p~~siNyv~~HD~~TL~D~~~~~~ 455 (658)
T PRK03705 388 PFAEWNDHFRDAA-------RRFWLHGDLPLGEFA-----GRFAASSDVFKRNGRLPSASINLVTAHDGFTLRDCVCFNQ 455 (658)
T ss_pred ceEEEchHHHHHH-------HHHHccCCCcHHHHH-----HHHhcchhhccccCCCCCeEEEEEEeCCCccHHHHHhhhc
Confidence 5789999999999 566655444322221 22 3344445444344555599999999643310
Q ss_pred -------c--------c--------------ccccCCHHHHHHHHHHHHccCCccEEEee-cccCC--CCccce----ee
Q psy9001 1288 -------N--------N--------------MKRYIQTESNMNGFGIQTLPTQSPLYLVA-KIEKP--CSTREV----VK 1331 (1351)
Q Consensus 1288 -------~--------r--------------~~~~~~~~~~r~A~allltspGiP~If~g-~~~~~--~~~~~~----~~ 1331 (1351)
+ + .....+.++.|+|++++|||||||||++| |+..+ |.+-.- -.
T Consensus 456 ~hn~~nge~n~dg~~~n~s~n~g~eg~~~~~~~~~~r~~~~r~~~a~l~~sqG~P~i~~GdE~grtq~G~nN~y~~~~~i 535 (658)
T PRK03705 456 KHNEANGEENRDGTNNNYSNNHGKEGLGADLDLVERRRASIHALLTTLLLSQGTPMLLAGDEHGHSQHGNNNAYCQDNAL 535 (658)
T ss_pred cchhhcccccccccccccccccCccCCCccHHHHHHHHHHHHHHHHHHHHcCCchHHHhhHHhccCCCCCCCCccCCCCc
Confidence 0 0 01111346889999999999999999999 77776 544332 34
Q ss_pred ccCCcce
Q psy9001 1332 APLPFGV 1338 (1351)
Q Consensus 1332 ~p~~~~~ 1338 (1351)
|-|+|+-
T Consensus 536 ~~~dW~~ 542 (658)
T PRK03705 536 TWLDWSQ 542 (658)
T ss_pred cccccch
Confidence 6799984
No 26
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=100.00 E-value=9.8e-54 Score=533.98 Aligned_cols=310 Identities=18% Similarity=0.241 Sum_probs=237.6
Q ss_pred ccccccCceeEEE-----EEEEEEEeecCCCCcc----ccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCc
Q psy9001 61 LVDECHKAGLLCF-----MHVVCAAGDFNNWNRE----EFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGH 131 (1351)
Q Consensus 61 l~~~~~~~gv~F~-----A~~V~LvGDFN~Wd~~----~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~ 131 (1351)
++......||+|+ |++|+|++ |++|+.. .++|.+..+|+|+++||+...| .+|+|+|+. +|.
T Consensus 12 lG~~~~~~~~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~~~gvw~~~i~~~~~g-------~~Y~y~v~~-~~~ 82 (605)
T TIGR02104 12 LGAVYTPEKTVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRGENGVWSAVLEGDLHG-------YFYTYQVCI-NGK 82 (605)
T ss_pred CccEEECCeeEEEEECCCCCEEEEEE-EcCCCCCccceEEecccCCCCEEEEEECCCCCC-------CEEEEEEEc-CCC
Confidence 4555567799999 99999996 8888643 6799988899999999987655 699999996 465
Q ss_pred eeeccCCcceEEecCCCCccceeeeeeCCCCCCCCccCCCC-C--CCCCCceEEEEecCCccCCC-----CCCCHHHHHH
Q psy9001 132 LLDRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSK-P--KKPDNLKIYESHVGICTQEQ-----KCASYEDFVR 203 (1351)
Q Consensus 132 ~~~~~DPyA~~~~~~~~~~~~~~~~~~~p~~~~~~~w~~~~-p--~~~~~~vIYE~hvr~ft~~~-----~~G~~~gi~~ 203 (1351)
...++||||+++..++..|++++...+ ++++|..++ + +.+++++|||+|||+||... .+|+|.++++
T Consensus 83 ~~~~~DPya~~~~~~~~~s~v~d~~~~-----~~~~w~~~~~~~~~~~~~~vIYElhv~~ft~~~~~~~~~~G~f~~~~e 157 (605)
T TIGR02104 83 WRETVDPYAKAVTVNGKRGAVIDLERT-----NPEGWEKDHRPRLENPEDAIIYELHIRDFSIHENSGVKNKGKYLGLTE 157 (605)
T ss_pred eEEEcCCCcceeccCCCcEEEEccccc-----CccCcccccCCCCCChhHcEEEEEecchhccCCCCCcCCCCceeeeec
Confidence 568999999999887766666653322 345788764 3 35689999999999998432 3799999887
Q ss_pred h----------hhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccc
Q psy9001 204 V----------VIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMD 273 (1351)
Q Consensus 204 ~----------~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~ 273 (1351)
+ .|||||+||||+ |||||||++.. +.+. .+ ...++|||++++||
T Consensus 158 ~~~~~~~g~~~~LdyL~~LGvt~----I~L~Pi~~~~~--------------~~~~----~~-~~~~~wGY~~~~y~--- 211 (605)
T TIGR02104 158 TGTKGPNGVSTGLDYLKELGVTH----VQLLPVFDFAG--------------VDEE----DP-NNAYNWGYDPLNYN--- 211 (605)
T ss_pred cCccccccchhHHHHHHHcCCCE----EEeCCcccccc--------------cccc----cC-CCCCCCCCCCccCC---
Confidence 5 499999999999 99999776321 0010 01 12346999999999
Q ss_pred hhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCC--CHHHHHHHHHHHHHcCCEEEEEeeccccccCCcC
Q psy9001 274 KEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFG--TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLD 351 (1351)
Q Consensus 274 ~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G--~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~ 351 (1351)
+|+++|+++ |.+| +++|||+||++||++||+||||||+|||+...
T Consensus 212 ------------------~~~~~y~~~-------------p~~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~~~~~-- 258 (605)
T TIGR02104 212 ------------------VPEGSYSTN-------------PYDPATRIRELKQMIQALHENGIRVIMDVVYNHTYSRE-- 258 (605)
T ss_pred ------------------CcChhhhcC-------------CCccchHHHHHHHHHHHHHHCCCEEEEEEEcCCccCCC--
Confidence 777666653 4444 47999999999999999999999999998642
Q ss_pred CcccCCCCCCcCc-ccCCCCCCCCCC--CccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCC
Q psy9001 352 GLNEFDGTQACFF-HDGPRGTHPLWD--SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSG 428 (1351)
Q Consensus 352 ~~~~f~g~~~~yy-~~~~~~~~~~w~--~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~ 428 (1351)
...|++..+.|| +.++.+.+.++. ++++|+++|+||++|+++++||++||||||||||+|..+
T Consensus 259 -~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e~~iDGfR~D~~~~~------------- 324 (605)
T TIGR02104 259 -ESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVKEYNIDGFRFDLMGIH------------- 324 (605)
T ss_pred -CCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHHHcCCCEEEEechhcC-------------
Confidence 235677665444 444445444332 578999999999999999999999999999999999766
Q ss_pred CccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q psy9001 429 HYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGM 470 (1351)
Q Consensus 429 ~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~~~~ 470 (1351)
..+||+++++++++.+|++++|||.|...
T Consensus 325 -------------~~~~~~~~~~~~~~~~p~~~ligE~w~~~ 353 (605)
T TIGR02104 325 -------------DIETMNEIRKALNKIDPNILLYGEGWDLG 353 (605)
T ss_pred -------------CHHHHHHHHHHHHhhCCCeEEEEccCCCC
Confidence 23577777777777777888888876543
No 27
>PLN02877 alpha-amylase/limit dextrinase
Probab=100.00 E-value=2.3e-54 Score=542.86 Aligned_cols=466 Identities=18% Similarity=0.169 Sum_probs=294.8
Q ss_pred cccceeecCCcEEEEeecCCccEEEEEecchhhhHHHhhccccccccccccccccCCccccCCCCCCCCCCccccccccc
Q psy9001 696 KYGIHVQADNSVRCFEWAPSAQQLYLTGYNAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPASIHIPELHKL 775 (1351)
Q Consensus 696 ~~G~~~~~~~~~~~~~WaP~A~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 775 (1351)
.+|+++++++ ++|++|||+|++|.|++|+++.
T Consensus 214 ~LGA~~~~~g-~~F~VWAPtA~~V~L~lyd~~~----------------------------------------------- 245 (970)
T PLN02877 214 PLGAHFSKDA-VSLYLWAPTAQAVSLCLYDDPR----------------------------------------------- 245 (970)
T ss_pred CCcceEecCC-EEEEEECCCCCEEEEEEecCCC-----------------------------------------------
Confidence 7999998776 9999999999999999963300
Q ss_pred ccCCCCCCccccccccccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecC---CceeeEEEecCcce
Q psy9001 776 LERDPYLNPYQYEMKRRYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRY---GLMVNFLEQLSPWA 852 (1351)
Q Consensus 776 ~~~~~~~~~~~~~m~~~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~---~~~~~~~~~~dPya 852 (1351)
...| ...++|+++.|+| +++++++++| ..|+|+|+... | .+++.+++||||
T Consensus 246 -~~~~---~~~~~m~~~~GVW--------------sv~v~~~~~G-------~~Y~Y~V~v~~p~~g-~~~~~~v~DPYA 299 (970)
T PLN02877 246 -GKEP---LEIVQLKESNGVW--------------SVEGPKSWEG-------CYYVYEVSVYHPSTG-KVETCYANDPYA 299 (970)
T ss_pred -Cccc---eEEecccCCCCEE--------------EEEeccCCCC-------CeeEEEEeecccCCC-cccccccCCccc
Confidence 0000 1235677669999 8999988777 45688887421 3 123567899999
Q ss_pred EEEecCCCCCeeeeeee--eCCCCCCCCcccc---CCCC--CCCCceEEEeecCCcccC------CCcccccccccc---
Q psy9001 853 TYVTEPPVVGHAYEQRI--WNPKPQDKHKWTS---SKPK--KPENLKIYESHVGICTQE------QKCASYEDFVRV--- 916 (1351)
Q Consensus 853 ~~v~~~~~~~~~~d~~~--~~p~~~~~~~w~~---~~p~--~p~d~iIYE~HV~~~s~~------~~~gty~~f~~~--- 916 (1351)
++++.|+.+++++|... |+|. +|+. ++|+ .++|+||||+|||+||.+ ..+|||.+|++.
T Consensus 300 ~als~ng~~S~vvDl~~~~~~p~-----gW~~~~~~~p~~~~~~D~VIYElHVRDFS~~d~sv~~~~RGtylgftE~~s~ 374 (970)
T PLN02877 300 RGLSADGRRTLLVDLDSDDLKPE-----GWDNLAKEKPCLLSFSDISIYELHVRDFSANDETVHPDFRGGYLAFTSQDSA 374 (970)
T ss_pred eEEecCCCceEEECCccccCCCh-----hhhhcccccCccCCCcccEEEEEeccccccCCCCCCcCCCCcchhhhhhhhh
Confidence 99999999999998753 4453 7986 2343 468999999999999974 246999999875
Q ss_pred cccceeccCCCcccccccccccccCCceEEEecCCCCCCCCccc-ccCccceecCCccc-eeeecCCCCCCCccccccCc
Q psy9001 917 VIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNW-NREEFAYKKLDFGK-WELVLPPNPDGSCKLTHLSQ 994 (1351)
Q Consensus 917 ~lp~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~-~~~~~~y~~~d~gy-~~~~~pp~~~~~~~i~d~~~ 994 (1351)
.++|||+ |+++|++.+||| +.|.| .+++..-...+... .-...|+.+.
T Consensus 375 gi~hLk~-------------LkelGVThVeLL-------PvfDf~tvdE~~~~~~~~~~~~l~~~~~~s~---------- 424 (970)
T PLN02877 375 GVLHLKK-------------LADAGLTHVHLL-------PTFQFGSVDDEKENWKCVDPKELEKLPPDSE---------- 424 (970)
T ss_pred HHHHHHH-------------HHHcCCCEEEeC-------CccccCCcccccccccccccchhccccccch----------
Confidence 2444443 333456666776 34555 23321110000000 0000111100
Q ss_pred ceeeecccCCCCCCCC-CCcccccc-ccccccccCCCCC-------HHHHHHHHHHHHHcCCEEEEEeecccccCCcccc
Q psy9001 995 VKLVVRNQHGHLLDRF-GTPEQLKY-LVDECHKAGLFGT-------PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG 1065 (1351)
Q Consensus 995 ~~l~~~~~~G~~~~~~-~sp~~hgY-~~Dy~~idp~yGt-------~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~ 1065 (1351)
.....+.... ...-++|| ...|++++++|++ +.|||+||++||++||+||||||||||+..+...
T Consensus 425 ------~~q~~v~~~~~~d~yNWGYDP~~YfaPEgSYatdP~g~~RI~efk~mV~~lH~~GI~VImDVVyNHt~~~g~~~ 498 (970)
T PLN02877 425 ------EQQAAITAIQDDDGYNWGYNPVLWGVPKGSYASNPDGPCRIIEFRKMVQALNRIGLRVVLDVVYNHLHSSGPFD 498 (970)
T ss_pred ------hhhhcccccccCCCCCCCCCccccCCCCcccccCCCCcchHHHHHHHHHHHHHCCCEEEEEECCccccCCCCcc
Confidence 0000000000 01135677 6777777777776 5799999999999999999999999998765322
Q ss_pred -CcCCCCCCC-ccccCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCC
Q psy9001 1066 -LNEFDGTQA-CFFHDGPRGTHPLW-DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGH 1142 (1351)
Q Consensus 1066 -l~~~dg~~~-~yf~~~~~g~~~~w-~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~ 1142 (1351)
...++...+ +||+.++.|...+. |+++++.+++|||++|+|+++||++||||||||||+|+++
T Consensus 499 ~~s~ld~~vP~YY~r~~~~G~~~ns~c~n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlmg~i-------------- 564 (970)
T PLN02877 499 ENSVLDKIVPGYYLRRNSDGFIENSTCVNNTASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLMGHL-------------- 564 (970)
T ss_pred hhhcccCCCCCceEEECCCCCcccCCccCCCccCCHHHHHHHHHHHHHHHHHhCCCEEEEEccccc--------------
Confidence 234555444 56666666765555 6778899999999999999999999999999999999988
Q ss_pred cccccCCcCChhHHHHHHHHHHHHHhhC--------CCeEEEEccCCCCCCcccccccCCcccc-ccccccccccccccc
Q psy9001 1143 YDEYFGLNVDTDALIYLMVANKFLHDKY--------PEIITIAEDVSGMPASCRPVTEGGTGFD-YRLGQYLHQHSILFP 1213 (1351)
Q Consensus 1143 ~~~~~g~~~d~~~~~fl~~~~~~l~~~~--------Pd~ilIaE~~~~~p~~~~p~~~gg~GFd-y~~~~~~h~~~~~f~ 1213 (1351)
....|+.++++|+++. |+++++||.|... .+. ....+-. .|.+.. -+
T Consensus 565 ------------~~~tm~~~~~~L~~i~~~~~~~dg~~i~lyGEgW~~g-~~~----~~~~~~~A~q~n~~-------g~ 620 (970)
T PLN02877 565 ------------MKRTMVRAKDALQSLTLERDGVDGSSIYLYGEGWDFG-EVA----KNGRGVNASQFNLA-------GT 620 (970)
T ss_pred ------------cHHHHHHHHHHHHHHhhhhcccCCCceEEEEeCCCCC-Ccc----cccccccccccccC-------CC
Confidence 2234456666666663 8899999999522 111 1111000 111111 11
Q ss_pred ccccccCchhHhhhccCC----CCCCCccccCCC----c-----------------------ccccccCC---cccc--c
Q psy9001 1214 RVGVEQAGKYKVVLDSDC----SHFGGFNRLDPG----T-----------------------VYETYPEP---WNNR--R 1257 (1351)
Q Consensus 1214 ~~~~e~n~~~rd~l~~d~----~~~~gf~r~~~~----~-----------------------~~~~~~~~---~~~r--~ 1257 (1351)
.++.||+.+||++++.. ..-.||..+... + ........ ..+. .
T Consensus 621 -gIg~FnD~~RDavkGg~~F~~~~~qGf~~G~~~~pn~~~~~~~~~~~~~~~~~~d~i~~glaGnl~~~~~~~~~g~~~~ 699 (970)
T PLN02877 621 -GIGSFNDRIRDAMLGGSPFGHPLQQGFVTGLFLQPNGHDQGGEDVQELMLATAKDHIQVGMAGNLKDYVLTNREGKEVK 699 (970)
T ss_pred -ceEEecchhHHHHcCCCCCCCcCCCceecccccCCcccccccchhhhhhhhhhHHHHHHHhccchhccccccccccccc
Confidence 35889999999998642 223455544210 0 00000000 0000 0
Q ss_pred Ccc--------ccc--cCCCCccceeeecccCCCCCcCCcccccccC-------CHHHHHHHHHHHHccCCccEEEeecc
Q psy9001 1258 NSI--------KLY--LPTRTGIIDEVNLLNNVREERNNENNMKRYI-------QTESNMNGFGIQTLPTQSPLYLVAKI 1320 (1351)
Q Consensus 1258 ~s~--------~~y--~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~-------~~~~~r~A~allltspGiP~If~g~~ 1320 (1351)
++. ..| .|.++ |||++|||+.+.+..-..+.. +.++.++|++|++|+||||||++|+.
T Consensus 700 g~~~~~y~~~~~~ya~~P~q~-----InYvs~HDN~TL~D~l~~~~~~~~s~~~r~r~~~la~aiv~lsQGipF~haG~E 774 (970)
T PLN02877 700 GSEVLTHDGKPVAYASSPTET-----INYVSAHDNETLFDIISLKTPMEISVDERCRINHLATSIIALSQGIPFFHAGDE 774 (970)
T ss_pred cccccccCCcccccccCHHHh-----eeeeeccCCchHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhChhhHHhcchh
Confidence 000 011 13333 999999999876443222211 23668899999999999999999943
No 28
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=100.00 E-value=5e-54 Score=538.34 Aligned_cols=446 Identities=20% Similarity=0.270 Sum_probs=295.3
Q ss_pred hccccceeecCCcEEEEeecCCccEEEEEecchhhhHHHhhccccccccccccccccCCccccCCCCCCCCCCccccccc
Q psy9001 694 YNKYGIHVQADNSVRCFEWAPSAQQLYLTGYNAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPASIHIPELH 773 (1351)
Q Consensus 694 y~~~G~~~~~~~~~~~~~WaP~A~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 773 (1351)
...+|+++++++ ++|++|||+|++|+|.+|++. .
T Consensus 4 ~~~LGa~~~~~g-~~F~vwap~A~~V~L~l~~~~-------------------------~-------------------- 37 (688)
T TIGR02100 4 PFPLGATWDGQG-VNFALFSANAEKVELCLFDAQ-------------------------G-------------------- 37 (688)
T ss_pred CcCCCeEEeCCc-EEEEEECCCCCEEEEEEEcCC-------------------------C--------------------
Confidence 346899998776 999999999999999985320 0
Q ss_pred ccccCCCCCCcccccccc-ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEec----CCcee-eEEEe
Q psy9001 774 KLLERDPYLNPYQYEMKR-RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRR----YGLMV-NFLEQ 847 (1351)
Q Consensus 774 ~~~~~~~~~~~~~~~m~~-~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~----~~~~~-~~~~~ 847 (1351)
.. ....++|.+ ..|+| +++|+++..| ..|+|+|... .|... ...+.
T Consensus 38 ----~~---~~~~~~m~~~~~gvW--------------~~~v~~~~~g-------~~Y~yrv~g~~~~~~g~~f~~~~~~ 89 (688)
T TIGR02100 38 ----EK---EEARLPLPERTDDIW--------------HGYLPGAQPG-------QLYGYRVHGPYDPENGHRFNPNKLL 89 (688)
T ss_pred ----Cc---eeeEEecccCCCCEE--------------EEEECCCCCC-------CEEEEEEeeeeCCCCCcccCcCcee
Confidence 00 012356754 58999 8889887776 5668999742 12100 23578
Q ss_pred cCcceEEEecCCC-----------------------------CCeeeeeeeeCCCCCCCCccccC-C-CCCC-CCceEEE
Q psy9001 848 LSPWATYVTEPPV-----------------------------VGHAYEQRIWNPKPQDKHKWTSS-K-PKKP-ENLKIYE 895 (1351)
Q Consensus 848 ~dPya~~v~~~~~-----------------------------~~~~~d~~~~~p~~~~~~~w~~~-~-p~~p-~d~iIYE 895 (1351)
+|||||+++.+.. +++|+| .+|+|+.+ . |..| +++||||
T Consensus 90 ~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~d---------~~~~w~~~~~~p~~~~~d~iIYE 160 (688)
T TIGR02100 90 LDPYAKALDGDLIWDDALFGYRIGHPDQDLSFDERDSAPGMPKAVVVD---------PDFDWGGDEQRPRTPWEDTIIYE 160 (688)
T ss_pred cCcCceeecCCCcccccccccccccccccccccccccccccCceEEeC---------CCCCCCCcccCCCCCccccEEEE
Confidence 9999999987632 223332 24789877 3 4433 8999999
Q ss_pred eecCCcccC------CCcccccccccc-cccceeccCCCcccccccccccccCCceEEEecCCCCCCCCcccccCcccee
Q psy9001 896 SHVGICTQE------QKCASYEDFVRV-VIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWNREEFAYK 968 (1351)
Q Consensus 896 ~HV~~~s~~------~~~gty~~f~~~-~lp~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~~~~~~y~ 968 (1351)
+|||+||.. ...|||.+++++ .||+||+|| ++ +||.+.| +.+.-+..
T Consensus 161 ~hvr~Ft~~~~~~~~~~~Gtf~Gi~~~~~LdyLk~LG-vt--------------aI~L~Pi--------~~~~~~~~--- 214 (688)
T TIGR02100 161 AHVKGFTQLHPDIPEELRGTYAGLAHPAMIDYLKKLG-VT--------------AVELLPV--------HAFIDDRH--- 214 (688)
T ss_pred EEhHHhcCCCCCCCcccccCHHHHhccchhHHHHHcC-CC--------------EEEECCc--------ccCCcccc---
Confidence 999999964 235788887764 577777777 23 2233322 11100000
Q ss_pred cCCccceeeecCCCCCCCccccccCcceeeecccCCCCCCCCCCcccccc-ccccccccCCC---CCHHHHHHHHHHHHH
Q psy9001 969 KLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLF---GTPEQLKYLVDECHK 1044 (1351)
Q Consensus 969 ~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~y---Gt~edfK~LV~~aH~ 1044 (1351)
. ..-....+||| +.|||+++|+| |+++|||+||++||+
T Consensus 215 -------------------------------------~-~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~ 256 (688)
T TIGR02100 215 -------------------------------------L-LEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHD 256 (688)
T ss_pred -------------------------------------c-cccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHH
Confidence 0 00001135899 89999999999 679999999999999
Q ss_pred cCCEEEEEeecccccCCcccc-CcCCCCCC-CccccCCCC--CCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHhCCC
Q psy9001 1045 AGLYVLLDVVHSHASKNVLDG-LNEFDGTQ-ACFFHDGPR--GTHPLW--DSRLFNYSEIEVLRFLLSNLRWYLEEYQFD 1118 (1351)
Q Consensus 1045 ~GI~VILDVV~NHts~~~~~~-l~~~dg~~-~~yf~~~~~--g~~~~w--~~~dlN~~np~Vr~~lid~l~yWl~eygVD 1118 (1351)
+||+||||||+|||+..+..+ ...+.+.. .+||+..+. +.+.+| |+++||+++|+||++|+++++||++|||||
T Consensus 257 ~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~i~d~l~~W~~e~gID 336 (688)
T TIGR02100 257 AGIEVILDVVYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQMVMDSLRYWVTEMHVD 336 (688)
T ss_pred CCCEEEEEECcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHHHHHHHHHHHHHcCCc
Confidence 999999999999999875322 12233322 356654433 444444 578999999999999999999999999999
Q ss_pred eEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccc
Q psy9001 1119 GFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFD 1198 (1351)
Q Consensus 1119 GFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFd 1198 (1351)
|||||+|..|.+...+ + + ....++++++.. ...|++++|||.|...+ ++
T Consensus 337 GfR~D~a~~l~~~~~~----~------------~-~~~~~~~~i~~d--~~~~~~~ligE~W~~~~--------~~---- 385 (688)
T TIGR02100 337 GFRFDLATTLGRELYG----F------------D-MLSGFFTAIRQD--PVLAQVKLIAEPWDIGP--------GG---- 385 (688)
T ss_pred EEEEechhhhccccCC----C------------c-ccHHHHHHHHhC--cccCCeEEEEeeecCCC--------Cc----
Confidence 9999999988432111 1 0 023345555442 36889999999874321 11
Q ss_pred cccccccccccccccccccccCchhHhhhccCCCCCCCccccCCCcccccccCCcccc-cCccccccCCCCccceeeecc
Q psy9001 1199 YRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNR-RNSIKLYLPTRTGIIDEVNLL 1277 (1351)
Q Consensus 1199 y~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r-~~s~~~y~p~~~~~~~~vnfv 1277 (1351)
++.+. |+..+++||+.||+++ ++|.+++.+....+. .+ .++...|......+..+|||+
T Consensus 386 ~~~~~--------~~~~~~~~Nd~frd~i-------r~f~~g~~~~~~~~~-----~~l~gs~~~~~~~~~~~~~~iNyv 445 (688)
T TIGR02100 386 YQVGN--------FPPGWAEWNDRYRDDM-------RRFWRGDAGMIGELA-----NRLTGSSDLFEHNGRRPWASINFV 445 (688)
T ss_pred ccccC--------CCCceEEecHHHHHHH-------HHHHcCCCCcHHHHH-----HHHhCCHhhccccCCCcCEEEEEE
Confidence 22222 4445789999999999 677777665333221 22 233344433333444459999
Q ss_pred cCCCCCcCC-------------cc--c------c--------------cccCCHHHHHHHHHHHHccCCccEEEee-ccc
Q psy9001 1278 NNVREERNN-------------EN--N------M--------------KRYIQTESNMNGFGIQTLPTQSPLYLVA-KIE 1321 (1351)
Q Consensus 1278 ~nHD~~rn~-------------~~--r------~--------------~~~~~~~~~r~A~allltspGiP~If~g-~~~ 1321 (1351)
++||..+.. ++ | . ....+.+++|+|++++||+|||||||+| |+.
T Consensus 446 ~~HD~~tl~D~~~~~~khn~~nge~n~dg~~~N~S~n~g~eG~~~~~~~~~~r~~~~r~~~a~l~~s~GiP~i~~GdE~g 525 (688)
T TIGR02100 446 TAHDGFTLRDLVSYNEKHNEANGENNRDGHNDNYSWNCGVEGPTDDPAINALRRRQQRNLLATLLLSQGTPMLLAGDEFG 525 (688)
T ss_pred eCCCCchHHHHHHhhccchhhccccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCceeeecHhhc
Confidence 999975520 00 0 0 0112347899999999999999999999 777
Q ss_pred CC--CCccc----eeeccCCcc
Q psy9001 1322 KP--CSTRE----VVKAPLPFG 1337 (1351)
Q Consensus 1322 ~~--~~~~~----~~~~p~~~~ 1337 (1351)
.. |.+-. ..+|.|+|.
T Consensus 526 ~t~~G~~n~y~~~~~~~~~dW~ 547 (688)
T TIGR02100 526 RTQQGNNNAYCQDNEIGWVDWS 547 (688)
T ss_pred cCCCCCCCCccCCCcccccCcc
Confidence 76 33222 234889998
No 29
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=100.00 E-value=9.6e-54 Score=526.09 Aligned_cols=379 Identities=25% Similarity=0.377 Sum_probs=263.3
Q ss_pred ccccc-ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecCCceeeEEEecCcceEEEe--cCCCCCe
Q psy9001 787 YEMKR-RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRYGLMVNFLEQLSPWATYVT--EPPVVGH 863 (1351)
Q Consensus 787 ~~m~~-~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~dPya~~v~--~~~~~~~ 863 (1351)
++|++ +.|+| ++++++...| ..|+|+|. | ...++||||+++. +++ .|+
T Consensus 22 ~~m~k~~~GvW--------------~~~v~~~~~G-------~~Y~y~v~---g----~~~v~DPya~~~~~~~~~-~S~ 72 (542)
T TIGR02402 22 HAMQRLGDGWF--------------EITVPPVGPG-------DRYGYVLD---D----GTPVPDPASRRQPDGVHG-PSQ 72 (542)
T ss_pred EeCeECCCCEE--------------EEEECCCCCC-------CEEEEEEe---e----eEEecCccccccccCCCC-CeE
Confidence 56755 58999 8888877666 56789884 3 3588999999964 344 366
Q ss_pred eeeeeeeCCCCCCCCccccCCC-C-CCCCceEEEeecCCcccCCCcccccccccccccceeccCCCcccccccccccccC
Q psy9001 864 AYEQRIWNPKPQDKHKWTSSKP-K-KPENLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLD 941 (1351)
Q Consensus 864 ~~d~~~~~p~~~~~~~w~~~~p-~-~p~d~iIYE~HV~~~s~~~~~gty~~f~~~~lp~ik~lG~fn~~~~~~~~l~~lg 941 (1351)
|+|. . .|+|+.+.. . ..+++||||+|||+||. .|+|.++++. ||+||+|| ++
T Consensus 73 V~d~-----~---~~~w~~~~~~~~~~~~~viYE~hv~~f~~---~G~~~gi~~~-l~yl~~LG-v~------------- 126 (542)
T TIGR02402 73 VVDP-----D---RYAWQDTGWRGRPLEEAVIYELHVGTFTP---EGTFDAAIEK-LPYLADLG-IT------------- 126 (542)
T ss_pred EecC-----c---ccCCCCccccCCCccccEEEEEEhhhcCC---CCCHHHHHHh-hHHHHHcC-CC-------------
Confidence 6665 2 467777653 2 34899999999999996 4888888764 67777777 23
Q ss_pred CceEEEecCCCCCCCCcccccCccceecCCccceeeecCCCCCCCccccccCcceeeecccCCCCCCCCCCcccccc-cc
Q psy9001 942 FGKWELVLPPNPDGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKY-LV 1020 (1351)
Q Consensus 942 ~giwel~ip~~~~g~~Y~~~~~~~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp~~hgY-~~ 1020 (1351)
.++|+ +..+ +.+..+||| ++
T Consensus 127 --~i~L~--------------------------------------------------Pi~~-------~~~~~~~GY~~~ 147 (542)
T TIGR02402 127 --AIELM--------------------------------------------------PVAQ-------FPGTRGWGYDGV 147 (542)
T ss_pred --EEEeC--------------------------------------------------cccc-------CCCCCCCCCCcc
Confidence 22333 1100 011136888 89
Q ss_pred ccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCH--
Q psy9001 1021 DECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEI-- 1098 (1351)
Q Consensus 1021 Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np-- 1098 (1351)
+|++|+|+|||++|||+||++||++||+||||||+||++.++ ..+..+. + ||... ..+.| ++++|+++|
T Consensus 148 ~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~V~NH~~~~~-~~~~~~~---~-y~~~~---~~~~w-g~~~n~~~~~~ 218 (542)
T TIGR02402 148 LPYAPHNAYGGPDDLKALVDAAHGLGLGVILDVVYNHFGPEG-NYLPRYA---P-YFTDR---YSTPW-GAAINFDGPGS 218 (542)
T ss_pred CccccccccCCHHHHHHHHHHHHHCCCEEEEEEccCCCCCcc-ccccccC---c-cccCC---CCCCC-CCccccCCCcH
Confidence 999999999999999999999999999999999999998765 2233332 2 55432 23444 457999999
Q ss_pred -HHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCC---eE
Q psy9001 1099 -EVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPE---II 1174 (1351)
Q Consensus 1099 -~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd---~i 1174 (1351)
+||++|+++++||++||||||||||++..|. +.++..||+++++.++++.|+ ++
T Consensus 219 ~~vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~----------------------~~~~~~~l~~~~~~~~~~~p~~~~~~ 276 (542)
T TIGR02402 219 DEVRRYILDNALYWLREYHFDGLRLDAVHAIA----------------------DTSAKHILEELAREVHELAAELRPVH 276 (542)
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEeCHHHhc----------------------cccHHHHHHHHHHHHHHHCCCCceEE
Confidence 9999999999999999999999999998873 233678999999999999999 99
Q ss_pred EEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchhHhhhccCCCCCC-Cccc----cCCCcccccc
Q psy9001 1175 TIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFG-GFNR----LDPGTVYETY 1249 (1351)
Q Consensus 1175 lIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~-gf~r----~~~~~~~~~~ 1249 (1351)
+|||.+.+.+.++.+...+|.|||++|+..+|+....+ +.++..+.+.. ++ .... +..++.+...
T Consensus 277 li~E~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~g~~~g~~~~--------~~~~~~~l~~~l~~g~~~~~~ 346 (542)
T TIGR02402 277 LIAESDLNDPSLVTPREDGGYGLDAQWNDDFHHALHVL--LTGERQGYYAD--------FGDPLAALAKTLRDGFVYDGE 346 (542)
T ss_pred EEEecCCCCCcccccccCCccceEEEECchHHHHHHHH--hcCCcceeecc--------cCcCHHHHHHHHHHhcccCcc
Confidence 99999988888887777788899988888776521111 11111010000 00 0000 1111111111
Q ss_pred cCCcccccCccccccCCCC-ccceeeecccCCCCCcC--CcccccccCCHHHHHHHHHHHHccCCccEEEee-cccCCC
Q psy9001 1250 PEPWNNRRNSIKLYLPTRT-GIIDEVNLLNNVREERN--NENNMKRYIQTESNMNGFGIQTLPTQSPLYLVA-KIEKPC 1324 (1351)
Q Consensus 1250 ~~~~~~r~~s~~~y~p~~~-~~~~~vnfv~nHD~~rn--~~~r~~~~~~~~~~r~A~allltspGiP~If~g-~~~~~~ 1324 (1351)
...+..+..+. |... .+...|||++|||+..| .+.|+...+..+++++|++++||+||+|||||| |+....
T Consensus 347 ~~~~~~~~~~~----~~~~~~~~~~vnfl~nHD~~gn~~~~~Rl~~~~~~~~~~la~alllt~pGiP~Iy~GqE~g~~~ 421 (542)
T TIGR02402 347 YSPFRGRPHGR----PSGDLPPHRFVVFIQNHDQIGNRALGERLSQLLSPGSLKLAAALLLLSPYTPLLFMGEEYGATT 421 (542)
T ss_pred ccccccccCCC----CCCCCCHHHEEEEccCcccccccchhhhhhhcCCHHHHHHHHHHHHHcCCCceeeccHhhcCCC
Confidence 11111111111 1110 11122999999998666 457888878888999999999999999999999 666543
No 30
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=100.00 E-value=9e-53 Score=539.43 Aligned_cols=450 Identities=18% Similarity=0.232 Sum_probs=286.3
Q ss_pred cccceeecCCcEEEEeecCCccEEEEEecchhhhHHHhhccccccccccccccccCCccccCCCCCCCCCCccccccccc
Q psy9001 696 KYGIHVQADNSVRCFEWAPSAQQLYLTGYNAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPASIHIPELHKL 775 (1351)
Q Consensus 696 ~~G~~~~~~~~~~~~~WaP~A~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 775 (1351)
.+|+++.+++.++|++|||+|++|.|++|.. .
T Consensus 318 ~LGa~~~~~g~v~F~vWAP~A~~V~L~lyd~-------------------------~----------------------- 349 (1111)
T TIGR02102 318 KLGAQLHEDGTVTLKLWSPSADHVSVVLYDK-------------------------D----------------------- 349 (1111)
T ss_pred CCCCEEecCCCEEEEEECCCCCEEEEEEEeC-------------------------C-----------------------
Confidence 6999999888789999999999999999521 0
Q ss_pred ccCCCCCCcccccccc-ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecCCceeeEEEecCcceEE
Q psy9001 776 LERDPYLNPYQYEMKR-RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRYGLMVNFLEQLSPWATY 854 (1351)
Q Consensus 776 ~~~~~~~~~~~~~m~~-~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~dPya~~ 854 (1351)
+.+. ....++|.+ +.|+| +++|++...|. .+.+|..|+|+|... + .+..++||||++
T Consensus 350 -~~~~--~~~~~~m~~~~~GvW--------------~v~v~~~~~G~-~d~~G~~Y~Y~V~~~-~---~~~~~~DPYA~a 407 (1111)
T TIGR02102 350 -DQDK--VVGTVELKKGDRGVW--------------EVQLTKENTGI-DSLTGYYYHYEITRG-G---DKVLALDPYAKS 407 (1111)
T ss_pred -CCCC--ceeeEecccCCCCEE--------------EEEECCcccCc-ccCCCceEEEEEECC-C---ceEEEeChhheE
Confidence 0000 012467855 58999 77777422111 112456789999864 3 478999999999
Q ss_pred Eec-C---------CCCCeeeeeeeeCCCCCCCCccccCCC-CCCCCceEEEeecCCcccCCCcccccccccccccce-e
Q psy9001 855 VTE-P---------PVVGHAYEQRIWNPKPQDKHKWTSSKP-KKPENLKIYESHVGICTQEQKCASYEDFVRVVIPRI-V 922 (1351)
Q Consensus 855 v~~-~---------~~~~~~~d~~~~~p~~~~~~~w~~~~p-~~p~d~iIYE~HV~~~s~~~~~gty~~f~~~~lp~i-k 922 (1351)
++. | +.+++++|....+|. .++|....+ ..++++||||+|||+||.++.++. .+ .
T Consensus 408 l~~~n~~~~~~~~~~~ks~vvD~~~~~p~---~~~~~~~~~~~~~~d~vIYElHVrdFt~d~~~~~----------~~~~ 474 (1111)
T TIGR02102 408 LAAWNDATSDDQIKVAKAAFVDPSSLGPQ---ELDFAKIENFKKREDAIIYEAHVRDFTSDPAIAG----------DLTA 474 (1111)
T ss_pred EeccCcccccccCCCCceEEEcCcccCcc---ccccccccccCCccceEEEEEechhhCcCCCCCc----------cccc
Confidence 986 4 246788887666664 466765332 356999999999999997654221 00 0
Q ss_pred ccCCCcccccccccccccCCceEEEecCCCCCCCCcccccCccceecCCccceeeecCCCCCCCccccccCcceeeeccc
Q psy9001 923 KQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQ 1002 (1351)
Q Consensus 923 ~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~~~~~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~ 1002 (1351)
..|+|.++.+++++|+++|++.++|+- .+. |++..+.. ... ..
T Consensus 475 ~~Gtf~gl~ekLdYLkeLGVT~I~LmP-------v~d------------~~~~~e~~-~~~-----------------~~ 517 (1111)
T TIGR02102 475 QFGTFAAFVEKLDYLQDLGVTHIQLLP-------VLS------------YFFVNEFK-NKE-----------------RM 517 (1111)
T ss_pred CCcCHHHHHHhHHHHHHcCCCEEEEcC-------ccc------------cccccccc-ccc-----------------cc
Confidence 124444444445555555555455551 111 11111000 000 00
Q ss_pred CCCCCCCCCCcccccc-ccccccccCCCCC--------HHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCC
Q psy9001 1003 HGHLLDRFGTPEQLKY-LVDECHKAGLFGT--------PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQ 1073 (1351)
Q Consensus 1003 ~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt--------~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~ 1073 (1351)
.. +.+ -....+||| ..+||+++++||+ ++|||+||++||++||+||||||+|||+..+ .|++..
T Consensus 518 ~~-~~~-~~~~ynWGYdp~~yfape~~Ygtdp~dp~~ri~EfK~LV~alH~~GI~VILDVVyNHt~~~~-----~f~~~~ 590 (1111)
T TIGR02102 518 LD-YAS-SNTNYNWGYDPQNYFALSGMYSEDPKDPELRIAEFKNLINEIHKRGMGVILDVVYNHTAKVY-----IFEDLE 590 (1111)
T ss_pred cc-ccc-cccccccCCCcCcCcccccccccCCcCccccHHHHHHHHHHHHHCCCEEEEecccccccccc-----cccccC
Confidence 00 000 001125899 8899999999987 6899999999999999999999999999864 344444
Q ss_pred Cccc-cCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcC
Q psy9001 1074 ACFF-HDGPRGT-HPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNV 1151 (1351)
Q Consensus 1074 ~~yf-~~~~~g~-~~~w~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~ 1151 (1351)
+.|| +.+..|. ...||++++|.++++||++|+++++||++||||||||||+|+++
T Consensus 591 p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ey~VDGFRfDl~g~~----------------------- 647 (1111)
T TIGR02102 591 PNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDEFKVDGFRFDMMGDH----------------------- 647 (1111)
T ss_pred CCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHhcCCcEEEEeccccC-----------------------
Confidence 4444 3344443 34678889999999999999999999999999999999999755
Q ss_pred ChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchhHhhhccCC
Q psy9001 1152 DTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDC 1231 (1351)
Q Consensus 1152 d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~ 1231 (1351)
...+++.++.+++++.|+++||||.|.....-.. ...+ .+.-.+.. .....+.|++.+|++++++.
T Consensus 648 ---d~~~~~~~~~~l~~~dP~~~liGE~W~~~~g~~~-~~~~--~~~~~~~~--------~~~~ig~FnD~~Rd~irg~~ 713 (1111)
T TIGR02102 648 ---DAASIEIAYKEAKAINPNIIMIGEGWRTYAGDEG-DPVQ--AADQDWMK--------YTETVGVFSDDIRNELKSGF 713 (1111)
T ss_pred ---CHHHHHHHHHHHHHhCcCEEEEEecccccCCCCc-cccc--ccchhhHh--------cCCcccEecHHHHHHHhccc
Confidence 3456788888999999999999999864211000 0000 01111111 11124678899999997542
Q ss_pred C--CCCCccccCCCcccccccCCcccccCccccc---cCCCCccceeeecccCCCCCcCCcccccc-------cC-----
Q psy9001 1232 S--HFGGFNRLDPGTVYETYPEPWNNRRNSIKLY---LPTRTGIIDEVNLLNNVREERNNENNMKR-------YI----- 1294 (1351)
Q Consensus 1232 ~--~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y---~p~~~~~~~~vnfv~nHD~~rn~~~r~~~-------~~----- 1294 (1351)
. .-++|..+..+...... ....++...| .|.+. |||++|||..+... ++.. ..
T Consensus 714 ~~~~~~gfi~G~~~~~~~l~----~~i~g~~~~~~~~~P~~~-----VnYV~aHDn~TL~D-~l~~~~~~~~~~~e~~~~ 783 (1111)
T TIGR02102 714 PNEGQPAFITGGARNVQGIF----KNIKAQPHNFEADSPGDV-----VQYIAAHDNLTLHD-VIAQSIKKDPKVAENQEE 783 (1111)
T ss_pred ccccccccccCCcccHHHHH----HhhcCCccccccCCcccE-----EEEEecCCCCchHh-hhhhccccCcccccchHH
Confidence 1 11234333322111111 0001111122 34444 99999999877621 1110 00
Q ss_pred CHHHHHHHHHHHHccCCccEEEeec
Q psy9001 1295 QTESNMNGFGIQTLPTQSPLYLVAK 1319 (1351)
Q Consensus 1295 ~~~~~r~A~allltspGiP~If~g~ 1319 (1351)
..++.|+|++++||+||||||++||
T Consensus 784 ~~~r~rla~~llllSQGiPfi~aGq 808 (1111)
T TIGR02102 784 IHRRIRLGNLMVLTSQGTAFIHSGQ 808 (1111)
T ss_pred HHHHHHHHHHHHHHhCcHhhhhcch
Confidence 1257889999999999999999994
No 31
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=100.00 E-value=1.3e-50 Score=507.55 Aligned_cols=286 Identities=24% Similarity=0.339 Sum_probs=216.0
Q ss_pred ccccccCceeEEE-----EEEEEEEeecCCCCc---cccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEec----
Q psy9001 61 LVDECHKAGLLCF-----MHVVCAAGDFNNWNR---EEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQ---- 128 (1351)
Q Consensus 61 l~~~~~~~gv~F~-----A~~V~LvGDFN~Wd~---~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~---- 128 (1351)
|+....+.||+|+ |++|+|+ .|++++. ..++|.+..+|||+++||++.+| .+|+|+|++.
T Consensus 7 LGa~~~~~g~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~~~~gvW~~~v~~~~~g-------~~Y~yrv~g~~~~~ 78 (688)
T TIGR02100 7 LGATWDGQGVNFALFSANAEKVELC-LFDAQGEKEEARLPLPERTDDIWHGYLPGAQPG-------QLYGYRVHGPYDPE 78 (688)
T ss_pred CCeEEeCCcEEEEEECCCCCEEEEE-EEcCCCCceeeEEecccCCCCEEEEEECCCCCC-------CEEEEEEeeeeCCC
Confidence 4555677899999 9999997 4665542 25789888899999999988765 5999999963
Q ss_pred CCce----eeccCCcceEEecCCCC--cc----------------------ceeeeeeCCCCCCCCccCCC--CCC-CCC
Q psy9001 129 HGHL----LDRLSPWATYVTEPPVV--GH----------------------AYEQRIWNPKPQDKHKWTSS--KPK-KPD 177 (1351)
Q Consensus 129 ~g~~----~~~~DPyA~~~~~~~~~--~~----------------------~~~~~~~~p~~~~~~~w~~~--~p~-~~~ 177 (1351)
+|.+ ..++||||++++.+... +. ...+.+.++ .|+|+++ +|. .++
T Consensus 79 ~g~~f~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~d~----~~~w~~~~~~p~~~~~ 154 (688)
T TIGR02100 79 NGHRFNPNKLLLDPYAKALDGDLIWDDALFGYRIGHPDQDLSFDERDSAPGMPKAVVVDP----DFDWGGDEQRPRTPWE 154 (688)
T ss_pred CCcccCcCceecCcCceeecCCCcccccccccccccccccccccccccccccCceEEeCC----CCCCCCcccCCCCCcc
Confidence 3432 47899999999866320 00 012334443 4789875 333 568
Q ss_pred CceEEEEecCCccCC------CCCCCHHHHHHh-hhHHHHHcCCCcCceeEEEeecccccccCccceEEEcccccccccc
Q psy9001 178 NLKIYESHVGICTQE------QKCASYEDFVRV-VIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKT 250 (1351)
Q Consensus 178 ~~vIYE~hvr~ft~~------~~~G~~~gi~~~-~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~ 250 (1351)
++||||+|||+||.. ..+|||+|++++ .|||||+||||+ |||||||++.+ +....+.
T Consensus 155 d~iIYE~hvr~Ft~~~~~~~~~~~Gtf~Gi~~~~~LdyLk~LGvta----I~L~Pi~~~~~-----------~~~~~~~- 218 (688)
T TIGR02100 155 DTIIYEAHVKGFTQLHPDIPEELRGTYAGLAHPAMIDYLKKLGVTA----VELLPVHAFID-----------DRHLLEK- 218 (688)
T ss_pred ccEEEEEEhHHhcCCCCCCCcccccCHHHHhccchhHHHHHcCCCE----EEECCcccCCc-----------ccccccc-
Confidence 999999999999852 457999999985 599999999999 99999876311 0001111
Q ss_pred ccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHH
Q psy9001 251 VAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 330 (1351)
Q Consensus 251 ~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H 330 (1351)
...++|||++.+|| +|+++|++. |+++|||+||++||
T Consensus 219 ------~~~~ywGYd~~~y~---------------------a~d~~y~~~----------------g~~~efk~LV~~~H 255 (688)
T TIGR02100 219 ------GLRNYWGYNTLGFF---------------------APEPRYLAS----------------GQVAEFKTMVRALH 255 (688)
T ss_pred ------CCCCccCcCccccc---------------------ccChhhcCC----------------CCHHHHHHHHHHHH
Confidence 13467999999999 888444331 68999999999999
Q ss_pred HcCCEEEEEeeccccccCCcCCc-ccCCCCCC-cCcccCCC--CCCCCCC--CccCCCCCHHHHHHHHHHHHHHHHHcCC
Q psy9001 331 KAGLYVLLDVVHSHASKNVLDGL-NEFDGTQA-CFFHDGPR--GTHPLWD--SRLFNYSEIEVLRFLLSNLRWYLDEYQF 404 (1351)
Q Consensus 331 ~~GI~VILDvV~NH~~~~~~~~~-~~f~g~~~-~yy~~~~~--~~~~~w~--~~~ln~~~p~v~~~l~~~l~~W~~e~~v 404 (1351)
++||+||||||+|||+..+..+. ..+.+.++ .||+..+. +.+.+|. ++++|+++|+||++|+++++||++||||
T Consensus 256 ~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~i~d~l~~W~~e~gI 335 (688)
T TIGR02100 256 DAGIEVILDVVYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQMVMDSLRYWVTEMHV 335 (688)
T ss_pred HCCCEEEEEECcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999998754443 45666553 56655443 4444553 5789999999999999999999999999
Q ss_pred Ccccccccccccc
Q psy9001 405 DGFRFDGVTSMLY 417 (1351)
Q Consensus 405 DGfR~D~a~~~~~ 417 (1351)
||||||+|..|.+
T Consensus 336 DGfR~D~a~~l~~ 348 (688)
T TIGR02100 336 DGFRFDLATTLGR 348 (688)
T ss_pred cEEEEechhhhcc
Confidence 9999999998744
No 32
>PRK03705 glycogen debranching enzyme; Provisional
Probab=100.00 E-value=1.9e-50 Score=502.64 Aligned_cols=287 Identities=22% Similarity=0.292 Sum_probs=217.7
Q ss_pred ccccccCceeEEE-----EEEEEEEeecCCC-CccccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEec----CC
Q psy9001 61 LVDECHKAGLLCF-----MHVVCAAGDFNNW-NREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQ----HG 130 (1351)
Q Consensus 61 l~~~~~~~gv~F~-----A~~V~LvGDFN~W-d~~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~----~g 130 (1351)
|+....++||+|+ |++|+|+. |+++ ....++|.+.++|+|+++||++.+| ++|+|+|+++ +|
T Consensus 12 LGa~~~~~g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~~gvW~~~v~~~~~G-------~~Y~yrv~g~~~p~~g 83 (658)
T PRK03705 12 LGAHYDGQGVNFTLFSAHAERVELCV-FDENGQEQRYDLPARSGDIWHGYLPGARPG-------LRYGYRVHGPWQPAQG 83 (658)
T ss_pred cceEEeCCCEEEEEECCCCCEEEEEE-EcCCCCeeeEeeeeccCCEEEEEECCCCCC-------CEEEEEEccccCcccC
Confidence 4445567899999 99999986 6665 3356899888899999999988765 6999999863 34
Q ss_pred ce----eeccCCcceEEecCCC---------------Ccc--ceeeeeeCCCCCCCCccCCCCCC--CCCCceEEEEecC
Q psy9001 131 HL----LDRLSPWATYVTEPPV---------------VGH--AYEQRIWNPKPQDKHKWTSSKPK--KPDNLKIYESHVG 187 (1351)
Q Consensus 131 ~~----~~~~DPyA~~~~~~~~---------------~~~--~~~~~~~~p~~~~~~~w~~~~p~--~~~~~vIYE~hvr 187 (1351)
.+ ..++||||++++.... .+. ...+.+.+ .+|+|++++++ .++++||||+|||
T Consensus 84 ~~~~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d----~~~~W~~~~~p~~~~~~~vIYE~hvr 159 (658)
T PRK03705 84 HRFNPAKLLIDPCARQVEGEVKDDPRLHGGHDEPDYRDNAAIAPKCVVVD----DHYDWEDDAPPRTPWGSTVIYEAHVR 159 (658)
T ss_pred cccCCCcEecCcCceEEccccccCccccccccCCccccccccCCceEEec----CCCCCCCCCCCCCCccccEEEEEehh
Confidence 32 4689999999986421 000 11222333 25899887553 5689999999999
Q ss_pred CccC------CCCCCCHHHHHHh-hhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCcc
Q psy9001 188 ICTQ------EQKCASYEDFVRV-VIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQA 260 (1351)
Q Consensus 188 ~ft~------~~~~G~~~gi~~~-~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~ 260 (1351)
+||. ...+|+|++++++ .|||||+||||+ |||||||++.+ +...... ...+
T Consensus 160 ~ft~~~~~~~~~~~Gtf~g~~~~~~LdYLk~LGvt~----I~L~Pv~~~~~-----------~~~~~~~-------g~~~ 217 (658)
T PRK03705 160 GLTYLHPEIPVEIRGTYAALGHPVMIAYLKQLGITA----LELLPVAQFAS-----------EPRLQRM-------GLSN 217 (658)
T ss_pred hhcccCCCCCccccccHHHhhcccchHHHHHcCCCE----EEecCcccCCC-----------ccccccc-------cccc
Confidence 9984 2458999999973 499999999999 99999776421 0001100 1246
Q ss_pred ccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q psy9001 261 LVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDV 340 (1351)
Q Consensus 261 ~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDv 340 (1351)
+|||++.+|| +|+++|+++ +. .+++|||+||++||++||+|||||
T Consensus 218 ywGYd~~~yf---------------------a~d~~ygt~-------------~~-~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 218 YWGYNPLAMF---------------------ALDPAYASG-------------PE-TALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred ccCccccccc---------------------ccccccCCC-------------Cc-chHHHHHHHHHHHHHCCCEEEEEE
Confidence 7999999999 888555543 11 457899999999999999999999
Q ss_pred eccccccCCcCCc-ccCCCCCC-cCcccCCCCCCCCCC--CccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccc
Q psy9001 341 VHSHASKNVLDGL-NEFDGTQA-CFFHDGPRGTHPLWD--SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSML 416 (1351)
Q Consensus 341 V~NH~~~~~~~~~-~~f~g~~~-~yy~~~~~~~~~~w~--~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~ 416 (1351)
|+|||+.....+. ..+.+.++ .||+.++.+.+.+|. +++||+++|+||++|+++++||++||||||||||+|..|.
T Consensus 263 V~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid~l~~W~~e~gVDGFRfD~a~~l~ 342 (658)
T PRK03705 263 VFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAIDCLRYWVETCHVDGFRFDLATVLG 342 (658)
T ss_pred cccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHHHHHHHHHHhCCCEEEEEcHhhhC
Confidence 9999997543332 34566553 566666667777786 4799999999999999999999999999999999999884
No 33
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=100.00 E-value=1.5e-49 Score=509.91 Aligned_cols=298 Identities=22% Similarity=0.328 Sum_probs=218.1
Q ss_pred ccccccCce-eEEE-----EEEEEEEe-ecCCCCc--cccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCc
Q psy9001 61 LVDECHKAG-LLCF-----MHVVCAAG-DFNNWNR--EEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGH 131 (1351)
Q Consensus 61 l~~~~~~~g-v~F~-----A~~V~LvG-DFN~Wd~--~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~ 131 (1351)
|+..+.+.| ++|+ |++|+|++ |+++|+. ..++|.+.+.|+|+++|++...|. .-.+|.+|+|+|+. .+.
T Consensus 319 LGa~~~~~g~v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~~~GvW~v~v~~~~~G~-~d~~G~~Y~Y~V~~-~~~ 396 (1111)
T TIGR02102 319 LGAQLHEDGTVTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKGDRGVWEVQLTKENTGI-DSLTGYYYHYEITR-GGD 396 (1111)
T ss_pred CCCEEecCCCEEEEEECCCCCEEEEEEEeCCCCCCceeeEecccCCCCEEEEEECCcccCc-ccCCCceEEEEEEC-CCc
Confidence 455555555 8999 99999987 6666754 368999988999999999765442 22468899999985 466
Q ss_pred eeeccCCcceEEecCC----------CCccceeeeeeCCCCCCCCccCCCCC-CCCCCceEEEEecCCccCC--------
Q psy9001 132 LLDRLSPWATYVTEPP----------VVGHAYEQRIWNPKPQDKHKWTSSKP-KKPDNLKIYESHVGICTQE-------- 192 (1351)
Q Consensus 132 ~~~~~DPyA~~~~~~~----------~~~~~~~~~~~~p~~~~~~~w~~~~p-~~~~~~vIYE~hvr~ft~~-------- 192 (1351)
...++||||+++.... ..+++++.....|+ .++|.+..+ ..+++++|||+|||+||..
T Consensus 397 ~~~~~DPYA~al~~~n~~~~~~~~~~~ks~vvD~~~~~p~---~~~~~~~~~~~~~~d~vIYElHVrdFt~d~~~~~~~~ 473 (1111)
T TIGR02102 397 KVLALDPYAKSLAAWNDATSDDQIKVAKAAFVDPSSLGPQ---ELDFAKIENFKKREDAIIYEAHVRDFTSDPAIAGDLT 473 (1111)
T ss_pred eEEEeChhheEEeccCcccccccCCCCceEEEcCcccCcc---ccccccccccCCccceEEEEEechhhCcCCCCCcccc
Confidence 6789999999997522 12333332222232 467765332 3578999999999999842
Q ss_pred CCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccc-cccccccccccCCCCccccCcccccccc
Q psy9001 193 QKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTN-RRYMEKTVAYAESHDQALVGDKTIAFWL 271 (1351)
Q Consensus 193 ~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~-~~~~e~~~~~~~s~~~~~wGY~~~~y~~ 271 (1351)
..+|+|+||+++ |||||+||||| |||||||++.- +.+..+ .+.. ++..+...++|||+|.+||
T Consensus 474 ~~~Gtf~gl~ek-LdYLkeLGVT~----I~LmPv~d~~~------~~e~~~~~~~~----~~~~~~~~ynWGYdp~~yf- 537 (1111)
T TIGR02102 474 AQFGTFAAFVEK-LDYLQDLGVTH----IQLLPVLSYFF------VNEFKNKERML----DYASSNTNYNWGYDPQNYF- 537 (1111)
T ss_pred cCCcCHHHHHHh-HHHHHHcCCCE----EEEcCcccccc------ccccccccccc----cccccccccccCCCcCcCc-
Confidence 147999999999 99999999999 99999886310 000000 0111 1111223457999999999
Q ss_pred cchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcC
Q psy9001 272 MDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLD 351 (1351)
Q Consensus 272 ~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~ 351 (1351)
+|+++|++... ...++++|||+||++||++||+||||||+|||+..+
T Consensus 538 --------------------ape~~Ygtdp~-----------dp~~ri~EfK~LV~alH~~GI~VILDVVyNHt~~~~-- 584 (1111)
T TIGR02102 538 --------------------ALSGMYSEDPK-----------DPELRIAEFKNLINEIHKRGMGVILDVVYNHTAKVY-- 584 (1111)
T ss_pred --------------------ccccccccCCc-----------CccccHHHHHHHHHHHHHCCCEEEEecccccccccc--
Confidence 77766665310 123468999999999999999999999999999863
Q ss_pred CcccCCCCCCcCccc-CCCCC-CCCCCCccCCCCCHHHHHHHHHHHHHHHHHcCCCcccccccccc
Q psy9001 352 GLNEFDGTQACFFHD-GPRGT-HPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM 415 (1351)
Q Consensus 352 ~~~~f~g~~~~yy~~-~~~~~-~~~w~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~ 415 (1351)
.|++..+.||+. +..+. ...|+++.+|++|++||++|+++++||++||||||||||+|..+
T Consensus 585 ---~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ey~VDGFRfDl~g~~ 647 (1111)
T TIGR02102 585 ---IFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDEFKVDGFRFDMMGDH 647 (1111)
T ss_pred ---cccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHhcCCcEEEEeccccC
Confidence 567776666643 33333 34577889999999999999999999999999999999998754
No 34
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.7e-48 Score=478.13 Aligned_cols=292 Identities=24% Similarity=0.320 Sum_probs=223.0
Q ss_pred ccCceeEEE-----EEEEEEE-eecCCCCc--cccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEec----CCce
Q psy9001 65 CHKAGLLCF-----MHVVCAA-GDFNNWNR--EEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQ----HGHL 132 (1351)
Q Consensus 65 ~~~~gv~F~-----A~~V~Lv-GDFN~Wd~--~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~----~g~~ 132 (1351)
+...|+.|+ |++|.|+ -|+..=.. +.++|....+.+|++.+|++.+| +.|.|++.+. .|.+
T Consensus 27 ~~~~g~~f~l~s~~a~~v~l~l~d~~~~~~~~~~~~~~~~~G~iw~~~~p~~~~g-------~~y~yr~~g~~~~~~g~~ 99 (697)
T COG1523 27 IDGDGVNFALFSSHAERVELCLFDEAGNTEEGRLYPYDGELGAIWHLWLPGAKPG-------QVYGYRVHGPYDPEEGHR 99 (697)
T ss_pred ccCcceEEeeeccccceEEEEecCcccccccccccccCCccccEEEEEcCCCcee-------eEEEEecCCCcCCccCee
Confidence 456899999 8899887 22221111 12666666677999999999876 5999999763 3444
Q ss_pred e----eccCCcceEEecCCCCc-c-c--e-------------eeeeeCCCC--CC-CCccCCCCCC--CCCCceEEEEec
Q psy9001 133 L----DRLSPWATYVTEPPVVG-H-A--Y-------------EQRIWNPKP--QD-KHKWTSSKPK--KPDNLKIYESHV 186 (1351)
Q Consensus 133 ~----~~~DPyA~~~~~~~~~~-~-~--~-------------~~~~~~p~~--~~-~~~w~~~~p~--~~~~~vIYE~hv 186 (1351)
+ ...||||+.+......+ . . + +.....|++ .+ .++|+.++++ ++.++||||+||
T Consensus 100 f~~~k~l~dpya~~l~g~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~Ksvv~~~~~~w~~~~~~~~p~~~~vIYE~HV 179 (697)
T COG1523 100 FDPNKLLLDPYAKALDGDLKWGTPALFGYYYGYQITNLSPDRDSADPYPKSVVIDPLFDWENDKPPRIPWEDTVIYEAHV 179 (697)
T ss_pred eccccccccceeEEeccccccCccccccccccccccccCccccccccCCceEEeccccccccCCCCCCCccceEEEEeee
Confidence 3 56899999998765321 0 0 0 000011221 12 2799988664 469999999999
Q ss_pred CCcc------CCCCCCCHHHHHHh-hhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCc
Q psy9001 187 GICT------QEQKCASYEDFVRV-VIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQ 259 (1351)
Q Consensus 187 r~ft------~~~~~G~~~gi~~~-~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~ 259 (1351)
|+|| ++..+|||.++++. .|+|||+||||| |||||||++. .++... .+...
T Consensus 180 r~fT~~~~~v~~~~rGTy~gl~~~~~i~yLk~LGvta----VeLLPV~~~~-----------~~~~l~-------~~gl~ 237 (697)
T COG1523 180 RDFTQLHPGVPEELRGTYLGLAEPVIIDYLKDLGVTA----VELLPVFDFY-----------DEPHLD-------KSGLN 237 (697)
T ss_pred cccccCCCCCchhhccceehhccccHHHHHHHhCCce----EEEecceEEe-----------cccccc-------ccccc
Confidence 9998 34678999999984 499999999999 9999977642 122222 23568
Q ss_pred cccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEE
Q psy9001 260 ALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLD 339 (1351)
Q Consensus 260 ~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILD 339 (1351)
|||||+|.+|| ||+++|++.. .+-+.+.|||.||+++|++||+||||
T Consensus 238 n~WGYdP~~fF---------------------Ap~~~Yss~p------------~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 238 NNWGYDPLNFF---------------------APEGRYASNP------------EPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred cccCCCccccc---------------------CCCccccCCC------------CcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 99999999999 7887787642 12456889999999999999999999
Q ss_pred eeccccccCCcCCc-ccCCCCCC-cCcccCCCCCCCCCC--CccCCCCCHHHHHHHHHHHHHHHHHcCCCcccccccccc
Q psy9001 340 VVHSHASKNVLDGL-NEFDGTQA-CFFHDGPRGTHPLWD--SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM 415 (1351)
Q Consensus 340 vV~NH~~~~~~~~~-~~f~g~~~-~yy~~~~~~~~~~w~--~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~ 415 (1351)
||||||++....+. .+|+|+++ +||+.+++|.+.+++ ||.+|++||+||++|+|+|+||++||||||||||+|+.+
T Consensus 285 VVfNHTae~~~~g~t~~f~~id~~~Yyr~~~dg~~~N~TGcGNtln~~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa~~l 364 (697)
T COG1523 285 VVFNHTAEGNELGPTLSFRGIDPNYYYRLDPDGYYSNGTGCGNTLNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDLAGVL 364 (697)
T ss_pred EeccCcccccCcCcccccccCCcCceEEECCCCCeecCCccCcccccCChHHHHHHHHHHHHHHHHhCCCceeecchhhc
Confidence 99999998765564 88999987 567777788887775 689999999999999999999999999999999999988
Q ss_pred ccc
Q psy9001 416 LYH 418 (1351)
Q Consensus 416 ~~~ 418 (1351)
.+.
T Consensus 365 ~r~ 367 (697)
T COG1523 365 GRE 367 (697)
T ss_pred ccc
Confidence 553
No 35
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=100.00 E-value=5.5e-48 Score=475.17 Aligned_cols=287 Identities=26% Similarity=0.394 Sum_probs=229.0
Q ss_pred eEEE-----EEEEEEEeecCCCCccccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeeccCCcceEEe
Q psy9001 70 LLCF-----MHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATYVT 144 (1351)
Q Consensus 70 v~F~-----A~~V~LvGDFN~Wd~~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPyA~~~~ 144 (1351)
|+|+ |++|+|+++ ...++|++.++|+|+++|++..+| ..|+|+|++ ...++||||+++.
T Consensus 1 v~FrlwAP~A~~V~L~l~-----~~~~~m~k~~~GvW~~~v~~~~~G-------~~Y~y~v~g----~~~v~DPya~~~~ 64 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLN-----GALHAMQRLGDGWFEITVPPVGPG-------DRYGYVLDD----GTPVPDPASRRQP 64 (542)
T ss_pred CEEEEECCCCCEEEEEeC-----CCEEeCeECCCCEEEEEECCCCCC-------CEEEEEEee----eEEecCccccccc
Confidence 5677 999999862 246899998899999999987655 699999974 2578999999975
Q ss_pred cCCCCccceeeeeeCCCCCCCCccCCCCC--CCCCCceEEEEecCCccCCCCCCCHHHHHHhhhHHHHHcCCCcCceeEE
Q psy9001 145 EPPVVGHAYEQRIWNPKPQDKHKWTSSKP--KKPDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIE 222 (1351)
Q Consensus 145 ~~~~~~~~~~~~~~~p~~~~~~~w~~~~p--~~~~~~vIYE~hvr~ft~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~ 222 (1351)
..... .+.+++|. .|+|++..+ +.+++++|||+|||+||+ .|+|+|++++ |||||+||||+ ||
T Consensus 65 ~~~~~----~S~V~d~~---~~~w~~~~~~~~~~~~~viYE~hv~~f~~---~G~~~gi~~~-l~yl~~LGv~~----i~ 129 (542)
T TIGR02402 65 DGVHG----PSQVVDPD---RYAWQDTGWRGRPLEEAVIYELHVGTFTP---EGTFDAAIEK-LPYLADLGITA----IE 129 (542)
T ss_pred cCCCC----CeEEecCc---ccCCCCccccCCCccccEEEEEEhhhcCC---CCCHHHHHHh-hHHHHHcCCCE----EE
Confidence 43321 24455664 578887654 357899999999999987 5999999998 99999999999 99
Q ss_pred EeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCcc
Q psy9001 223 LLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQ 302 (1351)
Q Consensus 223 L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~ 302 (1351)
|||||+ . +. ..+|||++.+|| +|+
T Consensus 130 L~Pi~~--------------------~--~~-----~~~~GY~~~~~~---------------------~~~-------- 153 (542)
T TIGR02402 130 LMPVAQ--------------------F--PG-----TRGWGYDGVLPY---------------------APH-------- 153 (542)
T ss_pred eCcccc--------------------C--CC-----CCCCCCCccCcc---------------------ccc--------
Confidence 999654 2 21 245999999999 777
Q ss_pred ccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCC
Q psy9001 303 LKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNY 382 (1351)
Q Consensus 303 ~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~ 382 (1351)
++||+++|||+||++||++||+||||+|+||++.++.. +..+ .+ ||... ....| ++.+|+
T Consensus 154 -----------~~~G~~~e~k~lV~~aH~~Gi~VilD~V~NH~~~~~~~-~~~~---~~-y~~~~---~~~~w-g~~~n~ 213 (542)
T TIGR02402 154 -----------NAYGGPDDLKALVDAAHGLGLGVILDVVYNHFGPEGNY-LPRY---AP-YFTDR---YSTPW-GAAINF 213 (542)
T ss_pred -----------cccCCHHHHHHHHHHHHHCCCEEEEEEccCCCCCcccc-cccc---Cc-cccCC---CCCCC-CCcccc
Confidence 89999999999999999999999999999999876321 1222 23 66432 23345 468999
Q ss_pred CCH---HHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCC
Q psy9001 383 SEI---EVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPE 459 (1351)
Q Consensus 383 ~~p---~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~ 459 (1351)
++| +||++|+++++||++||||||||||++..|. +.++..||+++++.+++++|+
T Consensus 214 ~~~~~~~vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~----------------------~~~~~~~l~~~~~~~~~~~p~ 271 (542)
T TIGR02402 214 DGPGSDEVRRYILDNALYWLREYHFDGLRLDAVHAIA----------------------DTSAKHILEELAREVHELAAE 271 (542)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhCCcEEEEeCHHHhc----------------------cccHHHHHHHHHHHHHHHCCC
Confidence 999 9999999999999999999999999998872 123568999999999999999
Q ss_pred ---eEEEEEcCCCCCCcccccccCCCCCC
Q psy9001 460 ---IITIAEDVSGMPASCRPVTEGGTGFD 485 (1351)
Q Consensus 460 ---~~~iaE~~~~~p~~~~~~~~gg~gfd 485 (1351)
+++|||.+...|.++.+...++.+||
T Consensus 272 ~~~~~li~E~~~~~~~~~~~~~~~~~~~d 300 (542)
T TIGR02402 272 LRPVHLIAESDLNDPSLVTPREDGGYGLD 300 (542)
T ss_pred CceEEEEEecCCCCCcccccccCCccceE
Confidence 99999998777766655444444443
No 36
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4e-49 Score=485.42 Aligned_cols=384 Identities=23% Similarity=0.335 Sum_probs=266.5
Q ss_pred cccccc-ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecCCceeeEEEecCcceEEEecCCCCCee
Q psy9001 786 QYEMKR-RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRYGLMVNFLEQLSPWATYVTEPPVVGHA 864 (1351)
Q Consensus 786 ~~~m~~-~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~dPya~~v~~~~~~~~~ 864 (1351)
.+.|.+ ..|+| ...+.++.+...+...+..|.|.+....- ..+.+||++|+|+.+..
T Consensus 99 ~f~~~k~l~dpy--------------a~~l~g~~~~~~~~~~~y~~~~~~~~~~~----~~~~~~~~~Ksvv~~~~---- 156 (697)
T COG1523 99 RFDPNKLLLDPY--------------AKALDGDLKWGTPALFGYYYGYQITNLSP----DRDSADPYPKSVVIDPL---- 156 (697)
T ss_pred eeccccccccce--------------eEEeccccccCccccccccccccccccCc----cccccccCCceEEeccc----
Confidence 355644 58999 66667666554333334455566653332 47888999999987652
Q ss_pred eeeeeeCCCCCCCCccccCCCC-CC-CCceEEEeecCCcc-cC-----CCcccccccccc-cccceeccCCCcccccccc
Q psy9001 865 YEQRIWNPKPQDKHKWTSSKPK-KP-ENLKIYESHVGICT-QE-----QKCASYEDFVRV-VIPRIVKQGDFNNWNREEF 935 (1351)
Q Consensus 865 ~d~~~~~p~~~~~~~w~~~~p~-~p-~d~iIYE~HV~~~s-~~-----~~~gty~~f~~~-~lp~ik~lG~fn~~~~~~~ 935 (1351)
++|+.++|+ .| +++||||+|||+|| .+ +.+|||.++++. .++++|+||
T Consensus 157 -------------~~w~~~~~~~~p~~~~vIYE~HVr~fT~~~~~v~~~~rGTy~gl~~~~~i~yLk~LG---------- 213 (697)
T COG1523 157 -------------FDWENDKPPRIPWEDTVIYEAHVRDFTQLHPGVPEELRGTYLGLAEPVIIDYLKDLG---------- 213 (697)
T ss_pred -------------cccccCCCCCCCccceEEEEeeecccccCCCCCchhhccceehhccccHHHHHHHhC----------
Confidence 457777643 45 99999999999999 33 357999999874 366666666
Q ss_pred cccccCCceEEEe-------cCCCC-CCCCcccccCccceecCCccceeeecCCCCCCCccccccCcceeeecccCCCCC
Q psy9001 936 AYKKLDFGKWELV-------LPPNP-DGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLL 1007 (1351)
Q Consensus 936 ~l~~lg~giwel~-------ip~~~-~g~~Y~~~~~~~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~~G~~~ 1007 (1351)
++.+||+ .+++. .+..|+|||++..|. .++|.|+
T Consensus 214 ------vtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fF--------------------------------Ap~~~Ys 255 (697)
T COG1523 214 ------VTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFF--------------------------------APEGRYA 255 (697)
T ss_pred ------CceEEEecceEEeccccccccccccccCCCccccc--------------------------------CCCcccc
Confidence 3445555 23333 566677888777763 3444444
Q ss_pred CCCCCccccccccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCc-cccCcCCCCCCC-ccccCCCCCCC
Q psy9001 1008 DRFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNV-LDGLNEFDGTQA-CFFHDGPRGTH 1085 (1351)
Q Consensus 1008 ~~~~sp~~hgY~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~-~~~l~~~dg~~~-~yf~~~~~g~~ 1085 (1351)
+.+. | -+.+.|||.||+++|++||+||||||||||+... ......|++.++ +||+.++.|.+
T Consensus 256 s~p~-p---------------~~~i~EfK~mV~~lHkaGI~VILDVVfNHTae~~~~g~t~~f~~id~~~Yyr~~~dg~~ 319 (697)
T COG1523 256 SNPE-P---------------ATRIKEFKDMVKALHKAGIEVILDVVFNHTAEGNELGPTLSFRGIDPNYYYRLDPDGYY 319 (697)
T ss_pred CCCC-c---------------chHHHHHHHHHHHHHHcCCEEEEEEeccCcccccCcCcccccccCCcCceEEECCCCCe
Confidence 4333 3 2568899999999999999999999999998743 334556777765 57777777888
Q ss_pred CCC--CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHH
Q psy9001 1086 PLW--DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVAN 1163 (1351)
Q Consensus 1086 ~~w--~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~ 1163 (1351)
.++ |+|.+|.++|+||++|+|+|+||++||||||||||+|+.+.+. ++
T Consensus 320 ~N~TGcGNtln~~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa~~l~r~-----------------------~~------- 369 (697)
T COG1523 320 SNGTGCGNTLNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDLAGVLGRE-----------------------TM------- 369 (697)
T ss_pred ecCCccCcccccCChHHHHHHHHHHHHHHHHhCCCceeecchhhcccc-----------------------cc-------
Confidence 777 7899999999999999999999999999999999999988322 11
Q ss_pred HHHHhhCCCeEEEEccCC---CCCCcccccccCCccccccccccccccccccc--ccccccCchhHhhhccCCCCCCCcc
Q psy9001 1164 KFLHDKYPEIITIAEDVS---GMPASCRPVTEGGTGFDYRLGQYLHQHSILFP--RVGVEQAGKYKVVLDSDCSHFGGFN 1238 (1351)
Q Consensus 1164 ~~l~~~~Pd~ilIaE~~~---~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~--~~~~e~n~~~rd~l~~d~~~~~gf~ 1238 (1351)
..+..|.+++++|.|. +...+.+||+.|-.| |++|. || ..+++||+.|||.+ ++|+
T Consensus 370 --~~~~~~~l~~~~~~~p~l~~~kliAepwD~g~~g--yqvG~--------Fpd~~~~aewng~~rD~v-------r~F~ 430 (697)
T COG1523 370 --LFDINANLFLAGEGDPVLSGVKLIAEPWDIGPGG--YQVGN--------FPDSPRWAEWNGRFRDDV-------RRFW 430 (697)
T ss_pred --ccccCcchhhhccCCccccCceeeecchhhcCCC--ccccc--------CCCccchhhhCCcccccc-------ccee
Confidence 1223344444444332 222334455554223 77777 66 67899999999988 8999
Q ss_pred ccCCCcccccccCCcccc-cCccccccCCCCccceeeecccCCCCCcC--------------------------------
Q psy9001 1239 RLDPGTVYETYPEPWNNR-RNSIKLYLPTRTGIIDEVNLLNNVREERN-------------------------------- 1285 (1351)
Q Consensus 1239 r~~~~~~~~~~~~~~~~r-~~s~~~y~p~~~~~~~~vnfv~nHD~~rn-------------------------------- 1285 (1351)
+++.+....+. .| .+|.++|....+.+..+|||+++||..+.
T Consensus 431 ~G~~~~~~~~a-----~rl~gS~d~~~~~~~~p~~sINyv~aHDgfTL~D~vsy~~khneange~nrdg~~~n~s~N~g~ 505 (697)
T COG1523 431 RGDAGLVGEFA-----KRLAGSSDLYKRNGRRPSQSINYVTAHDGFTLWDLVSYNHKHNEANGENNRDGHNDNYSWNHGV 505 (697)
T ss_pred eCCCccHHHHH-----HHhhcCcchhhccCCCccceeeEEeecCCCcHhHhhhhccCCChhhcchhhhhhhhhhcccccc
Confidence 99877655543 33 45556777666666666999999995221
Q ss_pred ---CcccccccCCHHHHHHHHHHHHccCCccEEEee-cccC
Q psy9001 1286 ---NENNMKRYIQTESNMNGFGIQTLPTQSPLYLVA-KIEK 1322 (1351)
Q Consensus 1286 ---~~~r~~~~~~~~~~r~A~allltspGiP~If~g-~~~~ 1322 (1351)
.+.......+..+.++.++.+|++||+||+.+| |...
T Consensus 506 eg~t~~p~i~~~re~~~~~~~~tlllsqG~pml~~gDe~~r 546 (697)
T COG1523 506 EGPTGDPFIHAGRERQRTNLLATLLLSQGTPMLLAGDEFGR 546 (697)
T ss_pred ccCCCCHHHHHhHHHHHHHHHHHHHhhcCCccccccccccc
Confidence 011111122446778888999999999999999 7766
No 37
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=100.00 E-value=1.2e-48 Score=513.49 Aligned_cols=452 Identities=17% Similarity=0.184 Sum_probs=297.8
Q ss_pred hhccccceeecCCcEEEEeecCCccEEEEEecchhhhHHHhhccccccccccccccccCCccccCCCCCCCCCCcccccc
Q psy9001 693 SYNKYGIHVQADNSVRCFEWAPSAQQLYLTGYNAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPASIHIPEL 772 (1351)
Q Consensus 693 ~y~~~G~~~~~~~~~~~~~WaP~A~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 (1351)
....+|+++..++ +.|++|||.|++|.|++|+.|.. .
T Consensus 12 ~~~plGA~~~~~g-v~F~v~ap~A~~V~L~lf~~~~~-----------------------------------~------- 48 (1221)
T PRK14510 12 FREPLGAVPDGGG-VNLALFSGAAERVEFCLFDLWGV-----------------------------------R------- 48 (1221)
T ss_pred CCCCCceEEECCe-EEEEEECCCCCEEEEEEEECCCC-----------------------------------C-------
Confidence 3457999998766 99999999999999999643100 0
Q ss_pred cccccCCCCCCccccccc-cccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecCCce----e-eEEE
Q psy9001 773 HKLLERDPYLNPYQYEMK-RRYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRYGLM----V-NFLE 846 (1351)
Q Consensus 773 ~~~~~~~~~~~~~~~~m~-~~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~----~-~~~~ 846 (1351)
....++|. +..|+| ++.|++...| ..|.|++....+.. . ....
T Consensus 49 ----------~~~~~~l~~~~g~vW--------------~~~i~~~~~g-------~~Ygyrv~g~~~p~~g~rf~p~~~ 97 (1221)
T PRK14510 49 ----------EEARIKLPGRTGDVW--------------HGFIVGVGPG-------ARYGNRQEGPGGPGEGHRFNPPKL 97 (1221)
T ss_pred ----------eeEEEECCCCcCCEE--------------EEEEccCCCC-------cEEEEEeccCCCcccccccCCCeE
Confidence 01234563 458999 7777776665 45789886433200 0 0246
Q ss_pred ecCcceEEEecCCCC-Ceeee------------eeeeCCC--CCCCCccccCCCC-CC-CCceEEEeecCCccc-CC---
Q psy9001 847 QLSPWATYVTEPPVV-GHAYE------------QRIWNPK--PQDKHKWTSSKPK-KP-ENLKIYESHVGICTQ-EQ--- 905 (1351)
Q Consensus 847 ~~dPya~~v~~~~~~-~~~~d------------~~~~~p~--~~~~~~w~~~~p~-~p-~d~iIYE~HV~~~s~-~~--- 905 (1351)
.+||||++++..... ..++. .....|+ ..++|+|+.++++ .+ ++++|||+|||+||. ++
T Consensus 98 ~lDPYA~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~pk~vv~~~~~W~~~~~~~~~~~d~vIYE~hvr~ft~~~~~~g 177 (1221)
T PRK14510 98 LVDPYARPLDRPFWLHQAIFDDRFFNGDEDLTDSAVLVPKVVVPTPFTWAPRSPLHGDWDDSPLYEMNVRGFTLRHDFFP 177 (1221)
T ss_pred eeCCCCceEeCCcccCcccccccccCCCcccccCcccCccceeecccccCCCCCCCCCcccCeEEEEccchhhccCCCCC
Confidence 899999999874321 11221 1122232 1236899877743 34 899999999999996 32
Q ss_pred --Cccccccccc-ccccceeccCCCcccccccccccccCCceEEEecCCCCCCCCcccccCccceecCCccceeeecCCC
Q psy9001 906 --KCASYEDFVR-VVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGDFNNWNREEFAYKKLDFGKWELVLPPN 982 (1351)
Q Consensus 906 --~~gty~~f~~-~~lp~ik~lG~fn~~~~~~~~l~~lg~giwel~ip~~~~g~~Y~~~~~~~~y~~~d~gy~~~~~pp~ 982 (1351)
..|+|.++.+ ..+++||+|| ++.++|+- .+.+. ++..
T Consensus 178 g~~~Gt~~~l~~~~~i~yLk~LG----------------vt~I~L~P-------i~~~~-~~~~---------------- 217 (1221)
T PRK14510 178 GNLRGTFAKLAAPEAISYLKKLG----------------VSIVELNP-------IFASV-DEHH---------------- 217 (1221)
T ss_pred cccCcHHhhcCCchhHHHHHHcC----------------CCEEEeCC-------ccccC-cccc----------------
Confidence 2466666652 3455666665 44444441 11100 0000
Q ss_pred CCCCccccccCcceeeecccCCCCCCCCCCcccccc-ccccccccCCCC--CHHHHHHHHHHHHHcCCEEEEEeeccccc
Q psy9001 983 PDGSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFG--TPEQLKYLVDECHKAGLYVLLDVVHSHAS 1059 (1351)
Q Consensus 983 ~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yG--t~edfK~LV~~aH~~GI~VILDVV~NHts 1059 (1351)
.. ......+||| +.|||+++|+|| +++|||+||++||++||+||||||+|||+
T Consensus 218 -----------------~~-------~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDvV~NHt~ 273 (1221)
T PRK14510 218 -----------------LP-------QLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDVVFNHTG 273 (1221)
T ss_pred -----------------cc-------cccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEEcccccc
Confidence 00 0112246899 899999999999 99999999999999999999999999999
Q ss_pred CCcccc-CcCCCCC-CCccccCC--CCCCCCC-C-CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCC
Q psy9001 1060 KNVLDG-LNEFDGT-QACFFHDG--PRGTHPL-W-DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNH 1133 (1351)
Q Consensus 1060 ~~~~~~-l~~~dg~-~~~yf~~~--~~g~~~~-w-~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~ 1133 (1351)
.++..+ ...+.+. ...||+.. ..+.+.+ | |++.+|+++|+|+++|+++++||++ |||||||||+|..|.+
T Consensus 274 ~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~~i~d~lr~Wv~-~gVDGfRfDla~~l~r--- 349 (1221)
T PRK14510 274 ESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILRLPMDVLRSWAK-RGVDGFRLDLADELAR--- 349 (1221)
T ss_pred CCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHHHHHHHHHHHHH-hCCCEEEEechhhhcc---
Confidence 875322 1122222 23566543 2233333 3 5678999999999999999999999 9999999999998832
Q ss_pred CCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEE-----EEccCCCCCCcccccccCCcccccccccccccc
Q psy9001 1134 GCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIIT-----IAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQH 1208 (1351)
Q Consensus 1134 g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~il-----IaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~ 1208 (1351)
.+..||+.++..++++.|+.++ |||.|...+ ++ |+.+.
T Consensus 350 --------------------~~~~f~~~~~~~l~ai~~d~~l~~~~ligE~Wd~~~--------~~----~~~g~----- 392 (1221)
T PRK14510 350 --------------------EPDGFIDEFRQFLKAMDQDPVLRRLKMIAEVWDDGL--------GG----YQYGK----- 392 (1221)
T ss_pred --------------------CccchHHHHHHHHHHhCCCcCcccCcEEEecccCCC--------Cc----cccCC-----
Confidence 1345888999999999999887 999874321 11 33333
Q ss_pred cccccccccccCchhHhhhccCCCCCCCccccCCCcccccccCCcccc-cCccccccCCCCccceeeecccCCCCCcCC-
Q psy9001 1209 SILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNR-RNSIKLYLPTRTGIIDEVNLLNNVREERNN- 1286 (1351)
Q Consensus 1209 ~~~f~~~~~e~n~~~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r-~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~- 1286 (1351)
|+..+++||+.||+++ ++|.+++.+....+. .+ .++...|......+..+|||++|||..|..
T Consensus 393 ---f~~~~~~~N~~frd~v-------r~f~~g~~~~~~~~a-----~~l~gs~d~~~~~~~~~~~~iNfi~~HD~~rl~d 457 (1221)
T PRK14510 393 ---FPQYWGEWNDPLRDIM-------RRFWLGDIGMAGELA-----TRLAGSADIFPHRRRNFSRSINFITAHDGFTLLD 457 (1221)
T ss_pred ---CCcceeeeccHHHHHH-------HHHhcCCCchHHHHH-----HHHhCcHhhcCccCCCcccceEEEeeCCchHHHH
Confidence 3434688999999999 677777655332221 22 233344443333344449999999965430
Q ss_pred ------------c--------cccc--------------ccCCHHHHHHHHHHHHccCCccEEEee-ccc------CCCC
Q psy9001 1287 ------------E--------NNMK--------------RYIQTESNMNGFGIQTLPTQSPLYLVA-KIE------KPCS 1325 (1351)
Q Consensus 1287 ------------~--------~r~~--------------~~~~~~~~r~A~allltspGiP~If~g-~~~------~~~~ 1325 (1351)
+ .+.. ...+.+++|+|++++||+|||||||+| |+. ..+-
T Consensus 458 l~~y~~khN~ange~nrdg~~~n~s~n~g~eg~t~~~~~~~~r~~~~r~a~~~l~~s~GiP~Iy~GdE~g~tq~Gn~n~y 537 (1221)
T PRK14510 458 LVSFNHKHNEANGEDNRDGTPDNQSWNCGVEGYTLDAAIRSLRRRRLRLLLLTLMSFPGVPMLYYGDEAGRSQNGNNNGY 537 (1221)
T ss_pred HhhhccccchhccccccCCCCccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCcEEecchhcccccCCCCCCC
Confidence 0 0000 111346789999999999999999999 776 3333
Q ss_pred ccceeeccCCcce
Q psy9001 1326 TREVVKAPLPFGV 1338 (1351)
Q Consensus 1326 ~~~~~~~p~~~~~ 1338 (1351)
.....+++|||+-
T Consensus 538 ~~~~~r~~~~W~~ 550 (1221)
T PRK14510 538 AQDNNRGTYPWGN 550 (1221)
T ss_pred CCCCccccCCccc
Confidence 3456789999974
No 38
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=100.00 E-value=4.7e-48 Score=488.08 Aligned_cols=334 Identities=15% Similarity=0.208 Sum_probs=246.0
Q ss_pred ccccccCceeEEE-----EEEEEEEeecCCCC-ccccceeec-CCCeEEEEcCCCCCCCcccCcccEEEEEEEec---CC
Q psy9001 61 LVDECHKAGLLCF-----MHVVCAAGDFNNWN-REEFAYKKL-DFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQ---HG 130 (1351)
Q Consensus 61 l~~~~~~~gv~F~-----A~~V~LvGDFN~Wd-~~~~~M~k~-~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~---~g 130 (1351)
|+....++||+|+ |++|+|++..++++ ...++|.+. ..|+|++++|+...| .+|+|+|+.. .|
T Consensus 128 LGa~~~~~gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~~~~GVWsv~v~g~~~G-------~~Y~Y~V~v~~p~~G 200 (898)
T TIGR02103 128 LGATLTDSGVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRDSTSGVWSAEGGSSWKG-------AYYRYEVTVYHPSTG 200 (898)
T ss_pred CCcEEeCCcEEEEEECCCCCEEEEEEEcCCCCccceEeCccCCCCCEEEEEECcCCCC-------CEeEEEEEEecCCCC
Confidence 4555567899999 99999997666653 456899886 689999999987655 6999999842 25
Q ss_pred --ceeeccCCcceEEecCCCCccceeee--eeCCCCCCCCccCCCC---CC--CCCCceEEEEecCCccC------CCCC
Q psy9001 131 --HLLDRLSPWATYVTEPPVVGHAYEQR--IWNPKPQDKHKWTSSK---PK--KPDNLKIYESHVGICTQ------EQKC 195 (1351)
Q Consensus 131 --~~~~~~DPyA~~~~~~~~~~~~~~~~--~~~p~~~~~~~w~~~~---p~--~~~~~vIYE~hvr~ft~------~~~~ 195 (1351)
+..+++||||++++.+...|++++.. .|.|+ .|...+ |+ .+++++|||+|||+||. ...+
T Consensus 201 ~v~~~~v~DPYA~als~n~~~S~VvDl~~~~~~p~-----~W~~~~~p~p~~~~~~d~iIYElHVRDFS~~d~s~~~~~r 275 (898)
T TIGR02103 201 KVETYLVTDPYSVSLSANSEYSQVVDLNDPALKPE-----GWDALAMPKPQLASFADMVLYELHIRDFSANDESVPAELR 275 (898)
T ss_pred eECCeEEeCcCcceEcCCCCCeEEeCCccccCCCc-----chhhcccccCCcCCCcccEEEEEeccccccCCCCCCcCcC
Confidence 34678999999999887788887642 34444 898654 32 57899999999999973 2468
Q ss_pred CCHHHHHHh------hhHHHHHcCCCcCceeEEEeecccccccCcc--c---eEEEccc--------------------c
Q psy9001 196 ASYEDFVRV------VIPRIVKQGMAIPDKWIELLKKFKDEDWNMG--N---IVHTLTN--------------------R 244 (1351)
Q Consensus 196 G~~~gi~~~------~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~--~---ii~~~~~--------------------~ 244 (1351)
|+|.+++++ .|++|++||||| |+|||||+|..-+=. + +-+++.. .
T Consensus 276 GtYla~tE~~t~gi~hLk~L~eLGVTh----VeLLPv~df~tvdE~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 351 (898)
T TIGR02103 276 GKYLAFTAADSAGVQHLKKLADAGVTH----LHLLPTFDIATVNEEKEKVADIQQPFSKLCELNPDSKSSEFAGYCDSGS 351 (898)
T ss_pred ceeeehhccchhhhHHHHHHHhCCCcE----EEEcChhhcCccccccccccccccchhhhhccccccccccccccccccc
Confidence 999999985 355555779999 999999986521100 0 0000000 0
Q ss_pred ccccccc----------cccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCC
Q psy9001 245 RYMEKTV----------AYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAG 314 (1351)
Q Consensus 245 ~~~e~~~----------~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~ 314 (1351)
.+.+... ..-...+.+||||+|.+|| +|+++|++.. .
T Consensus 352 ~~~~~~~~~~~~~q~~v~~~~~~d~yNWGYDP~~y~---------------------aPegSYatdp------------~ 398 (898)
T TIGR02103 352 QLKQNDSKDNPEVQALNTLVRNLDSYNWGYDPFHYT---------------------VPEGSYATDP------------E 398 (898)
T ss_pred cccccccccchhhhhhhhhhccCCCCCCCCCCcccC---------------------CcChhhccCC------------C
Confidence 0000000 0000123579999999999 5565555531 0
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCccc-CCCCCCCCCC-CccCCCCCHHHHHHHH
Q psy9001 315 LFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHD-GPRGTHPLWD-SRLFNYSEIEVLRFLL 392 (1351)
Q Consensus 315 ~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~-~~~~~~~~w~-~~~ln~~~p~v~~~l~ 392 (1351)
...++.|||+||++||++||+||||||+|||+..+......|+...+.||++ +..+...++. ..+++++||+||++|+
T Consensus 399 g~~Ri~Efk~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~e~~~Vrk~ii 478 (898)
T TIGR02103 399 GPARIKEFREMVQALNKTGLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGGVENSTCCSNTATEHRMMAKLIV 478 (898)
T ss_pred CchHHHHHHHHHHHHHHCCCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCCeecCCCCcCCCCCCHHHHHHHH
Confidence 1135899999999999999999999999999987654445577776656654 3344443332 3567999999999999
Q ss_pred HHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEcCCC
Q psy9001 393 SNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSG 469 (1351)
Q Consensus 393 ~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~~~ 469 (1351)
++++||++||||||||||+|.++ ..+||+++++++++++|+++++||.|..
T Consensus 479 Dsl~~W~~ey~VDGFRfDlm~~~--------------------------~~~f~~~~~~~l~~i~pdi~l~GEgW~~ 529 (898)
T TIGR02103 479 DSLVVWAKDYKVDGFRFDLMGHH--------------------------PKAQMLAAREAIKALTPEIYFYGEGWDF 529 (898)
T ss_pred HHHHHHHHHcCCCEEEEechhhC--------------------------CHHHHHHHHHHHHHhCCCEEEEecCCCc
Confidence 99999999999999999999977 4679999999999999999999999863
No 39
>PLN02877 alpha-amylase/limit dextrinase
Probab=100.00 E-value=8e-46 Score=465.94 Aligned_cols=329 Identities=17% Similarity=0.193 Sum_probs=235.0
Q ss_pred ccccccCceeEEE-----EEEEEEEeecCCCCc----cccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEec---
Q psy9001 61 LVDECHKAGLLCF-----MHVVCAAGDFNNWNR----EEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQ--- 128 (1351)
Q Consensus 61 l~~~~~~~gv~F~-----A~~V~LvGDFN~Wd~----~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~--- 128 (1351)
|+....+++|+|+ |++|+|+. |++++. ..++|+ ..+|||++++++...| .+|+|+|+..
T Consensus 215 LGA~~~~~g~~F~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m~-~~~GVWsv~v~~~~~G-------~~Y~Y~V~v~~p~ 285 (970)
T PLN02877 215 LGAHFSKDAVSLYLWAPTAQAVSLCL-YDDPRGKEPLEIVQLK-ESNGVWSVEGPKSWEG-------CYYVYEVSVYHPS 285 (970)
T ss_pred CcceEecCCEEEEEECCCCCEEEEEE-ecCCCCccceEEeccc-CCCCEEEEEeccCCCC-------CeeEEEEeecccC
Confidence 5556677899999 99999984 555532 246786 6689999999987665 6999999832
Q ss_pred CC--ceeeccCCcceEEecCCCCccceeee--eeCCCCCCCCccCC---CCCC--CCCCceEEEEecCCccC------CC
Q psy9001 129 HG--HLLDRLSPWATYVTEPPVVGHAYEQR--IWNPKPQDKHKWTS---SKPK--KPDNLKIYESHVGICTQ------EQ 193 (1351)
Q Consensus 129 ~g--~~~~~~DPyA~~~~~~~~~~~~~~~~--~~~p~~~~~~~w~~---~~p~--~~~~~vIYE~hvr~ft~------~~ 193 (1351)
.| +..+++||||++++.+...+++.+.. .|.|+ .|.. .+|+ .+++++|||+|||+||. ..
T Consensus 286 ~g~~~~~~v~DPYA~als~ng~~S~vvDl~~~~~~p~-----gW~~~~~~~p~~~~~~D~VIYElHVRDFS~~d~sv~~~ 360 (970)
T PLN02877 286 TGKVETCYANDPYARGLSADGRRTLLVDLDSDDLKPE-----GWDNLAKEKPCLLSFSDISIYELHVRDFSANDETVHPD 360 (970)
T ss_pred CCcccccccCCccceEEecCCCceEEECCccccCCCh-----hhhhcccccCccCCCcccEEEEEeccccccCCCCCCcC
Confidence 13 34578999999999887777776532 34444 8975 2343 46899999999999984 24
Q ss_pred CCCCHHHHHHh---h---hHHHHHcCCCcCceeEEEeecccccccCccce-EEEcccccccccccccc-----------C
Q psy9001 194 KCASYEDFVRV---V---IPRIVKQGMAIPDKWIELLKKFKDEDWNMGNI-VHTLTNRRYMEKTVAYA-----------E 255 (1351)
Q Consensus 194 ~~G~~~gi~~~---~---L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~i-i~~~~~~~~~e~~~~~~-----------~ 255 (1351)
.+|+|.+++++ . |+|||+||||| |||||+|+|..-+=.+- ...+.+..+... +.. .
T Consensus 361 ~RGtylgftE~~s~gi~hLk~LkelGVTh----VeLLPvfDf~tvdE~~~~~~~~~~~~l~~~--~~~s~~~q~~v~~~~ 434 (970)
T PLN02877 361 FRGGYLAFTSQDSAGVLHLKKLADAGLTH----VHLLPTFQFGSVDDEKENWKCVDPKELEKL--PPDSEEQQAAITAIQ 434 (970)
T ss_pred CCCcchhhhhhhhhHHHHHHHHHHcCCCE----EEeCCccccCCcccccccccccccchhccc--cccchhhhhcccccc
Confidence 68999999985 3 55555669999 99999998642110000 000000001110 100 1
Q ss_pred CCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCE
Q psy9001 256 SHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLY 335 (1351)
Q Consensus 256 s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~ 335 (1351)
..+.+||||+|.+|| +|+++|++... . -.++.|||+||++||++||+
T Consensus 435 ~~d~yNWGYDP~~Yf---------------------aPEgSYatdP~-----------g-~~RI~efk~mV~~lH~~GI~ 481 (970)
T PLN02877 435 DDDGYNWGYNPVLWG---------------------VPKGSYASNPD-----------G-PCRIIEFRKMVQALNRIGLR 481 (970)
T ss_pred cCCCCCCCCCccccC---------------------CCCcccccCCC-----------C-cchHHHHHHHHHHHHHCCCE
Confidence 124589999999999 66666665210 1 13689999999999999999
Q ss_pred EEEEeeccccccCCcCCc-ccCCCCCCcC-cccCCCCCCCCCC-CccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccc
Q psy9001 336 VLLDVVHSHASKNVLDGL-NEFDGTQACF-FHDGPRGTHPLWD-SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGV 412 (1351)
Q Consensus 336 VILDvV~NH~~~~~~~~~-~~f~g~~~~y-y~~~~~~~~~~w~-~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a 412 (1351)
||||||||||+..++++. ..++...+.| |+.++.|...+.. ++..+.++++||++|+|+++||++||||||||||+|
T Consensus 482 VImDVVyNHt~~~g~~~~~s~ld~~vP~YY~r~~~~G~~~ns~c~n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlm 561 (970)
T PLN02877 482 VVLDVVYNHLHSSGPFDENSVLDKIVPGYYLRRNSDGFIENSTCVNNTASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLM 561 (970)
T ss_pred EEEEECCccccCCCCcchhhcccCCCCCceEEECCCCCcccCCccCCCccCCHHHHHHHHHHHHHHHHHhCCCEEEEEcc
Confidence 999999999988765543 5677777644 4545556555432 456688999999999999999999999999999999
Q ss_pred cccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhC--------CCeEEEEEcCC
Q psy9001 413 TSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKY--------PEIITIAEDVS 468 (1351)
Q Consensus 413 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~--------P~~~~iaE~~~ 468 (1351)
.++. ...|+.++++++++. |.++++||.|.
T Consensus 562 g~i~--------------------------~~tm~~~~~~L~~i~~~~~~~dg~~i~lyGEgW~ 599 (970)
T PLN02877 562 GHLM--------------------------KRTMVRAKDALQSLTLERDGVDGSSIYLYGEGWD 599 (970)
T ss_pred cccc--------------------------HHHHHHHHHHHHHHhhhhcccCCCceEEEEeCCC
Confidence 9871 234556666666663 88999999996
No 40
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=100.00 E-value=4.5e-45 Score=479.71 Aligned_cols=285 Identities=20% Similarity=0.239 Sum_probs=214.6
Q ss_pred ccccccCceeEEE-----EEEEEEEeecCCCCcc---ccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCC--
Q psy9001 61 LVDECHKAGLLCF-----MHVVCAAGDFNNWNRE---EFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHG-- 130 (1351)
Q Consensus 61 l~~~~~~~gv~F~-----A~~V~LvGDFN~Wd~~---~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g-- 130 (1351)
++....++||+|+ |++|.|+ .|++|+.. .++|....+|||+++|++..+| ++|+|++++..+
T Consensus 16 lGA~~~~~gv~F~v~ap~A~~V~L~-lf~~~~~~~~~~~~l~~~~g~vW~~~i~~~~~g-------~~Ygyrv~g~~~p~ 87 (1221)
T PRK14510 16 LGAVPDGGGVNLALFSGAAERVEFC-LFDLWGVREEARIKLPGRTGDVWHGFIVGVGPG-------ARYGNRQEGPGGPG 87 (1221)
T ss_pred CceEEECCeEEEEEECCCCCEEEEE-EEECCCCCeeEEEECCCCcCCEEEEEEccCCCC-------cEEEEEeccCCCcc
Confidence 4455567899999 9999997 78888643 4677666789999999988766 599999986432
Q ss_pred --ce----eeccCCcceEEecCCC--Cccc-----------eeeeeeCCCC--CCCCccCCCCCC--CCCCceEEEEecC
Q psy9001 131 --HL----LDRLSPWATYVTEPPV--VGHA-----------YEQRIWNPKP--QDKHKWTSSKPK--KPDNLKIYESHVG 187 (1351)
Q Consensus 131 --~~----~~~~DPyA~~~~~~~~--~~~~-----------~~~~~~~p~~--~~~~~w~~~~p~--~~~~~vIYE~hvr 187 (1351)
.+ ...+||||+.+..+.. .++. .++.+..|++ .++|+|.+.+++ .+++++|||+|||
T Consensus 88 ~g~rf~p~~~~lDPYA~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~pk~vv~~~~~W~~~~~~~~~~~d~vIYE~hvr 167 (1221)
T PRK14510 88 EGHRFNPPKLLVDPYARPLDRPFWLHQAIFDDRFFNGDEDLTDSAVLVPKVVVPTPFTWAPRSPLHGDWDDSPLYEMNVR 167 (1221)
T ss_pred cccccCCCeEeeCCCCceEeCCcccCcccccccccCCCcccccCcccCccceeecccccCCCCCCCCCcccCeEEEEccc
Confidence 21 3689999999987532 1110 1122233332 125899876653 5689999999999
Q ss_pred CccC------CCCCCCHHHHHH-hhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCcc
Q psy9001 188 ICTQ------EQKCASYEDFVR-VVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQA 260 (1351)
Q Consensus 188 ~ft~------~~~~G~~~gi~~-~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~ 260 (1351)
+||. ++.+|+|+++.+ ..|||||+||||+ |||||||++. .+.+..+ ....+
T Consensus 168 ~ft~~~~~~gg~~~Gt~~~l~~~~~i~yLk~LGvt~----I~L~Pi~~~~-----------~~~~~~~-------~g~~~ 225 (1221)
T PRK14510 168 GFTLRHDFFPGNLRGTFAKLAAPEAISYLKKLGVSI----VELNPIFASV-----------DEHHLPQ-------LGLSN 225 (1221)
T ss_pred hhhccCCCCCcccCcHHhhcCCchhHHHHHHcCCCE----EEeCCccccC-----------ccccccc-------ccCcC
Confidence 9974 345799999882 2499999999999 9999977531 1111111 12357
Q ss_pred ccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCC--CHHHHHHHHHHHHHcCCEEEE
Q psy9001 261 LVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFG--TPEQLKYLVDECHKAGLYVLL 338 (1351)
Q Consensus 261 ~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G--~~~efk~LV~~~H~~GI~VIL 338 (1351)
||||++.+|| +|+ |+|| +++|||+||++||++||+|||
T Consensus 226 yWGY~~~~yf---------------------a~d-------------------p~yg~~~~~efk~lV~~~H~~GI~VIL 265 (1221)
T PRK14510 226 YWGYNTVAFL---------------------APD-------------------PRLAPGGEEEFAQAIKEAQSAGIAVIL 265 (1221)
T ss_pred cCCCCCCCCC---------------------CcC-------------------hhhccCcHHHHHHHHHHHHHCCCEEEE
Confidence 8999999999 888 8888 999999999999999999999
Q ss_pred EeeccccccCCcCCc-ccCCCCC-CcCcccCC--CCCCCCCC--CccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccc
Q psy9001 339 DVVHSHASKNVLDGL-NEFDGTQ-ACFFHDGP--RGTHPLWD--SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGV 412 (1351)
Q Consensus 339 DvV~NH~~~~~~~~~-~~f~g~~-~~yy~~~~--~~~~~~w~--~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a 412 (1351)
|||+|||+.++..+. ..+.+.+ +.||+..+ .+.+.+|. ++.+|+++|+|+++|+++++||++ |||||||||+|
T Consensus 266 DvV~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~~i~d~lr~Wv~-~gVDGfRfDla 344 (1221)
T PRK14510 266 DVVFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILRLPMDVLRSWAK-RGVDGFRLDLA 344 (1221)
T ss_pred EEccccccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHHHHHHHHHHHHH-hCCCEEEEech
Confidence 999999998865543 3455544 45666442 33455554 468999999999999999999999 99999999999
Q ss_pred cccc
Q psy9001 413 TSML 416 (1351)
Q Consensus 413 ~~~~ 416 (1351)
..|.
T Consensus 345 ~~l~ 348 (1221)
T PRK14510 345 DELA 348 (1221)
T ss_pred hhhc
Confidence 9884
No 41
>PRK10785 maltodextrin glucosidase; Provisional
Probab=100.00 E-value=1.3e-39 Score=405.93 Aligned_cols=357 Identities=16% Similarity=0.174 Sum_probs=241.6
Q ss_pred EEEEEEEeecCCCCccccceeecC----CCeEEEEcCCC-CCCCcccCcccEEEEEEEecCCceeeccCCcceEEecCCC
Q psy9001 74 MHVVCAAGDFNNWNREEFAYKKLD----FGKWELVLPPN-PDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATYVTEPPV 148 (1351)
Q Consensus 74 A~~V~LvGDFN~Wd~~~~~M~k~~----~GvW~~~ip~~-~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPyA~~~~~~~~ 148 (1351)
+++|.|.-...+ .....+|++.. ...|++.|+-. ..+ -..|.|+|... ++..+. +.-...- ..+.
T Consensus 33 ~~~v~l~~~~~~-~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~------~~~Y~F~l~~~-~~~~~~-~~~g~~~-~~~~ 102 (598)
T PRK10785 33 PQRVMLRCEPDN-EEYLLPMEKQRSQPQVTAWRASLPLNSGQP------RRRYSFKLLWH-DRQRWF-TPQGFSR-RPPA 102 (598)
T ss_pred eEEEEEEEEcCC-CEEEEEeEEeecCCCceEEEEEEEcCCCCc------eEEEEEEEEeC-CEEEEE-cCCceee-ccCC
Confidence 567888643322 12457888732 35799999743 222 24788888753 332221 1100000 0000
Q ss_pred CccceeeeeeCCCCCCCCccC--CCCCCCCCCceEEEEecCCccCC-------C--------------------------
Q psy9001 149 VGHAYEQRIWNPKPQDKHKWT--SSKPKKPDNLKIYESHVGICTQE-------Q-------------------------- 193 (1351)
Q Consensus 149 ~~~~~~~~~~~p~~~~~~~w~--~~~p~~~~~~vIYE~hvr~ft~~-------~-------------------------- 193 (1351)
+. ..|.+. ...|.+.++.||||+.+..|-.. .
T Consensus 103 ----------~~---~~f~~~~~~~~P~W~~~~v~YqIfpDRF~ng~~~n~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 169 (598)
T PRK10785 103 ----------RL---EQFAVDVPDQGPQWVADQVFYQIFPDRFARSLPREAVQDHVYYHHAAGQEIILRDWDEPVTAQAG 169 (598)
T ss_pred ----------Cc---cceEeeCCCCCCchhhcCEEEEechhhhcCCCcccCccCCceeeccCCCcccccCcCCCcccccc
Confidence 00 012221 12344669999999999988311 0
Q ss_pred ----CCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccc
Q psy9001 194 ----KCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAF 269 (1351)
Q Consensus 194 ----~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y 269 (1351)
.-|+|+||+++ |||||+||||+ |||+|||+ . ..+|||++.||
T Consensus 170 ~~~f~GGDl~GI~~k-LdYL~~LGv~~----I~L~Pif~--------------------s---------~s~hgYd~~Dy 215 (598)
T PRK10785 170 GSTFYGGDLDGISEK-LPYLKKLGVTA----LYLNPIFT--------------------A---------PSVHKYDTEDY 215 (598)
T ss_pred cccccCcCHHHHHHH-HHHHHHcCCCE----EEeCCccc--------------------C---------CCCCCcCcccc
Confidence 03899999999 99999999999 99999663 1 12489999999
Q ss_pred cccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCC
Q psy9001 270 WLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNV 349 (1351)
Q Consensus 270 ~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~ 349 (1351)
+ +++ |+||+.++|++||++||++||+||||+|+|||+.++
T Consensus 216 ~---------------------~iD-------------------p~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~~~ 255 (598)
T PRK10785 216 R---------------------HVD-------------------PQLGGDAALLRLRHATQQRGMRLVLDGVFNHTGDSH 255 (598)
T ss_pred c---------------------ccC-------------------cccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCCCC
Confidence 9 666 999999999999999999999999999999999987
Q ss_pred cCCccc-------CCCCCC---cCcccCCCCCCCCCCC----ccCCCCCHHHHHHHHH----HHHHHHHH-cCCCccccc
Q psy9001 350 LDGLNE-------FDGTQA---CFFHDGPRGTHPLWDS----RLFNYSEIEVLRFLLS----NLRWYLDE-YQFDGFRFD 410 (1351)
Q Consensus 350 ~~~~~~-------f~g~~~---~yy~~~~~~~~~~w~~----~~ln~~~p~v~~~l~~----~l~~W~~e-~~vDGfR~D 410 (1351)
.+.... +....+ .||...+.+.+..|.+ ++||++||+|+++|++ +++||+++ |||||||+|
T Consensus 256 ~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~~~~w~g~~~lPdLN~~np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlD 335 (598)
T PRK10785 256 PWFDRHNRGTGGACHHPDSPWRDWYSFSDDGRALDWLGYASLPKLDFQSEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLD 335 (598)
T ss_pred HHHHHhhccccccccCCCCCcceeeEECCCCCcCCcCCCCcCccccCCCHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEe
Confidence 553211 111122 3555444555666754 5899999999999995 89999997 999999999
Q ss_pred cccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEcCC----------------------
Q psy9001 411 GVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVS---------------------- 468 (1351)
Q Consensus 411 ~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~~---------------------- 468 (1351)
+|..+... .+ ......||+++++++++.+|++++|||.|.
T Consensus 336 va~~v~~~-----~~-------------~~~~~~f~~~~~~~vk~~~pd~~ligE~~~~~~~~l~~~~~d~~mny~~f~~ 397 (598)
T PRK10785 336 VVHMLGEG-----GG-------------ARNNLQHVAGITQAAKEENPEAYVLGEHFGDARQWLQADVEDAAMNYRGFAF 397 (598)
T ss_pred cHhHhccc-----cC-------------ccccHHHHHHHHHHHHhhCCCeEEEEeccCChhhhccCccccccccchhhhh
Confidence 99876211 00 112457899999999999999999999652
Q ss_pred ----------------------------------------------------------------------------CCCC
Q psy9001 469 ----------------------------------------------------------------------------GMPA 472 (1351)
Q Consensus 469 ----------------------------------------------------------------------------~~p~ 472 (1351)
|.|.
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~l~nHD~~R~~~~~~~~~~~~kla~~ll~t~pGiP~ 477 (598)
T PRK10785 398 PLRAFLANTDIAYHPQQIDAQTCAAWMDEYRAGLPHQQQLRQFNQLDSHDTARFKTLLGGDKARMPLALVWLFTWPGVPC 477 (598)
T ss_pred HHHHHhhccccccCccCCCHHHHHHHHHHHHHhCCHHHHHHhhhccCCCccchhhhhhCCCHHHHHHHHHHHHhCCCCcE
Confidence 3333
Q ss_pred cccccccCCCC---CCCcCC--cCCCCCCCcHHHHHHHHHHhhhcccccccCCcceEeecCCCcEEEEEeC----ceEEE
Q psy9001 473 SCRPVTEGGTG---FDYRLE--IRPDMSDMTVGTFDAAMNTTEERFKWLSADPGYVSTKHEGDKVIIFERA----GLLFA 543 (1351)
Q Consensus 473 ~~~~~~~gg~g---fd~~~~--~~~d~~~~sl~~f~k~L~~Lr~~~~~L~~g~~~~~~~~~~~~Vlaf~R~----~ll~v 543 (1351)
|+++.|.|-.| .+.+-. |.....+.++++|+|+|++||+++++|+.|. +..+. .+++|++|.|. .++||
T Consensus 478 IYYGdE~G~~g~~dp~~R~~m~W~~~~~~~~l~~~~r~Li~lRk~~~aL~~G~-~~~l~-~~~~v~af~R~~~~~~vlVv 555 (598)
T PRK10785 478 IYYGDEVGLDGGNDPFCRKPFPWDEAKQDGALLALYQRMIALRKKSQALRRGG-CQVLY-AEGNVVVFARVLQQQRVLVA 555 (598)
T ss_pred EEeeeeccccCCCCCCccCCcCCCcccCchHHHHHHHHHHHHHhhCcccccCc-EEEEE-eCCCEEEEEEECCCCEEEEE
Confidence 33333332111 111111 2211134578999999999999999999984 34333 34679999995 79999
Q ss_pred EeCC
Q psy9001 544 FNFN 547 (1351)
Q Consensus 544 ~Nf~ 547 (1351)
+|++
T Consensus 556 iN~s 559 (598)
T PRK10785 556 INRG 559 (598)
T ss_pred EECC
Confidence 9998
No 42
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=100.00 E-value=6.4e-38 Score=387.72 Aligned_cols=204 Identities=22% Similarity=0.298 Sum_probs=152.1
Q ss_pred CCCCceEEEEecCCccCC--CCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEcccccccccccc
Q psy9001 175 KPDNLKIYESHVGICTQE--QKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVA 252 (1351)
Q Consensus 175 ~~~~~vIYE~hvr~ft~~--~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~ 252 (1351)
++++++|||++|++|+.. +..|+|+|++++ ||||++||||+ |||+|||+ . +
T Consensus 2 W~~~~viYqi~~~~f~d~~~~~~Gdl~gi~~~-Ldyl~~LGv~~----i~L~Pi~~--------------------~--~ 54 (539)
T TIGR02456 2 WYKDAVFYEVHVRSFFDSNGDGIGDFPGLTSK-LDYLKWLGVDA----LWLLPFFQ--------------------S--P 54 (539)
T ss_pred ccccceEEEEehhHhhcCCCCCccCHHHHHHh-HHHHHHCCCCE----EEECCCcC--------------------C--C
Confidence 468999999999999643 458999999999 99999999999 99999553 2 1
Q ss_pred ccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHc
Q psy9001 253 YAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 332 (1351)
Q Consensus 253 ~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~ 332 (1351)
+.+|||++.||+ +++ |+||+.++||+||++||++
T Consensus 55 ------~~~~gY~~~dy~---------------------~vd-------------------~~~Gt~~df~~Lv~~ah~~ 88 (539)
T TIGR02456 55 ------LRDDGYDVSDYR---------------------AIL-------------------PEFGTIDDFKDFVDEAHAR 88 (539)
T ss_pred ------CCCCCCCccccc---------------------ccC-------------------hhhCCHHHHHHHHHHHHHC
Confidence 234899999999 666 9999999999999999999
Q ss_pred CCEEEEEeeccccccCCcCCcccCC---CCCCcCcccCC-C------------CCCCCCC----------------CccC
Q psy9001 333 GLYVLLDVVHSHASKNVLDGLNEFD---GTQACFFHDGP-R------------GTHPLWD----------------SRLF 380 (1351)
Q Consensus 333 GI~VILDvV~NH~~~~~~~~~~~f~---g~~~~yy~~~~-~------------~~~~~w~----------------~~~l 380 (1351)
||+||||+|+||++.++++...... +....||.... . .....|. .++|
T Consensus 89 Gi~vilD~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdl 168 (539)
T TIGR02456 89 GMRVIIDLVLNHTSDQHPWFQEARSNPDGPYRDFYVWSDTDEKYKDTRIIFVDTEKSNWTFDPVAKQYYWHRFFSHQPDL 168 (539)
T ss_pred CCEEEEEeccCcCCCCCHHHHHHhhCCCCCCCceEEecCCCcccccccccccccCCCCccccCCcCeeEEecccCCCCcc
Confidence 9999999999999998765422111 11122332110 0 0111231 3589
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccC-chHHHHHHHHHHHHHhhCCC
Q psy9001 381 NYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVD-TDALIYLMVANKFLHDKYPE 459 (1351)
Q Consensus 381 n~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~f~~~~~~~v~~~~P~ 459 (1351)
|+++|+||++|++++++|++ +||||||||++..|.....+ . ..+ .+..+||+++++.+++.+|+
T Consensus 169 n~~np~vr~~l~~~~~~w~~-~GvDGfRlDav~~~~~~~~~---~-----------~~~~p~~~~f~~~~~~~v~~~~p~ 233 (539)
T TIGR02456 169 NYDNPAVHDAVHDVMRFWLD-LGVDGFRLDAVPYLYEREGT---S-----------CENLPETHEFLKRLRKMVDREYPG 233 (539)
T ss_pred CCCCHHHHHHHHHHHHHHHH-cCCCEEEEecHHhhhccCCC---c-----------cCCCchHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999998 89999999999887321100 0 011 12356777777777777777
Q ss_pred eEEEEEc
Q psy9001 460 IITIAED 466 (1351)
Q Consensus 460 ~~~iaE~ 466 (1351)
+++|||.
T Consensus 234 ~~~iaE~ 240 (539)
T TIGR02456 234 RMLLAEA 240 (539)
T ss_pred eEEEEEe
Confidence 7777774
No 43
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=100.00 E-value=8e-37 Score=377.52 Aligned_cols=211 Identities=20% Similarity=0.265 Sum_probs=152.5
Q ss_pred CCCCceEEEEecCCccC--CCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEcccccccccccc
Q psy9001 175 KPDNLKIYESHVGICTQ--EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVA 252 (1351)
Q Consensus 175 ~~~~~vIYE~hvr~ft~--~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~ 252 (1351)
++++.+|||+|+++|+. .+..|+|+|++++ ||||++||||+ |||+|||+ . +
T Consensus 1 W~~~~v~Y~i~~~~f~~~~~~~~G~~~gi~~~-l~yl~~lG~~~----i~l~Pi~~--------------------~--~ 53 (543)
T TIGR02403 1 WWQKKVIYQIYPKSFYDSTGDGTGDLRGIIEK-LDYLKKLGVDY----IWLNPFYV--------------------S--P 53 (543)
T ss_pred CcccCEEEEEEhHHHhcCCCCCccCHHHHHHh-HHHHHHcCCCE----EEECCccc--------------------C--C
Confidence 46889999999999964 4568999999998 99999999999 99999663 2 1
Q ss_pred ccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHc
Q psy9001 253 YAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 332 (1351)
Q Consensus 253 ~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~ 332 (1351)
.+.+||++.||+ +++ |+||+.++|++||++||++
T Consensus 54 ------~~~~gY~~~d~~---------------------~id-------------------~~~Gt~~~~~~lv~~ah~~ 87 (543)
T TIGR02403 54 ------QKDNGYDVSDYY---------------------AIN-------------------PLFGTMADFEELVSEAKKR 87 (543)
T ss_pred ------CCCCCCCccccC---------------------ccC-------------------cccCCHHHHHHHHHHHHHC
Confidence 123799999999 666 9999999999999999999
Q ss_pred CCEEEEEeeccccccCCcCCcccCCC--CCCcCcc-cCCCCCC-CC---------CC----------------CccCCCC
Q psy9001 333 GLYVLLDVVHSHASKNVLDGLNEFDG--TQACFFH-DGPRGTH-PL---------WD----------------SRLFNYS 383 (1351)
Q Consensus 333 GI~VILDvV~NH~~~~~~~~~~~f~g--~~~~yy~-~~~~~~~-~~---------w~----------------~~~ln~~ 383 (1351)
||+||||+|+|||+.++.|......+ .-..||. .++.+.. .+ |. .++||+.
T Consensus 88 gi~vilD~v~NH~~~~~~~f~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdln~~ 167 (543)
T TIGR02403 88 NIKIMLDMVFNHTSTEHEWFKKALAGDSPYRDFYIWRDPKGKPPTNWQSKFGGSAWEYFGDTGQYYLHLFDKTQADLNWE 167 (543)
T ss_pred CCEEEEEECccccccchHHHHHhhcCCCcccCceEecCCCCCCCCcccccCCCcCccccCCCCceEEeccCCcCCccCCC
Confidence 99999999999999987654322222 1112331 1111110 01 21 3589999
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCc----cccCCCccCchHHHHHHHHHHHHHhhCCC
Q psy9001 384 EIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHY----DEYFGLNVDTDALIYLMVANKFLHDKYPE 459 (1351)
Q Consensus 384 ~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~----~~~~~~~~~~~~~~f~~~~~~~v~~~~P~ 459 (1351)
||+|+++|+++++||++ +||||||||+|.+|..... +.... ..++. ...+..+||+++++.+++ .|+
T Consensus 168 np~v~~~i~~~~~~W~~-~giDGfRlDa~~~i~~~~~-----~~~~~~~~~~~~~~--~~~~~~~f~~~~~~~~~~-~~~ 238 (543)
T TIGR02403 168 NPEVREELKDVVNFWRD-KGVDGFRLDVINLISKDQF-----FEDDEIGDGRRFYT--DGPRVHEYLQEMNQEVFG-DND 238 (543)
T ss_pred CHHHHHHHHHHHHHHHH-cCCCEEEEeeehhhccCcc-----cCCCCCCCCccccC--CChHHHHHHHHHHHHhhc-cCC
Confidence 99999999999999997 7999999999998842210 11000 00000 112345677777777766 677
Q ss_pred eEEEEEcC
Q psy9001 460 IITIAEDV 467 (1351)
Q Consensus 460 ~~~iaE~~ 467 (1351)
+++|||.|
T Consensus 239 ~~lvgE~~ 246 (543)
T TIGR02403 239 SVTVGEMS 246 (543)
T ss_pred eEEEEEeC
Confidence 77777754
No 44
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=100.00 E-value=5.6e-36 Score=369.66 Aligned_cols=172 Identities=20% Similarity=0.244 Sum_probs=135.3
Q ss_pred CCCCCCCceEEEEecCCccC--CCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccc
Q psy9001 172 KPKKPDNLKIYESHVGICTQ--EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEK 249 (1351)
Q Consensus 172 ~p~~~~~~vIYE~hvr~ft~--~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~ 249 (1351)
.|.++++.||||+++++|.. .+..|+|+|++++ ||||++||||+ |||+|||+ .
T Consensus 4 ~~~W~~~~v~Yqi~~~~f~d~~~~~~Gdl~gi~~~-ldyl~~lGv~~----i~l~P~~~--------------------~ 58 (551)
T PRK10933 4 LPHWWQNGVIYQIYPKSFQDTTGSGTGDLRGVTQR-LDYLQKLGVDA----IWLTPFYV--------------------S 58 (551)
T ss_pred cchhhhcCeEEEEEchHhhcCCCCCCcCHHHHHHh-hHHHHhCCCCE----EEECCCCC--------------------C
Confidence 35578999999999999963 4568999999999 99999999999 99999553 1
Q ss_pred cccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHH
Q psy9001 250 TVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 329 (1351)
Q Consensus 250 ~~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~ 329 (1351)
+ +..|||++.||+ +++ |+|||.+||++||++|
T Consensus 59 --~------~~~~gY~~~d~~---------------------~id-------------------~~~Gt~~d~~~lv~~~ 90 (551)
T PRK10933 59 --P------QVDNGYDVANYT---------------------AID-------------------PTYGTLDDFDELVAQA 90 (551)
T ss_pred --C------CCCCCCCcccCC---------------------CcC-------------------cccCCHHHHHHHHHHH
Confidence 1 223899999999 666 9999999999999999
Q ss_pred HHcCCEEEEEeeccccccCCcCCcccCCCCCC--cCcc--cC-----CCCCC-----CC--CC--------------Ccc
Q psy9001 330 HKAGLYVLLDVVHSHASKNVLDGLNEFDGTQA--CFFH--DG-----PRGTH-----PL--WD--------------SRL 379 (1351)
Q Consensus 330 H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~--~yy~--~~-----~~~~~-----~~--w~--------------~~~ 379 (1351)
|++||+||||+|+||++.+++|.........+ .||. .. +.... .. |. .++
T Consensus 91 h~~gi~vilD~V~NH~s~~~~wf~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pd 170 (551)
T PRK10933 91 KSRGIRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYYLHLFAPEQAD 170 (551)
T ss_pred HHCCCEEEEEECCCCccCchhHHHhhcCCCCCCcCceEecCCCCCCCCCcccccCCCccccccCCCCceEeecccccCCc
Confidence 99999999999999999988664332221111 2331 11 00000 00 11 358
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCcccccccccccc
Q psy9001 380 FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLY 417 (1351)
Q Consensus 380 ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~ 417 (1351)
||+.||+||++|+++++||++ +||||||+|+|.+|..
T Consensus 171 Ln~~np~V~~~l~~~~~~W~~-~GvDGfRlDa~~~i~~ 207 (551)
T PRK10933 171 LNWENPAVRAELKKVCEFWAD-RGVDGLRLDVVNLISK 207 (551)
T ss_pred cCCCCHHHHHHHHHHHHHHHH-CCCcEEEEcchhhcCc
Confidence 999999999999999999996 9999999999999853
No 45
>PRK10785 maltodextrin glucosidase; Provisional
Probab=100.00 E-value=1.8e-36 Score=377.91 Aligned_cols=280 Identities=15% Similarity=0.176 Sum_probs=185.4
Q ss_pred CCCCCCcccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCC-----------CCCCC
Q psy9001 1007 LDRFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-----------DGTQA 1074 (1351)
Q Consensus 1007 ~~~~~sp~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~-----------dg~~~ 1074 (1351)
+|+|.++++||| ++||++|||+|||.+|||+||++||++||+||||+|+|||+.+|. ++... ++...
T Consensus 199 ~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~~~~-~f~~~~~~~~ga~~~~~spy~ 277 (598)
T PRK10785 199 NPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVFNHTGDSHP-WFDRHNRGTGGACHHPDSPWR 277 (598)
T ss_pred CCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCCCCH-HHHHhhccccccccCCCCCcc
Confidence 344566788999 999999999999999999999999999999999999999999873 22111 12223
Q ss_pred ccccCCCCCCCCCCC----CCCCCCCCHHHHHHHHH----HHHHHHHH-hCCCeEEEcCcccccccCCCCCCCCCCCccc
Q psy9001 1075 CFFHDGPRGTHPLWD----SRLFNYSEIEVLRFLLS----NLRWYLEE-YQFDGFRFDGVTSMLYHNHGCGEGFSGHYDE 1145 (1351)
Q Consensus 1075 ~yf~~~~~g~~~~w~----~~dlN~~np~Vr~~lid----~l~yWl~e-ygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~ 1145 (1351)
.||.....+....|. ..+||++||+||++|++ +++||+++ |||||||+|+|..+....
T Consensus 278 dwf~~~~~~~~~~w~g~~~lPdLN~~np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDva~~v~~~~------------- 344 (598)
T PRK10785 278 DWYSFSDDGRALDWLGYASLPKLDFQSEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDVVHMLGEGG------------- 344 (598)
T ss_pred eeeEECCCCCcCCcCCCCcCccccCCCHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEecHhHhcccc-------------
Confidence 466544445455553 35899999999999995 79999997 999999999998763110
Q ss_pred ccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccccccccccccccccccccccccCchhHh
Q psy9001 1146 YFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKV 1225 (1351)
Q Consensus 1146 ~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd 1225 (1351)
.......||+++++.+++.+|++++|||.|.... .+.. |.+||..++- . .+...++.
T Consensus 345 -----~~~~~~~f~~~~~~~vk~~~pd~~ligE~~~~~~----~~l~-~~~~d~~mny---------~----~f~~~~~~ 401 (598)
T PRK10785 345 -----GARNNLQHVAGITQAAKEENPEAYVLGEHFGDAR----QWLQ-ADVEDAAMNY---------R----GFAFPLRA 401 (598)
T ss_pred -----CccccHHHHHHHHHHHHhhCCCeEEEEeccCChh----hhcc-Cccccccccc---------h----hhhhHHHH
Confidence 0123578999999999999999999999885422 1211 2222211110 0 01112233
Q ss_pred hhccCCCCCCCccccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCcccccccC--CHHHHHHHH
Q psy9001 1226 VLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYI--QTESNMNGF 1303 (1351)
Q Consensus 1226 ~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~--~~~~~r~A~ 1303 (1351)
.+...+..+ ..... .. ..+...........|...... .+||++|||+.|. ...+ ..+++|+|+
T Consensus 402 ~~~~~~~~~---~~~~~----~~--~~~~~~l~~~~~~~~~~~~~~-~~n~l~nHD~~R~-----~~~~~~~~~~~kla~ 466 (598)
T PRK10785 402 FLANTDIAY---HPQQI----DA--QTCAAWMDEYRAGLPHQQQLR-QFNQLDSHDTARF-----KTLLGGDKARMPLAL 466 (598)
T ss_pred Hhhcccccc---CccCC----CH--HHHHHHHHHHHHhCCHHHHHH-hhhccCCCccchh-----hhhhCCCHHHHHHHH
Confidence 331110000 00000 00 000000000000112211111 1699999999753 2222 346789999
Q ss_pred HHHHccCCccEEEee-cccCCCCccceeeccCCcce
Q psy9001 1304 GIQTLPTQSPLYLVA-KIEKPCSTREVVKAPLPFGV 1338 (1351)
Q Consensus 1304 allltspGiP~If~g-~~~~~~~~~~~~~~p~~~~~ 1338 (1351)
+++||+||+||||+| |+...+.....+|.||||.-
T Consensus 467 ~ll~t~pGiP~IYYGdE~G~~g~~dp~~R~~m~W~~ 502 (598)
T PRK10785 467 VWLFTWPGVPCIYYGDEVGLDGGNDPFCRKPFPWDE 502 (598)
T ss_pred HHHHhCCCCcEEEeeeeccccCCCCCCccCCcCCCc
Confidence 999999999999999 99999988899999999974
No 46
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=100.00 E-value=2.9e-35 Score=364.11 Aligned_cols=325 Identities=20% Similarity=0.225 Sum_probs=203.0
Q ss_pred CCceEEEeecCCcccCCCcccccccccccccceeccCCCcccccccccccccCC-ceEEEecCCCCCCCCcccccCccce
Q psy9001 889 ENLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDF-GKWELVLPPNPDGDFNNWNREEFAY 967 (1351)
Q Consensus 889 ~d~iIYE~HV~~~s~~~~~gty~~f~~~~lp~ik~lG~fn~~~~~~~~l~~lg~-giwel~ip~~~~g~~Y~~~~~~~~y 967 (1351)
+++||||++|+.|+..... ..|+|+++..++++|+++|+ +||...
T Consensus 4 ~~~viYqi~~~~f~d~~~~---------------~~Gdl~gi~~~Ldyl~~LGv~~i~L~P------------------- 49 (539)
T TIGR02456 4 KDAVFYEVHVRSFFDSNGD---------------GIGDFPGLTSKLDYLKWLGVDALWLLP------------------- 49 (539)
T ss_pred ccceEEEEehhHhhcCCCC---------------CccCHHHHHHhHHHHHHCCCCEEEECC-------------------
Confidence 5899999999999854321 13667777777777777665 344332
Q ss_pred ecCCccceeeecCCCCCCCccccccCcceeeecccCCCCCCCCCCc-ccccc-ccccccccCCCCCHHHHHHHHHHHHHc
Q psy9001 968 KKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRFGTP-EQLKY-LVDECHKAGLFGTPEQLKYLVDECHKA 1045 (1351)
Q Consensus 968 ~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp-~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~ 1045 (1351)
.+.++ .+||| +.||++|+|+|||.+|||+||++||++
T Consensus 50 -----------------------------------------i~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~ 88 (539)
T TIGR02456 50 -----------------------------------------FFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHAR 88 (539)
T ss_pred -----------------------------------------CcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHC
Confidence 22233 25899 999999999999999999999999999
Q ss_pred CCEEEEEeecccccCCcccc---CcCCCCCCCccccCCCC-------------CCCCCC----------------CCCCC
Q psy9001 1046 GLYVLLDVVHSHASKNVLDG---LNEFDGTQACFFHDGPR-------------GTHPLW----------------DSRLF 1093 (1351)
Q Consensus 1046 GI~VILDVV~NHts~~~~~~---l~~~dg~~~~yf~~~~~-------------g~~~~w----------------~~~dl 1093 (1351)
||+||||+|+||++.+|... +...++....||..... .....| +..+|
T Consensus 89 Gi~vilD~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdl 168 (539)
T TIGR02456 89 GMRVIIDLVLNHTSDQHPWFQEARSNPDGPYRDFYVWSDTDEKYKDTRIIFVDTEKSNWTFDPVAKQYYWHRFFSHQPDL 168 (539)
T ss_pred CCEEEEEeccCcCCCCCHHHHHHhhCCCCCCCceEEecCCCcccccccccccccCCCCccccCCcCeeEEecccCCCCcc
Confidence 99999999999999987321 11112222334431100 011223 13489
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCe
Q psy9001 1094 NYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEI 1173 (1351)
Q Consensus 1094 N~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ 1173 (1351)
|++||+||++|+++++||++ +||||||||++.+|.+...+.. ..-.+...||+++++.+++.+|++
T Consensus 169 n~~np~vr~~l~~~~~~w~~-~GvDGfRlDav~~~~~~~~~~~-------------~~~p~~~~f~~~~~~~v~~~~p~~ 234 (539)
T TIGR02456 169 NYDNPAVHDAVHDVMRFWLD-LGVDGFRLDAVPYLYEREGTSC-------------ENLPETHEFLKRLRKMVDREYPGR 234 (539)
T ss_pred CCCCHHHHHHHHHHHHHHHH-cCCCEEEEecHHhhhccCCCcc-------------CCCchHHHHHHHHHHHHHHhCCCe
Confidence 99999999999999999998 7999999999998853221100 011346889999999999999999
Q ss_pred EEEEccCCCCCCcccccccCCc-ccccccccccccccccccccccccCchhHhhhccCCCCCCCccccCCCcccccccCC
Q psy9001 1174 ITIAEDVSGMPASCRPVTEGGT-GFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEP 1252 (1351)
Q Consensus 1174 ilIaE~~~~~p~~~~p~~~gg~-GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~ 1252 (1351)
++|||.+.....+...+...+. +++..+ +|+.....+ ..+.. .....+... .
T Consensus 235 ~~iaE~~~~~~~~~~y~~~~~~~~~d~~f---------~f~l~~~~~-----~~l~~-----~~~~~l~~~----l---- 287 (539)
T TIGR02456 235 MLLAEANQWPEEVVAYFGDEGDPECHMAF---------NFPVMPRIF-----MALRR-----EDRSPIIDI----L---- 287 (539)
T ss_pred EEEEEeCCCHHHHHHhhCCCCCCeeeeEE---------Chhhhhhhh-----ccccc-----CCHHHHHHH----H----
Confidence 9999975322222222221111 333211 122110000 00000 000000000 0
Q ss_pred cccccCccccccCCCCccceeeecccCCCCCcCC--------------------------cccccccCC--HHHHHHHHH
Q psy9001 1253 WNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNN--------------------------ENNMKRYIQ--TESNMNGFG 1304 (1351)
Q Consensus 1253 ~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~--------------------------~~r~~~~~~--~~~~r~A~a 1304 (1351)
.+ ... .|... ..++|++|||+.+.. ..|+..... .+++++|++
T Consensus 288 --~~---~~~-~~~~~---~~~~fl~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~s~~~~~~~~~kla~~ 358 (539)
T TIGR02456 288 --KE---TPD-IPDSC---QWCIFLRNHDELTLEMVTDEERDFMYAAYAPDPRMRINLGIRRRLAPLLDNDRRRIELLTA 358 (539)
T ss_pred --HH---hhh-ccCCC---ceeeecCCCCccCccccChhhhhhhhhhccCCcchhcccchhhhhhhcccccHHHHHHHHH
Confidence 00 000 11111 115789999985420 023333332 357899999
Q ss_pred HHHccCCccEEEee-cccCCCC----ccceeeccCCcce
Q psy9001 1305 IQTLPTQSPLYLVA-KIEKPCS----TREVVKAPLPFGV 1338 (1351)
Q Consensus 1305 llltspGiP~If~g-~~~~~~~----~~~~~~~p~~~~~ 1338 (1351)
++||+||+|+||+| |+...+. .+..+|.||||.-
T Consensus 359 ~l~tlpG~P~IYYG~EiGm~~~~~~~~~~~~R~pm~W~~ 397 (539)
T TIGR02456 359 LLLSLPGSPILYYGDEIGMGDNIWLGDRNGVRTPMQWSP 397 (539)
T ss_pred HHHhCCCceEEEechhhcCcCCCccCCCcCccCCcCcCC
Confidence 99999999999999 7776642 3456789999974
No 47
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=100.00 E-value=4.2e-34 Score=353.40 Aligned_cols=165 Identities=22% Similarity=0.273 Sum_probs=118.6
Q ss_pred cccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCcccc---CcCCCCCCCcccc-CCCCCC-CCC-
Q psy9001 1015 QLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG---LNEFDGTQACFFH-DGPRGT-HPL- 1087 (1351)
Q Consensus 1015 ~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~---l~~~dg~~~~yf~-~~~~g~-~~~- 1087 (1351)
.+|| +.||+.|||+|||.+||++||++||++||+||||+|+|||+.+|... ... ++....||. .++.+. ..+
T Consensus 56 ~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v~NH~~~~~~~f~~~~~~-~~~y~~~y~~~~~~~~~~~~~ 134 (543)
T TIGR02403 56 DNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMVFNHTSTEHEWFKKALAG-DSPYRDFYIWRDPKGKPPTNW 134 (543)
T ss_pred CCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEECccccccchHHHHHhhcC-CCcccCceEecCCCCCCCCcc
Confidence 4689 89999999999999999999999999999999999999999988321 112 333334442 111111 111
Q ss_pred --------C----------------CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCc
Q psy9001 1088 --------W----------------DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHY 1143 (1351)
Q Consensus 1088 --------w----------------~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~ 1143 (1351)
| +..+||++||+||++|+++++||++ +||||||||+|.+|.+.......... -
T Consensus 135 ~~~~~~~~w~~~~~~~~~y~~~f~~~~pdln~~np~v~~~i~~~~~~W~~-~giDGfRlDa~~~i~~~~~~~~~~~~--~ 211 (543)
T TIGR02403 135 QSKFGGSAWEYFGDTGQYYLHLFDKTQADLNWENPEVREELKDVVNFWRD-KGVDGFRLDVINLISKDQFFEDDEIG--D 211 (543)
T ss_pred cccCCCcCccccCCCCceEEeccCCcCCccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEeeehhhccCcccCCCCCC--C
Confidence 2 1348999999999999999999997 59999999999998543211110000 0
Q ss_pred ccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCC
Q psy9001 1144 DEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPA 1185 (1351)
Q Consensus 1144 ~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~ 1185 (1351)
...|- .+......||+++++.++. .|++++|||.|...+.
T Consensus 212 ~~~~~-~~~~~~~~f~~~~~~~~~~-~~~~~lvgE~~~~~~~ 251 (543)
T TIGR02403 212 GRRFY-TDGPRVHEYLQEMNQEVFG-DNDSVTVGEMSSTTIE 251 (543)
T ss_pred Ccccc-CCChHHHHHHHHHHHHhhc-cCCeEEEEEeCCCCHH
Confidence 00010 1234578899999999988 8999999999865443
No 48
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=100.00 E-value=1.3e-31 Score=327.77 Aligned_cols=188 Identities=21% Similarity=0.328 Sum_probs=135.5
Q ss_pred CCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccchh
Q psy9001 196 ASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKE 275 (1351)
Q Consensus 196 G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e 275 (1351)
-+|++|+++ ||||++||||+ |||+|+|+ . + | ...+|||++.|||
T Consensus 19 ~~~~~I~~k-ldyl~~LGvta----Iwl~P~~~--------------------~--~---~-~~~~hgY~~~D~~----- 62 (479)
T PRK09441 19 KLWNRLAER-APELAEAGITA----VWLPPAYK--------------------G--T---S-GGYDVGYGVYDLF----- 62 (479)
T ss_pred cHHHHHHHH-HHHHHHcCCCE----EEeCCCcc--------------------C--C---C-CCCCCCCCeeccc-----
Confidence 467899999 99999999999 99999553 2 1 0 1345999999999
Q ss_pred hhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCc--CCc
Q psy9001 276 MYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVL--DGL 353 (1351)
Q Consensus 276 ~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~--~~~ 353 (1351)
... .|... -.|||+|||.+|||+||++||++||+||||+|+||++.... +..
T Consensus 63 ----------------~~~-~~~~~---------~~id~~fGt~~dl~~Li~~~H~~Gi~vi~D~V~NH~~~~~~~~~~~ 116 (479)
T PRK09441 63 ----------------DLG-EFDQK---------GTVRTKYGTKEELLNAIDALHENGIKVYADVVLNHKAGADEKETFR 116 (479)
T ss_pred ----------------ccc-ccccc---------CCcCcCcCCHHHHHHHHHHHHHCCCEEEEEECcccccCCCcceeee
Confidence 222 00000 03669999999999999999999999999999999985422 110
Q ss_pred ----------------------ccC--CCCCC-------cCcccCCC---------------CCCCCCC-----------
Q psy9001 354 ----------------------NEF--DGTQA-------CFFHDGPR---------------GTHPLWD----------- 376 (1351)
Q Consensus 354 ----------------------~~f--~g~~~-------~yy~~~~~---------------~~~~~w~----------- 376 (1351)
..| .+..+ .|++..+. +....|.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 196 (479)
T PRK09441 117 VVEVDPDDRTQIISEPYEIEGWTRFTFPGRGGKYSDFKWHWYHFSGTDYDENPDESGIFKIVGDGKGWDDQVDDENGNFD 196 (479)
T ss_pred eeeeCccccccccCCceeecccccccCCCCCCcCCcceeCCcCCCCcccccccCcCceEEecCCCCCCccccccccCCcc
Confidence 000 11100 12211110 0112342
Q ss_pred ---CccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHH
Q psy9001 377 ---SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFL 453 (1351)
Q Consensus 377 ---~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v 453 (1351)
.++||++||+|+++|++++++|++++||||||+|+|.+| ...||+.+.+.+
T Consensus 197 ~~~lpDLn~~np~V~~~l~~~~~~w~~~~giDGfRlDavk~v--------------------------~~~f~~~~~~~~ 250 (479)
T PRK09441 197 YLMGADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVKHI--------------------------DAWFIKEWIEHV 250 (479)
T ss_pred cccccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCC--------------------------CHHHHHHHHHHH
Confidence 358999999999999999999999999999999999988 235778888887
Q ss_pred HhhC-CCeEEEEEcCCCCC
Q psy9001 454 HDKY-PEIITIAEDVSGMP 471 (1351)
Q Consensus 454 ~~~~-P~~~~iaE~~~~~p 471 (1351)
++.. |+++++||.|.+.|
T Consensus 251 ~~~~~~~~~~vGE~~~~~~ 269 (479)
T PRK09441 251 REVAGKDLFIVGEYWSHDV 269 (479)
T ss_pred HHhcCCCeEEEEeecCCCh
Confidence 7665 68888888876654
No 49
>PRK09505 malS alpha-amylase; Reviewed
Probab=100.00 E-value=5.2e-32 Score=337.63 Aligned_cols=312 Identities=15% Similarity=0.175 Sum_probs=186.3
Q ss_pred CCCCCCCceEEEEecCCccCCC------------C--------CCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccc
Q psy9001 172 KPKKPDNLKIYESHVGICTQEQ------------K--------CASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDED 231 (1351)
Q Consensus 172 ~p~~~~~~vIYE~hvr~ft~~~------------~--------~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~ 231 (1351)
.|..|++.+||++.+..|...+ . -|+|+||+++ ||||++||||+ |||+|||+..
T Consensus 183 ~~~~W~~aviYqI~~DRF~nGd~~Nd~~~g~~~d~~~~~~~f~GGdl~Gi~~k-Ldyl~~LGv~a----IwlsPi~~~~- 256 (683)
T PRK09505 183 APFDWHNATVYFVLTDRFENGDPSNDHSYGRHKDGMQEIGTFHGGDLRGLTEK-LDYLQQLGVNA----LWISSPLEQI- 256 (683)
T ss_pred CChhhccCcEEEEehhhhcCCCcccccccCcCCCCccccCcccCCCHHHHHHh-hHHHHHcCCCE----EEeCcccccc-
Confidence 3457899999999999994211 1 2899999999 99999999999 9999977410
Q ss_pred cCccceEEEccccccccccccccCCC-CccccCcccccccccchhhhcccccCCCCchhcccccccCCCCcccccccccc
Q psy9001 232 WNMGNIVHTLTNRRYMEKTVAYAESH-DQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDEC 310 (1351)
Q Consensus 232 ~~~~~ii~~~~~~~~~e~~~~~~~s~-~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~ 310 (1351)
+.. +. . ...++. ...++||++.||+ .++
T Consensus 257 -------~~~----~~-~--g~~g~~~~~~yhgY~~~D~~---------------------~id---------------- 285 (683)
T PRK09505 257 -------HGW----VG-G--GTKGDFPHYAYHGYYTLDWT---------------------KLD---------------- 285 (683)
T ss_pred -------ccc----cc-c--ccccCCCcCCCCCCCccccc---------------------cCC----------------
Confidence 000 00 0 001110 1245788887777 555
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCC-----cCCccc-C-------CCCCCcC----------cc--
Q psy9001 311 HKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNV-----LDGLNE-F-------DGTQACF----------FH-- 365 (1351)
Q Consensus 311 ~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~-----~~~~~~-f-------~g~~~~y----------y~-- 365 (1351)
++||+.+|||+||++||++||+||||+|+||++... .+.... + .+....| ++
T Consensus 286 ---~~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~~~~d~~~~~f~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 362 (683)
T PRK09505 286 ---ANMGTEADLRTLVDEAHQRGIRILFDVVMNHTGYATLADMQEFQFGALYLSGDENKKTLGERWSDWQPAAGQNWHSF 362 (683)
T ss_pred ---CCCCCHHHHHHHHHHHHHCCCEEEEEECcCCCcccccccccccchhhhhhhccccccccCccccccccccccccccc
Confidence 999999999999999999999999999999999431 000000 0 0000111 00
Q ss_pred -----cCCCCCCCCC-C-------------------------CccCCCC-----------------------CHHHHHHH
Q psy9001 366 -----DGPRGTHPLW-D-------------------------SRLFNYS-----------------------EIEVLRFL 391 (1351)
Q Consensus 366 -----~~~~~~~~~w-~-------------------------~~~ln~~-----------------------~p~v~~~l 391 (1351)
.........| + -++||++ ||+||++|
T Consensus 363 ~~~~~~~~~~~~~~wwg~~w~~~~~~~~~~~~~~~~~~~l~~LPdl~te~~~~~~lp~f~~~~p~~~~~~~~n~~Vr~yL 442 (683)
T PRK09505 363 NDYINFSDSTAWDKWWGKDWIRTDIGDYDNPGFDDLTMSLAFLPDIKTESTQASGLPVFYANKPDTRAKAIDGYTPRDYL 442 (683)
T ss_pred ccccccCCccccccccccccccccccccccccccccccccccCCcccccCccccccchhhhcCcccccccccCHHHHHHH
Confidence 0000111111 1 1234443 56999999
Q ss_pred HHHHHHHHHHcCCCccccccccccccc-------------------c----------CCCCCCCCCCc--cccCC----C
Q psy9001 392 LSNLRWYLDEYQFDGFRFDGVTSMLYH-------------------N----------HGCGEGFSGHY--DEYFG----L 436 (1351)
Q Consensus 392 ~~~l~~W~~e~~vDGfR~D~a~~~~~~-------------------~----------~~~~~~f~~~~--~~~~~----~ 436 (1351)
++++++|++++||||||+|+|.+|-.. . .-+++-|.... ..+++ .
T Consensus 443 ~~~ik~Wv~e~GIDGfRlDaakhV~~~FW~~~~~~~~~~l~~~k~~~~d~~~~~~~~~~vGEvw~~~~~~~~y~~~~fDs 522 (683)
T PRK09505 443 THWLSQWVRDYGIDGFRVDTAKHVELPAWQQLKQEASAALAEWKKANPDKALDDAPFWMTGEAWGHGVMKSDYYRHGFDA 522 (683)
T ss_pred HHHHHHHHHhcCCCEEEEechHhCCHHHHHHHHHHHHHHHHHHHHhccccccccCCeEEEEEecCCchhhHHHHhhcCcc
Confidence 999999999999999999999988310 0 00112221110 01111 1
Q ss_pred ccCch-------HHHHHHHHHHH---HHhhCCCeEEE---------------EEc------------CCCCCCccccccc
Q psy9001 437 NVDTD-------ALIYLMVANKF---LHDKYPEIITI---------------AED------------VSGMPASCRPVTE 479 (1351)
Q Consensus 437 ~~~~~-------~~~f~~~~~~~---v~~~~P~~~~i---------------aE~------------~~~~p~~~~~~~~ 479 (1351)
-.|.+ ....+..+... +....++..++ .+. .+|.|.|+++.|.
T Consensus 523 v~NF~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~FLdNHDt~Rf~s~~~~~~~~klAaall~tlpGiP~IYYGdEi 602 (683)
T PRK09505 523 MINFDYQEQAAKAVDCLAQMDPTYQQMAEKLQDFNVLSYLSSHDTRLFFEGGQSYAKQRRAAELLLLAPGAVQIYYGDES 602 (683)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHhhhcCccceeecccCCChhhhhhhcCchHHHHHHHHHHHhCCCCcEEEechhh
Confidence 11110 00111111111 11111111111 110 1699999999998
Q ss_pred CCCC----CC----CcCC--cCC-CCCCCcHHHHHHHHHHhhhcccccccCCcceEeecCCCcEEEEEeC----ceEEEE
Q psy9001 480 GGTG----FD----YRLE--IRP-DMSDMTVGTFDAAMNTTEERFKWLSADPGYVSTKHEGDKVIIFERA----GLLFAF 544 (1351)
Q Consensus 480 gg~g----fd----~~~~--~~~-d~~~~sl~~f~k~L~~Lr~~~~~L~~g~~~~~~~~~~~~Vlaf~R~----~ll~v~ 544 (1351)
|-.| -| .|-. |.. .....+|++|+|+|++||+++|+|+.|. +..+. .+++++|.|. .+|||+
T Consensus 603 Gm~gg~~g~DP~~~~R~~M~W~~~~~~~~~Ll~~~kkLi~LRk~~pAL~~G~-~~~l~--~~~~~aF~R~~~~d~vlVv~ 679 (683)
T PRK09505 603 ARPFGPTGSDPLQGTRSDMNWQEVSGKSAALLAHWQKLGQFRARHPAIGAGK-QTTLS--LKQYYAFVREHGDDKVMVVW 679 (683)
T ss_pred CccCCCCCCCCcccccccCCccccccchHHHHHHHHHHHHHHhhCHHhhCCc-eEEec--cCCEEEEEEEeCCCEEEEEE
Confidence 7322 12 2222 432 1134579999999999999999999984 34332 4579999995 799998
Q ss_pred eC
Q psy9001 545 NF 546 (1351)
Q Consensus 545 Nf 546 (1351)
|=
T Consensus 680 ~~ 681 (683)
T PRK09505 680 AG 681 (683)
T ss_pred eC
Confidence 83
No 50
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=99.98 E-value=2.8e-32 Score=336.91 Aligned_cols=162 Identities=20% Similarity=0.282 Sum_probs=113.5
Q ss_pred cccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCC--CCCCCcccc--CC-----CCCC
Q psy9001 1015 QLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF--DGTQACFFH--DG-----PRGT 1084 (1351)
Q Consensus 1015 ~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~--dg~~~~yf~--~~-----~~g~ 1084 (1351)
.||| +.||+.|||+|||.+|||+||++||++||+||||+|+||++..|....... +.....||. .+ +...
T Consensus 62 ~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V~NH~s~~~~wf~~~~~~~~~y~d~y~~~~~~~~~~~~~~ 141 (551)
T PRK10933 62 DNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRDGEPETPPNNW 141 (551)
T ss_pred CCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCccCchhHHHhhcCCCCCCcCceEecCCCCCCCCCcc
Confidence 5789 899999999999999999999999999999999999999999874321111 112223332 11 0000
Q ss_pred C-----CC--C--------------CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCc
Q psy9001 1085 H-----PL--W--------------DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHY 1143 (1351)
Q Consensus 1085 ~-----~~--w--------------~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~ 1143 (1351)
. +. | +..+||++||+||++|+++++||++ +||||||||+|.+|.+.. +|+...
T Consensus 142 ~~~~~~~~w~~~~~~~~~y~~~f~~~~pdLn~~np~V~~~l~~~~~~W~~-~GvDGfRlDa~~~i~~~~-----~~~~~~ 215 (551)
T PRK10933 142 RSKFGGSAWRWHAESEQYYLHLFAPEQADLNWENPAVRAELKKVCEFWAD-RGVDGLRLDVVNLISKDQ-----DFPDDL 215 (551)
T ss_pred cccCCCccccccCCCCceEeecccccCCccCCCCHHHHHHHHHHHHHHHH-CCCcEEEEcchhhcCcCC-----CCCCCc
Confidence 0 01 1 1348999999999999999999995 799999999999996431 121100
Q ss_pred ---ccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCC
Q psy9001 1144 ---DEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMP 1184 (1351)
Q Consensus 1144 ---~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p 1184 (1351)
...|. ....+...||+++++.+.+ .+++++|||.|...+
T Consensus 216 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~-~~~~~~vgE~~~~~~ 257 (551)
T PRK10933 216 DGDGRRFY-TDGPRAHEFLQEMNRDVFT-PRGLMTVGEMSSTSL 257 (551)
T ss_pred cccccccc-CCChHHHHHHHHHHHHhhc-ccCcEEEEeecCCCH
Confidence 00010 1234577899999887643 347899999886443
No 51
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=99.98 E-value=2.1e-33 Score=321.58 Aligned_cols=252 Identities=25% Similarity=0.330 Sum_probs=159.4
Q ss_pred ccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCcccc---CcCCCCCCCccccC-----CCCC-
Q psy9001 1014 EQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG---LNEFDGTQACFFHD-----GPRG- 1083 (1351)
Q Consensus 1014 ~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~---l~~~dg~~~~yf~~-----~~~g- 1083 (1351)
.+||| ++||++|||+|||.+|||+||++||++||+||||+|+||++..+... ....+.....||.. .+.+
T Consensus 32 ~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (316)
T PF00128_consen 32 GYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNHTSDDHPWFQDSLNYFDNPYSDYYYWRDGEGSPPGN 111 (316)
T ss_dssp STTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEETTSHHHHHHHTHTTSTTGTTBEEESBTSTTSST
T ss_pred ccccccceeeeccccccchhhhhhhhhhccccccceEEEeeeccccccccccccccccccccccccceeecccccccccc
Confidence 57899 89999999999999999999999999999999999999999998431 22222223333320 0110
Q ss_pred -----CCCCC-------------CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCccc
Q psy9001 1084 -----THPLW-------------DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDE 1145 (1351)
Q Consensus 1084 -----~~~~w-------------~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~ 1145 (1351)
....| +..+||++||+||++|+++++||+++ +|||||||++.+|
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~i~~~~~~w~~~-giDGfR~D~~~~~----------------- 173 (316)
T PF00128_consen 112 WYSYFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVREYIIDVLKFWIEE-GIDGFRLDAAKHI----------------- 173 (316)
T ss_dssp BBCSTTTSSEESCHHTHCHSSSTTSEEBETTSHHHHHHHHHHHHHHHHT-TESEEEETTGGGS-----------------
T ss_pred cccccccccccccccccccccccccchhhhhhhhhhhhhcccccchhhc-eEeEEEEcccccc-----------------
Confidence 01112 23489999999999999999999986 6999999999988
Q ss_pred ccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccc-cCCcccccccccccccccccccccccccCchhH
Q psy9001 1146 YFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVT-EGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYK 1224 (1351)
Q Consensus 1146 ~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~-~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~r 1224 (1351)
...+|+++++++++..|++++|||.+.+......... .+.. ++. . ...++.. ...
T Consensus 174 ---------~~~~~~~~~~~~~~~~~~~~~i~E~~~~~~~~~~~~~~~~~~--~~~--~-----~~~~~~~------~~~ 229 (316)
T PF00128_consen 174 ---------PKEFWKEFRDEVKEEKPDFFLIGEVWGGDNEDLRQYAYDGYF--DLD--S-----VFDFPDY------GLR 229 (316)
T ss_dssp ---------SHHHHHHHHHHHHHHHTTSEEEEEESSSSHHHHHHHHHHGTT--SHS--E-----EEHHHHH------HHH
T ss_pred ---------chhhHHHHhhhhhhhccccceeeeeccCCccccchhhhcccc--ccc--h-----hhccccc------ccc
Confidence 3488899999999999999999999866543222111 1110 000 0 0001100 000
Q ss_pred hhhccCCCCCCCccccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCcccccccCCHH-HHHHHH
Q psy9001 1225 VVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYIQTE-SNMNGF 1303 (1351)
Q Consensus 1225 d~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~~~~-~~r~A~ 1303 (1351)
..+. .+.+.......... ..........+. ....++|++|||+.|. ........ ++++|+
T Consensus 230 ~~~~-------~~~~~~~~~~~~~~-----~~~~~~~~~~~~---~~~~~~f~~nHD~~r~----~~~~~~~~~~~~~a~ 290 (316)
T PF00128_consen 230 SSFF-------DFWRHGDGDASDLA-----NWLSSWQSSYPD---PYRAVNFLENHDTPRF----ASRFGNNRDRLKLAL 290 (316)
T ss_dssp HHHH-------HHHTTTSSHHHHHH-----HHHHHHHHHSTT---GGGEEEESSHTTSSTH----HHHTTTHHHHHHHHH
T ss_pred cchh-------hhhccccchhhhhh-----hhhhhhhhhhcc---cceeeecccccccccc----hhhhcccchHHHHHH
Confidence 0000 00000000000000 000000011111 1122899999999862 22333343 799999
Q ss_pred HHHHccCCccEEEee-cccCCCCc
Q psy9001 1304 GIQTLPTQSPLYLVA-KIEKPCST 1326 (1351)
Q Consensus 1304 allltspGiP~If~g-~~~~~~~~ 1326 (1351)
+++||+||+||||+| |+...+..
T Consensus 291 ~~ll~~pG~P~iy~G~E~g~~~~~ 314 (316)
T PF00128_consen 291 AFLLTSPGIPMIYYGDEIGMTGSK 314 (316)
T ss_dssp HHHHHSSSEEEEETTGGGTBBTSS
T ss_pred HHHHcCCCccEEEeChhccCCCCC
Confidence 999999999999999 77666554
No 52
>PRK09505 malS alpha-amylase; Reviewed
Probab=99.97 E-value=6.9e-32 Score=336.55 Aligned_cols=334 Identities=16% Similarity=0.164 Sum_probs=193.8
Q ss_pred CCceEEEeecCCcccCC--Cccccccccc-ccccceeccCCCcccccccccccccCC-ceEEEecCCCCCCCCcccccCc
Q psy9001 889 ENLKIYESHVGICTQEQ--KCASYEDFVR-VVIPRIVKQGDFNNWNREEFAYKKLDF-GKWELVLPPNPDGDFNNWNREE 964 (1351)
Q Consensus 889 ~d~iIYE~HV~~~s~~~--~~gty~~f~~-~~lp~ik~lG~fn~~~~~~~~l~~lg~-giwel~ip~~~~g~~Y~~~~~~ 964 (1351)
.+++||++-+.-|.... +...|..--. .--+.--.-|||+++..++++|+.+|+ +||...|-...
T Consensus 188 ~~aviYqI~~DRF~nGd~~Nd~~~g~~~d~~~~~~~f~GGdl~Gi~~kLdyl~~LGv~aIwlsPi~~~~----------- 256 (683)
T PRK09505 188 HNATVYFVLTDRFENGDPSNDHSYGRHKDGMQEIGTFHGGDLRGLTEKLDYLQQLGVNALWISSPLEQI----------- 256 (683)
T ss_pred ccCcEEEEehhhhcCCCcccccccCcCCCCccccCcccCCCHHHHHHhhHHHHHcCCCEEEeCcccccc-----------
Confidence 67889999998885321 1111110000 000011123788999999999999986 46654430000
Q ss_pred cceecCCccceeeecCCCCCCCccccccCcceeeecccCCCCCCCCCCcccccc-ccccccccCCCCCHHHHHHHHHHHH
Q psy9001 965 FAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECH 1043 (1351)
Q Consensus 965 ~~y~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH 1043 (1351)
.|. .+. |. ...+.+.++||| +.||+.|||+|||.+|||+||++||
T Consensus 257 -------~~~----~~~----------------------g~-~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH 302 (683)
T PRK09505 257 -------HGW----VGG----------------------GT-KGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAH 302 (683)
T ss_pred -------ccc----ccc----------------------cc-ccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHH
Confidence 000 000 00 011223468999 9999999999999999999999999
Q ss_pred HcCCEEEEEeecccccCCccc-----cCcC--------CCCCCCc---cc-------c-------C-CCCCCCCCCC---
Q psy9001 1044 KAGLYVLLDVVHSHASKNVLD-----GLNE--------FDGTQAC---FF-------H-------D-GPRGTHPLWD--- 1089 (1351)
Q Consensus 1044 ~~GI~VILDVV~NHts~~~~~-----~l~~--------~dg~~~~---yf-------~-------~-~~~g~~~~w~--- 1089 (1351)
++||+||||+|+||++..+.. ++.. -...... |+ + . +......+|+
T Consensus 303 ~~Gi~VilD~V~NH~~~~~~~d~~~~~f~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~wwg~~w 382 (683)
T PRK09505 303 QRGIRILFDVVMNHTGYATLADMQEFQFGALYLSGDENKKTLGERWSDWQPAAGQNWHSFNDYINFSDSTAWDKWWGKDW 382 (683)
T ss_pred HCCCEEEEEECcCCCcccccccccccchhhhhhhccccccccCcccccccccccccccccccccccCCcccccccccccc
Confidence 999999999999999953210 1100 0000001 11 0 0 0001111111
Q ss_pred ----------------------CCCCCCC-----------------------CHHHHHHHHHHHHHHHHHhCCCeEEEcC
Q psy9001 1090 ----------------------SRLFNYS-----------------------EIEVLRFLLSNLRWYLEEYQFDGFRFDG 1124 (1351)
Q Consensus 1090 ----------------------~~dlN~~-----------------------np~Vr~~lid~l~yWl~eygVDGFRfD~ 1124 (1351)
..+||.+ ||+||++|+++++||+++|||||||+|+
T Consensus 383 ~~~~~~~~~~~~~~~~~~~l~~LPdl~te~~~~~~lp~f~~~~p~~~~~~~~n~~Vr~yL~~~ik~Wv~e~GIDGfRlDa 462 (683)
T PRK09505 383 IRTDIGDYDNPGFDDLTMSLAFLPDIKTESTQASGLPVFYANKPDTRAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVDT 462 (683)
T ss_pred ccccccccccccccccccccccCCcccccCccccccchhhhcCcccccccccCHHHHHHHHHHHHHHHHhcCCCEEEEec
Confidence 1244444 5699999999999999999999999999
Q ss_pred cccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHH-------HhhCC-------CeEEEEccCCCCCCccccc
Q psy9001 1125 VTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFL-------HDKYP-------EIITIAEDVSGMPASCRPV 1190 (1351)
Q Consensus 1125 a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l-------~~~~P-------d~ilIaE~~~~~p~~~~p~ 1190 (1351)
|.++ ...||++++..+ ++.+| +++||||.|...+......
T Consensus 463 akhV--------------------------~~~FW~~~~~~~~~~l~~~k~~~~d~~~~~~~~~~vGEvw~~~~~~~~y~ 516 (683)
T PRK09505 463 AKHV--------------------------ELPAWQQLKQEASAALAEWKKANPDKALDDAPFWMTGEAWGHGVMKSDYY 516 (683)
T ss_pred hHhC--------------------------CHHHHHHHHHHHHHHHHHHHHhccccccccCCeEEEEEecCCchhhHHHH
Confidence 9988 345666665555 34455 4899999996544332222
Q ss_pred ccCCcccccccccccccccccccccccccCchhHhhhccCCCCCCCccccCCCcccccccCCcccccCccccccCCCCcc
Q psy9001 1191 TEGGTGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGI 1270 (1351)
Q Consensus 1191 ~~gg~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~ 1270 (1351)
. .+||.. ++|+.. .....++ ..+.++... +..... ...+ .
T Consensus 517 ~---~~fDsv---------~NF~~~-----~~~~~~~-------~~~~~l~~~---------~~~~~~---~~~~----~ 556 (683)
T PRK09505 517 R---HGFDAM---------INFDYQ-----EQAAKAV-------DCLAQMDPT---------YQQMAE---KLQD----F 556 (683)
T ss_pred h---hcCccc---------cCchHH-----HHHHHHH-------HHHHHHHHH---------HHHHhh---hcCc----c
Confidence 1 234422 222211 0011111 000111000 000000 0001 1
Q ss_pred ceeeecccCCCCCcCCcccccccCCHHHHHHHHHHHHccCCccEEEee-cccCCCCc---c--ceeeccCCcce
Q psy9001 1271 IDEVNLLNNVREERNNENNMKRYIQTESNMNGFGIQTLPTQSPLYLVA-KIEKPCST---R--EVVKAPLPFGV 1338 (1351)
Q Consensus 1271 ~~~vnfv~nHD~~rn~~~r~~~~~~~~~~r~A~allltspGiP~If~g-~~~~~~~~---~--~~~~~p~~~~~ 1338 (1351)
..++|++|||+.|... + .....++|+|++++||+||+|+||.| |+...+.. . ..+|.||||+-
T Consensus 557 -~~l~FLdNHDt~Rf~s-~---~~~~~~~klAaall~tlpGiP~IYYGdEiGm~gg~~g~DP~~~~R~~M~W~~ 625 (683)
T PRK09505 557 -NVLSYLSSHDTRLFFE-G---GQSYAKQRRAAELLLLAPGAVQIYYGDESARPFGPTGSDPLQGTRSDMNWQE 625 (683)
T ss_pred -ceeecccCCChhhhhh-h---cCchHHHHHHHHHHHhCCCCcEEEechhhCccCCCCCCCCcccccccCCccc
Confidence 1178999999976421 1 11225789999999999999999999 88876632 2 24899999974
No 53
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=99.97 E-value=1.3e-30 Score=318.78 Aligned_cols=238 Identities=18% Similarity=0.233 Sum_probs=155.9
Q ss_pred ccccc-ccccc---------cccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCcc-ccCc---------------
Q psy9001 1014 EQLKY-LVDEC---------HKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVL-DGLN--------------- 1067 (1351)
Q Consensus 1014 ~~hgY-~~Dy~---------~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~-~~l~--------------- 1067 (1351)
.+||| +.||| .|||+|||.+|||+||++||++||+||||+|+||++.... .++.
T Consensus 52 ~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi~D~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (479)
T PRK09441 52 YDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYADVVLNHKAGADEKETFRVVEVDPDDRTQIISE 131 (479)
T ss_pred CCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEEEEECcccccCCCcceeeeeeeeCccccccccCC
Confidence 46999 99999 7999999999999999999999999999999999996432 1110
Q ss_pred --------CCC--C---CC----CccccCCCC---------------CCCCCCC--------------CCCCCCCCHHHH
Q psy9001 1068 --------EFD--G---TQ----ACFFHDGPR---------------GTHPLWD--------------SRLFNYSEIEVL 1101 (1351)
Q Consensus 1068 --------~~d--g---~~----~~yf~~~~~---------------g~~~~w~--------------~~dlN~~np~Vr 1101 (1351)
.+. + .. ..|++..+. +....|. ..|||++||+||
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~lpDLn~~np~V~ 211 (479)
T PRK09441 132 PYEIEGWTRFTFPGRGGKYSDFKWHWYHFSGTDYDENPDESGIFKIVGDGKGWDDQVDDENGNFDYLMGADIDFRHPEVR 211 (479)
T ss_pred ceeecccccccCCCCCCcCCcceeCCcCCCCcccccccCcCceEEecCCCCCCccccccccCCcccccccccccCCHHHH
Confidence 000 0 00 012221110 0012232 348999999999
Q ss_pred HHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhC-CCeEEEEccC
Q psy9001 1102 RFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKY-PEIITIAEDV 1180 (1351)
Q Consensus 1102 ~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~-Pd~ilIaE~~ 1180 (1351)
++|+++++||++++||||||+|+|.+| ...||+.+++.+++.. |++++|||.|
T Consensus 212 ~~l~~~~~~w~~~~giDGfRlDavk~v--------------------------~~~f~~~~~~~~~~~~~~~~~~vGE~~ 265 (479)
T PRK09441 212 EELKYWAKWYMETTGFDGFRLDAVKHI--------------------------DAWFIKEWIEHVREVAGKDLFIVGEYW 265 (479)
T ss_pred HHHHHHHHHHHHhcCCCEEEEhhhcCC--------------------------CHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 999999999999999999999999988 3568899999998766 6999999999
Q ss_pred CCCCCcccccccCC----cccccccccccccccccccccccccCchhHhhhccCCCCCCCccccCCCcccccccCCcccc
Q psy9001 1181 SGMPASCRPVTEGG----TGFDYRLGQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNR 1256 (1351)
Q Consensus 1181 ~~~p~~~~p~~~gg----~GFdy~~~~~~h~~~~~f~~~~~e~n~~~rd~l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r 1256 (1351)
.+.+.....+..+. ..|| |+.. ..+++++... ....+..-+ .
T Consensus 266 ~~~~~~~~~y~~~~~~~~~~~D-------------f~~~-----~~l~~~~~~~-----~~~~l~~~~----~------- 311 (479)
T PRK09441 266 SHDVDKLQDYLEQVEGKTDLFD-------------VPLH-----YNFHEASKQG-----RDYDMRNIF----D------- 311 (479)
T ss_pred CCChHHHHHHHHhcCCCceEec-------------HHHH-----HHHHHHHhcC-----CccchHhhh----C-------
Confidence 87765444333221 1233 3322 3345555211 000000000 0
Q ss_pred cCccccccCCCCccceeeecccCCCCCcCCcccccccCCHHHHHHHHHHHHccC-CccEEEeec
Q psy9001 1257 RNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYIQTESNMNGFGIQTLPT-QSPLYLVAK 1319 (1351)
Q Consensus 1257 ~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~~~~~~r~A~allltsp-GiP~If~g~ 1319 (1351)
.......|.. .+||++|||+.|.... .. .......++|++++||+| |+|+||.|+
T Consensus 312 -~~~~~~~~~~-----~~~FldNHD~~R~~~~-~~-~~~~~~~~lA~a~llT~p~GiP~IYYGd 367 (479)
T PRK09441 312 -GTLVEADPFH-----AVTFVDNHDTQPGQAL-ES-PVEPWFKPLAYALILLREEGYPCVFYGD 367 (479)
T ss_pred -cchhhcCccc-----ceeeeccccCCCcccc-cc-cccccchHHHHHHHHhCCCCceeeEecc
Confidence 0000011222 2899999999875221 10 011123579999999999 999999994
No 54
>PLN00196 alpha-amylase; Provisional
Probab=99.96 E-value=1.5e-28 Score=294.12 Aligned_cols=141 Identities=22% Similarity=0.286 Sum_probs=104.5
Q ss_pred Ccccccc-cccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCc---CCCC-C---CCccccC---
Q psy9001 1012 TPEQLKY-LVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLN---EFDG-T---QACFFHD--- 1079 (1351)
Q Consensus 1012 sp~~hgY-~~Dy~~id-p~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~---~~dg-~---~~~yf~~--- 1079 (1351)
+.++||| +.|||.++ ++|||.+|||+||++||++||+||||+|+||++.++.+... .+.+ . ...||..
T Consensus 69 s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH~~~~~~~~~~~y~~~~~~~~~~~~~w~~~~~~ 148 (428)
T PLN00196 69 SVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRTAEHKDGRGIYCLFEGGTPDSRLDWGPHMIC 148 (428)
T ss_pred CCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccCcccccccCCCceEECCCCCCCCccccccccCC
Confidence 3457999 88999999 69999999999999999999999999999999987643211 1111 1 1223311
Q ss_pred -C------CCCCC-CCC---CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccC
Q psy9001 1080 -G------PRGTH-PLW---DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 1148 (1351)
Q Consensus 1080 -~------~~g~~-~~w---~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g 1148 (1351)
+ ..+.. .++ ...+||++||+||++|+++++||++++||||||||+|+++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~wl~~~~GiDG~RlD~ak~~-------------------- 208 (428)
T PLN00196 149 RDDTQYSDGTGNLDTGADFAAAPDIDHLNKRVQRELIGWLLWLKSDIGFDAWRLDFAKGY-------------------- 208 (428)
T ss_pred CCcccccCCCCceeCCCCCCCCCccCCCCHHHHHHHHHHHHHHhhCCCCCEEEeehhhhC--------------------
Confidence 0 00111 111 2458999999999999999999999999999999999988
Q ss_pred CcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCC
Q psy9001 1149 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSG 1182 (1351)
Q Consensus 1149 ~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~ 1182 (1351)
+..|+++ .+++.+| .++|||.|.+
T Consensus 209 ------~~~f~~~---~v~~~~p-~f~VGE~W~~ 232 (428)
T PLN00196 209 ------SAEVAKV---YIDGTEP-SFAVAEIWTS 232 (428)
T ss_pred ------CHHHHHH---HHHccCC-cEEEEEEecc
Confidence 2345444 3555667 7899999965
No 55
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=99.96 E-value=4.5e-29 Score=285.78 Aligned_cols=177 Identities=24% Similarity=0.375 Sum_probs=140.8
Q ss_pred CCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccchh
Q psy9001 196 ASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKE 275 (1351)
Q Consensus 196 G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e 275 (1351)
|||+||+++ |||||+||||+ |||||||+ . +. .+|||+++||+
T Consensus 1 Gd~~gi~~k-Ldyl~~lGv~~----I~l~Pi~~--------------------~--~~------~~~gY~~~d~~----- 42 (316)
T PF00128_consen 1 GDFRGIIDK-LDYLKDLGVNA----IWLSPIFE--------------------S--PN------GYHGYDPSDYY----- 42 (316)
T ss_dssp SSHHHHHHT-HHHHHHHTESE----EEESS-EE--------------------S--SS------STTTTSESEEE-----
T ss_pred CCHHHHHHh-hHHHHHcCCCc----eecccccc--------------------c--cc------ccccccceeee-----
Confidence 899999999 99999999999 99999553 2 21 35999999999
Q ss_pred hhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCc--
Q psy9001 276 MYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL-- 353 (1351)
Q Consensus 276 ~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~-- 353 (1351)
+++ |+|||.+|||+||++||++||+||||+|+||++.++.+..
T Consensus 43 ----------------~vd-------------------~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~~~~~~~~~~ 87 (316)
T PF00128_consen 43 ----------------AVD-------------------PRFGTMEDFKELVDAAHKRGIKVILDVVPNHTSDDHPWFQDS 87 (316)
T ss_dssp ----------------EES-------------------TTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEETTSHHHHHH
T ss_pred ----------------ccc-------------------cccchhhhhhhhhhccccccceEEEeeecccccccccccccc
Confidence 777 9999999999999999999999999999999999886521
Q ss_pred -ccCCCCCCcCcccC-----CC------CCCCC------------C-CCccCCCCCHHHHHHHHHHHHHHHHHcCCCccc
Q psy9001 354 -NEFDGTQACFFHDG-----PR------GTHPL------------W-DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFR 408 (1351)
Q Consensus 354 -~~f~g~~~~yy~~~-----~~------~~~~~------------w-~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR 408 (1351)
.......+.||... +. ..... | +.++||+.+|+||++|++++++|++ ++|||||
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~i~~~~~~w~~-~giDGfR 166 (316)
T PF00128_consen 88 LNYFDNPYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVREYIIDVLKFWIE-EGIDGFR 166 (316)
T ss_dssp HTHTTSTTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTTSEEBETTSHHHHHHHHHHHHHHHH-TTESEEE
T ss_pred ccccccccccceeecccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhcccccchhh-ceEeEEE
Confidence 11221222333210 00 00111 1 1368999999999999999999998 5799999
Q ss_pred cccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCC
Q psy9001 409 FDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPA 472 (1351)
Q Consensus 409 ~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~~~~p~ 472 (1351)
+|+|..| ...||+.+++.+++..|++++|||.+.+.+.
T Consensus 167 ~D~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~i~E~~~~~~~ 204 (316)
T PF00128_consen 167 LDAAKHI--------------------------PKEFWKEFRDEVKEEKPDFFLIGEVWGGDNE 204 (316)
T ss_dssp ETTGGGS--------------------------SHHHHHHHHHHHHHHHTTSEEEEEESSSSHH
T ss_pred Ecccccc--------------------------chhhHHHHhhhhhhhccccceeeeeccCCcc
Confidence 9999988 2378999999999999999999999877543
No 56
>PLN02361 alpha-amylase
Probab=99.96 E-value=3.8e-28 Score=287.45 Aligned_cols=246 Identities=15% Similarity=0.242 Sum_probs=154.2
Q ss_pred cccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCcc---ccCcCCCCCCCccc-----cC-CCC
Q psy9001 1013 PEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVL---DGLNEFDGTQACFF-----HD-GPR 1082 (1351)
Q Consensus 1013 p~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~---~~l~~~dg~~~~yf-----~~-~~~ 1082 (1351)
.++||| +.|||.++|+|||.+|||+||++||++||+||+|+|+||++.... .....+++....|. .. ...
T Consensus 55 ~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH~~g~~~~~~~~y~~~~g~~~~wd~~~~~~~~~g~ 134 (401)
T PLN02361 55 LAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINHRVGTTQGHGGMYNRYDGIPLPWDEHAVTSCTGGL 134 (401)
T ss_pred CCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEccccccCCCCCCCCCcccCCCCcCCCCccccccccCCC
Confidence 346899 899999999999999999999999999999999999999864321 12223333211121 10 001
Q ss_pred CCCCC---C-CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHH
Q psy9001 1083 GTHPL---W-DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIY 1158 (1351)
Q Consensus 1083 g~~~~---w-~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~f 1158 (1351)
+.... + ...|||++||+||++|+++++||++++||||||+|++.++ +..|
T Consensus 135 ~~~~~~~~~~~lpDLd~~np~Vr~~l~~~~~wl~~~~GiDGfRlDavk~~--------------------------~~~f 188 (401)
T PLN02361 135 GNRSTGDNFNGVPNIDHTQHFVRKDIIGWLIWLRNDVGFQDFRFDFAKGY--------------------------SAKF 188 (401)
T ss_pred CCccCCCCCccCCccCCCCHHHHHHHHHHHHHHHhcCCCCEEEEeccccC--------------------------CHHH
Confidence 11111 1 2469999999999999999998888899999999999988 4567
Q ss_pred HHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCccccc-----cccccc-----ccccccccccccccCchhHhhhc
Q psy9001 1159 LMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDY-----RLGQYL-----HQHSILFPRVGVEQAGKYKVVLD 1228 (1351)
Q Consensus 1159 l~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFdy-----~~~~~~-----h~~~~~f~~~~~e~n~~~rd~l~ 1228 (1351)
++++.+.+ .| ++++||.|.+..... + .+-+.++. .+..++ ..+.++|+.. ..+++++.
T Consensus 189 ~~~~~~~~---~p-~f~VGE~w~~~~~~~-~--d~~~~y~~~~~~~~l~~~~~~~~~~~~~fDF~l~-----~~l~~a~~ 256 (401)
T PLN02361 189 VKEYIEAA---KP-LFSVGEYWDSCNYSG-P--DYRLDYNQDSHRQRIVNWIDGTGGLSAAFDFTTK-----GILQEAVK 256 (401)
T ss_pred HHHHHHhh---CC-eEEEEEEecCCCcCC-c--ccccchhhhhHHHHHHHHHHhcCCcceeecHHHH-----HHHHHHHh
Confidence 77776554 45 789999997632100 0 00001100 000000 0112445544 45555552
Q ss_pred cCCCCCCCccccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCcccccccCCHHHHHHHHHHHHc
Q psy9001 1229 SDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYIQTESNMNGFGIQTL 1308 (1351)
Q Consensus 1229 ~d~~~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~~~~~~r~A~alllt 1308 (1351)
+.+.++.+.+ +++.......|.+. |+|++|||+.|... ........+++|.|++||
T Consensus 257 ------~~~~~l~~~~----------~~~~~~~~~~p~~a-----VTFvdNHDt~r~~~---~~~~~~~~~~~AyA~iLT 312 (401)
T PLN02361 257 ------GQWWRLRDAQ----------GKPPGVMGWWPSRA-----VTFIDNHDTGSTQA---HWPFPSDHIMEGYAYILT 312 (401)
T ss_pred ------hhHHHHhhhh----------cCCcchhhcChhhc-----eEecccCcCcchhh---ccCCchHHHHHHHHHHHC
Confidence 1122222111 01111122234444 99999999876311 112234678889999999
Q ss_pred cCCccEEEeecc
Q psy9001 1309 PTQSPLYLVAKI 1320 (1351)
Q Consensus 1309 spGiP~If~g~~ 1320 (1351)
.||+||||.|+.
T Consensus 313 ~pG~P~Vyyg~~ 324 (401)
T PLN02361 313 HPGIPTVFYDHF 324 (401)
T ss_pred CCCcCeEeeccc
Confidence 999999999975
No 57
>PLN00196 alpha-amylase; Provisional
Probab=99.95 E-value=8.9e-27 Score=278.84 Aligned_cols=188 Identities=19% Similarity=0.232 Sum_probs=133.6
Q ss_pred CCceEEEEec-CCccCCCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccC
Q psy9001 177 DNLKIYESHV-GICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAE 255 (1351)
Q Consensus 177 ~~~vIYE~hv-r~ft~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~ 255 (1351)
.+-+++|.+- .++ ....|.|++|+++ ||||++||||+ |||+|+|+ .
T Consensus 23 ~~~v~~Q~F~W~~~--~~~gg~~~~i~~k-ldyL~~LGvta----IWL~P~~~--------------------s------ 69 (428)
T PLN00196 23 AGQVLFQGFNWESW--KQNGGWYNFLMGK-VDDIAAAGITH----VWLPPPSH--------------------S------ 69 (428)
T ss_pred CCCEEEEeeccCCC--CCCCcCHHHHHHH-HHHHHHcCCCE----EEeCCCCC--------------------C------
Confidence 3445555443 111 2234789999998 99999999999 99999443 1
Q ss_pred CCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCE
Q psy9001 256 SHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLY 335 (1351)
Q Consensus 256 s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~ 335 (1351)
..++||++.||| .+++ ++||+.+|||+||++||++||+
T Consensus 70 ---~s~hGY~~~D~y---------------------~ld~------------------~~fGt~~elk~Lv~~aH~~GIk 107 (428)
T PLN00196 70 ---VSEQGYMPGRLY---------------------DLDA------------------SKYGNEAQLKSLIEAFHGKGVQ 107 (428)
T ss_pred ---CCCCCCCccccC---------------------CCCc------------------ccCCCHHHHHHHHHHHHHCCCE
Confidence 124899999999 4430 5899999999999999999999
Q ss_pred EEEEeeccccccCCcCCc---ccCCCCC----CcCccc----------CCCCCCCCC----CCccCCCCCHHHHHHHHHH
Q psy9001 336 VLLDVVHSHASKNVLDGL---NEFDGTQ----ACFFHD----------GPRGTHPLW----DSRLFNYSEIEVLRFLLSN 394 (1351)
Q Consensus 336 VILDvV~NH~~~~~~~~~---~~f~g~~----~~yy~~----------~~~~~~~~w----~~~~ln~~~p~v~~~l~~~ 394 (1351)
||+|+|+||++.++.... ..|.+.. ..|+.. +..+.+..| ..++||+.||+|+++|+++
T Consensus 108 VilDvV~NH~~~~~~~~~~~y~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~ 187 (428)
T PLN00196 108 VIADIVINHRTAEHKDGRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGADFAAAPDIDHLNKRVQRELIGW 187 (428)
T ss_pred EEEEECccCcccccccCCCceEECCCCCCCCccccccccCCCCcccccCCCCceeCCCCCCCCCccCCCCHHHHHHHHHH
Confidence 999999999997653211 1232211 122210 001111111 2378999999999999999
Q ss_pred HHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEcCCC
Q psy9001 395 LRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSG 469 (1351)
Q Consensus 395 l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~~~ 469 (1351)
+++|++++||||||+|+|.++ ...|++. .+++.+| .++|||.|.+
T Consensus 188 ~~wl~~~~GiDG~RlD~ak~~--------------------------~~~f~~~---~v~~~~p-~f~VGE~W~~ 232 (428)
T PLN00196 188 LLWLKSDIGFDAWRLDFAKGY--------------------------SAEVAKV---YIDGTEP-SFAVAEIWTS 232 (428)
T ss_pred HHHHhhCCCCCEEEeehhhhC--------------------------CHHHHHH---HHHccCC-cEEEEEEecc
Confidence 999988899999999999877 1235544 3555667 7799999865
No 58
>PLN02784 alpha-amylase
Probab=99.94 E-value=4.1e-26 Score=282.28 Aligned_cols=243 Identities=19% Similarity=0.287 Sum_probs=150.4
Q ss_pred ccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCcccc---CcCCCCCCCccccC-----C----
Q psy9001 1014 EQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG---LNEFDGTQACFFHD-----G---- 1080 (1351)
Q Consensus 1014 ~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~---l~~~dg~~~~yf~~-----~---- 1080 (1351)
+++|| +.|||.++++|||.+|||+||++||++||+||+|+|+||++...... .+.+.+.. .|... +
T Consensus 548 s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDiViNH~ag~f~~~~g~~~~f~g~~-dW~d~~i~~ddp~F~ 626 (894)
T PLN02784 548 SPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDAVLNHRCAHFQNQNGVWNIFGGRL-NWDDRAVVADDPHFQ 626 (894)
T ss_pred CCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEECcccccccccCCCCcccccCCee-cCCCCcccCCCcccC
Confidence 56899 89999999999999999999999999999999999999998653211 11111110 11100 0
Q ss_pred CCCC---CCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHH
Q psy9001 1081 PRGT---HPLW-DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDAL 1156 (1351)
Q Consensus 1081 ~~g~---~~~w-~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~ 1156 (1351)
.++. ..+| ...|||++||+||++|+++++||++++||||||||+|.++ .-
T Consensus 627 GrG~~~sgddf~~lPDLDh~npeVR~eL~~WlkWL~~e~G~DGfRLDaVKgf--------------------------~~ 680 (894)
T PLN02784 627 GRGNKSSGDNFHAAPNIDHSQDFVRKDLKEWLCWMRKEVGYDGWRLDFVRGF--------------------------WG 680 (894)
T ss_pred CcCCcCcccccCcCCcCCCCCHHHHHHHHHHHHHHHhccCCCEEEEeccCCC--------------------------CH
Confidence 0010 0112 3459999999999999999999999999999999999855 12
Q ss_pred HHHHHHHHHHHhhCCCeEEEEccCCCCCCcccccccCCcccc--cc---cccccc-----cccccccccccccCchhHhh
Q psy9001 1157 IYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFD--YR---LGQYLH-----QHSILFPRVGVEQAGKYKVV 1226 (1351)
Q Consensus 1157 ~fl~~~~~~l~~~~Pd~ilIaE~~~~~p~~~~p~~~gg~GFd--y~---~~~~~h-----~~~~~f~~~~~e~n~~~rd~ 1226 (1351)
.|++ +.++...| .++|||.|.+...- .+.+.++ +. +..++. ...+||+.. +.++++
T Consensus 681 ~Fvk---eyv~a~kp-~F~VGEyWd~~~~~-----~g~~~Ynqd~~rq~l~dwi~~tgg~~saFDfplk-----~~L~~A 746 (894)
T PLN02784 681 GYVK---DYMEASEP-YFAVGEYWDSLSYT-----YGEMDYNQDAHRQRIVDWINATNGTAGAFDVTTK-----GILHSA 746 (894)
T ss_pred HHHH---HHHhccCC-cEEEEEeccccccc-----cCccccCchhHHHHHHHHHHhCCCceeeechhHH-----HHHHHH
Confidence 2333 33444455 69999999763210 0111111 10 000000 012334433 445555
Q ss_pred hccCCCCCCCccccCCCcccccccCCcccccCccccccCCCCccceeeecccCCCCCcCCcccccccCCHHHHHHHHHHH
Q psy9001 1227 LDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGIIDEVNLLNNVREERNNENNMKRYIQTESNMNGFGIQ 1306 (1351)
Q Consensus 1227 l~~d~~~~~gf~r~~~~~~~~~~~~~~~~r~~s~~~y~p~~~~~~~~vnfv~nHD~~rn~~~r~~~~~~~~~~r~A~all 1306 (1351)
+.+ +.++++... .++...+....|.+. |+|++|||.... +. .........++|.|++
T Consensus 747 ~~~-----~e~wrL~d~----------~g~~~glv~~~P~~A-----VTFVDNHDTg~~--Q~-~w~~p~~k~~~AYAyI 803 (894)
T PLN02784 747 LER-----CEYWRLSDQ----------KGKPPGVVGWWPSRA-----VTFIENHDTGST--QG-HWRFPEGKEMQGYAYI 803 (894)
T ss_pred Hhc-----cchhhhhhc----------cCCCCCeeccccCce-----EEEecCCCCCCC--cc-cCCCCccchhhHHHHH
Confidence 521 122222211 011223333456655 999999998642 11 1222334577899999
Q ss_pred HccCCccEEEeecc
Q psy9001 1307 TLPTQSPLYLVAKI 1320 (1351)
Q Consensus 1307 ltspGiP~If~g~~ 1320 (1351)
||.||+||||.+..
T Consensus 804 LthpG~PcVFy~h~ 817 (894)
T PLN02784 804 LTHPGTPAVFYDHI 817 (894)
T ss_pred HcCCCcceEEehhh
Confidence 99999999999975
No 59
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=99.93 E-value=5.3e-25 Score=270.55 Aligned_cols=165 Identities=24% Similarity=0.307 Sum_probs=128.9
Q ss_pred ceEEEEecCCccCC--------CCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEcccccccccc
Q psy9001 179 LKIYESHVGICTQE--------QKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKT 250 (1351)
Q Consensus 179 ~vIYE~hvr~ft~~--------~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~ 250 (1351)
.+||++.++.|... .+.|+++||+++ ||||++|||++ |||+|||+ .
T Consensus 1 ~viyqi~~~~f~d~~~~~~~~~~G~Gdl~Gi~~~-LdYl~~LGv~a----iwl~Pi~~--------------------s- 54 (505)
T COG0366 1 AVIYQIYPDRFADSNGSNGPDYDGGGDLKGITEK-LDYLKELGVDA----IWLSPIFE--------------------S- 54 (505)
T ss_pred CcEEEEechhhcCCCCCCccCCCCcccHHhHHHh-hhHHHHhCCCE----EEeCCCCC--------------------C-
Confidence 48999999999543 336999999998 99999999999 99999664 1
Q ss_pred ccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHH
Q psy9001 251 VAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 330 (1351)
Q Consensus 251 ~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H 330 (1351)
+ ..++||++.||. .++ |.+|++++|++||++||
T Consensus 55 -~------~~~~gY~~~Dy~---------------------~id-------------------~~~Gt~~d~~~li~~~H 87 (505)
T COG0366 55 -P------QADHGYDVSDYT---------------------KVD-------------------PHFGTEEDFKELVEEAH 87 (505)
T ss_pred -C------ccCCCccccchh---------------------hcC-------------------cccCCHHHHHHHHHHHH
Confidence 1 345899999998 555 99999999999999999
Q ss_pred HcCCEEEEEeeccccccCCcCCcccC-CCCC---CcCccc-C-------C-----CCCCCCCC---------------Cc
Q psy9001 331 KAGLYVLLDVVHSHASKNVLDGLNEF-DGTQ---ACFFHD-G-------P-----RGTHPLWD---------------SR 378 (1351)
Q Consensus 331 ~~GI~VILDvV~NH~~~~~~~~~~~f-~g~~---~~yy~~-~-------~-----~~~~~~w~---------------~~ 378 (1351)
++||+||||+|+||++..+.+..... .+.. ..||.. . + ......|. -.
T Consensus 88 ~~gi~vi~D~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (505)
T COG0366 88 KRGIKVILDLVFNHTSDEHPWFKEARSSKPNPKRSDYYIWRDPDPDGTPPNNWFSVFGGDAWTWGNTGEYYLHLFSSEQP 167 (505)
T ss_pred HCCCEEEEEeccCcCCCccHHHHHHhcCCCCcccCCCceEccCcccCCCCCcchhhcCCCCCCcCCCCceEEEecCCCCC
Confidence 99999999999999999886553221 1111 133321 0 0 01111221 14
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCCcccccccccccc
Q psy9001 379 LFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLY 417 (1351)
Q Consensus 379 ~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~ 417 (1351)
+||+.+|+||+.+++.++||++ +||||||+|++.++..
T Consensus 168 dln~~n~~v~~~~~~~~~~W~~-~gvDGfRlDa~~~~~~ 205 (505)
T COG0366 168 DLNWENPEVREELLDVVKFWLD-KGVDGFRLDAAKHISK 205 (505)
T ss_pred CcCCCCHHHHHHHHHHHHHHHH-cCCCeEEeccHhhhcc
Confidence 6999999999999999999999 8999999999999853
No 60
>PLN02361 alpha-amylase
Probab=99.92 E-value=1.4e-24 Score=257.20 Aligned_cols=169 Identities=17% Similarity=0.264 Sum_probs=126.0
Q ss_pred CHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccchhh
Q psy9001 197 SYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEM 276 (1351)
Q Consensus 197 ~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~ 276 (1351)
-|++|+++ ||||++||||+ |||+|+++ . ..++||++.|||
T Consensus 27 ~w~~i~~k-l~~l~~lG~t~----iwl~P~~~--------------------~---------~~~~GY~~~d~y------ 66 (401)
T PLN02361 27 WWRNLEGK-VPDLAKSGFTS----AWLPPPSQ--------------------S---------LAPEGYLPQNLY------ 66 (401)
T ss_pred HHHHHHHH-HHHHHHcCCCE----EEeCCCCc--------------------C---------CCCCCCCccccc------
Confidence 68999998 99999999999 99999442 1 123899999999
Q ss_pred hcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCc--CC-c
Q psy9001 277 YTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVL--DG-L 353 (1351)
Q Consensus 277 ~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~--~~-~ 353 (1351)
.++ ++||+.+||++||++||++||+||+|+|+||++.... .+ .
T Consensus 67 ---------------~~~-------------------~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH~~g~~~~~~~~y 112 (401)
T PLN02361 67 ---------------SLN-------------------SAYGSEHLLKSLLRKMKQYNVRAMADIVINHRVGTTQGHGGMY 112 (401)
T ss_pred ---------------ccC-------------------cccCCHHHHHHHHHHHHHcCCEEEEEEccccccCCCCCCCCCc
Confidence 666 9999999999999999999999999999999864321 11 1
Q ss_pred ccCCCCCCcC-----ccc-CCCCCCCC---C-CCccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCC
Q psy9001 354 NEFDGTQACF-----FHD-GPRGTHPL---W-DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCG 423 (1351)
Q Consensus 354 ~~f~g~~~~y-----y~~-~~~~~~~~---w-~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~ 423 (1351)
..|.|....| +.. ...+.+.. + ..++||+.||+||++|++.+++|++++||||||+|+|.++
T Consensus 113 ~~~~g~~~~wd~~~~~~~~~g~~~~~~~~~~~~lpDLd~~np~Vr~~l~~~~~wl~~~~GiDGfRlDavk~~-------- 184 (401)
T PLN02361 113 NRYDGIPLPWDEHAVTSCTGGLGNRSTGDNFNGVPNIDHTQHFVRKDIIGWLIWLRNDVGFQDFRFDFAKGY-------- 184 (401)
T ss_pred ccCCCCcCCCCccccccccCCCCCccCCCCCccCCccCCCCHHHHHHHHHHHHHHHhcCCCCEEEEeccccC--------
Confidence 2233321111 111 00111111 1 1379999999999999999987777799999999999988
Q ss_pred CCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEcCCC
Q psy9001 424 EGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSG 469 (1351)
Q Consensus 424 ~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~~~ 469 (1351)
+..|++.+.+.+ .| ++++||.|.+
T Consensus 185 ------------------~~~f~~~~~~~~---~p-~f~VGE~w~~ 208 (401)
T PLN02361 185 ------------------SAKFVKEYIEAA---KP-LFSVGEYWDS 208 (401)
T ss_pred ------------------CHHHHHHHHHhh---CC-eEEEEEEecC
Confidence 245777776543 45 7899999876
No 61
>PRK13840 sucrose phosphorylase; Provisional
Probab=99.90 E-value=8.3e-24 Score=254.59 Aligned_cols=148 Identities=14% Similarity=0.163 Sum_probs=108.9
Q ss_pred ccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcC----CCCCCCccccC-C---C---
Q psy9001 1014 EQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNE----FDGTQACFFHD-G---P--- 1081 (1351)
Q Consensus 1014 ~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~----~dg~~~~yf~~-~---~--- 1081 (1351)
+.+|| ++||+.|||+|||.+||++|++ ||+||||+|+||||..|.+.... -++....||.. + +
T Consensus 49 sD~GYdv~DY~~VDP~fGt~eDf~~L~~-----giklmlDlV~NHtS~~h~WFqd~l~~~~~s~Y~D~fi~~d~~~~~~~ 123 (495)
T PRK13840 49 ADAGFDPIDHTKVDPRLGDWDDVKALGK-----THDIMADLIVNHMSAESPQFQDVLAKGEASEYWPMFLTKDKVFPDGA 123 (495)
T ss_pred CCCCCCCcChhhcCcccCCHHHHHHHHh-----CCeEEEEECCCcCCCCcHHHHHHHHhCCCCCccCeEEECCCCCcCCC
Confidence 46899 9999999999999999999995 99999999999999998432211 12233344431 1 0
Q ss_pred ------------CCC-CC-----------CCC-----CCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccC
Q psy9001 1082 ------------RGT-HP-----------LWD-----SRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHN 1132 (1351)
Q Consensus 1082 ------------~g~-~~-----------~w~-----~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~ 1132 (1351)
.+. .+ .|+ ..|||++||+|+++|+++++||++. ||||||+|++..+.+..
T Consensus 124 ~~~~~~~if~~~~g~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~NP~V~~~i~~il~fwl~~-GVDgfRLDAv~~l~K~~ 202 (495)
T PRK13840 124 TEEDLAGIYRPRPGLPFTTYTLADGKTRLVWTTFTPQQIDIDVHSAAGWEYLMSILDRFAAS-HVTLIRLDAAGYAIKKA 202 (495)
T ss_pred CCcccccccCCCCCCcccceEecCCCceEEeccCCcccceeCCCCHHHHHHHHHHHHHHHHC-CCCEEEEechhhhhcCC
Confidence 010 11 122 2489999999999999999999985 99999999999885432
Q ss_pred CCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccCCC
Q psy9001 1133 HGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSG 1182 (1351)
Q Consensus 1133 ~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~~ 1182 (1351)
|... + ..++++.+|++++..++.. +..+|+|.++.
T Consensus 203 -gt~c---------~---~~pe~~~~l~~lr~~~~~~--~~~ll~Ei~~y 237 (495)
T PRK13840 203 -GTSC---------F---MIPETFEFIDRLAKEARAR--GMEVLVEIHSY 237 (495)
T ss_pred -CCCc---------C---CChHHHHHHHHHHHHhhhc--CCEEEEeCccc
Confidence 1000 0 1357889999999999765 56689997643
No 62
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=99.90 E-value=5.9e-23 Score=252.46 Aligned_cols=169 Identities=24% Similarity=0.334 Sum_probs=119.8
Q ss_pred ceEEEeecCCcccCCCcccccccccccccceeccCCCcccccccccccccCC-ceEEEecCCCCCCCCcccccCccceec
Q psy9001 891 LKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDF-GKWELVLPPNPDGDFNNWNREEFAYKK 969 (1351)
Q Consensus 891 ~iIYE~HV~~~s~~~~~gty~~f~~~~lp~ik~lG~fn~~~~~~~~l~~lg~-giwel~ip~~~~g~~Y~~~~~~~~y~~ 969 (1351)
++||++-.+.|......+ .+.-.-.|++.+++.+++|++.+|+ .+|.
T Consensus 1 ~viyqi~~~~f~d~~~~~---------~~~~~G~Gdl~Gi~~~LdYl~~LGv~aiwl----------------------- 48 (505)
T COG0366 1 AVIYQIYPDRFADSNGSN---------GPDYDGGGDLKGITEKLDYLKELGVDAIWL----------------------- 48 (505)
T ss_pred CcEEEEechhhcCCCCCC---------ccCCCCcccHHhHHHhhhHHHHhCCCEEEe-----------------------
Confidence 478888888776543322 1111225778887778888877665 3443
Q ss_pred CCccceeeecCCCCCCCccccccCcceeeecccCCCCCCCCCC-cccccc-ccccccccCCCCCHHHHHHHHHHHHHcCC
Q psy9001 970 LDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRFGT-PEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGL 1047 (1351)
Q Consensus 970 ~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~~G~~~~~~~s-p~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI 1047 (1351)
+|++.+ .++||| +.||+.|+|.|||++||++||++||++||
T Consensus 49 -------------------------------------~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi 91 (505)
T COG0366 49 -------------------------------------SPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGI 91 (505)
T ss_pred -------------------------------------CCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCC
Confidence 333445 478999 99999999999999999999999999999
Q ss_pred EEEEEeecccccCCcccc---CcCCCCCC-Ccccc-CC-------C-----CCCCCCCC---------------CCCCCC
Q psy9001 1048 YVLLDVVHSHASKNVLDG---LNEFDGTQ-ACFFH-DG-------P-----RGTHPLWD---------------SRLFNY 1095 (1351)
Q Consensus 1048 ~VILDVV~NHts~~~~~~---l~~~dg~~-~~yf~-~~-------~-----~g~~~~w~---------------~~dlN~ 1095 (1351)
+||||+|+||++..|... ........ ..||. .. + ......|. ..+||+
T Consensus 92 ~vi~D~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~ 171 (505)
T COG0366 92 KVILDLVFNHTSDEHPWFKEARSSKPNPKRSDYYIWRDPDPDGTPPNNWFSVFGGDAWTWGNTGEYYLHLFSSEQPDLNW 171 (505)
T ss_pred EEEEEeccCcCCCccHHHHHHhcCCCCcccCCCceEccCcccCCCCCcchhhcCCCCCCcCCCCceEEEecCCCCCCcCC
Confidence 999999999999988322 11111111 12222 10 0 00011121 127999
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCeEEEcCccccc
Q psy9001 1096 SEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSML 1129 (1351)
Q Consensus 1096 ~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~ 1129 (1351)
.|++||+++++.++||++ .||||||+|++.++.
T Consensus 172 ~n~~v~~~~~~~~~~W~~-~gvDGfRlDa~~~~~ 204 (505)
T COG0366 172 ENPEVREELLDVVKFWLD-KGVDGFRLDAAKHIS 204 (505)
T ss_pred CCHHHHHHHHHHHHHHHH-cCCCeEEeccHhhhc
Confidence 999999999999999999 699999999999884
No 63
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=99.89 E-value=2.3e-23 Score=249.33 Aligned_cols=153 Identities=18% Similarity=0.217 Sum_probs=117.0
Q ss_pred CCCCCCCcccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCC----CCCCCcccc-C
Q psy9001 1006 LLDRFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF----DGTQACFFH-D 1079 (1351)
Q Consensus 1006 ~~~~~~sp~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~----dg~~~~yf~-~ 1079 (1351)
++|+|.|+++||| ++||+.|||+|||.+||++|+++ |+||+|+|+||||..|.+..... ++....||. .
T Consensus 36 LlPffps~sD~GYdv~DY~~VDP~~Gt~~Df~~L~~~-----~kvmlDlV~NHtS~~h~WFq~~~~~~~~s~y~d~fi~~ 110 (470)
T TIGR03852 36 LLPFFPSTGDRGFAPMDYTEVDPAFGDWSDVEALSEK-----YYLMFDFMINHISRQSEYYQDFLEKKDNSKYKDLFIRY 110 (470)
T ss_pred ECCCCcCCCCCCcCchhhceeCcccCCHHHHHHHHHh-----hhHHhhhcccccccchHHHHHHHhcCCCCCccceEEec
Confidence 4677888889999 99999999999999999999997 89999999999999984332211 223345554 1
Q ss_pred ------C-CC-------------CCCCC-----------CC-----CCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEc
Q psy9001 1080 ------G-PR-------------GTHPL-----------WD-----SRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 1123 (1351)
Q Consensus 1080 ------~-~~-------------g~~~~-----------w~-----~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD 1123 (1351)
+ +. ..... |+ ..|||+.||+|+++|.++++||++. ||||||+|
T Consensus 111 ~~~w~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~np~v~e~i~~il~fwl~~-GvdgfRLD 189 (470)
T TIGR03852 111 KDFWPNGRPTQEDVDLIYKRKDRAPYQEVTFADGSTEKVWNTFGEEQIDLDVTSETTKRFIRDNLENLAEH-GASIIRLD 189 (470)
T ss_pred ccccCCCCccccccccccCCCCCCCCCceEEcCCCCeEEEccCCccccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEe
Confidence 0 00 00011 21 2389999999999999999999975 99999999
Q ss_pred CcccccccCCCCCCCCCCCcccccCCc---CChhHHHHHHHHHHHHHhhCCCeEEEEccCC
Q psy9001 1124 GVTSMLYHNHGCGEGFSGHYDEYFGLN---VDTDALIYLMVANKFLHDKYPEIITIAEDVS 1181 (1351)
Q Consensus 1124 ~a~~m~~~~~g~~~~~~~~~~~~~g~~---~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~~ 1181 (1351)
+++.+.+.. |++ ...+++.+++++++.+ ..|++++|+|.+.
T Consensus 190 Av~~l~K~~---------------Gt~c~~l~pet~~~l~~~r~~~--~~~~~~ll~E~~~ 233 (470)
T TIGR03852 190 AFAYAVKKL---------------GTNDFFVEPEIWELLDEVRDIL--APTGAEILPEIHE 233 (470)
T ss_pred cchhhcccC---------------CCCcccCChhHHHHHHHHHHHh--ccCCCEEEeHhhh
Confidence 999886432 111 1267899999999988 5679999999854
No 64
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=99.89 E-value=1.7e-21 Score=235.00 Aligned_cols=212 Identities=13% Similarity=0.163 Sum_probs=137.5
Q ss_pred CCceEEEEecCCccCCCCCCCHHHHHH-hhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccC
Q psy9001 177 DNLKIYESHVGICTQEQKCASYEDFVR-VVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAE 255 (1351)
Q Consensus 177 ~~~vIYE~hvr~ft~~~~~G~~~gi~~-~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~ 255 (1351)
...+=+.+++.+.....+..-+..+.+ .+.+||++|||++ |||+|+|+ +|
T Consensus 50 ~a~~W~~~~P~s~i~~~~~s~~~~L~~~~~wdyL~~LGV~~----iwl~P~~~--------------------SG----- 100 (688)
T TIGR02455 50 IASVWFTAYPAAIIAPEGCSVLEALADDALWKALSEIGVQG----IHNGPIKL--------------------SG----- 100 (688)
T ss_pred hcCeeEEecchhhcCCCCCcHHHHhcChHHHHHHHHhCCCE----EEeCccee--------------------cc-----
Confidence 455667888888754333333444433 5689999999999 99999553 21
Q ss_pred CCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCcccccc-ccccccCCCCCCHHHHHHHHHHHHHcCC
Q psy9001 256 SHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYL-VDECHKAGLFGTPEQLKYLVDECHKAGL 334 (1351)
Q Consensus 256 s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~-~d~~~id~~~G~~~efk~LV~~~H~~GI 334 (1351)
..|||+-+-.. ...|. +| +.|||+|||.+||++||++||++||
T Consensus 101 ----gi~g~~~tP~~-------------------------------D~gyDi~d-~~Idp~~GT~eDf~~L~~~Ah~~G~ 144 (688)
T TIGR02455 101 ----GIRGREFTPSI-------------------------------DGNFDRIS-FDIDPLLGSEEELIQLSRMAAAHNA 144 (688)
T ss_pred ----cccccCCCCCC-------------------------------CCCCCccc-CccCcccCCHHHHHHHHHHHHHCCC
Confidence 12554432211 11232 23 4667999999999999999999999
Q ss_pred EEEEEeeccccccCCcCCcccC-CCCCCcCcc-------------cCCCC------------------------------
Q psy9001 335 YVLLDVVHSHASKNVLDGLNEF-DGTQACFFH-------------DGPRG------------------------------ 370 (1351)
Q Consensus 335 ~VILDvV~NH~~~~~~~~~~~f-~g~~~~yy~-------------~~~~~------------------------------ 370 (1351)
+||+|+|+|||+.+++..+... ++.-+.||+ +.+.+
T Consensus 145 ~vi~DlVpnHTs~ghdF~lAr~~~~~Y~g~Y~mvei~~~~W~vwpd~~~~~~~~~l~~~~~~~L~~~g~i~~~l~rviF~ 224 (688)
T TIGR02455 145 ITIDDIIPAHTGKGADFRLAELAHGDYPGLYHMVEIREEDWALLPEVPAGRDAVNLLPAQCDELKAKHYIVGQLQRVIFF 224 (688)
T ss_pred EEEEEeCCCCCCCCcchHHHhhcCCCCCCceeeccccccccccCCCCCcccccccccHHHHHHHhhccCcccccccceec
Confidence 9999999999999876222111 222233451 00111
Q ss_pred ----CCCCCC------------------------CccCCCCCHH--HHHHHH-HHHHHHHHHcCCCcccccccccccccc
Q psy9001 371 ----THPLWD------------------------SRLFNYSEIE--VLRFLL-SNLRWYLDEYQFDGFRFDGVTSMLYHN 419 (1351)
Q Consensus 371 ----~~~~w~------------------------~~~ln~~~p~--v~~~l~-~~l~~W~~e~~vDGfR~D~a~~~~~~~ 419 (1351)
+-.+|. -++||+.||. |++.|+ +++++|++ .|+||||+|++..|.-..
T Consensus 225 ~pg~e~s~Wt~d~~v~g~dG~~Rrw~Y~H~F~~~QPdLNw~dPs~av~~~~~gdal~~w~~-lG~~GfRLDAvpfLg~e~ 303 (688)
T TIGR02455 225 EPGIKDTDWSATGEITGVDGKTRRWVYLHYFKEGQPSLNWLDPTFAAQQLIIGDALHAIDC-LGARGLRLDANGFLGVER 303 (688)
T ss_pred CCCcccCCceecccccCCCccchhhhhhhhccCCCCccCccCccHHHHHHHHHHHHHHHHH-hccccceeccccceeeec
Confidence 112442 1489999999 999999 89999999 899999999999884322
Q ss_pred CCCCCCCCCCccccCCCccCchHHHHHHHHHHHHH--hhCCCeEEEEEcC
Q psy9001 420 HGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLH--DKYPEIITIAEDV 467 (1351)
Q Consensus 420 ~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~--~~~P~~~~iaE~~ 467 (1351)
...++++ .++..|++.+++.|. ..+|+.++++|..
T Consensus 304 ~~~~~~~-------------~e~h~ll~~~r~~l~~~~r~~Gg~ll~E~n 340 (688)
T TIGR02455 304 RAEGTAW-------------SEGHPLSLTGNQLIAGAIRKAGGFSFQELN 340 (688)
T ss_pred CCCCCCC-------------CccCHHHHHHHHHHHHhhhcCCeeEeeecc
Confidence 1111111 123455666666665 5566666666653
No 65
>PLN02784 alpha-amylase
Probab=99.88 E-value=2.7e-22 Score=248.70 Aligned_cols=189 Identities=20% Similarity=0.274 Sum_probs=134.2
Q ss_pred CCceEEEEecCCcc---CCCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccc
Q psy9001 177 DNLKIYESHVGICT---QEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAY 253 (1351)
Q Consensus 177 ~~~vIYE~hvr~ft---~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~ 253 (1351)
.....||+-+..|- +.+. .-|++|+++ ||||++||||+ |||+|+++ .
T Consensus 497 ~~~~~~eVmlQgF~Wds~~dg-~w~~~I~ek-ldyL~~LG~ta----IWLpP~~~--------------------s---- 546 (894)
T PLN02784 497 GTGSGFEILCQGFNWESHKSG-RWYMELGEK-AAELSSLGFTV----VWLPPPTE--------------------S---- 546 (894)
T ss_pred cccCCceEEEEeEEcCcCCCC-chHHHHHHH-HHHHHHhCCCE----EEeCCCCC--------------------C----
Confidence 34567888888773 3331 237899988 99999999999 99999432 2
Q ss_pred cCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcC
Q psy9001 254 AESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 333 (1351)
Q Consensus 254 ~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~G 333 (1351)
..++||++.||| .++ ++||+.+|||+||++||++|
T Consensus 547 -----~s~~GY~p~D~y---------------------~ld-------------------s~yGT~~ELk~LI~a~H~~G 581 (894)
T PLN02784 547 -----VSPEGYMPKDLY---------------------NLN-------------------SRYGTIDELKDLVKSFHEVG 581 (894)
T ss_pred -----CCCCCcCccccc---------------------ccC-------------------cCcCCHHHHHHHHHHHHHCC
Confidence 124899999999 666 89999999999999999999
Q ss_pred CEEEEEeeccccccCCc--CCc-ccCCCCC----------CcCccc-CCCCCCCCCC-CccCCCCCHHHHHHHHHHHHHH
Q psy9001 334 LYVLLDVVHSHASKNVL--DGL-NEFDGTQ----------ACFFHD-GPRGTHPLWD-SRLFNYSEIEVLRFLLSNLRWY 398 (1351)
Q Consensus 334 I~VILDvV~NH~~~~~~--~~~-~~f~g~~----------~~yy~~-~~~~~~~~w~-~~~ln~~~p~v~~~l~~~l~~W 398 (1351)
|+||+|+|+||++.... .+. ..|.+.. ...|.. +..-...+|. .++||+.||+||+.|.+.++||
T Consensus 582 IkVIlDiViNH~ag~f~~~~g~~~~f~g~~dW~d~~i~~ddp~F~GrG~~~sgddf~~lPDLDh~npeVR~eL~~WlkWL 661 (894)
T PLN02784 582 IKVLGDAVLNHRCAHFQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDLKEWLCWM 661 (894)
T ss_pred CEEEEEECcccccccccCCCCcccccCCeecCCCCcccCCCcccCCcCCcCcccccCcCCcCCCCCHHHHHHHHHHHHHH
Confidence 99999999999985421 111 1122210 000110 0000001122 3689999999999999999999
Q ss_pred HHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q psy9001 399 LDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGM 470 (1351)
Q Consensus 399 ~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~~~~ 470 (1351)
++++||||||+|+|..+ + ..|+ ++.+++..| .+++||.|.+.
T Consensus 662 ~~e~G~DGfRLDaVKgf-----------~---------------~~Fv---keyv~a~kp-~F~VGEyWd~~ 703 (894)
T PLN02784 662 RKEVGYDGWRLDFVRGF-----------W---------------GGYV---KDYMEASEP-YFAVGEYWDSL 703 (894)
T ss_pred HhccCCCEEEEeccCCC-----------C---------------HHHH---HHHHhccCC-cEEEEEecccc
Confidence 99999999999999754 1 1233 333445556 79999999873
No 66
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=99.88 E-value=3.1e-22 Score=239.76 Aligned_cols=179 Identities=15% Similarity=0.183 Sum_probs=132.6
Q ss_pred CCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccc
Q psy9001 192 EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWL 271 (1351)
Q Consensus 192 ~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~ 271 (1351)
.+..|++.+++++ ||++ ||++ |||||+|+ + + .+.||+++||+
T Consensus 13 g~glgdl~g~l~~---yL~~-~v~~----i~LlPffp--------------------s--~-------sD~GYdv~DY~- 54 (470)
T TIGR03852 13 GKNLKELNKVLEN---YFKD-AVGG----VHLLPFFP--------------------S--T-------GDRGFAPMDYT- 54 (470)
T ss_pred CCChhhHHHHHHH---HHHH-hCCE----EEECCCCc--------------------C--C-------CCCCcCchhhc-
Confidence 3567888888876 9999 7999 99999664 1 1 13799999999
Q ss_pred cchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcC
Q psy9001 272 MDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLD 351 (1351)
Q Consensus 272 ~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~ 351 (1351)
+++ |+||+.+||++|+++ |+||+|+|+||||.+|+|
T Consensus 55 --------------------~VD-------------------P~~Gt~~Df~~L~~~-----~kvmlDlV~NHtS~~h~W 90 (470)
T TIGR03852 55 --------------------EVD-------------------PAFGDWSDVEALSEK-----YYLMFDFMINHISRQSEY 90 (470)
T ss_pred --------------------eeC-------------------cccCCHHHHHHHHHh-----hhHHhhhcccccccchHH
Confidence 666 999999999999987 899999999999999987
Q ss_pred CcccCCC-CCC---cCcc-c------C-C-------------CCCCCC-----------CC-----CccCCCCCHHHHHH
Q psy9001 352 GLNEFDG-TQA---CFFH-D------G-P-------------RGTHPL-----------WD-----SRLFNYSEIEVLRF 390 (1351)
Q Consensus 352 ~~~~f~g-~~~---~yy~-~------~-~-------------~~~~~~-----------w~-----~~~ln~~~p~v~~~ 390 (1351)
+.....+ .++ .||. . + + ...+.. |+ ..+||+.||+|+++
T Consensus 91 Fq~~~~~~~~s~y~d~fi~~~~~w~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~np~v~e~ 170 (470)
T TIGR03852 91 YQDFLEKKDNSKYKDLFIRYKDFWPNGRPTQEDVDLIYKRKDRAPYQEVTFADGSTEKVWNTFGEEQIDLDVTSETTKRF 170 (470)
T ss_pred HHHHHhcCCCCCccceEEecccccCCCCccccccccccCCCCCCCCCceEEcCCCCeEEEccCCccccccCCCCHHHHHH
Confidence 6543322 122 3443 1 0 0 000011 21 25899999999999
Q ss_pred HHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEcC
Q psy9001 391 LLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDV 467 (1351)
Q Consensus 391 l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~ 467 (1351)
|.++++||++ .||||||+|++..+.... |. .. -....++.++++.+++.+ ..|++++|+|.+
T Consensus 171 i~~il~fwl~-~GvdgfRLDAv~~l~K~~-Gt----~c-------~~l~pet~~~l~~~r~~~--~~~~~~ll~E~~ 232 (470)
T TIGR03852 171 IRDNLENLAE-HGASIIRLDAFAYAVKKL-GT----ND-------FFVEPEIWELLDEVRDIL--APTGAEILPEIH 232 (470)
T ss_pred HHHHHHHHHH-cCCCEEEEecchhhcccC-CC----Cc-------ccCChhHHHHHHHHHHHh--ccCCCEEEeHhh
Confidence 9999999997 799999999999884221 10 00 011246789999999877 567999999986
No 67
>PRK13840 sucrose phosphorylase; Provisional
Probab=99.84 E-value=1.2e-20 Score=227.56 Aligned_cols=180 Identities=13% Similarity=0.153 Sum_probs=132.6
Q ss_pred CCCHHHHHHhhhH-HHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccc
Q psy9001 195 CASYEDFVRVVIP-RIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMD 273 (1351)
Q Consensus 195 ~G~~~gi~~~~L~-yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~ 273 (1351)
.|+++|++++ || ||++| |++ |||||+|+ |..++ ..||+++||+
T Consensus 16 ~GdL~gl~~k-Ld~yL~~l-v~~----vhllPff~-----------------------psp~s----D~GYdv~DY~--- 59 (495)
T PRK13840 16 DGGLKSLTAL-LDGRLDGL-FGG----VHILPFFY-----------------------PIDGA----DAGFDPIDHT--- 59 (495)
T ss_pred CCCHhHHHHH-HHHHHHHH-hCe----EEECCCcc-----------------------CCCCC----CCCCCCcChh---
Confidence 4899999998 99 59999 999 99999663 22222 3799999999
Q ss_pred hhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCc
Q psy9001 274 KEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL 353 (1351)
Q Consensus 274 ~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~ 353 (1351)
+++ |+||+.+||++|++ ||+||||+|+||||.+|+|+.
T Consensus 60 ------------------~VD-------------------P~fGt~eDf~~L~~-----giklmlDlV~NHtS~~h~WFq 97 (495)
T PRK13840 60 ------------------KVD-------------------PRLGDWDDVKALGK-----THDIMADLIVNHMSAESPQFQ 97 (495)
T ss_pred ------------------hcC-------------------cccCCHHHHHHHHh-----CCeEEEEECCCcCCCCcHHHH
Confidence 666 99999999999995 999999999999999987764
Q ss_pred ccC-CCCCC---cCcccCC-------------------CCC-CC-----------CCC-----CccCCCCCHHHHHHHHH
Q psy9001 354 NEF-DGTQA---CFFHDGP-------------------RGT-HP-----------LWD-----SRLFNYSEIEVLRFLLS 393 (1351)
Q Consensus 354 ~~f-~g~~~---~yy~~~~-------------------~~~-~~-----------~w~-----~~~ln~~~p~v~~~l~~ 393 (1351)
... .+.++ .||...+ .+. +. .|. -++||+.||+|+++|++
T Consensus 98 d~l~~~~~s~Y~D~fi~~d~~~~~~~~~~~~~~if~~~~g~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~NP~V~~~i~~ 177 (495)
T PRK13840 98 DVLAKGEASEYWPMFLTKDKVFPDGATEEDLAGIYRPRPGLPFTTYTLADGKTRLVWTTFTPQQIDIDVHSAAGWEYLMS 177 (495)
T ss_pred HHHHhCCCCCccCeEEECCCCCcCCCCCcccccccCCCCCCcccceEecCCCceEEeccCCcccceeCCCCHHHHHHHHH
Confidence 322 22222 2332100 000 11 122 26899999999999999
Q ss_pred HHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEcCC
Q psy9001 394 NLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVS 468 (1351)
Q Consensus 394 ~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~~~ 468 (1351)
+++||++ .||||||+|++..+.... | .. + ....+...||+++++.++.. +..+|+|.+.
T Consensus 178 il~fwl~-~GVDgfRLDAv~~l~K~~-g--t~--------c--~~~pe~~~~l~~lr~~~~~~--~~~ll~Ei~~ 236 (495)
T PRK13840 178 ILDRFAA-SHVTLIRLDAAGYAIKKA-G--TS--------C--FMIPETFEFIDRLAKEARAR--GMEVLVEIHS 236 (495)
T ss_pred HHHHHHH-CCCCEEEEechhhhhcCC-C--CC--------c--CCChHHHHHHHHHHHHhhhc--CCEEEEeCcc
Confidence 9999998 799999999998774221 1 00 0 01236778999999999765 5668999764
No 68
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=99.83 E-value=5.1e-20 Score=222.29 Aligned_cols=184 Identities=14% Similarity=0.126 Sum_probs=131.0
Q ss_pred cCcceeeecccCCCCCCCCCCc-ccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcC-
Q psy9001 992 LSQVKLVVRNQHGHLLDRFGTP-EQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNE- 1068 (1351)
Q Consensus 992 ~~~~~l~~~~~~G~~~~~~~sp-~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~- 1068 (1351)
++.+||.+..+-|.+...-..| ...|| ++| +.|||+|||.+||++||++||++||+||+|+|+||||..|. ....
T Consensus 88 V~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d-~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlVpnHTs~ghd-F~lAr 165 (688)
T TIGR02455 88 VQGIHNGPIKLSGGIRGREFTPSIDGNFDRIS-FDIDPLLGSEEELIQLSRMAAAHNAITIDDIIPAHTGKGAD-FRLAE 165 (688)
T ss_pred CCEEEeCcceecccccccCCCCCCCCCCCccc-CccCcccCCHHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcc-hHHHh
Confidence 3455654444444443333336 46899 999 59999999999999999999999999999999999999984 3111
Q ss_pred -CCCCCCcccc-------------C---C-------------------------------CCCCCCCC--CC--------
Q psy9001 1069 -FDGTQACFFH-------------D---G-------------------------------PRGTHPLW--DS-------- 1090 (1351)
Q Consensus 1069 -~dg~~~~yf~-------------~---~-------------------------------~~g~~~~w--~~-------- 1090 (1351)
-++..+.||+ . . +..+.++| ++
T Consensus 166 ~~~~~Y~g~Y~mvei~~~~W~vwpd~~~~~~~~~l~~~~~~~L~~~g~i~~~l~rviF~~pg~e~s~Wt~d~~v~g~dG~ 245 (688)
T TIGR02455 166 LAHGDYPGLYHMVEIREEDWALLPEVPAGRDAVNLLPAQCDELKAKHYIVGQLQRVIFFEPGIKDTDWSATGEITGVDGK 245 (688)
T ss_pred hcCCCCCCceeeccccccccccCCCCCcccccccccHHHHHHHhhccCcccccccceecCCCcccCCceecccccCCCcc
Confidence 1344455661 0 1 11123356 21
Q ss_pred --------------CCCCCCCHH--HHHHHH-HHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCCh
Q psy9001 1091 --------------RLFNYSEIE--VLRFLL-SNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDT 1153 (1351)
Q Consensus 1091 --------------~dlN~~np~--Vr~~li-d~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~ 1153 (1351)
.+||+.||. ||+.|+ +++++|++- |+||||+|++..|.......+. ...
T Consensus 246 ~Rrw~Y~H~F~~~QPdLNw~dPs~av~~~~~gdal~~w~~l-G~~GfRLDAvpfLg~e~~~~~~-------------~~~ 311 (688)
T TIGR02455 246 TRRWVYLHYFKEGQPSLNWLDPTFAAQQLIIGDALHAIDCL-GARGLRLDANGFLGVERRAEGT-------------AWS 311 (688)
T ss_pred chhhhhhhhccCCCCccCccCccHHHHHHHHHHHHHHHHHh-ccccceeccccceeeecCCCCC-------------CCC
Confidence 189999999 999999 999999995 9999999999988532221111 124
Q ss_pred hHHHHHHHHHHHHH--hhCCCeEEEEccCCCCCCcccccc
Q psy9001 1154 DALIYLMVANKFLH--DKYPEIITIAEDVSGMPASCRPVT 1191 (1351)
Q Consensus 1154 ~~~~fl~~~~~~l~--~~~Pd~ilIaE~~~~~p~~~~p~~ 1191 (1351)
++..+++.+++.|. ..+|+.++++|.-.....+.....
T Consensus 312 e~h~ll~~~r~~l~~~~r~~Gg~ll~E~nl~~~d~~~~~g 351 (688)
T TIGR02455 312 EGHPLSLTGNQLIAGAIRKAGGFSFQELNLTIDDIAAMSH 351 (688)
T ss_pred ccCHHHHHHHHHHHHhhhcCCeeEeeeccCCHHHHHHHhC
Confidence 57788899999998 889999999997544444444444
No 69
>KOG0471|consensus
Probab=99.82 E-value=2e-20 Score=230.99 Aligned_cols=169 Identities=21% Similarity=0.234 Sum_probs=131.4
Q ss_pred CCCCCCceEEEEecCCcc--CCCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEcccccccccc
Q psy9001 173 PKKPDNLKIYESHVGICT--QEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKT 250 (1351)
Q Consensus 173 p~~~~~~vIYE~hvr~ft--~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~ 250 (1351)
+.+|+..+|||+.+++|. .....|+++|+.++ |+|||+||+|+ |||+|+++ .
T Consensus 12 ~~~W~~~~~YQI~~~sF~~s~~d~~G~~~GI~~k-ldyi~~lG~ta----iWisP~~~--------------------s- 65 (545)
T KOG0471|consen 12 PDWWKTESIYQIYPDSFADSDGDGVGDLKGITSK-LDYIKELGFTA----IWLSPFTK--------------------S- 65 (545)
T ss_pred chhhhcCceeEEeccccccccCCCccccccchhh-hhHHHhcCCce----EEeCCCcC--------------------C-
Confidence 456889999999999995 44667999999999 99999999999 99999553 2
Q ss_pred ccccCCCCccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHH
Q psy9001 251 VAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 330 (1351)
Q Consensus 251 ~~~~~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H 330 (1351)
+ .-++||++.||+ .+. |+|||.++|++||+++|
T Consensus 66 -~------~~~~GY~~~d~~---------------------~l~-------------------p~fGt~edf~~Li~~~h 98 (545)
T KOG0471|consen 66 -S------KPDFGYDASDLE---------------------QLR-------------------PRFGTEEDFKELILAMH 98 (545)
T ss_pred -C------HHHhccCccchh---------------------hhc-------------------ccccHHHHHHHHHHHHh
Confidence 1 125899999999 666 99999999999999999
Q ss_pred HcCCEEEEEeeccccccCCcCCcccCCCCCC--cCcccCCCC--------CCCCC-------------------C-----
Q psy9001 331 KAGLYVLLDVVHSHASKNVLDGLNEFDGTQA--CFFHDGPRG--------THPLW-------------------D----- 376 (1351)
Q Consensus 331 ~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~--~yy~~~~~~--------~~~~w-------------------~----- 376 (1351)
++||++|+|+|+||++..++|+......... .+|...+.. ...+| .
T Consensus 99 ~~gi~ii~D~viNh~~~~~~wf~~~~~~~~~y~d~~~~~~~~~~~~g~~~~p~nw~~~~~~s~~~~~e~~~~~~l~~~~~ 178 (545)
T KOG0471|consen 99 KLGIKIIADLVINHRSDEVEWFKASPTSKTGYEDWYPWHDGSSLDVGKRIPPLNWLSVFGGSAWPFDEGRQKYYLGQFAV 178 (545)
T ss_pred hcceEEEEeeccccCCccccccccCccccccceeeeeccCcccccccCCCCccchHhhhccccCcccccccceeccchhh
Confidence 9999999999999999777665422211111 111110000 00111 1
Q ss_pred -CccCCCCCHHHHHHHHHHHH-HHHHHcCCCcccccccccc
Q psy9001 377 -SRLFNYSEIEVLRFLLSNLR-WYLDEYQFDGFRFDGVTSM 415 (1351)
Q Consensus 377 -~~~ln~~~p~v~~~l~~~l~-~W~~e~~vDGfR~D~a~~~ 415 (1351)
.+++|+.+|+|++.|.++++ +|++ +||||||+|++..+
T Consensus 179 ~~pDln~~n~~V~~~~~~~l~~~~~~-~gvdGfRiD~v~~~ 218 (545)
T KOG0471|consen 179 LQPDLNYENPDVRKAIKEWLRDFWLE-KGVDGFRIDAVKGY 218 (545)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHhh-cCCCeEEEEccccc
Confidence 25899999999999999999 7777 89999999999977
No 70
>KOG0471|consensus
Probab=99.77 E-value=3.6e-18 Score=211.05 Aligned_cols=165 Identities=23% Similarity=0.277 Sum_probs=118.2
Q ss_pred CCceEEEeecCCcccCCCcccccccccccccceeccCCCcccccccccccccCC-ceEEEecCCCCCCCCcccccCccce
Q psy9001 889 ENLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDF-GKWELVLPPNPDGDFNNWNREEFAY 967 (1351)
Q Consensus 889 ~d~iIYE~HV~~~s~~~~~gty~~f~~~~lp~ik~lG~fn~~~~~~~~l~~lg~-giwel~ip~~~~g~~Y~~~~~~~~y 967 (1351)
....|||.-.+.|..+...|. |+.++++.++++++.+|. .+|.
T Consensus 16 ~~~~~YQI~~~sF~~s~~d~~---------------G~~~GI~~kldyi~~lG~taiWi--------------------- 59 (545)
T KOG0471|consen 16 KTESIYQIYPDSFADSDGDGV---------------GDLKGITSKLDYIKELGFTAIWL--------------------- 59 (545)
T ss_pred hcCceeEEeccccccccCCCc---------------cccccchhhhhHHHhcCCceEEe---------------------
Confidence 567799999999986654442 777777777777766543 2333
Q ss_pred ecCCccceeeecCCCCCCCccccccCcceeeecccCCCCCCCCCCc-ccccc-ccccccccCCCCCHHHHHHHHHHHHHc
Q psy9001 968 KKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRFGTP-EQLKY-LVDECHKAGLFGTPEQLKYLVDECHKA 1045 (1351)
Q Consensus 968 ~~~d~gy~~~~~pp~~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp-~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~ 1045 (1351)
+|++.++ .+||| +.||+.++|+|||.+||++||+++|++
T Consensus 60 ---------------------------------------sP~~~s~~~~~GY~~~d~~~l~p~fGt~edf~~Li~~~h~~ 100 (545)
T KOG0471|consen 60 ---------------------------------------SPFTKSSKPDFGYDASDLEQLRPRFGTEEDFKELILAMHKL 100 (545)
T ss_pred ---------------------------------------CCCcCCCHHHhccCccchhhhcccccHHHHHHHHHHHHhhc
Confidence 2334444 46999 999999999999999999999999999
Q ss_pred CCEEEEEeecccccCCccccCcCCCCCCC--cccc-CCCC-------CCCCCC-------------------------CC
Q psy9001 1046 GLYVLLDVVHSHASKNVLDGLNEFDGTQA--CFFH-DGPR-------GTHPLW-------------------------DS 1090 (1351)
Q Consensus 1046 GI~VILDVV~NHts~~~~~~l~~~dg~~~--~yf~-~~~~-------g~~~~w-------------------------~~ 1090 (1351)
||++|+|+|+||++..|.+.......... .+|. .+.. ....+| ..
T Consensus 101 gi~ii~D~viNh~~~~~~wf~~~~~~~~~y~d~~~~~~~~~~~~g~~~~p~nw~~~~~~s~~~~~e~~~~~~l~~~~~~~ 180 (545)
T KOG0471|consen 101 GIKIIADLVINHRSDEVEWFKASPTSKTGYEDWYPWHDGSSLDVGKRIPPLNWLSVFGGSAWPFDEGRQKYYLGQFAVLQ 180 (545)
T ss_pred ceEEEEeeccccCCccccccccCccccccceeeeeccCcccccccCCCCccchHhhhccccCcccccccceeccchhhcC
Confidence 99999999999999876433222111111 1111 1110 001122 01
Q ss_pred CCCCCCCHHHHHHHHHHHH-HHHHHhCCCeEEEcCccccc
Q psy9001 1091 RLFNYSEIEVLRFLLSNLR-WYLEEYQFDGFRFDGVTSML 1129 (1351)
Q Consensus 1091 ~dlN~~np~Vr~~lid~l~-yWl~eygVDGFRfD~a~~m~ 1129 (1351)
.+||+++|+|++.|.++++ +|++ +||||||+|++.++.
T Consensus 181 pDln~~n~~V~~~~~~~l~~~~~~-~gvdGfRiD~v~~~~ 219 (545)
T KOG0471|consen 181 PDLNYENPDVRKAIKEWLRDFWLE-KGVDGFRIDAVKGYA 219 (545)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhh-cCCCeEEEEcccccc
Confidence 2899999999999999999 7766 699999999999884
No 71
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=99.73 E-value=2.1e-17 Score=207.80 Aligned_cols=172 Identities=17% Similarity=0.241 Sum_probs=126.7
Q ss_pred CCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccch
Q psy9001 195 CASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDK 274 (1351)
Q Consensus 195 ~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~ 274 (1351)
-+||.+++++ ||||++||||+ |||+|||+ . ..+| +|||+++||+
T Consensus 12 ~~tf~~~~~~-L~YL~~LGv~~----V~lsPi~~--------------------a---~~gs----~hGYdv~D~~---- 55 (825)
T TIGR02401 12 GFTFDDAAAL-LPYLKSLGVSH----LYLSPILT--------------------A---VPGS----THGYDVVDHS---- 55 (825)
T ss_pred CCCHHHHHHh-hHHHHHcCCCE----EEeCcCcc--------------------C---CCCC----CCCCCCCCCC----
Confidence 4799999988 99999999999 99999663 1 1222 4999999999
Q ss_pred hhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccC---CcC
Q psy9001 275 EMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLD 351 (1351)
Q Consensus 275 e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~---~~~ 351 (1351)
+++ |.+|+.++|++||++||++||+||||+|+||++.+ +.|
T Consensus 56 -----------------~id-------------------p~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~a~~~~~n~w 99 (825)
T TIGR02401 56 -----------------EIN-------------------PELGGEEGLRRLSEAARARGLGLIVDIVPNHMAVHLEQNPW 99 (825)
T ss_pred -----------------CcC-------------------CCCCCHHHHHHHHHHHHHCCCEEEEEecccccccccccChH
Confidence 666 99999999999999999999999999999999976 221
Q ss_pred CcccC-CCCCC-------------------------------------------------cCccc----CCCC-------
Q psy9001 352 GLNEF-DGTQA-------------------------------------------------CFFHD----GPRG------- 370 (1351)
Q Consensus 352 ~~~~f-~g~~~-------------------------------------------------~yy~~----~~~~------- 370 (1351)
..... .|..+ .||.. .+..
T Consensus 100 f~dvl~~g~~S~y~~~Fdidw~~~~~~gkvllP~Lg~~y~~~l~~g~l~l~~d~~~~~~l~y~~~~~Pi~p~ty~~il~~ 179 (825)
T TIGR02401 100 WWDVLKNGPSSAYAEYFDIDWDPLGGDGKLLLPILGDQYGAVLDRGEIKLRFDGDGTLALRYYDHRLPLAPGTLPELEVL 179 (825)
T ss_pred HHHHHHhCCCCCccCceEEeCCCCCCCCceeecccCchhhhHHhcCceeeeecCCCceeEEecCccCCcCccchhhhhhh
Confidence 11000 01111 02221 1000
Q ss_pred -----CC--------------CCCC----------------CccCCCCCHHHHHHHHHHHHHHHHHcCCCcccccccccc
Q psy9001 371 -----TH--------------PLWD----------------SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM 415 (1351)
Q Consensus 371 -----~~--------------~~w~----------------~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~ 415 (1351)
.. ..|- -..++.++|+|.+.....+..|+++..|||+|+|.+..+
T Consensus 180 ~~~~~~~~~l~~ll~~Q~yRL~~Wr~a~~~inYRrFf~i~~L~~lr~E~~~Vf~~~h~~i~~lv~~g~vdGlRIDh~dGL 259 (825)
T TIGR02401 180 EDVPGDGDALKKLLERQHYRLTWWRVAAGEINYRRFFDINDLAGVRVEDPAVFDATHRLVLELVAEGLVDGLRIDHIDGL 259 (825)
T ss_pred ccccCChhhHHHHHHHHHHHhhhhhccccccCcccccCccccccccCCCHHHHHHHHHHHHHHHHcCCCceEEecccccc
Confidence 00 1232 135677899999999999999999888999999998876
Q ss_pred ccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEE
Q psy9001 416 LYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAE 465 (1351)
Q Consensus 416 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE 465 (1351)
.++-.||+.+++.+ .|+..++.|
T Consensus 260 ------------------------~dP~~Yl~rLr~~~---~~~~yivvE 282 (825)
T TIGR02401 260 ------------------------ADPEGYLRRLRELV---GPARYLVVE 282 (825)
T ss_pred ------------------------CChHHHHHHHHHhc---CCCceEEEE
Confidence 13567899998653 446788888
No 72
>smart00642 Aamy Alpha-amylase domain.
Probab=99.70 E-value=3.2e-17 Score=173.61 Aligned_cols=95 Identities=23% Similarity=0.281 Sum_probs=79.9
Q ss_pred EEecCCcc--CCCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCcc
Q psy9001 183 ESHVGICT--QEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQA 260 (1351)
Q Consensus 183 E~hvr~ft--~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~ 260 (1351)
|+.++.|. .....|+|++++++ |+||++||||+ |||+|+|+ . +.. ...
T Consensus 1 qi~~~~F~~~~~~~~G~~~gi~~~-l~yl~~lG~~~----I~l~Pi~~--------------------~--~~~---~~~ 50 (166)
T smart00642 1 QIYPDRFADGNGDGGGDLQGIIEK-LDYLKDLGVTA----IWLSPIFE--------------------S--PQG---YPS 50 (166)
T ss_pred CeeeccccCCCCCCCcCHHHHHHH-HHHHHHCCCCE----EEECccee--------------------C--CCC---CCC
Confidence 35567773 44568999999999 99999999999 99999553 2 111 124
Q ss_pred ccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q psy9001 261 LVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDV 340 (1351)
Q Consensus 261 ~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDv 340 (1351)
+|||++.+|+ +++ |+||+++||++||++||++||+||||+
T Consensus 51 ~~gY~~~d~~---------------------~i~-------------------~~~Gt~~d~~~lv~~~h~~Gi~vilD~ 90 (166)
T smart00642 51 YHGYDISDYK---------------------QID-------------------PRFGTMEDFKELVDAAHARGIKVILDV 90 (166)
T ss_pred CCCcCccccC---------------------CCC-------------------cccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 5999999999 666 899999999999999999999999999
Q ss_pred ecccccc
Q psy9001 341 VHSHASK 347 (1351)
Q Consensus 341 V~NH~~~ 347 (1351)
|+||++.
T Consensus 91 V~NH~~~ 97 (166)
T smart00642 91 VINHTSD 97 (166)
T ss_pred CCCCCCC
Confidence 9999988
No 73
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=99.68 E-value=5.4e-16 Score=183.75 Aligned_cols=329 Identities=20% Similarity=0.228 Sum_probs=210.6
Q ss_pred ccccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeeccCCcceEEecCCC-CccceeeeeeCCCCC-CC
Q psy9001 88 REEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATYVTEPPV-VGHAYEQRIWNPKPQ-DK 165 (1351)
Q Consensus 88 ~~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPyA~~~~~~~~-~~~~~~~~~~~p~~~-~~ 165 (1351)
+...|+++.+.-.|-+ +.|...|+ +...|+.|..+..+.+|+...+.||.|.++.-.-- ..-+||......... ..
T Consensus 81 R~~~~L~~qgey~WgV-v~GlraGt-r~q~GsfYwLry~d~~~~~~~I~DpLaySlPyGvfaPAElYDl~~lq~~RaD~~ 158 (811)
T PF14872_consen 81 RDRLPLERQGEYHWGV-VAGLRAGT-RDQAGSFYWLRYRDQDGEVQIIRDPLAYSLPYGVFAPAELYDLERLQRRRADLD 158 (811)
T ss_pred EEEEeeccccceeeeh-hhccCCCC-cccccceEEEEEccCCCCeEEecccccccCcccccChHHhhchHhHhhhhhhHH
Confidence 3456777777778877 77899995 88899999999998889988999999998833211 112333211111000 00
Q ss_pred -CccC------CCCCCCCCCceEEEEecCCccCCCCCCCHHHHHHhhhHHHH---------------HcCCCcCceeEEE
Q psy9001 166 -HKWT------SSKPKKPDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIV---------------KQGMAIPDKWIEL 223 (1351)
Q Consensus 166 -~~w~------~~~p~~~~~~vIYE~hvr~ft~~~~~G~~~gi~~~~L~yLk---------------~LGvt~~~~~I~L 223 (1351)
|.-. +.-+....+..|.|+||+..|++ ||+.|+++- -..|. =.|+++ |+|
T Consensus 159 Yf~~~~a~~~~~~~~rv~~P~nILQiHv~TAsp~---GtlaGLT~i-yqria~K~~~g~pLtp~E~ny~GYDA----vQL 230 (811)
T PF14872_consen 159 YFEATGAADPSDGIPRVPAPRNILQIHVGTASPE---GTLAGLTRI-YQRIADKLAAGEPLTPAEENYVGYDA----VQL 230 (811)
T ss_pred HHHhhccccCCCCCcccCCCceeEEEecCCCCCC---cchHHHHHH-HHHHHHHHhcCCCCChhHHhcccccc----eee
Confidence 0000 11123467899999999999887 788888762 33332 269999 999
Q ss_pred eecccccccCcc----ceEEEcccccccc-----cccccc-------CCCCccccCcccccccccchhhhcccccCCCCc
Q psy9001 224 LKKFKDEDWNMG----NIVHTLTNRRYME-----KTVAYA-------ESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPS 287 (1351)
Q Consensus 224 ~Pif~~~~~~~~----~ii~~~~~~~~~e-----~~~~~~-------~s~~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~ 287 (1351)
|||=+..++..+ .-...+......+ .++... .-.+..||||++.= -||.++||+
T Consensus 231 LPiEPtieyr~e~~~~h~Ff~~~~~d~~~~~~~~~~~~~~~~v~v~L~kPdtqNWGYDv~I----------~GsaAtNPa 300 (811)
T PF14872_consen 231 LPIEPTIEYRAENEPGHEFFSIRPEDEDELDPETEGVHEDGDVTVTLRKPDTQNWGYDVVI----------LGSAATNPA 300 (811)
T ss_pred eccCCcceeccccCCCCceeeecccccccccccccccccCceEEEEecCCCccccCcceee----------eccCCCCHH
Confidence 996544333322 1111111000000 000000 01245789999843 457777777
Q ss_pred hhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHH---cCCEEEEEeeccccccCCcCCcccCCCCCCcCc
Q psy9001 288 LIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHK---AGLYVLLDVVHSHASKNVLDGLNEFDGTQACFF 364 (1351)
Q Consensus 288 ~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~---~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy 364 (1351)
+ . .-++++|+-.||..||. ..|+||+|+||.|...+...-+. ..|+
T Consensus 301 l----L---------------------~TlRPDElVdfiatLHnFp~gPIqvIyDlVyGHADNQ~~~LLn------~~fl 349 (811)
T PF14872_consen 301 L----L---------------------ETLRPDELVDFIATLHNFPTGPIQVIYDLVYGHADNQALDLLN------RRFL 349 (811)
T ss_pred H----H---------------------hcCCcHHHHHHHHHHhcCCCCCeEEEEeeecccccchhhHhhh------hhhc
Confidence 4 1 12579999999999998 56999999999999877432221 2222
Q ss_pred ccCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHH
Q psy9001 365 HDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALI 444 (1351)
Q Consensus 365 ~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 444 (1351)
. ++ +=-|.++|+.+|.||..|++.-|.=++ +|+||.|+|.+...-+. +...+.+..+. .
T Consensus 350 k-GP-----nMYGQdlnhq~P~VRAILLEmQRRK~n-~GaDGIRVDGgQDFk~f-------------nplt~~ve~DD-~ 408 (811)
T PF14872_consen 350 K-GP-----NMYGQDLNHQNPVVRAILLEMQRRKIN-TGADGIRVDGGQDFKFF-------------NPLTGRVEYDD-A 408 (811)
T ss_pred c-CC-----ccccccccccChHHHHHHHHHHHhhcc-cCCceeEecccccceee-------------cccccccccch-H
Confidence 2 11 122457999999999999999999988 99999999987644221 22223332222 5
Q ss_pred HHHHHHHHHHhhCCC---eEEEEEcCCCCCCcccccccCCCCCCCcCCcCCCCCCCcHHHHHHHHHHhh
Q psy9001 445 YLMVANKFLHDKYPE---IITIAEDVSGMPASCRPVTEGGTGFDYRLEIRPDMSDMTVGTFDAAMNTTE 510 (1351)
Q Consensus 445 f~~~~~~~v~~~~P~---~~~iaE~~~~~p~~~~~~~~gg~gfd~~~~~~~d~~~~sl~~f~k~L~~Lr 510 (1351)
|+..|.+.+..+-+. .++|-|+...||.- ..+..+-||+||.++
T Consensus 409 YL~~M~dvvQ~I~~~~r~~f~IfEDGRPWP~e----------------------gWE~~StYr~lie~~ 455 (811)
T PF14872_consen 409 YLLAMSDVVQEIGGARRLPFTIFEDGRPWPQE----------------------GWEEISTYRDLIELR 455 (811)
T ss_pred HHHHHHHHHhhccccceeEEEEecCCCcCCcc----------------------chHHHHHHHHHHHhC
Confidence 889999998877653 57888876666542 234567799999876
No 74
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=99.66 E-value=2.9e-16 Score=152.18 Aligned_cols=92 Identities=35% Similarity=0.671 Sum_probs=81.8
Q ss_pred ccCceeEEE-----EEEEEEEeecCCCCccccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeeccCCc
Q psy9001 65 CHKAGLLCF-----MHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPW 139 (1351)
Q Consensus 65 ~~~~gv~F~-----A~~V~LvGDFN~Wd~~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPy 139 (1351)
+..+|++|+ |++|+|+||||+|+...++|+|.++|+|+++||++..|.+.++||++|||+|+..+|+..+++|||
T Consensus 2 ~~~~g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~~~DPy 81 (99)
T cd02854 2 QEDGGVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWIDRIPAW 81 (99)
T ss_pred cCCCeEEEEEECCCCCEEEEEccCCCCCCcCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEEEcCcc
Confidence 456799999 999999999999998889999988999999999988887889999999999998889999999999
Q ss_pred ceEEecCCCCccceeeee
Q psy9001 140 ATYVTEPPVVGHAYEQRI 157 (1351)
Q Consensus 140 A~~~~~~~~~~~~~~~~~ 157 (1351)
|++++.++. ...+++++
T Consensus 82 A~~~~~~~~-~~~~~~~~ 98 (99)
T cd02854 82 IKYVTQDKE-TALYDGVF 98 (99)
T ss_pred eeEEEeCCC-CcceeeEE
Confidence 999999885 33455544
No 75
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=99.59 E-value=7.8e-15 Score=184.87 Aligned_cols=159 Identities=19% Similarity=0.244 Sum_probs=111.9
Q ss_pred ccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCc--cccCc-----CCCCCCCc----------
Q psy9001 1014 EQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNV--LDGLN-----EFDGTQAC---------- 1075 (1351)
Q Consensus 1014 ~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~--~~~l~-----~~dg~~~~---------- 1075 (1351)
++||| ++||+.|||+|||.++|++||++||++||+||||+|+||++.+. ..++. ...+....
T Consensus 45 s~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~a~~~~~n~wf~dvl~~g~~S~y~~~Fdidw~~~~ 124 (825)
T TIGR02401 45 STHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNHMAVHLEQNPWWWDVLKNGPSSAYAEYFDIDWDPLG 124 (825)
T ss_pred CCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccccccccChHHHHHHHhCCCCCccCceEEeCCCCC
Confidence 56999 99999999999999999999999999999999999999999762 11111 00111112
Q ss_pred ------------------------------------cccCC----CCC------------C--------------CCCCC
Q psy9001 1076 ------------------------------------FFHDG----PRG------------T--------------HPLWD 1089 (1351)
Q Consensus 1076 ------------------------------------yf~~~----~~g------------~--------------~~~w~ 1089 (1351)
||+.. +.. . ...|-
T Consensus 125 ~~gkvllP~Lg~~y~~~l~~g~l~l~~d~~~~~~l~y~~~~~Pi~p~ty~~il~~~~~~~~~~~l~~ll~~Q~yRL~~Wr 204 (825)
T TIGR02401 125 GDGKLLLPILGDQYGAVLDRGEIKLRFDGDGTLALRYYDHRLPLAPGTLPELEVLEDVPGDGDALKKLLERQHYRLTWWR 204 (825)
T ss_pred CCCceeecccCchhhhHHhcCceeeeecCCCceeEEecCccCCcCccchhhhhhhccccCChhhHHHHHHHHHHHhhhhh
Confidence 22210 000 0 00231
Q ss_pred ----------------CCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCCh
Q psy9001 1090 ----------------SRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDT 1153 (1351)
Q Consensus 1090 ----------------~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~ 1153 (1351)
-..++.++|+|.++....+..|+++.-|||+|+|.+..+ .
T Consensus 205 ~a~~~inYRrFf~i~~L~~lr~E~~~Vf~~~h~~i~~lv~~g~vdGlRIDh~dGL------------------------~ 260 (825)
T TIGR02401 205 VAAGEINYRRFFDINDLAGVRVEDPAVFDATHRLVLELVAEGLVDGLRIDHIDGL------------------------A 260 (825)
T ss_pred ccccccCcccccCccccccccCCCHHHHHHHHHHHHHHHHcCCCceEEecccccc------------------------C
Confidence 125788999999999999999999977999999999877 2
Q ss_pred hHHHHHHHHHHHHHhhCCCeEEEEc-cCCCCCCcccccc-cCCccccc
Q psy9001 1154 DALIYLMVANKFLHDKYPEIITIAE-DVSGMPASCRPVT-EGGTGFDY 1199 (1351)
Q Consensus 1154 ~~~~fl~~~~~~l~~~~Pd~ilIaE-~~~~~p~~~~p~~-~gg~GFdy 1199 (1351)
++-.||+.+++.+ .|+.+++.| .+.....+...|. +|..|+++
T Consensus 261 dP~~Yl~rLr~~~---~~~~yivvEKIl~~~E~Lp~~W~v~GTtGYdf 305 (825)
T TIGR02401 261 DPEGYLRRLRELV---GPARYLVVEKILAPGEHLPADWPVDGTTGYDF 305 (825)
T ss_pred ChHHHHHHHHHhc---CCCceEEEEEeccCCCcCCCCCCcCcccCChh
Confidence 3667888887553 456788888 6655555544443 34457664
No 76
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=99.57 E-value=1.1e-14 Score=141.29 Aligned_cols=95 Identities=27% Similarity=0.519 Sum_probs=78.4
Q ss_pred cCCcEEEEeecCCccEEEEEec-chhhhHHHhhccccccccccccccccCCccccCCCCCCCCCCcccccccccccCCCC
Q psy9001 703 ADNSVRCFEWAPSAQQLYLTGY-NAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPASIHIPELHKLLERDPY 781 (1351)
Q Consensus 703 ~~~~~~~~~WaP~A~~v~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1351)
++++++||+|||.|++|+|+|+ |+| +
T Consensus 3 ~~~g~~FrvwAP~A~~V~l~GdFn~W---------------------------------------------------~-- 29 (99)
T cd02854 3 EDGGVTYREWAPNAEEVYLIGDFNNW---------------------------------------------------D-- 29 (99)
T ss_pred CCCeEEEEEECCCCCEEEEEccCCCC---------------------------------------------------C--
Confidence 4667999999999999999994 553 1
Q ss_pred CCcccccccc-ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecCCceeeEEEecCcceEEEecCCC
Q psy9001 782 LNPYQYEMKR-RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRYGLMVNFLEQLSPWATYVTEPPV 860 (1351)
Q Consensus 782 ~~~~~~~m~~-~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~dPya~~v~~~~~ 860 (1351)
+..++|++ +.|+| +++|+++++|.+.++||++|+|+|+..+| ++.+++||||++++++++
T Consensus 30 --~~~~~m~k~~~G~W--------------~~~i~~~~~~~~~~~~g~~Yky~i~~~~G---~~~~~~DPyA~~~~~~~~ 90 (99)
T cd02854 30 --RNAHPLKKDEFGVW--------------EITIPPNEDGSPAIPHGSKIKVRMVTPSG---EWIDRIPAWIKYVTQDKE 90 (99)
T ss_pred --CcCcccEECCCCEE--------------EEEECCcccccccCCCCCEEEEEEEeCCC---CEEEEcCcceeEEEeCCC
Confidence 22356865 59999 99999998888889999999999999888 799999999999998875
Q ss_pred CCeeeeeeee
Q psy9001 861 VGHAYEQRIW 870 (1351)
Q Consensus 861 ~~~~~d~~~~ 870 (1351)
+..+++.+|
T Consensus 91 -~~~~~~~~~ 99 (99)
T cd02854 91 -TALYDGVFW 99 (99)
T ss_pred -CcceeeEEC
Confidence 346776554
No 77
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=99.37 E-value=1.1e-12 Score=175.22 Aligned_cols=93 Identities=17% Similarity=0.191 Sum_probs=79.8
Q ss_pred CceEEEEecCCccCCCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCC
Q psy9001 178 NLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESH 257 (1351)
Q Consensus 178 ~~vIYE~hvr~ft~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~ 257 (1351)
+..+|-++... .++|.+++++ ||||++||||+ |||+|||+ . ..+|
T Consensus 743 P~atyrlq~~~------~~tf~~~~~~-l~Yl~~LGv~~----i~lsPi~~--------------------a---~~gs- 787 (1693)
T PRK14507 743 PRATYRLQFHK------DFTFADAEAI-LPYLAALGISH----VYASPILK--------------------A---RPGS- 787 (1693)
T ss_pred cceeEEEEeCC------CCCHHHHHHH-hHHHHHcCCCE----EEECCCcC--------------------C---CCCC-
Confidence 56688887643 4799999998 99999999999 99999664 1 1222
Q ss_pred CccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEE
Q psy9001 258 DQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVL 337 (1351)
Q Consensus 258 ~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VI 337 (1351)
+|||+++||+ +++ |.+|+.++|++||++||++||+||
T Consensus 788 ---~hGYdv~D~~---------------------~id-------------------p~lG~~edf~~Lv~~ah~~Gi~vi 824 (1693)
T PRK14507 788 ---THGYDIVDHS---------------------QIN-------------------PEIGGEEGFERFCAALKAHGLGQL 824 (1693)
T ss_pred ---CCCCCCCCCC---------------------ccC-------------------cccCCHHHHHHHHHHHHHCCCEEE
Confidence 4999999999 777 999999999999999999999999
Q ss_pred EEeeccccccC
Q psy9001 338 LDVVHSHASKN 348 (1351)
Q Consensus 338 LDvV~NH~~~~ 348 (1351)
||+|+||++.+
T Consensus 825 lDiV~NH~~~~ 835 (1693)
T PRK14507 825 LDIVPNHMGVG 835 (1693)
T ss_pred EEecccccCCC
Confidence 99999999953
No 78
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=99.35 E-value=1.2e-12 Score=165.99 Aligned_cols=83 Identities=19% Similarity=0.271 Sum_probs=73.0
Q ss_pred CCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccch
Q psy9001 195 CASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDK 274 (1351)
Q Consensus 195 ~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~ 274 (1351)
-++|++++++ ||||++||||+ |||+|||+ . ..+| +|||++.||+
T Consensus 16 ~~tf~~~~~~-l~YL~~LGis~----IyLsPi~~--------------------a---~~gs----~hGYdv~D~~---- 59 (879)
T PRK14511 16 GFTFDDAAEL-VPYFADLGVSH----LYLSPILA--------------------A---RPGS----THGYDVVDHT---- 59 (879)
T ss_pred CCCHHHHHHH-hHHHHHcCCCE----EEECcCcc--------------------C---CCCC----CCCCCcCCCC----
Confidence 3699999988 99999999999 99999664 1 1222 4999999999
Q ss_pred hhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCC
Q psy9001 275 EMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNV 349 (1351)
Q Consensus 275 e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~ 349 (1351)
+++ |.+|+.++|++||++||++||+||||+|+||++.++
T Consensus 60 -----------------~id-------------------p~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~~~~~ 98 (879)
T PRK14511 60 -----------------RIN-------------------PELGGEEGLRRLAAALRAHGMGLILDIVPNHMAVGG 98 (879)
T ss_pred -----------------CcC-------------------CCCCCHHHHHHHHHHHHHCCCEEEEEeccccccCcC
Confidence 666 999999999999999999999999999999999865
No 79
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.35 E-value=3.4e-12 Score=124.24 Aligned_cols=97 Identities=22% Similarity=0.255 Sum_probs=75.1
Q ss_pred ccceeecCCcEEEEeecCCccEEEEEecchhhhHHHhhccccccccccccccccCCccccCCCCCCCCCCcccccccccc
Q psy9001 697 YGIHVQADNSVRCFEWAPSAQQLYLTGYNAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPASIHIPELHKLL 776 (1351)
Q Consensus 697 ~G~~~~~~~~~~~~~WaP~A~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 (1351)
+|+++.+++ ++|++|||.|++|.|.+|++++.
T Consensus 1 lGa~~~~~~-~~F~vwAP~A~~V~L~l~~~~~~----------------------------------------------- 32 (100)
T cd02860 1 LGAVYTPEK-TTFRLWAPTAQSVKLLLYDKDDQ----------------------------------------------- 32 (100)
T ss_pred CCCEEeCCC-EEEEEECCCCcEEEEEEEcCCCC-----------------------------------------------
Confidence 589988755 99999999999999999643100
Q ss_pred cCCCCCCcccccccc-ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecCCceeeEEEecCcceEEE
Q psy9001 777 ERDPYLNPYQYEMKR-RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRYGLMVNFLEQLSPWATYV 855 (1351)
Q Consensus 777 ~~~~~~~~~~~~m~~-~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~dPya~~v 855 (1351)
.. ...+++|.+ +.|+| +++++++.+| ..|+|+|...++ ...+.+||||+++
T Consensus 33 -~~---~~~~~~m~~~~~gvw--------------~~~v~~~~~g-------~~Y~y~i~~~~~---~~~~~~DPyA~~~ 84 (100)
T cd02860 33 -DK---VLETVQMKRGENGVW--------------SVTLDGDLEG-------YYYLYEVKVYKG---ETNEVVDPYAKAL 84 (100)
T ss_pred -CC---cceeEeeecCCCCEE--------------EEEeCCccCC-------cEEEEEEEEece---EEEEEcCcccEeE
Confidence 00 012467865 68999 8888877666 567999987655 5779999999999
Q ss_pred ecCCCCCeeeeeee
Q psy9001 856 TEPPVVGHAYEQRI 869 (1351)
Q Consensus 856 ~~~~~~~~~~d~~~ 869 (1351)
+.|+++|+|+|...
T Consensus 85 ~~~~~~s~i~d~~~ 98 (100)
T cd02860 85 SANGERSVDLDDKK 98 (100)
T ss_pred eeCCCceEECChHH
Confidence 99999999999844
No 80
>KOG2212|consensus
Probab=99.34 E-value=1e-11 Score=138.64 Aligned_cols=106 Identities=21% Similarity=0.340 Sum_probs=80.1
Q ss_pred cccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCcc-------------ccCcCCCCCCCcc--ccCC-C---C
Q psy9001 1022 ECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVL-------------DGLNEFDGTQACF--FHDG-P---R 1082 (1351)
Q Consensus 1022 y~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~-------------~~l~~~dg~~~~y--f~~~-~---~ 1082 (1351)
-|.++.|-|..+||..||+.|.+-|.|+++|+|+||++.... .+..+|.|.+..- |+.. + .
T Consensus 84 SYKL~tRSGNE~eF~dMV~RCN~VGVRiyVDvv~NHM~g~~~~G~~vGt~Gs~~~p~s~SfPGVPYs~~DFn~~kc~~~~ 163 (504)
T KOG2212|consen 84 SYKLCTRSGNEDEFRDMVTRCNNVGVRIYVDAVINHMCGNAVSGGTVGTCGSYFNPGSRSFPGVPYSGWDFNDGKCKTGS 163 (504)
T ss_pred eEEeeccCCCHHHHHHHHHHhhccceEEEehhhhhhhccccccCCccccccCccCCCCCCCCCCCcccccCCCcccCCCc
Confidence 478888999999999999999999999999999999985321 1223444443211 2221 1 1
Q ss_pred CCCCCCCC------------CCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccc
Q psy9001 1083 GTHPLWDS------------RLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSM 1128 (1351)
Q Consensus 1083 g~~~~w~~------------~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m 1128 (1351)
....+|.. .|||..+.-||..|++-|.+.++ +||-|||.|+++||
T Consensus 164 ~~i~~~Nda~~V~~C~LVGL~DL~Q~s~~Vr~Kive~L~hLid-lGVAGFRvDAsKHM 220 (504)
T KOG2212|consen 164 GDIENYNDATQVRDCRLVGLLDLAQGSDYVRSKIAEYLNHLID-IGVAGFRVDASKHM 220 (504)
T ss_pred cccccccchhhhhcceEeecchhhhcchHHHHHHHHHHHHHHH-hccceeeechhhcc
Confidence 22334421 28999999999999999999998 59999999999999
No 81
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=99.31 E-value=4e-12 Score=122.33 Aligned_cols=88 Identities=36% Similarity=0.663 Sum_probs=72.6
Q ss_pred ceEeecCCCcEEEEEeCc-----eEEEEeCCCCCcccccccccccCcccccccccccccccceEeeeccCCceEEEccCC
Q psy9001 522 YVSTKHEGDKVIIFERAG-----LLFAFNFNGTQSFTDYRYCSTQSYSTHNTWTWRGSISKLHRVGVEQAGKYKVVLDSD 596 (1351)
Q Consensus 522 ~~~~~~~~~~Vlaf~R~~-----ll~v~Nf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g~~~~vlnsD 596 (1351)
|+...+++++|+||.|.. +|||+||+++..+.+|+ +++|.+|+|+++||||
T Consensus 1 Wi~~~d~~~~v~af~R~~~~~~~~lvv~Nf~~~~~~~~~~------------------------~~~p~~g~y~~vlnsd 56 (95)
T PF02806_consen 1 WIDHDDNENNVIAFERKDKGDDRVLVVFNFSPEAVYEDYR------------------------IGVPEAGRYKEVLNSD 56 (95)
T ss_dssp EEEEEEESSSEEEEEETTTETTEEEEEEESSSS-EEEEEE------------------------ECSSSSEEEEETTTTT
T ss_pred CcccccCCCCEEEEEEcCCCCCEEEEEEECCCcccceeEE------------------------eCCCCcceeeEEeCCC
Confidence 345567789999999963 99999999986677777 9999999999999999
Q ss_pred CCccCcccccCCCCceeeeecccCCcccEEEEEeCCcEEEEEEE
Q psy9001 597 CSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGLILTT 640 (1351)
Q Consensus 597 ~~~ygG~~~~~~~~~~~~~~~~~~g~~~si~l~LPpls~~vl~~ 640 (1351)
+..|||++..+.. .++ .+++|+ ++|+|||++++||+.
T Consensus 57 ~~~~~g~~~~~~~-~v~---~~~~g~---~~~~lp~~s~~vl~~ 93 (95)
T PF02806_consen 57 DEEYGGSGKGNSG-EVT---VDSNGR---ITVTLPPYSALVLKL 93 (95)
T ss_dssp CEEEEESSCSETS-EEE---EETTSE---EEEEESTTEEEEEEE
T ss_pred ccEECCcccccCc-eEE---EeeCCE---EEEEECCCEEEEEEE
Confidence 9999999875443 233 456665 999999999999986
No 82
>smart00642 Aamy Alpha-amylase domain.
Probab=99.27 E-value=2.4e-12 Score=136.60 Aligned_cols=47 Identities=40% Similarity=0.530 Sum_probs=45.3
Q ss_pred ccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccC
Q psy9001 1014 EQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASK 1060 (1351)
Q Consensus 1014 ~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~ 1060 (1351)
.++|| ++||+.++|+|||++||++||++||++||+||||+|+||++.
T Consensus 50 ~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 50 SYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred CCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 56889 899999999999999999999999999999999999999998
No 83
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=99.21 E-value=7e-10 Score=132.77 Aligned_cols=296 Identities=20% Similarity=0.224 Sum_probs=161.7
Q ss_pred CCCCeEEEEEecCCceeeEEEecCcceEEEecC-CCCCeeeeeeeeCCCCCCCCccc-------cCC-CCCCCCceEEEe
Q psy9001 826 YLNPYQYEMKRRYGLMVNFLEQLSPWATYVTEP-PVVGHAYEQRIWNPKPQDKHKWT-------SSK-PKKPENLKIYES 896 (1351)
Q Consensus 826 ~~~~y~~~~~~~~~~~~~~~~~~dPya~~v~~~-~~~~~~~d~~~~~p~~~~~~~w~-------~~~-p~~p~d~iIYE~ 896 (1351)
-|+.|-.+-...+| ++.-..||-|-++--. -.-.-+||...-.+...+.-=|+ .+. |..|....|.++
T Consensus 108 ~GsfYwLry~d~~~---~~~~I~DpLaySlPyGvfaPAElYDl~~lq~~RaD~~Yf~~~~a~~~~~~~~rv~~P~nILQi 184 (811)
T PF14872_consen 108 AGSFYWLRYRDQDG---EVQIIRDPLAYSLPYGVFAPAELYDLERLQRRRADLDYFEATGAADPSDGIPRVPAPRNILQI 184 (811)
T ss_pred ccceEEEEEccCCC---CeEEecccccccCcccccChHHhhchHhHhhhhhhHHHHHhhccccCCCCCcccCCCceeEEE
Confidence 45777777766667 6777789988776421 00123455533222111100011 112 335678889999
Q ss_pred ecCCcccCCCcccccccccccccce-eccCCCccccccccccccc-----CCceEEEecCCCCCCCCcccccC-ccceec
Q psy9001 897 HVGICTQEQKCASYEDFVRVVIPRI-VKQGDFNNWNREEFAYKKL-----DFGKWELVLPPNPDGDFNNWNRE-EFAYKK 969 (1351)
Q Consensus 897 HV~~~s~~~~~gty~~f~~~~lp~i-k~lG~fn~~~~~~~~l~~l-----g~giwel~ip~~~~g~~Y~~~~~-~~~y~~ 969 (1351)
||+..|++ ||..++++.- .+| .++. + ..+|... |-..+||+- +.+--.|.=..+ ++.+
T Consensus 185 Hv~TAsp~---GtlaGLT~iy-qria~K~~--~-----g~pLtp~E~ny~GYDAvQLLP--iEPtieyr~e~~~~h~F-- 249 (811)
T PF14872_consen 185 HVGTASPE---GTLAGLTRIY-QRIADKLA--A-----GEPLTPAEENYVGYDAVQLLP--IEPTIEYRAENEPGHEF-- 249 (811)
T ss_pred ecCCCCCC---cchHHHHHHH-HHHHHHHh--c-----CCCCChhHHhcccccceeeec--cCCcceeccccCCCCce--
Confidence 99999988 7777766532 111 1111 0 1122221 223466662 222223331111 1111
Q ss_pred CCccceee---ecCCCCCCCccccccCcceeeecccCCCCCCCCCCcccccc---ccccccccCC---CCCHHHHHHHHH
Q psy9001 970 LDFGKWEL---VLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRFGTPEQLKY---LVDECHKAGL---FGTPEQLKYLVD 1040 (1351)
Q Consensus 970 ~d~gy~~~---~~pp~~~~~~~i~d~~~~~l~~~~~~G~~~~~~~sp~~hgY---~~Dy~~idp~---yGt~edfK~LV~ 1040 (1351)
|....+ .+.+.+. +|.....+...-..| .-.++|| +.-.-+.+|. -++|+||-.||.
T Consensus 250 --f~~~~~d~~~~~~~~~---~~~~~~~v~v~L~kP---------dtqNWGYDv~I~GsaAtNPalL~TlRPDElVdfia 315 (811)
T PF14872_consen 250 --FSIRPEDEDELDPETE---GVHEDGDVTVTLRKP---------DTQNWGYDVVILGSAATNPALLETLRPDELVDFIA 315 (811)
T ss_pred --eeeccccccccccccc---ccccCceEEEEecCC---------CccccCcceeeeccCCCCHHHHhcCCcHHHHHHHH
Confidence 111110 0111111 111111111100111 1235666 3444556664 377999999999
Q ss_pred HHHH---cCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCC
Q psy9001 1041 ECHK---AGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQF 1117 (1351)
Q Consensus 1041 ~aH~---~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~yWl~eygV 1117 (1351)
+||. ..|+||+|+||.|+-+....-++. .|+ .++ |--+.++|+.+|.||..|++.-|-=++ +|+
T Consensus 316 tLHnFp~gPIqvIyDlVyGHADNQ~~~LLn~------~fl-kGP-----nMYGQdlnhq~P~VRAILLEmQRRK~n-~Ga 382 (811)
T PF14872_consen 316 TLHNFPTGPIQVIYDLVYGHADNQALDLLNR------RFL-KGP-----NMYGQDLNHQNPVVRAILLEMQRRKIN-TGA 382 (811)
T ss_pred HHhcCCCCCeEEEEeeecccccchhhHhhhh------hhc-cCC-----ccccccccccChHHHHHHHHHHHhhcc-cCC
Confidence 9995 679999999999998876444432 222 222 112457999999999999998887776 699
Q ss_pred CeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCC---eEEEEccC
Q psy9001 1118 DGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPE---IITIAEDV 1180 (1351)
Q Consensus 1118 DGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd---~ilIaE~~ 1180 (1351)
||.|+|++.-..+.+.- + +. -...-.||.++.+.+.++.+. .++|=|+-
T Consensus 383 DGIRVDGgQDFk~fnpl-----t--------~~-ve~DD~YL~~M~dvvQ~I~~~~r~~f~IfEDG 434 (811)
T PF14872_consen 383 DGIRVDGGQDFKFFNPL-----T--------GR-VEYDDAYLLAMSDVVQEIGGARRLPFTIFEDG 434 (811)
T ss_pred ceeEecccccceeeccc-----c--------cc-cccchHHHHHHHHHHhhccccceeEEEEecCC
Confidence 99999999755321110 0 00 112446788888888887653 56788873
No 84
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=99.05 E-value=3.6e-10 Score=106.33 Aligned_cols=81 Identities=25% Similarity=0.395 Sum_probs=59.3
Q ss_pred cccceeecC-CcEEEEeecCCccEEEEEecchhhhHHHhhccccccccccccccccCCccccCCCCCCCCCCcccccccc
Q psy9001 696 KYGIHVQAD-NSVRCFEWAPSAQQLYLTGYNAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPASIHIPELHK 774 (1351)
Q Consensus 696 ~~G~~~~~~-~~~~~~~WaP~A~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 774 (1351)
.+|+++.++ ++++||+|||+|++|+|+++.+. .+
T Consensus 1 plG~~~~~~~~~~~F~vwaP~A~~V~l~~~~~~--------------~~------------------------------- 35 (85)
T PF02922_consen 1 PLGAHYTEDGGGVTFRVWAPNAKSVELVLYFNG--------------SW------------------------------- 35 (85)
T ss_dssp SSEEEEESSCTEEEEEEE-TTESEEEEEEETTT--------------SS-------------------------------
T ss_pred CcCcEEECCCCEEEEEEECCCCCEEEEEEEeee--------------cC-------------------------------
Confidence 489999987 77999999999999999995320 00
Q ss_pred cccCCCCCCccccccc-c-ccccEEeeecccccCCCCceeeecCCccccccCCCC-CCeEEEEEecCCceeeEEEecCcc
Q psy9001 775 LLERDPYLNPYQYEMK-R-RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYL-NPYQYEMKRRYGLMVNFLEQLSPW 851 (1351)
Q Consensus 775 ~~~~~~~~~~~~~~m~-~-~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~~~~~~~~~~~~~~~~~dPy 851 (1351)
...+++|+ + +.|+| +++|+++.+ +| ..|+|+|...+| +..+++|||
T Consensus 36 --------~~~~~~m~~~~~~G~w--------------~~~~~~~~~------~g~~~Y~y~i~~~~g---~~~~~~DPY 84 (85)
T PF02922_consen 36 --------PAEEYPMTRKDDDGVW--------------EVTVPGDLP------PGGYYYKYRIDGDDG---ETPEVVDPY 84 (85)
T ss_dssp --------EEEEEEEEEECTTTEE--------------EEEEEGCGT------TTT-EEEEEEEETTT---EEEEET-TT
T ss_pred --------CCceEEeeecCCCCEE--------------EEEEcCCcC------CCCEEEEEEEEeCCC---cEEEEeCCC
Confidence 12457786 3 59999 777876444 23 368999998887 789999999
Q ss_pred e
Q psy9001 852 A 852 (1351)
Q Consensus 852 a 852 (1351)
|
T Consensus 85 A 85 (85)
T PF02922_consen 85 A 85 (85)
T ss_dssp -
T ss_pred C
Confidence 8
No 85
>KOG2212|consensus
Probab=99.05 E-value=9.5e-10 Score=123.16 Aligned_cols=150 Identities=17% Similarity=0.250 Sum_probs=106.3
Q ss_pred CHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCcccc--Ccccccccccch
Q psy9001 197 SYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALV--GDKTIAFWLMDK 274 (1351)
Q Consensus 197 ~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~w--GY~~~~y~~~~~ 274 (1351)
++.+|+.++-..|.--|+.. ||+.| ++|+ ....+. ..-| -|+|++|-
T Consensus 38 KW~DiA~ECE~FL~p~G~~g----VQVSP--------------------~nEn--~~~~~~-~rPWWeRYQPvSYK---- 86 (504)
T KOG2212|consen 38 KWVDIALECERFLAPKGFGG----VQVSP--------------------PNEN--VAIHNP-FRPWWERYQPVSYK---- 86 (504)
T ss_pred ehHHHHHHHHhhcCcCCcce----eeecC--------------------cchh--hhhcCC-CCCceeecccceEE----
Confidence 68889988888999999999 99999 4443 111110 0113 26666555
Q ss_pred hhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcC---
Q psy9001 275 EMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLD--- 351 (1351)
Q Consensus 275 e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~--- 351 (1351)
++.|-|..+||+.||.+|.+-|+++++|+|+||++.....
T Consensus 87 -------------------------------------L~tRSGNE~eF~dMV~RCN~VGVRiyVDvv~NHM~g~~~~G~~ 129 (504)
T KOG2212|consen 87 -------------------------------------LCTRSGNEDEFRDMVTRCNNVGVRIYVDAVINHMCGNAVSGGT 129 (504)
T ss_pred -------------------------------------eeccCCCHHHHHHHHHHhhccceEEEehhhhhhhccccccCCc
Confidence 3378899999999999999999999999999999842111
Q ss_pred ----CcccCCCCCC----cC----cccCC----CCCCCCCCC------------ccCCCCCHHHHHHHHHHHHHHHHHcC
Q psy9001 352 ----GLNEFDGTQA----CF----FHDGP----RGTHPLWDS------------RLFNYSEIEVLRFLLSNLRWYLDEYQ 403 (1351)
Q Consensus 352 ----~~~~f~g~~~----~y----y~~~~----~~~~~~w~~------------~~ln~~~p~v~~~l~~~l~~W~~e~~ 403 (1351)
|...+++..+ +| |+... .....+|.. .+||-++.-||..|++-|.+.++ .|
T Consensus 130 vGt~Gs~~~p~s~SfPGVPYs~~DFn~~kc~~~~~~i~~~Nda~~V~~C~LVGL~DL~Q~s~~Vr~Kive~L~hLid-lG 208 (504)
T KOG2212|consen 130 VGTCGSYFNPGSRSFPGVPYSGWDFNDGKCKTGSGDIENYNDATQVRDCRLVGLLDLAQGSDYVRSKIAEYLNHLID-IG 208 (504)
T ss_pred cccccCccCCCCCCCCCCCcccccCCCcccCCCccccccccchhhhhcceEeecchhhhcchHHHHHHHHHHHHHHH-hc
Confidence 1122233221 12 22211 122334432 47888999999999999999999 89
Q ss_pred CCcccccccccc
Q psy9001 404 FDGFRFDGVTSM 415 (1351)
Q Consensus 404 vDGfR~D~a~~~ 415 (1351)
|-|||+|++.+|
T Consensus 209 VAGFRvDAsKHM 220 (504)
T KOG2212|consen 209 VAGFRVDASKHM 220 (504)
T ss_pred cceeeechhhcc
Confidence 999999999999
No 86
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.03 E-value=7.2e-10 Score=107.95 Aligned_cols=83 Identities=13% Similarity=0.141 Sum_probs=69.5
Q ss_pred cccCceeEEE-----EEEEEEEeecCCCCc----cccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceee
Q psy9001 64 ECHKAGLLCF-----MHVVCAAGDFNNWNR----EEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLD 134 (1351)
Q Consensus 64 ~~~~~gv~F~-----A~~V~LvGDFN~Wd~----~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~ 134 (1351)
.....|++|+ |++|+|+. |++|+. ..++|.+.++|+|+++|++..+| ..|+|+|++.++....
T Consensus 4 ~~~~~~~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~~~~gvw~~~v~~~~~g-------~~Y~y~i~~~~~~~~~ 75 (100)
T cd02860 4 VYTPEKTTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKRGENGVWSVTLDGDLEG-------YYYLYEVKVYKGETNE 75 (100)
T ss_pred EEeCCCEEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeecCCCCEEEEEeCCccCC-------cEEEEEEEEeceEEEE
Confidence 3345789999 99999987 888861 45899998899999999987655 6999999987677778
Q ss_pred ccCCcceEEecCCCCcccee
Q psy9001 135 RLSPWATYVTEPPVVGHAYE 154 (1351)
Q Consensus 135 ~~DPyA~~~~~~~~~~~~~~ 154 (1351)
++||||++++.+...|+++|
T Consensus 76 ~~DPyA~~~~~~~~~s~i~d 95 (100)
T cd02860 76 VVDPYAKALSANGERSVDLD 95 (100)
T ss_pred EcCcccEeEeeCCCceEECC
Confidence 99999999999998777765
No 87
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=99.00 E-value=4e-10 Score=146.81 Aligned_cols=85 Identities=13% Similarity=0.131 Sum_probs=68.5
Q ss_pred CCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccch
Q psy9001 195 CASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDK 274 (1351)
Q Consensus 195 ~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~ 274 (1351)
.|+|.++.++ |++||+||+|+ |||+|||+ . . .| +..|++.||+
T Consensus 128 mG~~~~w~~~-L~~ik~lGyN~----IhftPI~~--------------------~--G--~S----nS~Ysi~Dyl---- 170 (1464)
T TIGR01531 128 LGPLSEWEPR-LRVAKEKGYNM----IHFTPLQE--------------------L--G--GS----NSCYSLYDQL---- 170 (1464)
T ss_pred cCCHHHHHHH-HHHHHHcCCCE----EEeCCCcc--------------------C--C--CC----CCCccccchh----
Confidence 6999988877 99999999999 99999553 2 1 11 2355555555
Q ss_pred hhhcccccCCCCchhcccccccCCCCccccccccccccCCCC----CCHHHHHHHHHHHHHc-CCEEEEEeeccccccCC
Q psy9001 275 EMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLF----GTPEQLKYLVDECHKA-GLYVLLDVVHSHASKNV 349 (1351)
Q Consensus 275 e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~----G~~~efk~LV~~~H~~-GI~VILDvV~NH~~~~~ 349 (1351)
+|||.+ |+.++|++||+++|++ ||+||+|+|+|||+.++
T Consensus 171 ------------------------------------~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDvV~NHTa~ds 214 (1464)
T TIGR01531 171 ------------------------------------QLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDIVFNHTANNS 214 (1464)
T ss_pred ------------------------------------hcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEeeecccccCC
Confidence 455777 5899999999999997 99999999999999998
Q ss_pred cCC
Q psy9001 350 LDG 352 (1351)
Q Consensus 350 ~~~ 352 (1351)
.|.
T Consensus 215 ~Wl 217 (1464)
T TIGR01531 215 PWL 217 (1464)
T ss_pred HHH
Confidence 654
No 88
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=98.97 E-value=6.6e-10 Score=135.14 Aligned_cols=80 Identities=21% Similarity=0.271 Sum_probs=70.6
Q ss_pred CHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccchhh
Q psy9001 197 SYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEM 276 (1351)
Q Consensus 197 ~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~e~ 276 (1351)
+|.+..+- ||||++|||.| +++.|||. +..|| .||||++|.-
T Consensus 17 tF~~A~~~-l~yl~~LGISh----LY~SPIft-----------------------A~pGS----tHGYDVvD~t------ 58 (889)
T COG3280 17 TFADARAL-LDYLADLGISH----LYLSPIFT-----------------------ARPGS----THGYDVVDPT------ 58 (889)
T ss_pred CHHHHHHh-hHHHHhcCchh----eeccchhh-----------------------cCCCC----CCCccCCCcc------
Confidence 77776654 99999999999 99999885 34455 3999998888
Q ss_pred hcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccC
Q psy9001 277 YTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN 348 (1351)
Q Consensus 277 ~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~ 348 (1351)
.++ |.+|+.+.|..||.++|++||++|+|+|+||++-.
T Consensus 59 ---------------~In-------------------PeLGG~egl~rLvaalk~~GlGlI~DIVPNHMav~ 96 (889)
T COG3280 59 ---------------EIN-------------------PELGGEEGLERLVAALKSRGLGLIVDIVPNHMAVG 96 (889)
T ss_pred ---------------ccC-------------------hhhcChHHHHHHHHHHHhcCCceEEEecccchhcc
Confidence 666 99999999999999999999999999999999976
No 89
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.90 E-value=3.4e-09 Score=103.88 Aligned_cols=88 Identities=14% Similarity=0.217 Sum_probs=62.4
Q ss_pred ccceeecCCcEEEEeecCCccEEEEEecchhhhHHHhhccccccccccccccccCCccccCCCCCCCCCCcccccccccc
Q psy9001 697 YGIHVQADNSVRCFEWAPSAQQLYLTGYNAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPASIHIPELHKLL 776 (1351)
Q Consensus 697 ~G~~~~~~~~~~~~~WaP~A~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 (1351)
+|+.+++++ ++|++|||.|++|.|++|+++
T Consensus 2 lGa~~~~~g-~~F~vwAP~A~~V~L~l~~~~------------------------------------------------- 31 (103)
T cd02856 2 LGATLDGEG-CNFAVHSENATRIELCLFDED------------------------------------------------- 31 (103)
T ss_pred CccEEeCCC-eEEEEECCCCCEEEEEEEeCC-------------------------------------------------
Confidence 799988555 999999999999999995320
Q ss_pred cCCCCCCcccccccc-ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEec----CCc-eeeEEEecCc
Q psy9001 777 ERDPYLNPYQYEMKR-RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRR----YGL-MVNFLEQLSP 850 (1351)
Q Consensus 777 ~~~~~~~~~~~~m~~-~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~----~~~-~~~~~~~~dP 850 (1351)
+ ....++|++ +.|+| ++++++...| ..|+|+|... .|. .....+.+||
T Consensus 32 --~---~~~~~~m~~~~~GvW--------------~~~v~~~~~g-------~~Y~y~i~g~~~p~~~~~~~~~~~~~DP 85 (103)
T cd02856 32 --G---SETRLPLTEEYGGVW--------------HGFLPGIKAG-------QRYGFRVHGPYDPERGLRFNPAKLLLDP 85 (103)
T ss_pred --C---CEEEEEcccccCCEE--------------EEEECCCCCC-------CEEEEEECCccCcccCcccCCCeEEecC
Confidence 0 012356765 48999 8888876665 5679999651 010 0134789999
Q ss_pred ceEEEecCCC
Q psy9001 851 WATYVTEPPV 860 (1351)
Q Consensus 851 ya~~v~~~~~ 860 (1351)
|||+++.+..
T Consensus 86 YA~~~~~~~~ 95 (103)
T cd02856 86 YARALDGPLA 95 (103)
T ss_pred CcceEcCCcc
Confidence 9999987554
No 90
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.88 E-value=3.2e-09 Score=100.39 Aligned_cols=81 Identities=19% Similarity=0.289 Sum_probs=61.3
Q ss_pred cceeecCCcEEEEeecCCccEEEEEecchhhhHHHhhccccccccccccccccCCccccCCCCCCCCCCccccccccccc
Q psy9001 698 GIHVQADNSVRCFEWAPSAQQLYLTGYNAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPASIHIPELHKLLE 777 (1351)
Q Consensus 698 G~~~~~~~~~~~~~WaP~A~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 777 (1351)
|+.++++++++|++|||.|++|.|.++..
T Consensus 1 Ga~~~~~~~~~F~vwAP~A~~V~l~l~~~--------------------------------------------------- 29 (85)
T cd02853 1 GARPLGAGGTRFRLWAPDAKRVTLRLDDG--------------------------------------------------- 29 (85)
T ss_pred CCeEcCCCCEEEEEeCCCCCEEEEEecCC---------------------------------------------------
Confidence 67787766799999999999999998210
Q ss_pred CCCCCCcccccccc-ccccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecCCceeeEEEecCcceEE--
Q psy9001 778 RDPYLNPYQYEMKR-RYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRYGLMVNFLEQLSPWATY-- 854 (1351)
Q Consensus 778 ~~~~~~~~~~~m~~-~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~dPya~~-- 854 (1351)
..++|.+ +.|+| +++++++ .| ..|+|+|. ++ .+++||||++
T Consensus 30 -------~~~~m~~~~~G~W--------------~~~v~~~-~g-------~~Y~y~v~--~~-----~~~~DP~a~~~~ 73 (85)
T cd02853 30 -------EEIPMQRDGDGWF--------------EAEVPGA-AG-------TRYRYRLD--DG-----TPVPDPASRFQP 73 (85)
T ss_pred -------CcccCccCCCcEE--------------EEEeCCC-CC-------CeEEEEEC--CC-----cCCCCCccccCC
Confidence 1245754 58999 8888877 66 45689885 33 5889999999
Q ss_pred EecCCCCCeeee
Q psy9001 855 VTEPPVVGHAYE 866 (1351)
Q Consensus 855 v~~~~~~~~~~d 866 (1351)
+++++. |+++|
T Consensus 74 ~~~~~~-s~v~~ 84 (85)
T cd02853 74 EGVHGP-SQVVD 84 (85)
T ss_pred CCCCCC-eEeeC
Confidence 456763 77776
No 91
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=98.87 E-value=4.6e-09 Score=98.85 Aligned_cols=67 Identities=25% Similarity=0.393 Sum_probs=56.6
Q ss_pred ceeEEE-----EEEEEEEeecCC-CCcccccee-ecCCCeEEEEcCCCCCCCcccCcc-cEEEEEEEecCCceeeccCCc
Q psy9001 68 AGLLCF-----MHVVCAAGDFNN-WNREEFAYK-KLDFGKWELVLPPNPDGSCKLTHL-SQVKLVVRNQHGHLLDRLSPW 139 (1351)
Q Consensus 68 ~gv~F~-----A~~V~LvGDFN~-Wd~~~~~M~-k~~~GvW~~~ip~~~~G~~~~~~g-~~Y~y~i~~~~g~~~~~~DPy 139 (1351)
++++|+ |++|+|+++|++ |....++|+ +.+.|+|+++||+.. .+| .+|+|+|++.+|+...++|||
T Consensus 11 ~~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~~~~G~w~~~~~~~~------~~g~~~Y~y~i~~~~g~~~~~~DPY 84 (85)
T PF02922_consen 11 GGVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRKDDDGVWEVTVPGDL------PPGGYYYKYRIDGDDGETPEVVDPY 84 (85)
T ss_dssp TEEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEECTTTEEEEEEEGCG------TTTT-EEEEEEEETTTEEEEET-TT
T ss_pred CEEEEEEECCCCCEEEEEEEeeecCCCceEEeeecCCCCEEEEEEcCCc------CCCCEEEEEEEEeCCCcEEEEeCCC
Confidence 599999 999999999999 888889999 588999999999532 234 499999998888888999999
Q ss_pred c
Q psy9001 140 A 140 (1351)
Q Consensus 140 A 140 (1351)
|
T Consensus 85 A 85 (85)
T PF02922_consen 85 A 85 (85)
T ss_dssp -
T ss_pred C
Confidence 8
No 92
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=98.87 E-value=1.3e-09 Score=138.84 Aligned_cols=49 Identities=24% Similarity=0.352 Sum_probs=46.8
Q ss_pred ccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCc
Q psy9001 1014 EQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNV 1062 (1351)
Q Consensus 1014 ~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~ 1062 (1351)
++||| ++||+.|||+||+.++|++||++||++||+||||+|+||++.++
T Consensus 49 s~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~~~~~ 98 (879)
T PRK14511 49 STHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNHMAVGG 98 (879)
T ss_pred CCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEeccccccCcC
Confidence 57999 99999999999999999999999999999999999999999864
No 93
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=98.83 E-value=1.9e-08 Score=98.43 Aligned_cols=94 Identities=28% Similarity=0.443 Sum_probs=68.0
Q ss_pred HhhhccccceeecC---CcEEEEeecCCccEEEEEec-chhhhHHHhhccccccccccccccccCCccccCCCCCCCCCC
Q psy9001 691 TTSYNKYGIHVQAD---NSVRCFEWAPSAQQLYLTGY-NAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPAS 766 (1351)
Q Consensus 691 ~~~y~~~G~~~~~~---~~~~~~~WaP~A~~v~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 766 (1351)
...|..+|+|+.++ ++++||+|||.|++|.|+++ |+|+
T Consensus 4 ~~p~~~lG~~~~~~~~~~~~~frv~aP~A~~V~l~~~~~~~~-------------------------------------- 45 (106)
T cd02855 4 ERLYEKLGAHPTEVDGVSGVRFAVWAPNARRVSVVGDFNGWD-------------------------------------- 45 (106)
T ss_pred hhHHHhcCCEEcccCCcCCEEEEEECCCCCEEEEEEECCCCC--------------------------------------
Confidence 45788999998874 66999999999999999982 3310
Q ss_pred cccccccccccCCCCCCcccccccc-c-cccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEecCCceeeE
Q psy9001 767 IHIPELHKLLERDPYLNPYQYEMKR-R-YGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKRRYGLMVNF 844 (1351)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~m~~-~-~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 844 (1351)
....+|++ + .|+| ++.++....+ ..|+|++...+| .+
T Consensus 46 -----------------~~~~~m~~~~~~G~w--------------~~~v~~~~~~-------~~Y~~~v~~~~g---~~ 84 (106)
T cd02855 46 -----------------GRRHPMRRRGDSGVW--------------ELFIPGLGEG-------ELYKYEILGADG---HL 84 (106)
T ss_pred -----------------CcceecEECCCCCEE--------------EEEECCCCCC-------CEEEEEEECCCC---CE
Confidence 01235644 4 8999 7777754333 457899876555 46
Q ss_pred EEecCcceEEEecCCCCCe
Q psy9001 845 LEQLSPWATYVTEPPVVGH 863 (1351)
Q Consensus 845 ~~~~dPya~~v~~~~~~~~ 863 (1351)
.++.||||++++++.....
T Consensus 85 ~~~~DPYa~~~~~~~~~~~ 103 (106)
T cd02855 85 PLKADPYAFYSELRPGTAS 103 (106)
T ss_pred EEeeCCCceeeEeCCCCeE
Confidence 7899999999998765433
No 94
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=98.82 E-value=1.3e-08 Score=99.62 Aligned_cols=74 Identities=28% Similarity=0.528 Sum_probs=63.6
Q ss_pred ceeEEE-----EEEEEEEeecCCCCccccceeecC-CCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeeccCCcce
Q psy9001 68 AGLLCF-----MHVVCAAGDFNNWNREEFAYKKLD-FGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWAT 141 (1351)
Q Consensus 68 ~gv~F~-----A~~V~LvGDFN~Wd~~~~~M~k~~-~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPyA~ 141 (1351)
++++|+ |++|+|+++||+|+...++|++.+ .|+|++++|+...| ..|+|++...+|....+.||||+
T Consensus 21 ~~~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~~~~G~w~~~v~~~~~~-------~~Y~~~v~~~~g~~~~~~DPYa~ 93 (106)
T cd02855 21 SGVRFAVWAPNARRVSVVGDFNGWDGRRHPMRRRGDSGVWELFIPGLGEG-------ELYKYEILGADGHLPLKADPYAF 93 (106)
T ss_pred CCEEEEEECCCCCEEEEEEECCCCCCcceecEECCCCCEEEEEECCCCCC-------CEEEEEEECCCCCEEEeeCCCce
Confidence 789999 999999999999977678999866 99999999876544 58999999755666789999999
Q ss_pred EEecCCC
Q psy9001 142 YVTEPPV 148 (1351)
Q Consensus 142 ~~~~~~~ 148 (1351)
.+...+.
T Consensus 94 ~~~~~~~ 100 (106)
T cd02855 94 YSELRPG 100 (106)
T ss_pred eeEeCCC
Confidence 9998765
No 95
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.80 E-value=1.1e-08 Score=102.80 Aligned_cols=89 Identities=17% Similarity=0.269 Sum_probs=61.9
Q ss_pred cceeecCCcEEEEeecCCccEEEEEecchhhhHHHhhccccccccccccccccCCccccCCCCCCCCCCccccccccccc
Q psy9001 698 GIHVQADNSVRCFEWAPSAQQLYLTGYNAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPASIHIPELHKLLE 777 (1351)
Q Consensus 698 G~~~~~~~~~~~~~WaP~A~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 777 (1351)
|+++++++ ++|++|||+|++|.|++|++++.
T Consensus 1 Ga~~~~~g-~~F~vwAP~A~~V~L~lf~~~~~------------------------------------------------ 31 (119)
T cd02852 1 GATIDAGG-VNFSVYSSNATAVELLLFDPGDG------------------------------------------------ 31 (119)
T ss_pred CCeEeCCC-EEEEEECCCCCEEEEEEEeCCCC------------------------------------------------
Confidence 77888765 99999999999999999643100
Q ss_pred CCCCCCcccccccc-c---cccEEeeecccccCCCCceeeecCCccccccCCCCCCeEEEEEe----cCCceeeEEE---
Q psy9001 778 RDPYLNPYQYEMKR-R---YGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQYEMKR----RYGLMVNFLE--- 846 (1351)
Q Consensus 778 ~~~~~~~~~~~m~~-~---~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~----~~~~~~~~~~--- 846 (1351)
.. ...+++|.+ + .|+| +++|++...| ..|.|+|.. ..| ...+
T Consensus 32 ~~---~~~~~~m~~~~~~~~gvW--------------~~~v~~~~~g-------~~Y~y~v~g~~~p~~g---~~~~~~~ 84 (119)
T cd02852 32 DE---PALEIELDPSVNRTGDVW--------------HVFVEGLKPG-------QLYGYRVDGPFEPEQG---HRFDPSK 84 (119)
T ss_pred CC---ceEEEeCcCcccccCCEE--------------EEEECCCCCC-------CEEEEEECCCCCCCcc---cccCCCc
Confidence 00 012356743 2 5999 8888887666 567999973 234 3334
Q ss_pred -ecCcceEEEecCCCCC
Q psy9001 847 -QLSPWATYVTEPPVVG 862 (1351)
Q Consensus 847 -~~dPya~~v~~~~~~~ 862 (1351)
.+||||++++.+...+
T Consensus 85 ~~~DPYA~a~~~~~~~~ 101 (119)
T cd02852 85 VLLDPYAKAVSGDEYFG 101 (119)
T ss_pred EEECCCcCeEcCccccC
Confidence 8999999998766433
No 96
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=98.78 E-value=5.4e-09 Score=140.58 Aligned_cols=47 Identities=26% Similarity=0.345 Sum_probs=45.5
Q ss_pred ccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccC
Q psy9001 1014 EQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASK 1060 (1351)
Q Consensus 1014 ~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~ 1060 (1351)
++||| ++||+.|||+||+.++|++||++||++||+||||+|+||++.
T Consensus 787 s~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~NH~~~ 834 (1693)
T PRK14507 787 STHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVPNHMGV 834 (1693)
T ss_pred CCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecccccCC
Confidence 57999 999999999999999999999999999999999999999995
No 97
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=98.68 E-value=1.2e-07 Score=116.11 Aligned_cols=57 Identities=28% Similarity=0.387 Sum_probs=53.1
Q ss_pred CCCCCCCC-c-ccccc-ccccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCC
Q psy9001 1005 HLLDRFGT-P-EQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN 1061 (1351)
Q Consensus 1005 ~~~~~~~s-p-~~hgY-~~Dy~~idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~ 1061 (1351)
|.||+|.+ | +.||| ++|...|||.+|+.+.|.+||.++|++||.+|+|+|+||++..
T Consensus 37 Y~SPIftA~pGStHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI~DIVPNHMav~ 96 (889)
T COG3280 37 YLSPIFTARPGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLIVDIVPNHMAVG 96 (889)
T ss_pred eccchhhcCCCCCCCccCCCccccChhhcChHHHHHHHHHHHhcCCceEEEecccchhcc
Confidence 56788877 3 78999 9999999999999999999999999999999999999999876
No 98
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.65 E-value=4.6e-08 Score=95.90 Aligned_cols=78 Identities=15% Similarity=0.121 Sum_probs=60.9
Q ss_pred cccccCceeEEE-----EEEEEEEeecCCCC-ccccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEec-------
Q psy9001 62 VDECHKAGLLCF-----MHVVCAAGDFNNWN-REEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQ------- 128 (1351)
Q Consensus 62 ~~~~~~~gv~F~-----A~~V~LvGDFN~Wd-~~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~------- 128 (1351)
+....+.|++|+ |++|+|+. |+++. ...++|++.++|+|++.|++..+| .+|+|+|+++
T Consensus 3 Ga~~~~~g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~~GvW~~~v~~~~~g-------~~Y~y~i~g~~~p~~~~ 74 (103)
T cd02856 3 GATLDGEGCNFAVHSENATRIELCL-FDEDGSETRLPLTEEYGGVWHGFLPGIKAG-------QRYGFRVHGPYDPERGL 74 (103)
T ss_pred ccEEeCCCeEEEEECCCCCEEEEEE-EeCCCCEEEEEcccccCCEEEEEECCCCCC-------CEEEEEECCccCcccCc
Confidence 334457789999 99999997 66664 456899888899999999987655 5999999872
Q ss_pred -CCceeeccCCcceEEecCC
Q psy9001 129 -HGHLLDRLSPWATYVTEPP 147 (1351)
Q Consensus 129 -~g~~~~~~DPyA~~~~~~~ 147 (1351)
.+...+++||||+.++.+.
T Consensus 75 ~~~~~~~~~DPYA~~~~~~~ 94 (103)
T cd02856 75 RFNPAKLLLDPYARALDGPL 94 (103)
T ss_pred ccCCCeEEecCCcceEcCCc
Confidence 1233679999999997654
No 99
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.53 E-value=1.4e-07 Score=94.77 Aligned_cols=75 Identities=19% Similarity=0.193 Sum_probs=59.3
Q ss_pred cCceeEEE-----EEEEEEEeecCCCCc----cccceeecC---CCeEEEEcCCCCCCCcccCcccEEEEEEEe----cC
Q psy9001 66 HKAGLLCF-----MHVVCAAGDFNNWNR----EEFAYKKLD---FGKWELVLPPNPDGSCKLTHLSQVKLVVRN----QH 129 (1351)
Q Consensus 66 ~~~gv~F~-----A~~V~LvGDFN~Wd~----~~~~M~k~~---~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~----~~ 129 (1351)
.+.|++|+ |++|+|+. |++|+. ..++|++.+ +|+|+++|++...| .+|+|+|++ .+
T Consensus 5 ~~~g~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~g-------~~Y~y~v~g~~~p~~ 76 (119)
T cd02852 5 DAGGVNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSVNRTGDVWHVFVEGLKPG-------QLYGYRVDGPFEPEQ 76 (119)
T ss_pred eCCCEEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcccccCCEEEEEECCCCCC-------CEEEEEECCCCCCCc
Confidence 45799999 99999997 888752 246887644 79999999988765 599999996 35
Q ss_pred Cceee----ccCCcceEEecCCC
Q psy9001 130 GHLLD----RLSPWATYVTEPPV 148 (1351)
Q Consensus 130 g~~~~----~~DPyA~~~~~~~~ 148 (1351)
|.+.. ++||||+++..+..
T Consensus 77 g~~~~~~~~~~DPYA~a~~~~~~ 99 (119)
T cd02852 77 GHRFDPSKVLLDPYAKAVSGDEY 99 (119)
T ss_pred ccccCCCcEEECCCcCeEcCccc
Confidence 66554 89999999976653
No 100
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=98.43 E-value=1.2e-07 Score=124.16 Aligned_cols=50 Identities=22% Similarity=0.391 Sum_probs=46.3
Q ss_pred cccccc-ccccccccCCC----CCHHHHHHHHHHHHHc-CCEEEEEeecccccCCc
Q psy9001 1013 PEQLKY-LVDECHKAGLF----GTPEQLKYLVDECHKA-GLYVLLDVVHSHASKNV 1062 (1351)
Q Consensus 1013 p~~hgY-~~Dy~~idp~y----Gt~edfK~LV~~aH~~-GI~VILDVV~NHts~~~ 1062 (1351)
++.|.| +.||+.|||.| |+.+||++||++||++ ||+||+|+|+|||+.++
T Consensus 159 ~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDvV~NHTa~ds 214 (1464)
T TIGR01531 159 GSNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDIVFNHTANNS 214 (1464)
T ss_pred CCCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEeeecccccCC
Confidence 356788 99999999999 4899999999999997 99999999999999987
No 101
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.35 E-value=7.3e-07 Score=84.37 Aligned_cols=70 Identities=17% Similarity=0.128 Sum_probs=54.8
Q ss_pred ceeEEE-----EEEEEEEeecCCCCccccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeeccCCcceE
Q psy9001 68 AGLLCF-----MHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATY 142 (1351)
Q Consensus 68 ~gv~F~-----A~~V~LvGDFN~Wd~~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPyA~~ 142 (1351)
.+++|+ |++|.|+... + ..++|.+.+.|+|+++++++ +| ..|+|+|. ++ ..+.||||++
T Consensus 8 ~~~~F~vwAP~A~~V~l~l~~--~--~~~~m~~~~~G~W~~~v~~~-~g-------~~Y~y~v~--~~--~~~~DP~a~~ 71 (85)
T cd02853 8 GGTRFRLWAPDAKRVTLRLDD--G--EEIPMQRDGDGWFEAEVPGA-AG-------TRYRYRLD--DG--TPVPDPASRF 71 (85)
T ss_pred CCEEEEEeCCCCCEEEEEecC--C--CcccCccCCCcEEEEEeCCC-CC-------CeEEEEEC--CC--cCCCCCcccc
Confidence 789999 9999999632 3 35899988899999999988 76 49999998 23 4789999999
Q ss_pred EecCCC-Cccce
Q psy9001 143 VTEPPV-VGHAY 153 (1351)
Q Consensus 143 ~~~~~~-~~~~~ 153 (1351)
+..... +|+++
T Consensus 72 ~~~~~~~~s~v~ 83 (85)
T cd02853 72 QPEGVHGPSQVV 83 (85)
T ss_pred CCCCCCCCeEee
Confidence 754443 45444
No 102
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.28 E-value=1.5e-06 Score=82.29 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.2
Q ss_pred ecCCcEEEEeecCCccEEEEEec
Q psy9001 702 QADNSVRCFEWAPSAQQLYLTGY 724 (1351)
Q Consensus 702 ~~~~~~~~~~WaP~A~~v~l~~~ 724 (1351)
.++++++|++|||.|++|.|+++
T Consensus 3 ~~~~~v~F~vwAP~A~~V~L~~~ 25 (85)
T cd02858 3 HADRTVTFRLFAPKANEVQVRGS 25 (85)
T ss_pred CCCCcEEEEEECCCCCEEEEEee
Confidence 35678999999999999999993
No 103
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.26 E-value=2.1e-06 Score=80.71 Aligned_cols=66 Identities=26% Similarity=0.399 Sum_probs=52.4
Q ss_pred eeEEE-----EEEEEEEeecCCCCccccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeeccCCcceEE
Q psy9001 69 GLLCF-----MHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATYV 143 (1351)
Q Consensus 69 gv~F~-----A~~V~LvGDFN~Wd~~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPyA~~~ 143 (1351)
.|+|+ |++|+|+|+||+|+ .++|++.++|+|+++++ +.+|. ..|||.|. |.+ .+.||.+...
T Consensus 3 ~vtf~~~ap~a~~V~v~G~fn~W~--~~~m~~~~~G~w~~~~~-l~~G~------y~Ykf~vd---g~~-~~~DP~~~~~ 69 (82)
T cd02861 3 PVVFAYRGPEADSVYLAGSFNNWN--AIPMEREGDGLWVVTVE-LRPGR------YEYKFVVD---GEW-VIVDPNAAAY 69 (82)
T ss_pred cEEEEEECCCCCEEEEEeECCCCC--cccCEECCCCcEEEEEe-CCCCc------EEEEEEEC---CEE-eeCCCCCCce
Confidence 47888 89999999999997 57999988899999997 55553 47888875 543 3689999877
Q ss_pred ecCC
Q psy9001 144 TEPP 147 (1351)
Q Consensus 144 ~~~~ 147 (1351)
..++
T Consensus 70 ~~~~ 73 (82)
T cd02861 70 VDDG 73 (82)
T ss_pred ecCC
Confidence 5554
No 104
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=98.24 E-value=1e-05 Score=94.64 Aligned_cols=138 Identities=19% Similarity=0.264 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCC-----CCCccCCCCCHHHHHHHHH
Q psy9001 319 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPL-----WDSRLFNYSEIEVLRFLLS 393 (1351)
Q Consensus 319 ~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~-----w~~~~ln~~~p~v~~~l~~ 393 (1351)
-+-|+.||++||++||+|.-=+.++...... ......++.++.....+.... -+..-||-++|+||+||++
T Consensus 69 ~DpL~~~I~eaHkrGlevHAW~~~~~~~~~~----~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~ 144 (311)
T PF02638_consen 69 FDPLEFMIEEAHKRGLEVHAWFRVGFNAPDV----SHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIID 144 (311)
T ss_pred ccHHHHHHHHHHHcCCEEEEEEEeecCCCch----hhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHH
Confidence 3679999999999999998766444332210 001111122221111111000 1123589999999999999
Q ss_pred HHHHHHHHcCCCccccccccccccccCCCCCCCCC--CccccCC-----CccC-------ch-HHHHHHHHHHHHHhhCC
Q psy9001 394 NLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSG--HYDEYFG-----LNVD-------TD-ALIYLMVANKFLHDKYP 458 (1351)
Q Consensus 394 ~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~--~~~~~~~-----~~~~-------~~-~~~f~~~~~~~v~~~~P 458 (1351)
.++--++.|.|||..||-. .|.....+..+.. .+..+.+ ...+ .+ --.|.+.+.++|++++|
T Consensus 145 ~v~Eiv~~YdvDGIhlDdy---~yp~~~~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~~ik~~kP 221 (311)
T PF02638_consen 145 IVKEIVKNYDVDGIHLDDY---FYPPPSFGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYDAIKAIKP 221 (311)
T ss_pred HHHHHHhcCCCCeEEeccc---ccccccCCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999932 1211111111100 0111111 0111 11 12588889999999999
Q ss_pred CeEEE
Q psy9001 459 EIITI 463 (1351)
Q Consensus 459 ~~~~i 463 (1351)
++.+=
T Consensus 222 ~v~~s 226 (311)
T PF02638_consen 222 WVKFS 226 (311)
T ss_pred CCeEE
Confidence 97663
No 105
>PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria. It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A ....
Probab=98.17 E-value=5.6e-06 Score=78.70 Aligned_cols=82 Identities=23% Similarity=0.274 Sum_probs=57.6
Q ss_pred HHHHHHHhhhcccccccCCcceEee---cCCCcEEEEEeC----ceEEEEeCCCCCcccccccccccCcccccccccccc
Q psy9001 502 FDAAMNTTEERFKWLSADPGYVSTK---HEGDKVIIFERA----GLLFAFNFNGTQSFTDYRYCSTQSYSTHNTWTWRGS 574 (1351)
Q Consensus 502 f~k~L~~Lr~~~~~L~~g~~~~~~~---~~~~~Vlaf~R~----~ll~v~Nf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (1351)
|||+||+||+++|+|+.+.. ..+. ...+.++++.|. .++|++||++. .
T Consensus 1 ~yr~Li~LRr~~PaL~~~~~-~~~~~~~~~~~~l~~~~r~~~~~~l~v~~Nls~~------~------------------ 55 (89)
T PF11941_consen 1 FYRRLIALRRQHPALRDGDF-RFLEVERDAPDALLAFRRTGGGERLLVAFNLSDE------P------------------ 55 (89)
T ss_dssp HHHHHHHHHHHHTHHCCSEE-EEEEEEEEEETTEEEEEEEETTEEEEEEEE-SSS-------------------------
T ss_pred CHHHHHHHHhhCccccCCCc-ccEEEEecCCCEEEEEEEEcCCceEEEEEecCCC------c------------------
Confidence 79999999999999998832 2222 445678888884 79999999987 2
Q ss_pred cccceEeeeccCCceEEEccCCCCccCcccccCCCCceeeeecccCCcccEEEEEeCCcEEEEE
Q psy9001 575 ISKLHRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGLIL 638 (1351)
Q Consensus 575 ~~~~~~v~v~~~g~~~~vlnsD~~~ygG~~~~~~~~~~~~~~~~~~g~~~si~l~LPpls~~vl 638 (1351)
+.++.....+.++.|+...++| .++|||.+++|+
T Consensus 56 ------~~~~~~~~~~~l~~s~~~~~~~------------------------~~~L~p~~~~v~ 89 (89)
T PF11941_consen 56 ------VTVPEGPWGEVLFSSEPARAGG------------------------AGTLPPWSVVVL 89 (89)
T ss_dssp ------EEEETSCCEEEEEECSCSSE--------------------------EEEE-TTEEEEE
T ss_pred ------EEccCCCCCeEEEcCCCccccc------------------------CceECCCEEEEC
Confidence 4444445667777775544333 489999999886
No 106
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.10 E-value=8.8e-06 Score=77.13 Aligned_cols=66 Identities=14% Similarity=0.182 Sum_probs=51.4
Q ss_pred CceeEEE-----EEEEEEEeecCCCCccccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeeccCCcce
Q psy9001 67 KAGLLCF-----MHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWAT 141 (1351)
Q Consensus 67 ~~gv~F~-----A~~V~LvGDFN~Wd~~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPyA~ 141 (1351)
...|+|+ |++|+|+|+||+|. .++|++.++|+|+++++....| .|.|++. .+| ....||+++
T Consensus 5 ~~~v~F~vwAP~A~~V~L~~~~~~~~--~~~m~~~~~G~W~~~v~~l~~g--------~Y~Y~~~-vdg--~~~~DP~s~ 71 (85)
T cd02858 5 DRTVTFRLFAPKANEVQVRGSWGGAG--SHPMTKDEAGVWSVTTGPLAPG--------IYTYSFL-VDG--VRVIDPSNP 71 (85)
T ss_pred CCcEEEEEECCCCCEEEEEeecCCCc--cEeCeECCCeEEEEEECCCCCc--------EEEEEEE-ECC--eEecCCCCC
Confidence 3579999 99999999999654 5899998899999999766554 5566665 245 467999998
Q ss_pred EEec
Q psy9001 142 YVTE 145 (1351)
Q Consensus 142 ~~~~ 145 (1351)
....
T Consensus 72 ~~~~ 75 (85)
T cd02858 72 TTKP 75 (85)
T ss_pred ceee
Confidence 7653
No 107
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=97.90 E-value=2.8e-05 Score=93.02 Aligned_cols=90 Identities=24% Similarity=0.296 Sum_probs=66.5
Q ss_pred CCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccCCCCccccCcccccccccch
Q psy9001 195 CASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDK 274 (1351)
Q Consensus 195 ~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~s~~~~~wGY~~~~y~~~~~ 274 (1351)
.|.|.+..+. |+.++++|+|. |+++| +++. ...+| -|...|..
T Consensus 18 ~G~~~~W~~~-l~~~~~~GYNm----IHftP--------------------lq~~--G~S~S------~YSI~Dql---- 60 (423)
T PF14701_consen 18 MGPFSDWEKH-LKVISEKGYNM----IHFTP--------------------LQER--GESNS------PYSIYDQL---- 60 (423)
T ss_pred cCCHhHHHHH-HHHHHHcCCcE----EEecc--------------------cccC--CCCCC------Cccccchh----
Confidence 5889988877 99999999999 99999 5555 22233 57777766
Q ss_pred hhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHH-HcCCEEEEEeeccccccCCcC
Q psy9001 275 EMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH-KAGLYVLLDVVHSHASKNVLD 351 (1351)
Q Consensus 275 e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H-~~GI~VILDvV~NH~~~~~~~ 351 (1351)
..++.+-.+ ..-.+.+++++||++++ +.||.+|.|||+|||+.++.|
T Consensus 61 -----------------~~~~~~~~~-------------~~~~~~~~v~~~v~~~~~~~~ll~~~DvV~NHtA~nS~W 108 (423)
T PF14701_consen 61 -----------------KFDPDFFPP-------------GKESTFEDVKEFVKEAEKKYGLLSMTDVVLNHTANNSPW 108 (423)
T ss_pred -----------------hcChhhcCC-------------CccccHHHHHHHHHHHHHHcCceEEEEEeeccCcCCChH
Confidence 222222111 11135689999999996 699999999999999998644
No 108
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=97.80 E-value=3.4e-05 Score=72.15 Aligned_cols=60 Identities=28% Similarity=0.410 Sum_probs=46.6
Q ss_pred eeEEE----EEEEEEEeecCCCCccccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceeeccCCcceE
Q psy9001 69 GLLCF----MHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATY 142 (1351)
Q Consensus 69 gv~F~----A~~V~LvGDFN~Wd~~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~~~DPyA~~ 142 (1351)
.|+|+ |++|+|+|+||+|+. .+||++.++| |++.++ +++|. ..|||.|. |+ ++.||-...
T Consensus 3 ~v~f~~~~~a~~V~v~G~F~~W~~-~~pm~~~~~~-~~~~~~-L~~g~------y~YkF~Vd---g~--w~~d~~~~~ 66 (79)
T cd02859 3 PTTFVWPGGGKEVYVTGSFDNWKK-KIPLEKSGKG-FSATLR-LPPGK------YQYKFIVD---GE--WRHSPDLPT 66 (79)
T ss_pred EEEEEEcCCCcEEEEEEEcCCCCc-cccceECCCC-cEEEEE-cCCCC------EEEEEEEC---CE--EEeCCCCCc
Confidence 47888 999999999999987 6899998777 999985 55563 57788774 54 577885443
No 109
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=97.54 E-value=0.0004 Score=71.36 Aligned_cols=86 Identities=27% Similarity=0.371 Sum_probs=56.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCC--------CCCCCCccCCCCCH
Q psy9001 314 GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGT--------HPLWDSRLFNYSEI 385 (1351)
Q Consensus 314 ~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~--------~~~w~~~~ln~~~p 385 (1351)
|.++ .+-|+++|++||++||+|+.=+-++ .-.. .-..++.|+..+++|. .+.|...++| .
T Consensus 39 p~L~-~Dllge~v~a~h~~Girv~ay~~~~-~d~~-------~~~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~n---s 106 (132)
T PF14871_consen 39 PGLK-RDLLGEQVEACHERGIRVPAYFDFS-WDED-------AAERHPEWFVRDADGRPMRGERFGYPGWYTCCLN---S 106 (132)
T ss_pred CCCC-cCHHHHHHHHHHHCCCEEEEEEeee-cChH-------HHHhCCceeeECCCCCCcCCCCcCCCCceecCCC---c
Confidence 5565 5789999999999999998655554 2111 0012244554444433 1234444554 3
Q ss_pred HHHHHHHHHHHHHHHHcCCCcccccc
Q psy9001 386 EVLRFLLSNLRWYLDEYQFDGFRFDG 411 (1351)
Q Consensus 386 ~v~~~l~~~l~~W~~e~~vDGfR~D~ 411 (1351)
..+++++..++--++.|.+||+=||.
T Consensus 107 ~Y~e~~~~~i~Ei~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 107 PYREFLLEQIREILDRYDVDGIFFDI 132 (132)
T ss_pred cHHHHHHHHHHHHHHcCCCCEEEecC
Confidence 45689999999999999999998873
No 110
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=97.49 E-value=0.0002 Score=87.94 Aligned_cols=107 Identities=15% Similarity=0.191 Sum_probs=60.2
Q ss_pred CceEEEEecC--CccCCCCCCCHHHHHHhhhHHHHHcCCCcCceeEEEeecccccccCccceEEEccccccccccccccC
Q psy9001 178 NLKIYESHVG--ICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAE 255 (1351)
Q Consensus 178 ~~vIYE~hvr--~ft~~~~~G~~~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~~~~~~~~~ii~~~~~~~~~e~~~~~~~ 255 (1351)
.-+|||-+-- .|-....--+..-|++. .+-+|++|||. .||-|-+- + ..++
T Consensus 564 SqvIYEgFSNFQ~~~t~~~eytN~~IA~N-a~lFk~wGITs----FemAPQY~--------------------S--s~D~ 616 (809)
T PF02324_consen 564 SQVIYEGFSNFQDFPTTPSEYTNVVIAKN-ADLFKSWGITS----FEMAPQYR--------------------S--STDG 616 (809)
T ss_dssp T-EEEE---TTB---SSGGGSHHHHHHHT-HHHHHHTTEEE----EE----S---------------------B----SS
T ss_pred cchhhccccccccCCCChHHHHHHHHHHh-HHHHHhcCcce----eeeCccee--------------------c--CCCC
Confidence 5599996542 12112223456667776 99999999999 99999221 0 1111
Q ss_pred CC--CccccCcccccccccchhhhcccccCCCCchhcccccccCCCCccccccccccccCCCCCCHHHHHHHHHHHHHcC
Q psy9001 256 SH--DQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 333 (1351)
Q Consensus 256 s~--~~~~wGY~~~~y~~~~~e~~~~~s~~~dp~~~~~a~~~~y~~~~~~~y~~d~~~id~~~G~~~efk~LV~~~H~~G 333 (1351)
+- ....-||.-+|=|.++ + ..| ..||+.+||+..|+++|+.|
T Consensus 617 tFLDSiiqNGYAFtDRYDLg------~----------s~p--------------------tKYGs~~dL~~AikALH~~G 660 (809)
T PF02324_consen 617 TFLDSIIQNGYAFTDRYDLG------M----------SKP--------------------TKYGSVEDLRNAIKALHAAG 660 (809)
T ss_dssp SSHHHHTT-SSSBS-TT-SS------S----------SS---------------------BTTB-HHHHHHHHHHHHHTT
T ss_pred cchhhHhhcCccccchhhhc------C----------CCC--------------------CCCCCHHHHHHHHHHHHHcC
Confidence 10 0123588888877331 1 022 57999999999999999999
Q ss_pred CEEEEEeecccccc
Q psy9001 334 LYVLLDVVHSHASK 347 (1351)
Q Consensus 334 I~VILDvV~NH~~~ 347 (1351)
|+||-|||++....
T Consensus 661 iqviaDwVpdQiYn 674 (809)
T PF02324_consen 661 IQVIADWVPDQIYN 674 (809)
T ss_dssp -EEEEEE-TSEE--
T ss_pred cchhhhhchHhhhC
Confidence 99999999997654
No 111
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=97.43 E-value=0.00071 Score=79.38 Aligned_cols=139 Identities=17% Similarity=0.193 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCC-----CCCCCCCCCCHHHHHHHHH
Q psy9001 1032 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPL-----WDSRLFNYSEIEVLRFLLS 1106 (1351)
Q Consensus 1032 ~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~-----w~~~dlN~~np~Vr~~lid 1106 (1351)
-+=|+.||++||++||+|.-=+.++...... ......++.++.....+.... .+..-||-.+|+||++|++
T Consensus 69 ~DpL~~~I~eaHkrGlevHAW~~~~~~~~~~----~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~ 144 (311)
T PF02638_consen 69 FDPLEFMIEEAHKRGLEVHAWFRVGFNAPDV----SHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIID 144 (311)
T ss_pred ccHHHHHHHHHHHcCCEEEEEEEeecCCCch----hhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHH
Confidence 4569999999999999999877554433221 011111222222111111000 1112489999999999999
Q ss_pred HHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccC-----CcCC-------hh-HHHHHHHHHHHHHhhCCCe
Q psy9001 1107 NLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG-----LNVD-------TD-ALIYLMVANKFLHDKYPEI 1173 (1351)
Q Consensus 1107 ~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g-----~~~d-------~~-~~~fl~~~~~~l~~~~Pd~ 1173 (1351)
.++--++.|.|||..||-.-... ...|-...-...|..+.| ...| .+ -..|++.+.+.|++++|++
T Consensus 145 ~v~Eiv~~YdvDGIhlDdy~yp~-~~~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~~ik~~kP~v 223 (311)
T PF02638_consen 145 IVKEIVKNYDVDGIHLDDYFYPP-PSFGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYDAIKAIKPWV 223 (311)
T ss_pred HHHHHHhcCCCCeEEeccccccc-ccCCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999433211 111110000001222222 0112 11 2346788889999999996
Q ss_pred EE
Q psy9001 1174 IT 1175 (1351)
Q Consensus 1174 il 1175 (1351)
.+
T Consensus 224 ~~ 225 (311)
T PF02638_consen 224 KF 225 (311)
T ss_pred eE
Confidence 65
No 112
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.29 E-value=0.00085 Score=63.12 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=18.9
Q ss_pred CcEEEEeecCCccEEEEEec-ch
Q psy9001 705 NSVRCFEWAPSAQQLYLTGY-NA 726 (1351)
Q Consensus 705 ~~~~~~~WaP~A~~v~l~~~-~~ 726 (1351)
..++|++|||.|++|+|+|. |+
T Consensus 2 ~~vtf~~~ap~a~~V~v~G~fn~ 24 (82)
T cd02861 2 VPVVFAYRGPEADSVYLAGSFNN 24 (82)
T ss_pred ccEEEEEECCCCCEEEEEeECCC
Confidence 35899999999999999993 44
No 113
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.15 E-value=0.0044 Score=74.43 Aligned_cols=132 Identities=15% Similarity=0.171 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHcCCEEEEEeeccccccCCcCCc-cc----CCC-CCCcCcccCCCCCCCCC-CCccCCCCCHHHHHHHH
Q psy9001 320 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL-NE----FDG-TQACFFHDGPRGTHPLW-DSRLFNYSEIEVLRFLL 392 (1351)
Q Consensus 320 ~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~-~~----f~g-~~~~yy~~~~~~~~~~w-~~~~ln~~~p~v~~~l~ 392 (1351)
+-|..+|++||++||+|+-=+-+--++....... .. -.+ ....|+.. ..| ...-||-.+|+||+||.
T Consensus 115 DpLa~~I~~AHkr~l~v~aWf~~~~~a~~~s~~~~~~p~~~~~~~~~~~~~~~------~~~~~~~~ldPg~Pevq~~i~ 188 (418)
T COG1649 115 DPLAFVIAEAHKRGLEVHAWFNPYRMAPPTSPLTKRHPHWLTTKRPGWVYVRH------QGWGKRVWLDPGIPEVQDFIT 188 (418)
T ss_pred ChHHHHHHHHHhcCCeeeechhhcccCCCCChhHhhCCCCcccCCCCeEEEec------CCceeeeEeCCCChHHHHHHH
Confidence 6689999999999999985444433332210000 00 000 00112211 112 22348999999999999
Q ss_pred HHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccc--cCCC----ccCch---------HHHHHHHHHHHHHhhC
Q psy9001 393 SNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDE--YFGL----NVDTD---------ALIYLMVANKFLHDKY 457 (1351)
Q Consensus 393 ~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~--~~~~----~~~~~---------~~~f~~~~~~~v~~~~ 457 (1351)
+.+.--+..|.|||.-||---... .+. ++...... .++. ..+.+ ...|++.++..|++.+
T Consensus 189 ~lv~evV~~YdvDGIQfDd~fy~~-~~~----gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VKavK 263 (418)
T COG1649 189 SLVVEVVRNYDVDGIQFDDYFYYP-IPF----GYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTVKAVK 263 (418)
T ss_pred HHHHHHHhCCCCCceecceeeccc-Ccc----ccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHhhC
Confidence 999999999999999999533210 111 11000000 0000 01111 2358889999999999
Q ss_pred CCeEE
Q psy9001 458 PEIIT 462 (1351)
Q Consensus 458 P~~~~ 462 (1351)
|++++
T Consensus 264 p~v~~ 268 (418)
T COG1649 264 PNVKF 268 (418)
T ss_pred CCeEE
Confidence 99876
No 114
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.95 E-value=0.002 Score=59.44 Aligned_cols=55 Identities=27% Similarity=0.351 Sum_probs=44.7
Q ss_pred ceeEEE-----EEEEEEEeecCCCCccccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecC
Q psy9001 68 AGLLCF-----MHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQH 129 (1351)
Q Consensus 68 ~gv~F~-----A~~V~LvGDFN~Wd~~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~ 129 (1351)
.+++|+ |++|.|+++|++| ...++|.+...|+|++.|+.... .+..|+|++.+..
T Consensus 4 ~~v~f~v~ap~a~~v~l~~~~~~~-~~~~~~~~~~~g~w~~~v~~~~~------~~~~Y~~~v~~~~ 63 (83)
T cd02688 4 KGVTFTVRGPKAQRVSLAGSFNGD-TQLIPMTKVEDGYWEVELPLPSP------GKYQYKYVLDGGK 63 (83)
T ss_pred ccEEEEEECCCCCEEEEEEEECCC-CCcccCEECCCceEEEEEcCCCC------CCeEEEEEEeCCC
Confidence 578999 7899999999885 34689999888999999987651 2469999998543
No 115
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=96.52 E-value=0.0077 Score=62.02 Aligned_cols=88 Identities=25% Similarity=0.354 Sum_probs=57.7
Q ss_pred ccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCC--------CCCCCCCCCCC
Q psy9001 1025 KAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTH--------PLWDSRLFNYS 1096 (1351)
Q Consensus 1025 idp~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~--------~~w~~~dlN~~ 1096 (1351)
.+|.++ .+=|+++|++||++||+|+.=+-++ .++. .-..++.|+..+++|.. +.|-...+|
T Consensus 37 ~hp~L~-~Dllge~v~a~h~~Girv~ay~~~~--~d~~------~~~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~n-- 105 (132)
T PF14871_consen 37 RHPGLK-RDLLGEQVEACHERGIRVPAYFDFS--WDED------AAERHPEWFVRDADGRPMRGERFGYPGWYTCCLN-- 105 (132)
T ss_pred CCCCCC-cCHHHHHHHHHHHCCCEEEEEEeee--cChH------HHHhCCceeeECCCCCCcCCCCcCCCCceecCCC--
Confidence 355666 6778999999999999999765544 1111 00133455554444431 112222344
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCeEEEcC
Q psy9001 1097 EIEVLRFLLSNLRWYLEEYQFDGFRFDG 1124 (1351)
Q Consensus 1097 np~Vr~~lid~l~yWl~eygVDGFRfD~ 1124 (1351)
. ..+++++..++--++.|.+|||=||.
T Consensus 106 s-~Y~e~~~~~i~Ei~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 106 S-PYREFLLEQIREILDRYDVDGIFFDI 132 (132)
T ss_pred c-cHHHHHHHHHHHHHHcCCCCEEEecC
Confidence 3 45689999999999999999998884
No 116
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=96.52 E-value=0.004 Score=74.07 Aligned_cols=93 Identities=23% Similarity=0.359 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHcCCEEEEEeecccccCC-cccc--CcCC-CCCCCccccCCCCCCC----CCCC--CCCCCCCCHHHHHH
Q psy9001 1034 QLKYLVDECHKAGLYVLLDVVHSHASKN-VLDG--LNEF-DGTQACFFHDGPRGTH----PLWD--SRLFNYSEIEVLRF 1103 (1351)
Q Consensus 1034 dfK~LV~~aH~~GI~VILDVV~NHts~~-~~~~--l~~~-dg~~~~yf~~~~~g~~----~~w~--~~dlN~~np~Vr~~ 1103 (1351)
+.++||+++|++|++|++=|.+ +...+ +... ...+ .+....||..+..|.. ..|- +.-+|+.||++|+.
T Consensus 86 dp~~mi~~Lh~~G~kv~l~v~P-~i~~~~~~~~~~~~~~~~~~~~g~~vk~~~G~~~~~~~~W~g~~~~~Dftnp~a~~W 164 (340)
T cd06597 86 NPKGMIDELHEQGVKVLLWQIP-IIKLRPHPHGQADNDEDYAVAQNYLVQRGVGKPYRIPGQWFPDSLMLDFTNPEAAQW 164 (340)
T ss_pred CHHHHHHHHHHCCCEEEEEecC-ccccccccccccchhHHHHHHCCEEEEcCCCCccccccccCCCceeecCCCHHHHHH
Confidence 5789999999999999985443 22211 0000 0000 1122234544433321 2352 34699999999999
Q ss_pred HHHHHHHHHHHhCCCeEEEcCccc
Q psy9001 1104 LLSNLRWYLEEYQFDGFRFDGVTS 1127 (1351)
Q Consensus 1104 lid~l~yWl~eygVDGFRfD~a~~ 1127 (1351)
..+.++.+++++|||||-+|+...
T Consensus 165 w~~~~~~~~~~~Gidg~w~D~~E~ 188 (340)
T cd06597 165 WMEKRRYLVDELGIDGFKTDGGEH 188 (340)
T ss_pred HHHHHHHHHHhcCCcEEEecCCCc
Confidence 999999999999999999998764
No 117
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=96.38 E-value=0.019 Score=69.46 Aligned_cols=126 Identities=17% Similarity=0.161 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHH
Q psy9001 1033 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW-DSRLFNYSEIEVLRFLLSNLRWY 1111 (1351)
Q Consensus 1033 edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w-~~~dlN~~np~Vr~~lid~l~yW 1111 (1351)
+-|+.|++.+|++||+.=|=+-+--++.+.. .-..++.|....+......+ ....||+++|+|+++|.+.+.-.
T Consensus 104 ~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~~S~-----l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~l 178 (394)
T PF02065_consen 104 NGLKPLADYIHSLGMKFGLWFEPEMVSPDSD-----LYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRL 178 (394)
T ss_dssp THHHHHHHHHHHTT-EEEEEEETTEEESSSC-----HCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHCCCeEEEEeccccccchhH-----HHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHH
Confidence 4599999999999999999886665555431 11123344433222111111 11249999999999999999999
Q ss_pred HHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEE
Q psy9001 1112 LEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIIT 1175 (1351)
Q Consensus 1112 l~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~il 1175 (1351)
++++|||.|.+|....+... ...... .....-..-+-++.+.|++.+|++++
T Consensus 179 l~~~gidYiK~D~n~~~~~~-------~~~~~~-----~~~~~~~~~~y~l~~~L~~~~P~v~i 230 (394)
T PF02065_consen 179 LREWGIDYIKWDFNRDITEA-------GSPSLP-----EGYHRYVLGLYRLLDRLRARFPDVLI 230 (394)
T ss_dssp HHHTT-SEEEEE-TS-TTS--------SSTTS------GHHHHHHHHHHHHHHHHHHHTTTSEE
T ss_pred HHhcCCCEEEeccccCCCCC-------CCCCch-----HHHHHHHHHHHHHHHHHHHhCCCcEE
Confidence 99999999999998766211 000000 00011122234678889999999877
No 118
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=96.37 E-value=0.017 Score=68.84 Aligned_cols=94 Identities=23% Similarity=0.376 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHcCCEEEEEeeccccccC-CcCCc--ccC-CCCCCcCcccCCCCCC----CCCC--CccCCCCCHHHHHH
Q psy9001 321 QLKYLVDECHKAGLYVLLDVVHSHASKN-VLDGL--NEF-DGTQACFFHDGPRGTH----PLWD--SRLFNYSEIEVLRF 390 (1351)
Q Consensus 321 efk~LV~~~H~~GI~VILDvV~NH~~~~-~~~~~--~~f-~g~~~~yy~~~~~~~~----~~w~--~~~ln~~~p~v~~~ 390 (1351)
+.++||+++|++|++|+|=+.+ +...+ ...+. ..+ .+....||..+..+.. ..|. +.-+|+.||+++++
T Consensus 86 dp~~mi~~Lh~~G~kv~l~v~P-~i~~~~~~~~~~~~~~~~~~~~g~~vk~~~G~~~~~~~~W~g~~~~~Dftnp~a~~W 164 (340)
T cd06597 86 NPKGMIDELHEQGVKVLLWQIP-IIKLRPHPHGQADNDEDYAVAQNYLVQRGVGKPYRIPGQWFPDSLMLDFTNPEAAQW 164 (340)
T ss_pred CHHHHHHHHHHCCCEEEEEecC-ccccccccccccchhHHHHHHCCEEEEcCCCCccccccccCCCceeecCCCHHHHHH
Confidence 5789999999999999985544 22211 00000 001 1222334544433321 2343 35699999999999
Q ss_pred HHHHHHHHHHHcCCCcccccccccc
Q psy9001 391 LLSNLRWYLDEYQFDGFRFDGVTSM 415 (1351)
Q Consensus 391 l~~~l~~W~~e~~vDGfR~D~a~~~ 415 (1351)
..+.++.+++++|||||.+|+....
T Consensus 165 w~~~~~~~~~~~Gidg~w~D~~E~~ 189 (340)
T cd06597 165 WMEKRRYLVDELGIDGFKTDGGEHV 189 (340)
T ss_pred HHHHHHHHHHhcCCcEEEecCCCcc
Confidence 9999999998899999999977643
No 119
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=96.27 E-value=0.022 Score=66.87 Aligned_cols=131 Identities=14% Similarity=0.194 Sum_probs=77.9
Q ss_pred HHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCC---CCCC--CCCCCCCCHHHHHHHHHHHH
Q psy9001 1035 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTH---PLWD--SRLFNYSEIEVLRFLLSNLR 1109 (1351)
Q Consensus 1035 fK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~---~~w~--~~dlN~~np~Vr~~lid~l~ 1109 (1351)
.++||+++|++|++|++-+.+ +.+.++. .+. .+....||.....+.. ..|. ..-+|+.||++|+++.+.++
T Consensus 68 ~~~~i~~l~~~G~~~~~~~~P-~i~~~~~-~~~--e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~ 143 (308)
T cd06593 68 PEGMLSRLKEKGFKVCLWINP-YIAQKSP-LFK--EAAEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLK 143 (308)
T ss_pred HHHHHHHHHHCCCeEEEEecC-CCCCCch-hHH--HHHHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHH
Confidence 689999999999999999865 5554431 010 1111233433222221 1232 34689999999999999999
Q ss_pred HHHHHhCCCeEEEcCcccccccCCCCCCCCC-CCcccccCCcCChhHHHHHHHHHHHHHhhCCC--eEEEEc
Q psy9001 1110 WYLEEYQFDGFRFDGVTSMLYHNHGCGEGFS-GHYDEYFGLNVDTDALIYLMVANKFLHDKYPE--IITIAE 1178 (1351)
Q Consensus 1110 yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~-~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd--~ilIaE 1178 (1351)
.+++ +|||||-+|....+..+..- ..+.. .... +.-++.+.+.+.+.+++..++ .+++.-
T Consensus 144 ~~~~-~Gid~~~~D~~e~~p~~~~~-~~g~~~~~~h-------n~y~~~~~~~~~~~~~~~~~~~r~~~~~R 206 (308)
T cd06593 144 PLLD-MGVDCFKTDFGERIPTDVVY-YDGSDGEKMH-------NYYALLYNKAVYEATKEVKGEGEAVVWAR 206 (308)
T ss_pred HHHH-hCCcEEecCCCCCCCccccc-cCCCCcceee-------eHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Confidence 8887 69999999988755322100 00000 0011 222455556666667776665 555554
No 120
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.12 E-value=0.013 Score=54.06 Aligned_cols=20 Identities=30% Similarity=0.366 Sum_probs=18.0
Q ss_pred CcEEEEeecCCccEEEEEec
Q psy9001 705 NSVRCFEWAPSAQQLYLTGY 724 (1351)
Q Consensus 705 ~~~~~~~WaP~A~~v~l~~~ 724 (1351)
++++|++|||.|++|.|.++
T Consensus 4 ~~v~f~v~ap~a~~v~l~~~ 23 (83)
T cd02688 4 KGVTFTVRGPKAQRVSLAGS 23 (83)
T ss_pred ccEEEEEECCCCCEEEEEEE
Confidence 35999999999999999994
No 121
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=96.08 E-value=0.029 Score=65.89 Aligned_cols=131 Identities=15% Similarity=0.212 Sum_probs=77.8
Q ss_pred HHHHHHHHHHcCCEEEEEeeccccccCCcCCcccC-CCCCCcCcccCCCCCC---CCCC--CccCCCCCHHHHHHHHHHH
Q psy9001 322 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-DGTQACFFHDGPRGTH---PLWD--SRLFNYSEIEVLRFLLSNL 395 (1351)
Q Consensus 322 fk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f-~g~~~~yy~~~~~~~~---~~w~--~~~ln~~~p~v~~~l~~~l 395 (1351)
.++||+++|++|++|++-+.+ +.+.++. .| .+....|+.....+.. ..|. ..-+|+.||++++++.+.+
T Consensus 68 ~~~~i~~l~~~G~~~~~~~~P-~i~~~~~----~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~ 142 (308)
T cd06593 68 PEGMLSRLKEKGFKVCLWINP-YIAQKSP----LFKEAAEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKL 142 (308)
T ss_pred HHHHHHHHHHCCCeEEEEecC-CCCCCch----hHHHHHHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHH
Confidence 689999999999999998875 4544321 11 1111233333222221 2233 3568999999999999999
Q ss_pred HHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCC--eEEEEE
Q psy9001 396 RWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPE--IITIAE 465 (1351)
Q Consensus 396 ~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~--~~~iaE 465 (1351)
+.+++ +|||||-+|....+..+.. ...+.. ..+ --|.-+..+-+.+.+.+++..++ .+++.-
T Consensus 143 ~~~~~-~Gid~~~~D~~e~~p~~~~-~~~g~~--~~~----~hn~y~~~~~~~~~~~~~~~~~~~r~~~~~R 206 (308)
T cd06593 143 KPLLD-MGVDCFKTDFGERIPTDVV-YYDGSD--GEK----MHNYYALLYNKAVYEATKEVKGEGEAVVWAR 206 (308)
T ss_pred HHHHH-hCCcEEecCCCCCCCcccc-ccCCCC--cce----eeeHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Confidence 98887 8999999998765422100 000000 000 01333455666666777777665 444443
No 122
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=95.96 E-value=0.014 Score=68.44 Aligned_cols=90 Identities=22% Similarity=0.465 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCC----CCCCCC--CCCCCCCCHHHHHHHHHH
Q psy9001 1034 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRG----THPLWD--SRLFNYSEIEVLRFLLSN 1107 (1351)
Q Consensus 1034 dfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g----~~~~w~--~~dlN~~np~Vr~~lid~ 1107 (1351)
+.++||+++|++|++|++=+-+ +.+.+.. .+. .+....||...+.| ....|. +.-+|+.||++|+.+.+.
T Consensus 71 dp~~mi~~l~~~G~k~~l~i~P-~i~~~s~-~~~--e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~ 146 (303)
T cd06592 71 DPKGMIDQLHDLGFRVTLWVHP-FINTDSE-NFR--EAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSR 146 (303)
T ss_pred CHHHHHHHHHHCCCeEEEEECC-eeCCCCH-HHH--hhhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHH
Confidence 3789999999999999998776 3443321 011 12223344433333 112343 235899999999999999
Q ss_pred HHHHHHHhCCCeEEEcCccc
Q psy9001 1108 LRWYLEEYQFDGFRFDGVTS 1127 (1351)
Q Consensus 1108 l~yWl~eygVDGFRfD~a~~ 1127 (1351)
++..+.++|||||-+|....
T Consensus 147 ~~~~~~~~Gvdg~w~D~~E~ 166 (303)
T cd06592 147 LKSLQEKYGIDSFKFDAGEA 166 (303)
T ss_pred HHHHHHHhCCcEEEeCCCCc
Confidence 99999889999999998763
No 123
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=95.79 E-value=0.012 Score=69.31 Aligned_cols=92 Identities=12% Similarity=0.150 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCC---CCCCC--CCCCCCCCHHHHHHHHHHH
Q psy9001 1034 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGT---HPLWD--SRLFNYSEIEVLRFLLSNL 1108 (1351)
Q Consensus 1034 dfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~---~~~w~--~~dlN~~np~Vr~~lid~l 1108 (1351)
+.++||+++|++|++|++-+ ..+...+..... -++....||...+.|. ...|. +.-+|+.||++|+...+-+
T Consensus 72 dp~~mi~~Lh~~G~~~~~~i-~P~v~~~~~~~y--~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~ 148 (317)
T cd06594 72 GLDELIEELKARGIRVLTYI-NPYLADDGPLYY--EEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVI 148 (317)
T ss_pred CHHHHHHHHHHCCCEEEEEe-cCceecCCchhH--HHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHH
Confidence 46899999999999999954 455544321100 0122233444433332 22332 3469999999999999999
Q ss_pred HHHHHHhCCCeEEEcCcccc
Q psy9001 1109 RWYLEEYQFDGFRFDGVTSM 1128 (1351)
Q Consensus 1109 ~yWl~eygVDGFRfD~a~~m 1128 (1351)
+..+.++|||||=+|+-..+
T Consensus 149 ~~~~~~~Gvdg~w~D~~E~~ 168 (317)
T cd06594 149 KEMLLDLGLSGWMADFGEYL 168 (317)
T ss_pred HHHhhhcCCcEEEecCCCCC
Confidence 98877789999999977644
No 124
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=95.68 E-value=0.017 Score=67.76 Aligned_cols=89 Identities=22% Similarity=0.478 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCC-CCCCcCcccCCCCC----CCCCCC--ccCCCCCHHHHHHHHH
Q psy9001 321 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFD-GTQACFFHDGPRGT----HPLWDS--RLFNYSEIEVLRFLLS 393 (1351)
Q Consensus 321 efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~-g~~~~yy~~~~~~~----~~~w~~--~~ln~~~p~v~~~l~~ 393 (1351)
+.++||+++|++|+++++=+-+ +.+.++. .|. +....|+..++.+. ...|.+ ..+|+.||++++++.+
T Consensus 71 dp~~mi~~l~~~G~k~~l~i~P-~i~~~s~----~~~e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~ 145 (303)
T cd06592 71 DPKGMIDQLHDLGFRVTLWVHP-FINTDSE----NFREAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLS 145 (303)
T ss_pred CHHHHHHHHHHCCCeEEEEECC-eeCCCCH----HHHhhhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHH
Confidence 3789999999999999998777 3443321 111 22234444433331 123433 4689999999999999
Q ss_pred HHHHHHHHcCCCccccccccc
Q psy9001 394 NLRWYLDEYQFDGFRFDGVTS 414 (1351)
Q Consensus 394 ~l~~W~~e~~vDGfR~D~a~~ 414 (1351)
.++..+.++|||||-+|....
T Consensus 146 ~~~~~~~~~Gvdg~w~D~~E~ 166 (303)
T cd06592 146 RLKSLQEKYGIDSFKFDAGEA 166 (303)
T ss_pred HHHHHHHHhCCcEEEeCCCCc
Confidence 999999889999999997653
No 125
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=95.67 E-value=0.05 Score=65.90 Aligned_cols=129 Identities=17% Similarity=0.158 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCC-CCCCccCCCCCHHHHHHHHHHHHH
Q psy9001 319 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHP-LWDSRLFNYSEIEVLRFLLSNLRW 397 (1351)
Q Consensus 319 ~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~-~w~~~~ln~~~p~v~~~l~~~l~~ 397 (1351)
|+-|+.|++.+|++||+.=|=+-+--++.++.. + ..++.|....+..... ......||+++|+|++++.+.+.-
T Consensus 103 P~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~~S~l----~-~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ 177 (394)
T PF02065_consen 103 PNGLKPLADYIHSLGMKFGLWFEPEMVSPDSDL----Y-REHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDR 177 (394)
T ss_dssp TTHHHHHHHHHHHTT-EEEEEEETTEEESSSCH----C-CSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHCCCeEEEEeccccccchhHH----H-HhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHH
Confidence 356999999999999999888877666554321 1 1112232221111111 111135999999999999999999
Q ss_pred HHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEE
Q psy9001 398 YLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIA 464 (1351)
Q Consensus 398 W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~ia 464 (1351)
.++++|||.+.+|....+.. ...... . ..-..-..=+-++-+.+++.+|++++-.
T Consensus 178 ll~~~gidYiK~D~n~~~~~-------~~~~~~----~-~~~~~~~~~~y~l~~~L~~~~P~v~iE~ 232 (394)
T PF02065_consen 178 LLREWGIDYIKWDFNRDITE-------AGSPSL----P-EGYHRYVLGLYRLLDRLRARFPDVLIEN 232 (394)
T ss_dssp HHHHTT-SEEEEE-TS-TTS--------SSTTS------GHHHHHHHHHHHHHHHHHHHTTTSEEEE
T ss_pred HHHhcCCCEEEeccccCCCC-------CCCCCc----h-HHHHHHHHHHHHHHHHHHHhCCCcEEEe
Confidence 99999999999998765521 000000 0 0000001112246677889999987743
No 126
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=95.62 E-value=0.013 Score=69.04 Aligned_cols=92 Identities=12% Similarity=0.136 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCC---CCCCC--CccCCCCCHHHHHHHHHHH
Q psy9001 321 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGT---HPLWD--SRLFNYSEIEVLRFLLSNL 395 (1351)
Q Consensus 321 efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~---~~~w~--~~~ln~~~p~v~~~l~~~l 395 (1351)
+.++||+++|++|++|++-+ -.+...+.... .-.+....|+..++.+. ...|. +..+|+.||++++...+.+
T Consensus 72 dp~~mi~~Lh~~G~~~~~~i-~P~v~~~~~~~--y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~ 148 (317)
T cd06594 72 GLDELIEELKARGIRVLTYI-NPYLADDGPLY--YEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVI 148 (317)
T ss_pred CHHHHHHHHHHCCCEEEEEe-cCceecCCchh--HHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHH
Confidence 36899999999999999954 44544432110 01222234444443332 12333 3568999999999999999
Q ss_pred HHHHHHcCCCcccccccccc
Q psy9001 396 RWYLDEYQFDGFRFDGVTSM 415 (1351)
Q Consensus 396 ~~W~~e~~vDGfR~D~a~~~ 415 (1351)
+..+.++|||||-+|+...+
T Consensus 149 ~~~~~~~Gvdg~w~D~~E~~ 168 (317)
T cd06594 149 KEMLLDLGLSGWMADFGEYL 168 (317)
T ss_pred HHHhhhcCCcEEEecCCCCC
Confidence 99877799999999976543
No 127
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.59 E-value=0.039 Score=66.52 Aligned_cols=134 Identities=16% Similarity=0.182 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccccCCcc-------ccCcCCCCCCCccccCCCCCCCCCC-CCCCCCCCCHHHHHH
Q psy9001 1032 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVL-------DGLNEFDGTQACFFHDGPRGTHPLW-DSRLFNYSEIEVLRF 1103 (1351)
Q Consensus 1032 ~edfK~LV~~aH~~GI~VILDVV~NHts~~~~-------~~l~~~dg~~~~yf~~~~~g~~~~w-~~~dlN~~np~Vr~~ 1103 (1351)
-+=|..+|++||++||+|+-=+-+--++.... .++..-. ...-|+.. ..| ..--||-.+|+||++
T Consensus 114 ~DpLa~~I~~AHkr~l~v~aWf~~~~~a~~~s~~~~~~p~~~~~~~-~~~~~~~~------~~~~~~~~ldPg~Pevq~~ 186 (418)
T COG1649 114 YDPLAFVIAEAHKRGLEVHAWFNPYRMAPPTSPLTKRHPHWLTTKR-PGWVYVRH------QGWGKRVWLDPGIPEVQDF 186 (418)
T ss_pred CChHHHHHHHHHhcCCeeeechhhcccCCCCChhHhhCCCCcccCC-CCeEEEec------CCceeeeEeCCCChHHHHH
Confidence 45588999999999999997765554444321 1111100 00011111 111 112488999999999
Q ss_pred HHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCC----cCChh---------HHHHHHHHHHHHHhhC
Q psy9001 1104 LLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGL----NVDTD---------ALIYLMVANKFLHDKY 1170 (1351)
Q Consensus 1104 lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~----~~d~~---------~~~fl~~~~~~l~~~~ 1170 (1351)
|.+.+.--++.|.|||.-||---... ...|....-...| ++++ ..+.. ...|++.++..|++++
T Consensus 187 i~~lv~evV~~YdvDGIQfDd~fy~~-~~~gy~~~~~~~y--~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VKavK 263 (418)
T COG1649 187 ITSLVVEVVRNYDVDGIQFDDYFYYP-IPFGYDPDTVTLY--RYETGKGPPSNPDQWTDWRRDNITALVAQISQTVKAVK 263 (418)
T ss_pred HHHHHHHHHhCCCCCceecceeeccc-CccccCchHHHHH--HhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHhhC
Confidence 99999999999999999999765421 1111111000000 1111 11222 3457889999999999
Q ss_pred CCeEE
Q psy9001 1171 PEIIT 1175 (1351)
Q Consensus 1171 Pd~il 1175 (1351)
|++++
T Consensus 264 p~v~~ 268 (418)
T COG1649 264 PNVKF 268 (418)
T ss_pred CCeEE
Confidence 99766
No 128
>KOG3625|consensus
Probab=95.35 E-value=0.024 Score=71.65 Aligned_cols=35 Identities=23% Similarity=0.223 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHHH-cCCEEEEEeeccccccCCcCC
Q psy9001 318 TPEQLKYLVDECHK-AGLYVLLDVVHSHASKNVLDG 352 (1351)
Q Consensus 318 ~~~efk~LV~~~H~-~GI~VILDvV~NH~~~~~~~~ 352 (1351)
+.+|.++||+.||+ -||--|-|||+|||+.++.|-
T Consensus 194 s~eDV~~lV~~l~rewnvlsi~DvV~NHtAnns~Wl 229 (1521)
T KOG3625|consen 194 SFEDVGQLVEKLKREWNVLSITDVVYNHTANNSKWL 229 (1521)
T ss_pred CHHHHHHHHHHHHhhcCeeeeehhhhhccccCCchh
Confidence 68999999999998 699999999999999987553
No 129
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=95.21 E-value=0.024 Score=66.95 Aligned_cols=91 Identities=16% Similarity=0.196 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCC---CCCCCC--ccCCCCCHHHHHHHHHHH
Q psy9001 321 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGT---HPLWDS--RLFNYSEIEVLRFLLSNL 395 (1351)
Q Consensus 321 efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~---~~~w~~--~~ln~~~p~v~~~l~~~l 395 (1351)
+.++||+++|++|++|++=+.+- ...+... .....+....||.....+. ...|.+ .-+|+.||+++++..+.+
T Consensus 65 dp~~~i~~l~~~g~k~~~~~~P~-i~~~~~~-~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~ 142 (317)
T cd06600 65 EPKKLIDELHKRNVKLVTIVDPG-IRVDQNY-SPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLF 142 (317)
T ss_pred CHHHHHHHHHHCCCEEEEEeecc-ccCCCCC-hHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHH
Confidence 35799999999999999855443 3322110 0001222234444333322 123443 468999999999999999
Q ss_pred HHHHHHcCCCcccccccc
Q psy9001 396 RWYLDEYQFDGFRFDGVT 413 (1351)
Q Consensus 396 ~~W~~e~~vDGfR~D~a~ 413 (1351)
+..+.+.|||||-+|...
T Consensus 143 ~~~~~~~gvdg~w~D~~E 160 (317)
T cd06600 143 SEWLNSQGVDGIWLDMNE 160 (317)
T ss_pred HHHhhcCCCceEEeeCCC
Confidence 999877999999999654
No 130
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=95.20 E-value=0.028 Score=66.32 Aligned_cols=91 Identities=16% Similarity=0.195 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCC---CCCCCC--CCCCCCCHHHHHHHHHHH
Q psy9001 1034 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGT---HPLWDS--RLFNYSEIEVLRFLLSNL 1108 (1351)
Q Consensus 1034 dfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~---~~~w~~--~dlN~~np~Vr~~lid~l 1108 (1351)
+.++||+.+|++|++|++=+. .+.+.+..... ...+....||.....+. ...|.+ .-+|+.||++++...+.+
T Consensus 65 dp~~~i~~l~~~g~k~~~~~~-P~i~~~~~~~~-~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~ 142 (317)
T cd06600 65 EPKKLIDELHKRNVKLVTIVD-PGIRVDQNYSP-FLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLF 142 (317)
T ss_pred CHHHHHHHHHHCCCEEEEEee-ccccCCCCChH-HHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHH
Confidence 457999999999999999653 34433210000 01112234444333332 223433 358999999999999999
Q ss_pred HHHHHHhCCCeEEEcCcc
Q psy9001 1109 RWYLEEYQFDGFRFDGVT 1126 (1351)
Q Consensus 1109 ~yWl~eygVDGFRfD~a~ 1126 (1351)
+..+.++|||||=+|...
T Consensus 143 ~~~~~~~gvdg~w~D~~E 160 (317)
T cd06600 143 SEWLNSQGVDGIWLDMNE 160 (317)
T ss_pred HHHhhcCCCceEEeeCCC
Confidence 998878999999999765
No 131
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=94.88 E-value=0.043 Score=64.80 Aligned_cols=89 Identities=12% Similarity=0.236 Sum_probs=58.4
Q ss_pred HHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCC--CCCCCC--CCCCCCCHHHHHHHHHHHHH
Q psy9001 1035 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGT--HPLWDS--RLFNYSEIEVLRFLLSNLRW 1110 (1351)
Q Consensus 1035 fK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~--~~~w~~--~dlN~~np~Vr~~lid~l~y 1110 (1351)
.++||+++|++|++||+-+. .+.+.+... +. ++....||.....+. ...|.+ .-+|+.||++++...+.++-
T Consensus 68 p~~mi~~L~~~G~kv~~~i~-P~v~~~~~~-y~--e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~ 143 (319)
T cd06591 68 PKAMVRELHEMNAELMISIW-PTFGPETEN-YK--EMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKK 143 (319)
T ss_pred HHHHHHHHHHCCCEEEEEec-CCcCCCChh-HH--HHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHH
Confidence 57899999999999999543 444433210 00 111223444333222 234533 46999999999998887766
Q ss_pred HHHHhCCCeEEEcCccc
Q psy9001 1111 YLEEYQFDGFRFDGVTS 1127 (1351)
Q Consensus 1111 Wl~eygVDGFRfD~a~~ 1127 (1351)
-+.++|||||=+|....
T Consensus 144 ~~~~~Gvdg~w~D~~Ep 160 (319)
T cd06591 144 NYYDKGVDAWWLDAAEP 160 (319)
T ss_pred HhhcCCCcEEEecCCCC
Confidence 56678999999999863
No 132
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=94.77 E-value=0.048 Score=64.36 Aligned_cols=89 Identities=13% Similarity=0.208 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCC----CCCCCC--CCCCCCCHHHHHHHHHH
Q psy9001 1034 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGT----HPLWDS--RLFNYSEIEVLRFLLSN 1107 (1351)
Q Consensus 1034 dfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~----~~~w~~--~dlN~~np~Vr~~lid~ 1107 (1351)
+.++||+++|++|++|++-+. .+.+.++. .+. .+....||.....+. ...|.+ .-+|+.||++++...+.
T Consensus 74 dp~~mi~~L~~~g~k~~~~i~-P~i~~~~~-~y~--e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~ 149 (317)
T cd06599 74 DPAAFVAKFHERGIRLAPNIK-PGLLQDHP-RYK--ELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEG 149 (317)
T ss_pred CHHHHHHHHHHCCCEEEEEeC-CcccCCCH-HHH--HHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHH
Confidence 467999999999999999554 33433321 000 112223443322221 223433 35999999999999999
Q ss_pred HHHHHHHhCCCeEEEcCcc
Q psy9001 1108 LRWYLEEYQFDGFRFDGVT 1126 (1351)
Q Consensus 1108 l~yWl~eygVDGFRfD~a~ 1126 (1351)
++.-+.+.|||||=+|...
T Consensus 150 ~~~~~~~~Gvdg~w~D~~E 168 (317)
T cd06599 150 VKEALLDLGIDSTWNDNNE 168 (317)
T ss_pred HHHHHhcCCCcEEEecCCC
Confidence 9777777899999999775
No 133
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=94.72 E-value=0.048 Score=64.96 Aligned_cols=90 Identities=18% Similarity=0.275 Sum_probs=59.6
Q ss_pred HHHHHHHHHcCCEEEEEeeccccccCC-cCCcccC-CCCCCcCcccCCCCCC---CCCCC--ccCCCCCHHHHHHHHHHH
Q psy9001 323 KYLVDECHKAGLYVLLDVVHSHASKNV-LDGLNEF-DGTQACFFHDGPRGTH---PLWDS--RLFNYSEIEVLRFLLSNL 395 (1351)
Q Consensus 323 k~LV~~~H~~GI~VILDvV~NH~~~~~-~~~~~~f-~g~~~~yy~~~~~~~~---~~w~~--~~ln~~~p~v~~~l~~~l 395 (1351)
++||+++|++|++|++=+.+ |...+. ......| .+....||..+..+.. ..|.+ .-+|+.||++++...+.+
T Consensus 69 ~~mi~~L~~~G~k~~~~i~P-~v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~ 147 (339)
T cd06602 69 PEFVDELHANGQHYVPILDP-AISANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEI 147 (339)
T ss_pred HHHHHHHHHCCCEEEEEEeC-ccccCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHH
Confidence 89999999999999996554 333221 0011111 1222334444333321 23333 458999999999999999
Q ss_pred HHHHHHcCCCcccccccc
Q psy9001 396 RWYLDEYQFDGFRFDGVT 413 (1351)
Q Consensus 396 ~~W~~e~~vDGfR~D~a~ 413 (1351)
+..++++|||||-+|...
T Consensus 148 ~~~~~~~Gvdg~w~D~~E 165 (339)
T cd06602 148 KDFHDQVPFDGLWIDMNE 165 (339)
T ss_pred HHHHhcCCCcEEEecCCC
Confidence 999988999999999754
No 134
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=94.62 E-value=0.044 Score=64.71 Aligned_cols=88 Identities=13% Similarity=0.249 Sum_probs=58.2
Q ss_pred HHHHHHHHHHcCCEEEEEeeccccccCCcCCcccC-CCCCCcCcccCCCCC--CCCCCC--ccCCCCCHHHHHHHHHHHH
Q psy9001 322 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-DGTQACFFHDGPRGT--HPLWDS--RLFNYSEIEVLRFLLSNLR 396 (1351)
Q Consensus 322 fk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f-~g~~~~yy~~~~~~~--~~~w~~--~~ln~~~p~v~~~l~~~l~ 396 (1351)
.++||+++|++|++||+-+. -+...+.. .| .+....||..+..+. ...|.+ ..+|+.||+++++..+.++
T Consensus 68 p~~mi~~L~~~G~kv~~~i~-P~v~~~~~----~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~ 142 (319)
T cd06591 68 PKAMVRELHEMNAELMISIW-PTFGPETE----NYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLK 142 (319)
T ss_pred HHHHHHHHHHCCCEEEEEec-CCcCCCCh----hHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHH
Confidence 57899999999999999553 34443321 11 111123443333222 133543 5799999999999888877
Q ss_pred HHHHHcCCCccccccccc
Q psy9001 397 WYLDEYQFDGFRFDGVTS 414 (1351)
Q Consensus 397 ~W~~e~~vDGfR~D~a~~ 414 (1351)
.-+.++|||||-+|....
T Consensus 143 ~~~~~~Gvdg~w~D~~Ep 160 (319)
T cd06591 143 KNYYDKGVDAWWLDAAEP 160 (319)
T ss_pred HHhhcCCCcEEEecCCCC
Confidence 666679999999998763
No 135
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=94.45 E-value=0.047 Score=66.00 Aligned_cols=44 Identities=32% Similarity=0.359 Sum_probs=37.8
Q ss_pred ccccccccCCCCC------HHHHHHHHHHHH-HcCCEEEEEeecccccCCc
Q psy9001 1019 LVDECHKAGLFGT------PEQLKYLVDECH-KAGLYVLLDVVHSHASKNV 1062 (1351)
Q Consensus 1019 ~~Dy~~idp~yGt------~edfK~LV~~aH-~~GI~VILDVV~NHts~~~ 1062 (1351)
+.|...+||.+.. .+++++||.+++ +.||.+|.|||+|||+.+.
T Consensus 56 I~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~DvV~NHtA~nS 106 (423)
T PF14701_consen 56 IYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDVVLNHTANNS 106 (423)
T ss_pred ccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEEeeccCcCCC
Confidence 6677888877544 479999999995 7999999999999999987
No 136
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=94.29 E-value=0.083 Score=62.99 Aligned_cols=90 Identities=17% Similarity=0.277 Sum_probs=59.4
Q ss_pred HHHHHHHHHcCCEEEEEeecccccCCc-cccCcCC-CCCCCccccCCCCCCC---CCCC--CCCCCCCCHHHHHHHHHHH
Q psy9001 1036 KYLVDECHKAGLYVLLDVVHSHASKNV-LDGLNEF-DGTQACFFHDGPRGTH---PLWD--SRLFNYSEIEVLRFLLSNL 1108 (1351)
Q Consensus 1036 K~LV~~aH~~GI~VILDVV~NHts~~~-~~~l~~~-dg~~~~yf~~~~~g~~---~~w~--~~dlN~~np~Vr~~lid~l 1108 (1351)
++||+++|++|++|++=+. -|...+. ......+ ++....||..+..|.. ..|. +.-+|+.||++|+...+.+
T Consensus 69 ~~mi~~L~~~G~k~~~~i~-P~v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~ 147 (339)
T cd06602 69 PEFVDELHANGQHYVPILD-PAISANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEI 147 (339)
T ss_pred HHHHHHHHHCCCEEEEEEe-CccccCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHH
Confidence 8999999999999999754 3333321 0000001 1122234443333321 2332 2358999999999999999
Q ss_pred HHHHHHhCCCeEEEcCcc
Q psy9001 1109 RWYLEEYQFDGFRFDGVT 1126 (1351)
Q Consensus 1109 ~yWl~eygVDGFRfD~a~ 1126 (1351)
+..++++|||||=+|...
T Consensus 148 ~~~~~~~Gvdg~w~D~~E 165 (339)
T cd06602 148 KDFHDQVPFDGLWIDMNE 165 (339)
T ss_pred HHHHhcCCCcEEEecCCC
Confidence 999998999999999765
No 137
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=94.10 E-value=0.064 Score=63.32 Aligned_cols=88 Identities=14% Similarity=0.228 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccC-CCCCCcCcccCCCCC----CCCCCC--ccCCCCCHHHHHHHHH
Q psy9001 321 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-DGTQACFFHDGPRGT----HPLWDS--RLFNYSEIEVLRFLLS 393 (1351)
Q Consensus 321 efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f-~g~~~~yy~~~~~~~----~~~w~~--~~ln~~~p~v~~~l~~ 393 (1351)
+.++||+++|++|++|++-+.+- .+.++. .| .+....||.....+. ...|.+ ..+|+.||+++++..+
T Consensus 74 dp~~mi~~L~~~g~k~~~~i~P~-i~~~~~----~y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~ 148 (317)
T cd06599 74 DPAAFVAKFHERGIRLAPNIKPG-LLQDHP----RYKELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKE 148 (317)
T ss_pred CHHHHHHHHHHCCCEEEEEeCCc-ccCCCH----HHHHHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHH
Confidence 46799999999999999855443 333221 11 112233443332222 123433 4689999999999999
Q ss_pred HHHHHHHHcCCCcccccccc
Q psy9001 394 NLRWYLDEYQFDGFRFDGVT 413 (1351)
Q Consensus 394 ~l~~W~~e~~vDGfR~D~a~ 413 (1351)
.++.-+.+.|||||-+|...
T Consensus 149 ~~~~~~~~~Gvdg~w~D~~E 168 (317)
T cd06599 149 GVKEALLDLGIDSTWNDNNE 168 (317)
T ss_pred HHHHHHhcCCCcEEEecCCC
Confidence 99777777999999999765
No 138
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=93.61 E-value=0.39 Score=60.57 Aligned_cols=155 Identities=17% Similarity=0.263 Sum_probs=75.0
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcC--cccCCCCC------CCCCCC--ccCCCCCH
Q psy9001 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACF--FHDGPRGT------HPLWDS--RLFNYSEI 385 (1351)
Q Consensus 316 ~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~y--y~~~~~~~------~~~w~~--~~ln~~~p 385 (1351)
.-..+-.|.+|++||+.||++|.=.-..-...+ ..-+|..+.+ |....... ...|.. ..+|..|+
T Consensus 166 ~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~~~-----~~~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~ 240 (559)
T PF13199_consen 166 QISTSTVKDYINAAHKYGMKAMAYNMIYAANNN-----YEEDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNP 240 (559)
T ss_dssp EEEHHHHHHHHHHHHHTT-EEEEEEESSEEETT-------S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-H
T ss_pred EehHHHHHHHHHHHHHcCcceehhHhhhccccC-----cccccCCchhhhhhccCCCccceeecCcccccceEEecCCCH
Confidence 334688999999999999998853222211111 0112333322 22221110 123544 46799999
Q ss_pred HHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCcc-CchHHHHHHHHHHHHHhhCCCeEEEE
Q psy9001 386 EVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNV-DTDALIYLMVANKFLHDKYPEIITIA 464 (1351)
Q Consensus 386 ~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~f~~~~~~~v~~~~P~~~~ia 464 (1351)
+-|++|++.+...++++|+|||.+|........ .++-|..+ ++.. .| ..+..++++..|+..++-
T Consensus 241 ~WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~~~~------------~d~~G~~i~~l~~-~y-~~Fi~~~K~~~~~k~lv~ 306 (559)
T PF13199_consen 241 EWQNYIINQMNKAIQNFGFDGWHLDQLGNRGTV------------YDYDGNKIYDLSD-GY-ASFINAMKEALPDKYLVF 306 (559)
T ss_dssp HHHHHHHHHHHHHHHHHT--EEEEE-S--EEEE------------GGTT---GGECHH-HH-HHHHHHHHHHSTTSEEEE
T ss_pred HHHHHHHHHHHHHHHccCCceEeeeccCCCCcc------------ccCCCCCchhhHH-HH-HHHHHHHHHhCCCCceee
Confidence 999999999999999999999999987743111 11112223 2221 22 333445556667777766
Q ss_pred EcCCCCCCcccccccCCCCCCCcCC--cCC
Q psy9001 465 EDVSGMPASCRPVTEGGTGFDYRLE--IRP 492 (1351)
Q Consensus 465 E~~~~~p~~~~~~~~gg~gfd~~~~--~~~ 492 (1351)
-...+++.-.... ...-|+.++ |..
T Consensus 307 N~V~~~g~~~~a~---~~~~d~lY~EvW~~ 333 (559)
T PF13199_consen 307 NAVSGYGIEQIAK---TSKVDFLYNEVWDD 333 (559)
T ss_dssp B-GGGTTHHHHTT----S--SSEEEE--SB
T ss_pred eccCccchhhhhc---ccccceeeeecccc
Confidence 6554444322111 144556666 743
No 139
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=93.52 E-value=0.087 Score=65.78 Aligned_cols=46 Identities=24% Similarity=0.321 Sum_probs=34.7
Q ss_pred CCCCCCCCccCCCCCHHHHHHHHHHHHHHHH---------HcCCCcccccccccc
Q psy9001 370 GTHPLWDSRLFNYSEIEVLRFLLSNLRWYLD---------EYQFDGFRFDGVTSM 415 (1351)
Q Consensus 370 ~~~~~w~~~~ln~~~p~v~~~l~~~l~~W~~---------e~~vDGfR~D~a~~~ 415 (1351)
+.+..--.+++|=+||.|+..-+.++.|.+. +..+||+|+|+|..+
T Consensus 136 gGyEfLLaNDVDNSNPvVQAEqLNwl~yLmN~GsI~~~d~daNFDgiRVDAvDNV 190 (809)
T PF02324_consen 136 GGYEFLLANDVDNSNPVVQAEQLNWLHYLMNFGSITANDPDANFDGIRVDAVDNV 190 (809)
T ss_dssp SS-S--SSEEE-TTSHHHHHHHHHHHHHHHTHHHHHHS-TTSS--EEEETTGGGS
T ss_pred CcceeEEeccccCCCchhhHHHHHHHHHHhhccccccCCCCCCcccEEeeccccc
Confidence 3444344678999999999999999999997 678999999999876
No 140
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=93.49 E-value=0.44 Score=56.09 Aligned_cols=135 Identities=13% Similarity=0.236 Sum_probs=82.5
Q ss_pred ccccccCCCCCHHH--H-HHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccC-----CC---CCCCCCC-
Q psy9001 1021 DECHKAGLFGTPEQ--L-KYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHD-----GP---RGTHPLW- 1088 (1351)
Q Consensus 1021 Dy~~idp~yGt~ed--f-K~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~-----~~---~g~~~~w- 1088 (1351)
|...|||..++.++ | ++=|+++|+.|.+||-=+- .+.-. ..+.||.. .+ .+..++|
T Consensus 66 d~vVID~~~~g~~~~~fs~~~i~~Lk~~g~~viaYlS---vGe~E---------~~R~y~~~~~~~~~~~~l~~~n~~W~ 133 (315)
T TIGR01370 66 ELVVIDYSKDGTEDGTYSPEEIVRAAAAGRWPIAYLS---IGAAE---------DYRFYWQKGWKVNAPAWLGNEDPDWP 133 (315)
T ss_pred CEEEEccccccCcccCCCHHHHHHHHhCCcEEEEEEE---chhcc---------ccchhhhhhhhcCCHHHhCCCCCCCC
Confidence 44556665541111 1 3456778899988763321 11111 11122221 01 2456778
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHh
Q psy9001 1089 DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHD 1168 (1351)
Q Consensus 1089 ~~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~ 1168 (1351)
+...+++.+++.|++|++-+.--++. |+|||=+|.+....+.... +.++. ....+-+.+++.+.+.+|+
T Consensus 134 g~~~vd~~~~~W~~il~~rl~~l~~k-GfDGvfLD~lDsy~~~~~~-~~~~~---------~~~~~m~~~i~~Ia~~ar~ 202 (315)
T TIGR01370 134 GNYDVKYWDPEWKAIAFSYLDRVIAQ-GFDGVYLDLIDAFEYWAEN-GDNRP---------GAAAEMIAFVCEIAAYARA 202 (315)
T ss_pred CceeEecccHHHHHHHHHHHHHHHHc-CCCeEeeccchhhhhhccc-CCcch---------hhHHHHHHHHHHHHHHHHH
Confidence 77789999999999999888776665 9999999999865321100 00000 0013346788888888999
Q ss_pred hCCCeEEEEc
Q psy9001 1169 KYPEIITIAE 1178 (1351)
Q Consensus 1169 ~~Pd~ilIaE 1178 (1351)
.+|++++|.-
T Consensus 203 ~~P~~~II~N 212 (315)
T TIGR01370 203 QNPQFVIIPQ 212 (315)
T ss_pred HCCCEEEEec
Confidence 9999999853
No 141
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=93.21 E-value=0.49 Score=59.68 Aligned_cols=93 Identities=18% Similarity=0.325 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccc--cCCCCCC------CCCCCC--CCCCCCCHHH
Q psy9001 1031 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFF--HDGPRGT------HPLWDS--RLFNYSEIEV 1100 (1351)
Q Consensus 1031 t~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf--~~~~~g~------~~~w~~--~dlN~~np~V 1100 (1351)
..+-.|.+|++||+.||++|.=.-+.-+..+.. .+|..+.|+ ....... ...|.+ .-+|-.|++=
T Consensus 168 ~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~~~~~-----~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~W 242 (559)
T PF13199_consen 168 STSTVKDYINAAHKYGMKAMAYNMIYAANNNYE-----EDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEW 242 (559)
T ss_dssp EHHHHHHHHHHHHHTT-EEEEEEESSEEETT-------S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HHH
T ss_pred hHHHHHHHHHHHHHcCcceehhHhhhccccCcc-----cccCCchhhhhhccCCCccceeecCcccccceEEecCCCHHH
Confidence 378899999999999999987543332222210 133333333 2222110 123433 3579999999
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEcCcccc
Q psy9001 1101 LRFLLSNLRWYLEEYQFDGFRFDGVTSM 1128 (1351)
Q Consensus 1101 r~~lid~l~yWl~eygVDGFRfD~a~~m 1128 (1351)
|++|++.+...++++|+|||.+|.++..
T Consensus 243 Q~yI~~q~~~~~~~~gFDG~hlDq~G~~ 270 (559)
T PF13199_consen 243 QNYIINQMNKAIQNFGFDGWHLDQLGNR 270 (559)
T ss_dssp HHHHHHHHHHHHHHHT--EEEEE-S--E
T ss_pred HHHHHHHHHHHHHccCCceEeeeccCCC
Confidence 9999999999999999999999999744
No 142
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=92.20 E-value=3.1 Score=47.39 Aligned_cols=107 Identities=16% Similarity=0.166 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCC-CccCCCCCHHHHHHHHHHHHH
Q psy9001 319 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWD-SRLFNYSEIEVLRFLLSNLRW 397 (1351)
Q Consensus 319 ~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~-~~~ln~~~p~v~~~l~~~l~~ 397 (1351)
.+.|+++|++|+++||+||||+--. . .|. ........+...+++.+.++.
T Consensus 61 ~~~ld~~v~~a~~~gi~vild~h~~---~--------------------------~w~~~~~~~~~~~~~~~~~~~~~~~ 111 (281)
T PF00150_consen 61 LARLDRIVDAAQAYGIYVILDLHNA---P--------------------------GWANGGDGYGNNDTAQAWFKSFWRA 111 (281)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEEES---T--------------------------TCSSSTSTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEEEEeccC---c--------------------------cccccccccccchhhHHHHHhhhhh
Confidence 6789999999999999999988654 1 010 011222334456667777778
Q ss_pred HHHHcC----CCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEEEc
Q psy9001 398 YLDEYQ----FDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAED 466 (1351)
Q Consensus 398 W~~e~~----vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~iaE~ 466 (1351)
++..|. |-|| |.+.+.... ... ..+ .......-..+.+.+.++||+..|+..++.+.
T Consensus 112 la~~y~~~~~v~~~--el~NEP~~~----~~~-----~~w-~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~ 172 (281)
T PF00150_consen 112 LAKRYKDNPPVVGW--ELWNEPNGG----NDD-----ANW-NAQNPADWQDWYQRAIDAIRAADPNHLIIVGG 172 (281)
T ss_dssp HHHHHTTTTTTEEE--ESSSSGCST----TST-----TTT-SHHHTHHHHHHHHHHHHHHHHTTSSSEEEEEE
T ss_pred hccccCCCCcEEEE--EecCCcccc----CCc-----ccc-ccccchhhhhHHHHHHHHHHhcCCcceeecCC
Confidence 888772 2222 333222000 000 000 00001122468889999999999998888776
No 143
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=91.96 E-value=0.18 Score=60.15 Aligned_cols=89 Identities=19% Similarity=0.322 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccC-CCCCCcCcccCCCCC---CCCCCC--ccCCCCCHHHHHHHHHH
Q psy9001 321 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-DGTQACFFHDGPRGT---HPLWDS--RLFNYSEIEVLRFLLSN 394 (1351)
Q Consensus 321 efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f-~g~~~~yy~~~~~~~---~~~w~~--~~ln~~~p~v~~~l~~~ 394 (1351)
+.++||+++|++|++|++=+.+ |...+.. ...| .+....||....++. ...|.+ .-+|+.||+++++..+.
T Consensus 65 dp~~m~~~l~~~g~~~~~~~~P-~v~~~~~--~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~ 141 (339)
T cd06604 65 DPKELIKELHEQGFKVVTIIDP-GVKVDPG--YDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSL 141 (339)
T ss_pred CHHHHHHHHHHCCCEEEEEEeC-ceeCCCC--ChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHH
Confidence 3579999999999999976544 2222110 0111 122233443333332 123433 35799999999999999
Q ss_pred HHHHHHHcCCCcccccccc
Q psy9001 395 LRWYLDEYQFDGFRFDGVT 413 (1351)
Q Consensus 395 l~~W~~e~~vDGfR~D~a~ 413 (1351)
++..++ .|||||-+|...
T Consensus 142 ~~~~~~-~Gvdg~w~D~~E 159 (339)
T cd06604 142 YKKFVD-LGVDGIWNDMNE 159 (339)
T ss_pred HHHHhh-CCCceEeecCCC
Confidence 998774 899999999765
No 144
>PRK10658 putative alpha-glucosidase; Provisional
Probab=91.93 E-value=0.47 Score=61.44 Aligned_cols=90 Identities=12% Similarity=0.257 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCC---CCC--CCCCCCCCHHHHHHHHHHH
Q psy9001 1034 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHP---LWD--SRLFNYSEIEVLRFLLSNL 1108 (1351)
Q Consensus 1034 dfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~---~w~--~~dlN~~np~Vr~~lid~l 1108 (1351)
+.+.||+++|++|++|++=+.+ +...++. .+. .+....||...++|... .|. +.-+|+.||++|+...+.+
T Consensus 326 dp~~mi~~L~~~G~k~~~~i~P-~i~~~s~-~f~--e~~~~gy~vk~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~ 401 (665)
T PRK10658 326 DPEGMLKRLKAKGLKICVWINP-YIAQKSP-LFK--EGKEKGYLLKRPDGSVWQWDKWQPGMAIVDFTNPDACKWYADKL 401 (665)
T ss_pred CHHHHHHHHHHCCCEEEEeccC-CcCCCch-HHH--HHHHCCeEEECCCCCEeeeeecCCCceeecCCCHHHHHHHHHHH
Confidence 3568999999999999987654 3332220 000 12223455544444322 342 3469999999999999999
Q ss_pred HHHHHHhCCCeEEEcCcccc
Q psy9001 1109 RWYLEEYQFDGFRFDGVTSM 1128 (1351)
Q Consensus 1109 ~yWl~eygVDGFRfD~a~~m 1128 (1351)
+..++ +|||||-+|....+
T Consensus 402 ~~l~d-~Gvdgfw~D~gE~~ 420 (665)
T PRK10658 402 KGLLD-MGVDCFKTDFGERI 420 (665)
T ss_pred HHHHh-cCCcEEEecCCcee
Confidence 99776 69999999976544
No 145
>PRK10426 alpha-glucosidase; Provisional
Probab=91.69 E-value=0.57 Score=60.47 Aligned_cols=91 Identities=9% Similarity=0.088 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCC---CCC--CCCCCCCCCHHHHHHHHHHH
Q psy9001 1034 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTH---PLW--DSRLFNYSEIEVLRFLLSNL 1108 (1351)
Q Consensus 1034 dfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~---~~w--~~~dlN~~np~Vr~~lid~l 1108 (1351)
+.++||+++|++|++|++=+.+ |...+.. -.. ++....||..+.+|.. ..| .+.-+|+.||++|+...+.+
T Consensus 270 dp~~mi~~L~~~G~k~v~~i~P-~v~~~~~-~y~--e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~ 345 (635)
T PRK10426 270 QLDSRIKQLNEEGIQFLGYINP-YLASDGD-LCE--EAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVI 345 (635)
T ss_pred CHHHHHHHHHHCCCEEEEEEcC-ccCCCCH-HHH--HHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHH
Confidence 4678999999999999998654 2322210 000 0112234443333321 122 23469999999999999998
Q ss_pred HHHHHHhCCCeEEEcCcccc
Q psy9001 1109 RWYLEEYQFDGFRFDGVTSM 1128 (1351)
Q Consensus 1109 ~yWl~eygVDGFRfD~a~~m 1128 (1351)
+..+.++|||||=+|.-..+
T Consensus 346 ~~~~~~~Gvdg~w~D~~E~~ 365 (635)
T PRK10426 346 KKNMIGLGCSGWMADFGEYL 365 (635)
T ss_pred HHHHhhcCCCEEeeeCCCCC
Confidence 87777789999999976644
No 146
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=91.60 E-value=0.34 Score=56.65 Aligned_cols=85 Identities=18% Similarity=0.180 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy9001 1034 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLE 1113 (1351)
Q Consensus 1034 dfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~yWl~ 1113 (1351)
|.++||+++|++|++||+-+.+............. +..+.......-....+|+.||+.++...+.++.-+.
T Consensus 75 dp~~mi~~Lh~~G~k~v~~v~P~~~~~~~~~~y~~--------~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~ 146 (292)
T cd06595 75 DPEKLLQDLHDRGLKVTLNLHPADGIRAHEDQYPE--------MAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLE 146 (292)
T ss_pred CHHHHHHHHHHCCCEEEEEeCCCcccCCCcHHHHH--------HHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHH
Confidence 45899999999999999988664311111000000 1100000000001125799999999987777766677
Q ss_pred HhCCCeEEEcCcc
Q psy9001 1114 EYQFDGFRFDGVT 1126 (1351)
Q Consensus 1114 eygVDGFRfD~a~ 1126 (1351)
++|||||=.|.-.
T Consensus 147 ~~Gidg~W~D~~E 159 (292)
T cd06595 147 KQGVDFWWLDWQQ 159 (292)
T ss_pred hcCCcEEEecCCC
Confidence 7899999999643
No 147
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=91.58 E-value=0.24 Score=59.09 Aligned_cols=89 Identities=19% Similarity=0.322 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHcCCEEEEEeecccccCCccccCcCC-CCCCCccccCCCCCC---CCCCC--CCCCCCCCHHHHHHHHHH
Q psy9001 1034 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-DGTQACFFHDGPRGT---HPLWD--SRLFNYSEIEVLRFLLSN 1107 (1351)
Q Consensus 1034 dfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~-dg~~~~yf~~~~~g~---~~~w~--~~dlN~~np~Vr~~lid~ 1107 (1351)
+.++||+++|++|++|++=+.+ |...+.. ...+ .+....||.....|. ...|. +.-+|+.||++++...+.
T Consensus 65 dp~~m~~~l~~~g~~~~~~~~P-~v~~~~~--~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~ 141 (339)
T cd06604 65 DPKELIKELHEQGFKVVTIIDP-GVKVDPG--YDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSL 141 (339)
T ss_pred CHHHHHHHHHHCCCEEEEEEeC-ceeCCCC--ChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHH
Confidence 3579999999999999987543 3322110 0000 111223443333332 12342 234899999999999999
Q ss_pred HHHHHHHhCCCeEEEcCcc
Q psy9001 1108 LRWYLEEYQFDGFRFDGVT 1126 (1351)
Q Consensus 1108 l~yWl~eygVDGFRfD~a~ 1126 (1351)
++..+ +.|||||=+|...
T Consensus 142 ~~~~~-~~Gvdg~w~D~~E 159 (339)
T cd06604 142 YKKFV-DLGVDGIWNDMNE 159 (339)
T ss_pred HHHHh-hCCCceEeecCCC
Confidence 99877 5799999999875
No 148
>PLN02950 4-alpha-glucanotransferase
Probab=91.56 E-value=3.5 Score=55.28 Aligned_cols=139 Identities=14% Similarity=0.122 Sum_probs=75.5
Q ss_pred CceeEEE--------EEEEEEEee---cCCCCcc-ccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCceee
Q psy9001 67 KAGLLCF--------MHVVCAAGD---FNNWNRE-EFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLD 134 (1351)
Q Consensus 67 ~~gv~F~--------A~~V~LvGD---FN~Wd~~-~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~~ 134 (1351)
+..|+|. -++|.|+|+ +-+|+.. ..+|.......|++.+.-. .+. .--.|||.+.+.+|...+
T Consensus 152 ~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~~~~p~W~~~v~lp-~~~----~~~EYKyv~~~~~g~v~W 226 (909)
T PLN02950 152 EIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNYTGDSIWEADCLVP-KSD----FPIKYKYALQTAEGLVSL 226 (909)
T ss_pred ceeEEEEEecCccCCCCeEEEEechhhcCCCCcccccccccCCCCcEEEEEEec-CCC----ceEEEEEEEEcCCCceEE
Confidence 3457888 357889984 5689864 4677766788999998421 110 113899999876665443
Q ss_pred ccCCcceEEecCCCCccceeeeeeCCCCCCCCccCCCCCCCCCCceEEEEecCCccCC--CCCCCHHHHHHhhhHHHHHc
Q psy9001 135 RLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQE--QKCASYEDFVRVVIPRIVKQ 212 (1351)
Q Consensus 135 ~~DPyA~~~~~~~~~~~~~~~~~~~p~~~~~~~w~~~~p~~~~~~vIYE~hvr~ft~~--~~~G~~~gi~~~~L~yLk~L 212 (1351)
-..+=.. +..+..... -...+..+.. ... .+.....-++ +|+-+.... -+.|+|.++. +.++.+++.
T Consensus 227 E~g~NR~-~~~p~~~~~-~~~~~~~~~~----~~~--~~~~R~~Gi~--~~l~SLrS~~s~GIGDf~dl~-~~id~~a~~ 295 (909)
T PLN02950 227 ELGVNRE-LSLDSSSGK-PPSYIVASDG----AFR--EMPWRGAGVA--VPVFSIRSEEDVGVGEFLDLK-LLVDWAVKS 295 (909)
T ss_pred eeCCCce-eecCcccCC-ceEEEecccc----ccc--CCCccceEEE--EecccCCCCCCCCeeCHHHHH-HHHHHHHHc
Confidence 2222221 111111000 0011111110 111 1111122222 233222122 3689998765 469999999
Q ss_pred CCCcCceeEEEee
Q psy9001 213 GMAIPDKWIELLK 225 (1351)
Q Consensus 213 Gvt~~~~~I~L~P 225 (1351)
|.+. |+|+|
T Consensus 296 G~~~----~QilP 304 (909)
T PLN02950 296 GLHL----VQLLP 304 (909)
T ss_pred CCCE----EEECC
Confidence 9999 99999
No 149
>PRK10426 alpha-glucosidase; Provisional
Probab=91.40 E-value=0.6 Score=60.23 Aligned_cols=90 Identities=9% Similarity=0.109 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccC-CCCCCcCcccCCCCCC---CCCC--CccCCCCCHHHHHHHHHH
Q psy9001 321 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-DGTQACFFHDGPRGTH---PLWD--SRLFNYSEIEVLRFLLSN 394 (1351)
Q Consensus 321 efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f-~g~~~~yy~~~~~~~~---~~w~--~~~ln~~~p~v~~~l~~~ 394 (1351)
+.++||+++|++|++|++=+-+-= ..+.. .| .+....||..+.++.. ..|. +..+|+.||++|+...+.
T Consensus 270 dp~~mi~~L~~~G~k~v~~i~P~v-~~~~~----~y~e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~ 344 (635)
T PRK10426 270 QLDSRIKQLNEEGIQFLGYINPYL-ASDGD----LCEEAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEV 344 (635)
T ss_pred CHHHHHHHHHHCCCEEEEEEcCcc-CCCCH----HHHHHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHH
Confidence 468899999999999998765532 22211 11 1122334443333221 1232 346899999999999999
Q ss_pred HHHHHHHcCCCcccccccccc
Q psy9001 395 LRWYLDEYQFDGFRFDGVTSM 415 (1351)
Q Consensus 395 l~~W~~e~~vDGfR~D~a~~~ 415 (1351)
++..+.+.|||||-+|....+
T Consensus 345 ~~~~~~~~Gvdg~w~D~~E~~ 365 (635)
T PRK10426 345 IKKNMIGLGCSGWMADFGEYL 365 (635)
T ss_pred HHHHHhhcCCCEEeeeCCCCC
Confidence 987777799999999976543
No 150
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=91.23 E-value=0.33 Score=57.41 Aligned_cols=87 Identities=13% Similarity=0.197 Sum_probs=56.0
Q ss_pred HHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCcc-ccCCCCCC---CCCC--CCCCCCCCCHHHHHHHHHHH
Q psy9001 1035 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACF-FHDGPRGT---HPLW--DSRLFNYSEIEVLRFLLSNL 1108 (1351)
Q Consensus 1035 fK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~y-f~~~~~g~---~~~w--~~~dlN~~np~Vr~~lid~l 1108 (1351)
.++||+.+|++|++|++=+.+ +...++.. +. .+....| +.....+. ...| .+.-+|+.||++++...+.+
T Consensus 72 p~~mi~~L~~~G~k~~~~v~P-~v~~~~~~-y~--e~~~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~ 147 (317)
T cd06598 72 PAGMIADLAKKGVKTIVITEP-FVLKNSKN-WG--EAVKAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNY 147 (317)
T ss_pred HHHHHHHHHHcCCcEEEEEcC-cccCCchh-HH--HHHhCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHH
Confidence 478999999999999998742 33322210 00 0111122 33222221 1233 24468999999999999999
Q ss_pred HHHHHHhCCCeEEEcCcc
Q psy9001 1109 RWYLEEYQFDGFRFDGVT 1126 (1351)
Q Consensus 1109 ~yWl~eygVDGFRfD~a~ 1126 (1351)
+.. .++|||||=+|...
T Consensus 148 ~~~-~~~Gvdg~w~D~~E 164 (317)
T cd06598 148 KKL-IDQGVTGWWGDLGE 164 (317)
T ss_pred HHh-hhCCccEEEecCCC
Confidence 887 55799999999874
No 151
>PRK10658 putative alpha-glucosidase; Provisional
Probab=91.14 E-value=0.23 Score=64.19 Aligned_cols=89 Identities=15% Similarity=0.305 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccC-CCCCCcCcccCCCCCC---CCCC--CccCCCCCHHHHHHHHHH
Q psy9001 321 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-DGTQACFFHDGPRGTH---PLWD--SRLFNYSEIEVLRFLLSN 394 (1351)
Q Consensus 321 efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f-~g~~~~yy~~~~~~~~---~~w~--~~~ln~~~p~v~~~l~~~ 394 (1351)
+.+.||+++|++|++|++=+.+ +...++. .| .+....||..+++|.. ..|. ..-+|+.||++|++..+.
T Consensus 326 dp~~mi~~L~~~G~k~~~~i~P-~i~~~s~----~f~e~~~~gy~vk~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~ 400 (665)
T PRK10658 326 DPEGMLKRLKAKGLKICVWINP-YIAQKSP----LFKEGKEKGYLLKRPDGSVWQWDKWQPGMAIVDFTNPDACKWYADK 400 (665)
T ss_pred CHHHHHHHHHHCCCEEEEeccC-CcCCCch----HHHHHHHCCeEEECCCCCEeeeeecCCCceeecCCCHHHHHHHHHH
Confidence 4578999999999999987655 3332211 11 1223345555444432 2353 356899999999999999
Q ss_pred HHHHHHHcCCCcccccccccc
Q psy9001 395 LRWYLDEYQFDGFRFDGVTSM 415 (1351)
Q Consensus 395 l~~W~~e~~vDGfR~D~a~~~ 415 (1351)
++..++ .|||||-.|....+
T Consensus 401 ~~~l~d-~Gvdgfw~D~gE~~ 420 (665)
T PRK10658 401 LKGLLD-MGVDCFKTDFGERI 420 (665)
T ss_pred HHHHHh-cCCcEEEecCCcee
Confidence 999776 89999999965543
No 152
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=90.84 E-value=1.8 Score=51.09 Aligned_cols=85 Identities=19% Similarity=0.261 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccc---cccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHH
Q psy9001 319 PEQLKYLVDECHKAGLYVLLDVVHSH---ASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNL 395 (1351)
Q Consensus 319 ~~efk~LV~~~H~~GI~VILDvV~NH---~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l 395 (1351)
+.++++|++.||++||.+|-=+|.=- .+..++ -+.+......-|.+.. ...| +|-.+++|++|+++.+
T Consensus 60 i~D~~~l~~~l~e~gIY~IARIv~FkD~~la~~~p--e~av~~~~G~~w~d~~---~~~W----vnP~~~evw~Y~i~IA 130 (316)
T PF13200_consen 60 IKDLKALVKKLKEHGIYPIARIVVFKDPVLAEAHP--EWAVKTKDGSVWRDNE---GEAW----VNPYSKEVWDYNIDIA 130 (316)
T ss_pred ccCHHHHHHHHHHCCCEEEEEEEEecChHHhhhCh--hhEEECCCCCcccCCC---CCcc----CCCCCHHHHHHHHHHH
Confidence 57899999999999999999887411 111110 0111111111111110 1123 7889999999999999
Q ss_pred HHHHHHcCCCcccccccc
Q psy9001 396 RWYLDEYQFDGFRFDGVT 413 (1351)
Q Consensus 396 ~~W~~e~~vDGfR~D~a~ 413 (1351)
+--++ .|+|..-||-+-
T Consensus 131 ~Eaa~-~GFdEIqfDYIR 147 (316)
T PF13200_consen 131 KEAAK-LGFDEIQFDYIR 147 (316)
T ss_pred HHHHH-cCCCEEEeeeee
Confidence 99887 899999999643
No 153
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=90.82 E-value=0.38 Score=56.24 Aligned_cols=85 Identities=15% Similarity=0.191 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHH
Q psy9001 321 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLD 400 (1351)
Q Consensus 321 efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~~W~~ 400 (1351)
+.++||+++|++|++||+-+.+......... .+.. +..........-....+|+.||+.++...+.+..-+.
T Consensus 75 dp~~mi~~Lh~~G~k~v~~v~P~~~~~~~~~---~y~~-----~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~ 146 (292)
T cd06595 75 DPEKLLQDLHDRGLKVTLNLHPADGIRAHED---QYPE-----MAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLE 146 (292)
T ss_pred CHHHHHHHHHHCCCEEEEEeCCCcccCCCcH---HHHH-----HHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHH
Confidence 4589999999999999998877532111000 0000 0000000000001135799999999988787777677
Q ss_pred HcCCCcccccccc
Q psy9001 401 EYQFDGFRFDGVT 413 (1351)
Q Consensus 401 e~~vDGfR~D~a~ 413 (1351)
++|||||-.|...
T Consensus 147 ~~Gidg~W~D~~E 159 (292)
T cd06595 147 KQGVDFWWLDWQQ 159 (292)
T ss_pred hcCCcEEEecCCC
Confidence 7999999999643
No 154
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=90.49 E-value=0.14 Score=63.13 Aligned_cols=92 Identities=22% Similarity=0.426 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHcCCEEEEEeecccccCCcc--ccCcCCCCCCCccccCCCCCC---CCCCC--CCCCCCCCHHHHHHHHH
Q psy9001 1034 QLKYLVDECHKAGLYVLLDVVHSHASKNVL--DGLNEFDGTQACFFHDGPRGT---HPLWD--SRLFNYSEIEVLRFLLS 1106 (1351)
Q Consensus 1034 dfK~LV~~aH~~GI~VILDVV~NHts~~~~--~~l~~~dg~~~~yf~~~~~g~---~~~w~--~~dlN~~np~Vr~~lid 1106 (1351)
++++||+.+|++|++|++-+.+ +...... ..+.. +....++...+.+. ...|. +.-+|+.||++++...+
T Consensus 84 d~~~~~~~l~~~G~~~~~~~~P-~v~~~~~~~~~~~~--~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~ 160 (441)
T PF01055_consen 84 DPKQMIDELHDQGIKVVLWVHP-FVSNDSPDYENYDE--AKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKE 160 (441)
T ss_dssp THHHHHHHHHHTT-EEEEEEES-EEETTTTB-HHHHH--HHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHH
T ss_pred chHHHHHhHhhCCcEEEEEeec-ccCCCCCcchhhhh--HhhcCceeecccCCcccccccCCcccccCCCChhHHHHHHH
Confidence 7889999999999999998876 3333321 00000 01123333333331 11243 34699999999999999
Q ss_pred HHHHHHHHhCCCeEEEcCcccc
Q psy9001 1107 NLRWYLEEYQFDGFRFDGVTSM 1128 (1351)
Q Consensus 1107 ~l~yWl~eygVDGFRfD~a~~m 1128 (1351)
.++..++.+|||||-+|.....
T Consensus 161 ~~~~~~~~~Gvdg~w~D~~E~~ 182 (441)
T PF01055_consen 161 QLKELLDDYGVDGWWLDFGEPS 182 (441)
T ss_dssp HHHHHHTTST-SEEEEESTTTB
T ss_pred HHHHHHhccCCceEEeecCCcc
Confidence 9999999999999999996533
No 155
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=90.32 E-value=0.33 Score=57.40 Aligned_cols=86 Identities=13% Similarity=0.173 Sum_probs=55.8
Q ss_pred HHHHHHHHHHcCCEEEEEeeccccccCCcCCcccC-CCCCCcC-cccCCCCC---CCCCC--CccCCCCCHHHHHHHHHH
Q psy9001 322 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-DGTQACF-FHDGPRGT---HPLWD--SRLFNYSEIEVLRFLLSN 394 (1351)
Q Consensus 322 fk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f-~g~~~~y-y~~~~~~~---~~~w~--~~~ln~~~p~v~~~l~~~ 394 (1351)
.++||+++|++|++|++=+.+- ...++.. | .+....| +.....+. ...|. +.-+|+.||+++++..+.
T Consensus 72 p~~mi~~L~~~G~k~~~~v~P~-v~~~~~~----y~e~~~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~ 146 (317)
T cd06598 72 PAGMIADLAKKGVKTIVITEPF-VLKNSKN----WGEAVKAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDN 146 (317)
T ss_pred HHHHHHHHHHcCCcEEEEEcCc-ccCCchh----HHHHHhCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHH
Confidence 4789999999999999876532 2222111 1 1111223 33222221 12232 457899999999999999
Q ss_pred HHHHHHHcCCCcccccccc
Q psy9001 395 LRWYLDEYQFDGFRFDGVT 413 (1351)
Q Consensus 395 l~~W~~e~~vDGfR~D~a~ 413 (1351)
++.. .+.|||||-+|...
T Consensus 147 ~~~~-~~~Gvdg~w~D~~E 164 (317)
T cd06598 147 YKKL-IDQGVTGWWGDLGE 164 (317)
T ss_pred HHHh-hhCCccEEEecCCC
Confidence 9887 44899999999754
No 156
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=90.21 E-value=0.13 Score=63.25 Aligned_cols=93 Identities=23% Similarity=0.439 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCC-CCCCcCcccCCCCC---CCCCC--CccCCCCCHHHHHHHHHH
Q psy9001 321 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFD-GTQACFFHDGPRGT---HPLWD--SRLFNYSEIEVLRFLLSN 394 (1351)
Q Consensus 321 efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~-g~~~~yy~~~~~~~---~~~w~--~~~ln~~~p~v~~~l~~~ 394 (1351)
++++||+.+|++|++|++-+.+ +...... ....|+ +....|+..++.+. ...|. +..+|+.||++++++.+.
T Consensus 84 d~~~~~~~l~~~G~~~~~~~~P-~v~~~~~-~~~~~~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~ 161 (441)
T PF01055_consen 84 DPKQMIDELHDQGIKVVLWVHP-FVSNDSP-DYENYDEAKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQ 161 (441)
T ss_dssp THHHHHHHHHHTT-EEEEEEES-EEETTTT-B-HHHHHHHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHH
T ss_pred chHHHHHhHhhCCcEEEEEeec-ccCCCCC-cchhhhhHhhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHH
Confidence 6789999999999999998887 3333321 000110 01122343333331 11254 357899999999999999
Q ss_pred HHHHHHHcCCCcccccccccc
Q psy9001 395 LRWYLDEYQFDGFRFDGVTSM 415 (1351)
Q Consensus 395 l~~W~~e~~vDGfR~D~a~~~ 415 (1351)
++..++.+|||||-+|.....
T Consensus 162 ~~~~~~~~Gvdg~w~D~~E~~ 182 (441)
T PF01055_consen 162 LKELLDDYGVDGWWLDFGEPS 182 (441)
T ss_dssp HHHHHTTST-SEEEEESTTTB
T ss_pred HHHHHhccCCceEEeecCCcc
Confidence 999999889999999985543
No 157
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=90.02 E-value=0.95 Score=59.43 Aligned_cols=95 Identities=18% Similarity=0.291 Sum_probs=62.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCC---CCCC--CccCCCCCHHHH
Q psy9001 314 GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTH---PLWD--SRLFNYSEIEVL 388 (1351)
Q Consensus 314 ~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~---~~w~--~~~ln~~~p~v~ 388 (1351)
.+|-.+ |+||+.+|++||++|+=+.+.=..+. + ..-.+....||..++.|.. ..|. +.-+||.||++|
T Consensus 318 ~~FP~p---k~mi~~l~~~Gikl~~~i~P~i~~d~-~---~~~e~~~~Gy~~k~~~g~~~~~~~w~~~~a~~DFtnp~~r 390 (772)
T COG1501 318 DRFPDP---KQMIAELHEKGIKLIVIINPYIKQDS-P---LFKEAIEKGYFVKDPDGEIYQADFWPGNSAFPDFTNPDAR 390 (772)
T ss_pred ccCCCH---HHHHHHHHhcCceEEEEeccccccCC-c---hHHHHHHCCeEEECCCCCEeeecccCCcccccCCCCHHHH
Confidence 445444 49999999999999976665433322 1 1111222346665555443 3454 467899999999
Q ss_pred HHHHHHHHHHHHHcCCCcccccccccc
Q psy9001 389 RFLLSNLRWYLDEYQFDGFRFDGVTSM 415 (1351)
Q Consensus 389 ~~l~~~l~~W~~e~~vDGfR~D~a~~~ 415 (1351)
++..+..+.-+.++|||||-.|...-.
T Consensus 391 ~Ww~~~~~~~l~d~Gv~g~W~D~nEp~ 417 (772)
T COG1501 391 EWWASDKKKNLLDLGVDGFWNDMNEPE 417 (772)
T ss_pred HHHHHHHHhHHHhcCccEEEccCCCCc
Confidence 999965544344499999999987655
No 158
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=90.02 E-value=1 Score=43.25 Aligned_cols=54 Identities=19% Similarity=0.421 Sum_probs=37.6
Q ss_pred EEEEEEEe---ecCCCCcc-ccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCcee
Q psy9001 74 MHVVCAAG---DFNNWNRE-EFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLL 133 (1351)
Q Consensus 74 A~~V~LvG---DFN~Wd~~-~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~~ 133 (1351)
-++|.|+| +|++|+.. ..+|...+.+.|++.+.- +.+. .-.|||.+...+|...
T Consensus 14 ge~l~v~G~~~~lG~W~~~~a~~l~~~~~~~W~~~v~l-~~~~-----~~eYKy~~~~~~~~~~ 71 (95)
T cd05808 14 GQNVYVVGNVPELGNWSPANAVALSAATYPVWSGTVDL-PAGT-----AIEYKYIKKDGSGTVT 71 (95)
T ss_pred CCEEEEEeCcHHhCCCChhhCccCCCCCCCCEEEEEEe-CCCC-----eEEEEEEEECCCCcEE
Confidence 46889999 58899964 579988778999887742 2221 2589998765555433
No 159
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=89.92 E-value=1.5 Score=52.86 Aligned_cols=89 Identities=15% Similarity=0.078 Sum_probs=61.7
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q psy9001 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNL 1108 (1351)
Q Consensus 1029 yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l 1108 (1351)
||..+ ++||..||++|++|++..-++ .-...+++.|+-+++++
T Consensus 62 ~~~~~--~~~~~~A~~~~v~v~~~~~~~-----------------------------------~~~l~~~~~R~~fi~si 104 (358)
T cd02875 62 FGDID--DELLCYAHSKGVRLVLKGDVP-----------------------------------LEQISNPTYRTQWIQQK 104 (358)
T ss_pred cCCCC--HHHHHHHHHcCCEEEEECccC-----------------------------------HHHcCCHHHHHHHHHHH
Confidence 35544 589999999999999751000 00245789999899999
Q ss_pred HHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChh-HHHHHHHHHHHHHhhCCC
Q psy9001 1109 RWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTD-ALIYLMVANKFLHDKYPE 1172 (1351)
Q Consensus 1109 ~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~-~~~fl~~~~~~l~~~~Pd 1172 (1351)
.-++++||+||+-+|-=.-... ...+.+ -..|++++++++++..+.
T Consensus 105 v~~~~~~gfDGIdIDwE~p~~~------------------~~~d~~~~t~llkelr~~l~~~~~~ 151 (358)
T cd02875 105 VELAKSQFMDGINIDIEQPITK------------------GSPEYYALTELVKETTKAFKKENPG 151 (358)
T ss_pred HHHHHHhCCCeEEEcccCCCCC------------------CcchHHHHHHHHHHHHHHHhhcCCC
Confidence 8899999999999996531100 011223 357899999999876554
No 160
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=89.63 E-value=1.1 Score=51.22 Aligned_cols=66 Identities=17% Similarity=0.203 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy9001 1031 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRW 1110 (1351)
Q Consensus 1031 t~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~y 1110 (1351)
+.+++++.|+.+|++|+||++=+-.+|.+... ....+++-|+.+.+++.-
T Consensus 49 ~~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~------------------------------~~~~~~~~~~~fa~~l~~ 98 (255)
T cd06542 49 LLTNKETYIRPLQAKGTKVLLSILGNHLGAGF------------------------------ANNLSDAAAKAYAKAIVD 98 (255)
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECCCCCCCCc------------------------------cccCCHHHHHHHHHHHHH
Confidence 47899999999999999999987554433210 012245667777778888
Q ss_pred HHHHhCCCeEEEcCcc
Q psy9001 1111 YLEEYQFDGFRFDGVT 1126 (1351)
Q Consensus 1111 Wl~eygVDGFRfD~a~ 1126 (1351)
++++||+||+=+|--.
T Consensus 99 ~v~~yglDGiDiD~E~ 114 (255)
T cd06542 99 TVDKYGLDGVDFDDEY 114 (255)
T ss_pred HHHHhCCCceEEeeee
Confidence 8899999999999643
No 161
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=89.49 E-value=2.3 Score=50.19 Aligned_cols=118 Identities=23% Similarity=0.257 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCC----CCCCCCCCHHHHHHHHHH
Q psy9001 1032 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWD----SRLFNYSEIEVLRFLLSN 1107 (1351)
Q Consensus 1032 ~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~----~~dlN~~np~Vr~~lid~ 1107 (1351)
+.|+++|+++||++||.+|-=+|. .++..- .. .++.|-.....| ..|. ..=+|-.+++|++|+++.
T Consensus 60 i~D~~~l~~~l~e~gIY~IARIv~---FkD~~l--a~---~~pe~av~~~~G--~~w~d~~~~~WvnP~~~evw~Y~i~I 129 (316)
T PF13200_consen 60 IKDLKALVKKLKEHGIYPIARIVV---FKDPVL--AE---AHPEWAVKTKDG--SVWRDNEGEAWVNPYSKEVWDYNIDI 129 (316)
T ss_pred ccCHHHHHHHHHHCCCEEEEEEEE---ecChHH--hh---hChhhEEECCCC--CcccCCCCCccCCCCCHHHHHHHHHH
Confidence 578999999999999999999874 222210 00 111221112222 1221 113788899999999999
Q ss_pred HHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcC----ChhH-HHHHHHHHHHHHhh
Q psy9001 1108 LRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNV----DTDA-LIYLMVANKFLHDK 1169 (1351)
Q Consensus 1108 l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~----d~~~-~~fl~~~~~~l~~~ 1169 (1351)
++-.++ .|||..-||-+..-- .+.... -.|+... -.++ ..|++.+++.|++.
T Consensus 130 A~Eaa~-~GFdEIqfDYIRFP~---~~~~~~------l~y~~~~~~~~r~~aI~~Fl~~a~~~l~~~ 186 (316)
T PF13200_consen 130 AKEAAK-LGFDEIQFDYIRFPD---EGRLSG------LDYSENDTEESRVDAITDFLAYAREELHPY 186 (316)
T ss_pred HHHHHH-cCCCEEEeeeeecCC---CCcccc------cccCCCCCcchHHHHHHHHHHHHHHHHhHc
Confidence 999876 699999999886331 000000 0111111 1233 45888899888765
No 162
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=88.92 E-value=2.4 Score=50.05 Aligned_cols=85 Identities=16% Similarity=0.337 Sum_probs=59.4
Q ss_pred CCCCCC-CCccCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHH
Q psy9001 370 GTHPLW-DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMV 448 (1351)
Q Consensus 370 ~~~~~w-~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~ 448 (1351)
+..++| +...+|+.+|+.+++|++-+.-.++ .|+|||=+|.+..-.+... .+.++. ....+-+.|++.
T Consensus 127 ~~n~~W~g~~~vd~~~~~W~~il~~rl~~l~~-kGfDGvfLD~lDsy~~~~~-~~~~~~---------~~~~~m~~~i~~ 195 (315)
T TIGR01370 127 NEDPDWPGNYDVKYWDPEWKAIAFSYLDRVIA-QGFDGVYLDLIDAFEYWAE-NGDNRP---------GAAAEMIAFVCE 195 (315)
T ss_pred CCCCCCCCceeEecccHHHHHHHHHHHHHHHH-cCCCeEeeccchhhhhhcc-cCCcch---------hhHHHHHHHHHH
Confidence 456789 6678999999999999988776655 6999999998775421110 000000 001233578888
Q ss_pred HHHHHHhhCCCeEEEEE
Q psy9001 449 ANKFLHDKYPEIITIAE 465 (1351)
Q Consensus 449 ~~~~v~~~~P~~~~iaE 465 (1351)
+.+.+|+.+|++++|.-
T Consensus 196 Ia~~ar~~~P~~~II~N 212 (315)
T TIGR01370 196 IAAYARAQNPQFVIIPQ 212 (315)
T ss_pred HHHHHHHHCCCEEEEec
Confidence 88888999999999844
No 163
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=88.90 E-value=1.6 Score=52.65 Aligned_cols=90 Identities=14% Similarity=0.075 Sum_probs=61.5
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHH
Q psy9001 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNL 395 (1351)
Q Consensus 316 ~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l 395 (1351)
||..+ ++||..||++|++|++..-+. .-...+++.|+-+++++
T Consensus 62 ~~~~~--~~~~~~A~~~~v~v~~~~~~~-----------------------------------~~~l~~~~~R~~fi~si 104 (358)
T cd02875 62 FGDID--DELLCYAHSKGVRLVLKGDVP-----------------------------------LEQISNPTYRTQWIQQK 104 (358)
T ss_pred cCCCC--HHHHHHHHHcCCEEEEECccC-----------------------------------HHHcCCHHHHHHHHHHH
Confidence 45544 589999999999999641000 00245789999999999
Q ss_pred HHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCch-HHHHHHHHHHHHHhhCCCe
Q psy9001 396 RWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTD-ALIYLMVANKFLHDKYPEI 460 (1351)
Q Consensus 396 ~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~-~~~f~~~~~~~v~~~~P~~ 460 (1351)
.-+++++|.||+-+|--.-.. .+..+.+ -..|++++++++++..++.
T Consensus 105 v~~~~~~gfDGIdIDwE~p~~------------------~~~~d~~~~t~llkelr~~l~~~~~~~ 152 (358)
T cd02875 105 VELAKSQFMDGINIDIEQPIT------------------KGSPEYYALTELVKETTKAFKKENPGY 152 (358)
T ss_pred HHHHHHhCCCeEEEcccCCCC------------------CCcchHHHHHHHHHHHHHHHhhcCCCc
Confidence 999999999999998532110 0011222 2479999999998776543
No 164
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=88.07 E-value=0.61 Score=55.66 Aligned_cols=91 Identities=10% Similarity=-0.019 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCC---CCCCC--CCCCCCCCHHHHHHHHHHH
Q psy9001 1034 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGT---HPLWD--SRLFNYSEIEVLRFLLSNL 1108 (1351)
Q Consensus 1034 dfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~---~~~w~--~~dlN~~np~Vr~~lid~l 1108 (1351)
+.+.||+++|++|++|++-+.+- +..+..... .-.+....||..+..+. ...|. +.-+|+.||++++...+-+
T Consensus 65 dp~~mi~~L~~~G~k~~~~~~P~-v~~~~~~~~-y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~ 142 (339)
T cd06603 65 DPEKMQEKLASKGRKLVTIVDPH-IKRDDGYYV-YKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLF 142 (339)
T ss_pred CHHHHHHHHHHCCCEEEEEecCc-eecCCCCHH-HHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHH
Confidence 45889999999999999987543 222210000 00112223444333331 12342 3369999999999999999
Q ss_pred HHHHH--HhCCCeEEEcCcc
Q psy9001 1109 RWYLE--EYQFDGFRFDGVT 1126 (1351)
Q Consensus 1109 ~yWl~--eygVDGFRfD~a~ 1126 (1351)
+..+. ..++|||=+|+..
T Consensus 143 ~~~~~~~~~g~~g~w~D~~E 162 (339)
T cd06603 143 SYDKYKGSTENLYIWNDMNE 162 (339)
T ss_pred HHHhhcccCCCceEEeccCC
Confidence 98876 3689999999753
No 165
>smart00632 Aamy_C Aamy_C domain.
Probab=87.61 E-value=2.1 Score=40.28 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=17.0
Q ss_pred CCcEEEEEeC-ceEEEEeCCCC
Q psy9001 529 GDKVIIFERA-GLLFAFNFNGT 549 (1351)
Q Consensus 529 ~~~Vlaf~R~-~ll~v~Nf~~~ 549 (1351)
++.+|+|.|. ..+|++|.+..
T Consensus 7 ~~~~laF~Rg~~g~VaiN~~~~ 28 (81)
T smart00632 7 GDNQIAFERGSKGFVAINRSDS 28 (81)
T ss_pred CCeEEEEECCCeEEEEEECCCC
Confidence 4459999997 78888998765
No 166
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=87.57 E-value=0.54 Score=56.14 Aligned_cols=89 Identities=9% Similarity=0.020 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccC-CCCCCcCcccCCCCC---CCCCCC--ccCCCCCHHHHHHHHHH
Q psy9001 321 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-DGTQACFFHDGPRGT---HPLWDS--RLFNYSEIEVLRFLLSN 394 (1351)
Q Consensus 321 efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f-~g~~~~yy~~~~~~~---~~~w~~--~~ln~~~p~v~~~l~~~ 394 (1351)
+.++||+++|++|++|++-+.+--..... ...| .+....||..+..+. ...|.+ ..+|+.||+++++..+-
T Consensus 65 dp~~mi~~L~~~G~k~~~~~~P~v~~~~~---~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~ 141 (339)
T cd06603 65 DPEKMQEKLASKGRKLVTIVDPHIKRDDG---YYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASL 141 (339)
T ss_pred CHHHHHHHHHHCCCEEEEEecCceecCCC---CHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHH
Confidence 45889999999999999987644322110 0011 112233444333321 123433 46899999999999999
Q ss_pred HHHHHH--HcCCCccccccc
Q psy9001 395 LRWYLD--EYQFDGFRFDGV 412 (1351)
Q Consensus 395 l~~W~~--e~~vDGfR~D~a 412 (1351)
++..+. ..+||||-+|+.
T Consensus 142 ~~~~~~~~~~g~~g~w~D~~ 161 (339)
T cd06603 142 FSYDKYKGSTENLYIWNDMN 161 (339)
T ss_pred HHHHhhcccCCCceEEeccC
Confidence 998876 368999999864
No 167
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=87.27 E-value=7 Score=44.44 Aligned_cols=107 Identities=18% Similarity=0.158 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHH
Q psy9001 1032 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWD-SRLFNYSEIEVLRFLLSNLRW 1110 (1351)
Q Consensus 1032 ~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~-~~dlN~~np~Vr~~lid~l~y 1110 (1351)
.+.|+++|+.|+++||+||||+--. +.|. ..+.........+++.+.+++
T Consensus 61 ~~~ld~~v~~a~~~gi~vild~h~~-----------------------------~~w~~~~~~~~~~~~~~~~~~~~~~~ 111 (281)
T PF00150_consen 61 LARLDRIVDAAQAYGIYVILDLHNA-----------------------------PGWANGGDGYGNNDTAQAWFKSFWRA 111 (281)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEEES-----------------------------TTCSSSTSTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEEEEeccC-----------------------------ccccccccccccchhhHHHHHhhhhh
Confidence 7899999999999999999997332 1111 112333444567777788888
Q ss_pred HHHHh----CCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEcc
Q psy9001 1111 YLEEY----QFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAED 1179 (1351)
Q Consensus 1111 Wl~ey----gVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~ 1179 (1351)
+++.| .|-|| +.+......... ..| .......-..+.+.+.+.||+..|+.+++.+.
T Consensus 112 la~~y~~~~~v~~~--el~NEP~~~~~~---~~w-------~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~ 172 (281)
T PF00150_consen 112 LAKRYKDNPPVVGW--ELWNEPNGGNDD---ANW-------NAQNPADWQDWYQRAIDAIRAADPNHLIIVGG 172 (281)
T ss_dssp HHHHHTTTTTTEEE--ESSSSGCSTTST---TTT-------SHHHTHHHHHHHHHHHHHHHHTTSSSEEEEEE
T ss_pred hccccCCCCcEEEE--EecCCccccCCc---ccc-------ccccchhhhhHHHHHHHHHHhcCCcceeecCC
Confidence 88888 33333 333322100000 000 00011223567899999999999998887774
No 168
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=86.67 E-value=1.5 Score=52.35 Aligned_cols=68 Identities=16% Similarity=0.107 Sum_probs=49.4
Q ss_pred HHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHH
Q psy9001 322 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDE 401 (1351)
Q Consensus 322 fk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~~W~~e 401 (1351)
.++||+++|++|++||+-+.+-= .. |. ...+.+.-.|+.||++|++..+..+.+.+
T Consensus 66 p~~mv~~L~~~G~klv~~i~P~i-~~----------g~------------~~~~~~~~pDftnp~ar~wW~~~~~~l~~- 121 (332)
T cd06601 66 PKEMFDNLHNKGLKCSTNITPVI-SY----------GG------------GLGSPGLYPDLGRPDVREWWGNQYKYLFD- 121 (332)
T ss_pred HHHHHHHHHHCCCeEEEEecCce-ec----------Cc------------cCCCCceeeCCCCHHHHHHHHHHHHHHHh-
Confidence 47899999999999988765321 10 10 00112345789999999999888888776
Q ss_pred cCCCcccccccc
Q psy9001 402 YQFDGFRFDGVT 413 (1351)
Q Consensus 402 ~~vDGfR~D~a~ 413 (1351)
.|||||-.|+..
T Consensus 122 ~Gv~~~W~DmnE 133 (332)
T cd06601 122 IGLEFVWQDMTT 133 (332)
T ss_pred CCCceeecCCCC
Confidence 799999999754
No 169
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=86.48 E-value=1.1 Score=59.71 Aligned_cols=89 Identities=13% Similarity=0.243 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccC-CCCCCcCcccCCCCCC---CCCCC--ccCCCCCHHHHHHHHHH
Q psy9001 321 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-DGTQACFFHDGPRGTH---PLWDS--RLFNYSEIEVLRFLLSN 394 (1351)
Q Consensus 321 efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f-~g~~~~yy~~~~~~~~---~~w~~--~~ln~~~p~v~~~l~~~ 394 (1351)
+.++||+++|++|+++|+=+.+ +...+ .+...+ .|....+|.....+.. ..|.+ .-.||.||++|++..+.
T Consensus 242 dP~~mv~~Lh~~G~kvv~iidP-gI~~d--~gY~~y~eg~~~~~fvk~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~~~ 318 (978)
T PLN02763 242 DPKGLADDLHSIGFKAIWMLDP-GIKAE--EGYFVYDSGCENDVWIQTADGKPFVGEVWPGPCVFPDFTNKKTRSWWANL 318 (978)
T ss_pred CHHHHHHHHHHCCCEEEEEEcC-CCccC--CCCHHHHhHhhcCeeEECCCCCeeEeeecCCCccccCCCCHHHHHHHHHH
Confidence 4589999999999999764433 22221 111112 2222344444333321 24543 34699999999999999
Q ss_pred HHHHHHHcCCCcccccccc
Q psy9001 395 LRWYLDEYQFDGFRFDGVT 413 (1351)
Q Consensus 395 l~~W~~e~~vDGfR~D~a~ 413 (1351)
++.+++ .|||||-+|+-.
T Consensus 319 ~k~l~d-~GVDG~W~DmnE 336 (978)
T PLN02763 319 VKDFVS-NGVDGIWNDMNE 336 (978)
T ss_pred HHHHhc-CCCcEEEccCCC
Confidence 998887 899999999754
No 170
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=86.32 E-value=6 Score=47.19 Aligned_cols=167 Identities=19% Similarity=0.149 Sum_probs=83.9
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHH
Q psy9001 317 GTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLR 396 (1351)
Q Consensus 317 G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~ 396 (1351)
-+.+...+|.++++++||+|+||+=|..+-.+. | .......|.+..++-=...|.+|-.++|.
T Consensus 55 ~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDP--------g---------~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~ 117 (332)
T PF07745_consen 55 NDLEDVIALAKRAKAAGMKVLLDFHYSDFWADP--------G---------KQNKPAAWANLSFDQLAKAVYDYTKDVLQ 117 (332)
T ss_dssp TSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BT--------T---------B-B--TTCTSSSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCeEEEeecccCCCCCC--------C---------CCCCCccCCCCCHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999999888765541 0 01112346544333334567777777777
Q ss_pred HHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchH-HHHHHHHHHHHHhhCCCeEEEEEcCCCCCC---
Q psy9001 397 WYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDA-LIYLMVANKFLHDKYPEIITIAEDVSGMPA--- 472 (1351)
Q Consensus 397 ~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~-~~f~~~~~~~v~~~~P~~~~iaE~~~~~p~--- 472 (1351)
.... .|| -.|.+..= .....++.+.. +...+.+. ..+++...++||+..|++.++-=...+...
T Consensus 118 ~l~~-~G~---~pd~VQVG----NEin~Gmlwp~----g~~~~~~~~a~ll~ag~~AVr~~~p~~kV~lH~~~~~~~~~~ 185 (332)
T PF07745_consen 118 ALKA-AGV---TPDMVQVG----NEINNGMLWPD----GKPSNWDNLAKLLNAGIKAVREVDPNIKVMLHLANGGDNDLY 185 (332)
T ss_dssp HHHH-TT-----ESEEEES----SSGGGESTBTT----TCTT-HHHHHHHHHHHHHHHHTHSSTSEEEEEES-TTSHHHH
T ss_pred HHHH-CCC---CccEEEeC----ccccccccCcC----CCccCHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCCchHHH
Confidence 7655 454 45554321 00011111110 11122222 357777789999999987654332221111
Q ss_pred --cccccccCCCCCCCcCC-cCCCCCCCcHHHHHHHHHHhhhcc
Q psy9001 473 --SCRPVTEGGTGFDYRLE-IRPDMSDMTVGTFDAAMNTTEERF 513 (1351)
Q Consensus 473 --~~~~~~~gg~gfd~~~~-~~~d~~~~sl~~f~k~L~~Lr~~~ 513 (1351)
.+......|..||+-=- +.+. ...++..+...|..|++++
T Consensus 186 ~~~f~~l~~~g~d~DviGlSyYP~-w~~~l~~l~~~l~~l~~ry 228 (332)
T PF07745_consen 186 RWFFDNLKAAGVDFDVIGLSYYPF-WHGTLEDLKNNLNDLASRY 228 (332)
T ss_dssp HHHHHHHHHTTGG-SEEEEEE-ST-TST-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcceEEEecCCC-CcchHHHHHHHHHHHHHHh
Confidence 11111112344442111 1111 2337888888888887766
No 171
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=85.62 E-value=2.2 Score=48.63 Aligned_cols=64 Identities=20% Similarity=0.275 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHHH
Q psy9001 318 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRW 397 (1351)
Q Consensus 318 ~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~~ 397 (1351)
+.+++++.|+.+|++|+||++=+-.+|.+.. | .....++-++.+.+++.-
T Consensus 49 ~~~~~~~~i~~l~~kG~KVl~sigg~~~~~~-------~-----------------------~~~~~~~~~~~fa~~l~~ 98 (255)
T cd06542 49 LLTNKETYIRPLQAKGTKVLLSILGNHLGAG-------F-----------------------ANNLSDAAAKAYAKAIVD 98 (255)
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECCCCCCCC-------c-----------------------cccCCHHHHHHHHHHHHH
Confidence 4688999999999999999987755553321 0 012245667777888888
Q ss_pred HHHHcCCCcccccc
Q psy9001 398 YLDEYQFDGFRFDG 411 (1351)
Q Consensus 398 W~~e~~vDGfR~D~ 411 (1351)
++++||+||+-+|-
T Consensus 99 ~v~~yglDGiDiD~ 112 (255)
T cd06542 99 TVDKYGLDGVDFDD 112 (255)
T ss_pred HHHHhCCCceEEee
Confidence 88999999999985
No 172
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=85.61 E-value=1.4 Score=42.57 Aligned_cols=58 Identities=17% Similarity=0.383 Sum_probs=42.0
Q ss_pred eeEEE-------EEEEEEEeecC---CCCc-cccceeec----CCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCce
Q psy9001 69 GLLCF-------MHVVCAAGDFN---NWNR-EEFAYKKL----DFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHL 132 (1351)
Q Consensus 69 gv~F~-------A~~V~LvGDFN---~Wd~-~~~~M~k~----~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~ 132 (1351)
.|+|+ -++|.|+|+.. +|+. +..+|... ...+|++.|. +..+. --.|||.+.+.+|..
T Consensus 3 ~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~-lp~~~-----~~eYKy~i~~~~g~~ 75 (96)
T PF00686_consen 3 SVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVD-LPAGT-----PFEYKYVIKDADGNV 75 (96)
T ss_dssp EEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEE-EETTS-----EEEEEEEEEETTSEE
T ss_pred EEEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEE-CcCCC-----EEEEEEEEEeCCCCE
Confidence 46676 58999999876 7997 56899874 4589999983 22231 247999998777643
No 173
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=84.84 E-value=1.3 Score=58.31 Aligned_cols=89 Identities=18% Similarity=0.280 Sum_probs=58.8
Q ss_pred HHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCC---CC--CCCCCCCCHHHHHHHHHHHHH
Q psy9001 1036 KYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPL---WD--SRLFNYSEIEVLRFLLSNLRW 1110 (1351)
Q Consensus 1036 K~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~---w~--~~dlN~~np~Vr~~lid~l~y 1110 (1351)
|.||+.+|++||++|.=+.+.=..+.. + .-......||..+++|.... |. +.-+||.||++|+...+..+.
T Consensus 324 k~mi~~l~~~Gikl~~~i~P~i~~d~~---~-~~e~~~~Gy~~k~~~g~~~~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~ 399 (772)
T COG1501 324 KQMIAELHEKGIKLIVIINPYIKQDSP---L-FKEAIEKGYFVKDPDGEIYQADFWPGNSAFPDFTNPDAREWWASDKKK 399 (772)
T ss_pred HHHHHHHHhcCceEEEEeccccccCCc---h-HHHHHHCCeEEECCCCCEeeecccCCcccccCCCCHHHHHHHHHHHHh
Confidence 399999999999999877554222211 0 00112234665555554333 32 346899999999999965544
Q ss_pred HHHHhCCCeEEEcCcccc
Q psy9001 1111 YLEEYQFDGFRFDGVTSM 1128 (1351)
Q Consensus 1111 Wl~eygVDGFRfD~a~~m 1128 (1351)
-+.++|||||=.|...-.
T Consensus 400 ~l~d~Gv~g~W~D~nEp~ 417 (772)
T COG1501 400 NLLDLGVDGFWNDMNEPE 417 (772)
T ss_pred HHHhcCccEEEccCCCCc
Confidence 445579999999988655
No 174
>PLN02635 disproportionating enzyme
Probab=84.74 E-value=4.7 Score=51.01 Aligned_cols=136 Identities=18% Similarity=0.228 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeec--ccccCCcc--ccCcC---------CCCCCCccccCCCCCCCCCCCCCCCCCCCH
Q psy9001 1032 PEQLKYLVDECHKAGLYVLLDVVH--SHASKNVL--DGLNE---------FDGTQACFFHDGPRGTHPLWDSRLFNYSEI 1098 (1351)
Q Consensus 1032 ~edfK~LV~~aH~~GI~VILDVV~--NHts~~~~--~~l~~---------~dg~~~~yf~~~~~g~~~~w~~~dlN~~np 1098 (1351)
-++++++-+.||++||++|.|+.+ +|-|.+.- ..+-. --|.++++|... -.+|+..-+|...-
T Consensus 223 ~~Qw~~l~~yA~~~Gi~L~gDlpi~Va~dSaDvWa~~~lF~ld~~g~p~~~aGaPPD~Fs~~----GQ~WG~P~y~w~~l 298 (538)
T PLN02635 223 QRQWQAVRSYANEKGISIIGDMPIYVGGHSADVWANRKLFLLNKTGFPLLVSGVPPDAFSET----GQLWGSPLYDWKAM 298 (538)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeecccCCCcHHHhcCHHhhcCCCCCCcceeeeCCCCcCCcc----cccCCCcCcCHHHH
Confidence 478999999999999999999984 55554430 00111 125566777532 23566554544321
Q ss_pred H--HHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEE
Q psy9001 1099 E--VLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITI 1176 (1351)
Q Consensus 1099 ~--Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilI 1176 (1351)
+ --+..++-+++=++ .+|..|+|-+.-+.+. .-+..+ ......|....-+..+++. .|.+..+++.+|
T Consensus 299 ~~~gy~ww~~Rlr~~~~--~~d~lRIDHf~Gf~r~-W~IP~g---~~ta~~G~wv~~Pg~~l~~----~l~~~~~~~~vI 368 (538)
T PLN02635 299 AKDGYSWWAGRMRRALE--LYDEFRIDHFRGFAGY-WAVPAD---AKTAMNGRWKVGPGKSFFD----AIKKAVGKIDII 368 (538)
T ss_pred HhcCcHHHHHHHHHHHH--hCCeEEecchhhhhee-eeccCC---CCCCCCCeeeeCCHHHHHH----HHHHHcCCCCEE
Confidence 0 01123444444444 7899999987644221 000000 0011112223344555553 455666789999
Q ss_pred EccCC
Q psy9001 1177 AEDVS 1181 (1351)
Q Consensus 1177 aE~~~ 1181 (1351)
||+..
T Consensus 369 aEDLG 373 (538)
T PLN02635 369 AEDLG 373 (538)
T ss_pred EeeCC
Confidence 99864
No 175
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=84.35 E-value=1.7 Score=58.04 Aligned_cols=89 Identities=13% Similarity=0.241 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHcCCEEEEEeecccccCCccccCcCC-CCCCCccccCCCCCC---CCCCCC--CCCCCCCHHHHHHHHHH
Q psy9001 1034 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-DGTQACFFHDGPRGT---HPLWDS--RLFNYSEIEVLRFLLSN 1107 (1351)
Q Consensus 1034 dfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~-dg~~~~yf~~~~~g~---~~~w~~--~dlN~~np~Vr~~lid~ 1107 (1351)
+.++||+.+|++|++||+=+.+ +...+ .+...+ .+....+|....+|. -..|.+ .-.||.||++|++..+.
T Consensus 242 dP~~mv~~Lh~~G~kvv~iidP-gI~~d--~gY~~y~eg~~~~~fvk~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~~~ 318 (978)
T PLN02763 242 DPKGLADDLHSIGFKAIWMLDP-GIKAE--EGYFVYDSGCENDVWIQTADGKPFVGEVWPGPCVFPDFTNKKTRSWWANL 318 (978)
T ss_pred CHHHHHHHHHHCCCEEEEEEcC-CCccC--CCCHHHHhHhhcCeeEECCCCCeeEeeecCCCccccCCCCHHHHHHHHHH
Confidence 3579999999999999774422 22221 111111 112223443333332 123432 24799999999999999
Q ss_pred HHHHHHHhCCCeEEEcCcc
Q psy9001 1108 LRWYLEEYQFDGFRFDGVT 1126 (1351)
Q Consensus 1108 l~yWl~eygVDGFRfD~a~ 1126 (1351)
++.+++ .|||||=+|+-.
T Consensus 319 ~k~l~d-~GVDG~W~DmnE 336 (978)
T PLN02763 319 VKDFVS-NGVDGIWNDMNE 336 (978)
T ss_pred HHHHhc-CCCcEEEccCCC
Confidence 998877 699999999854
No 176
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=84.04 E-value=2.4 Score=50.63 Aligned_cols=72 Identities=17% Similarity=0.151 Sum_probs=50.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q psy9001 1028 LFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSN 1107 (1351)
Q Consensus 1028 ~yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~ 1107 (1351)
+|-.+ ++||+++|++|++|++-+.+- ... + ....+.+.-.|+.||++|++-.+.
T Consensus 62 ~FPdp---~~mv~~L~~~G~klv~~i~P~-i~~----------g------------~~~~~~~~~pDftnp~ar~wW~~~ 115 (332)
T cd06601 62 GFPNP---KEMFDNLHNKGLKCSTNITPV-ISY----------G------------GGLGSPGLYPDLGRPDVREWWGNQ 115 (332)
T ss_pred CCCCH---HHHHHHHHHCCCeEEEEecCc-eec----------C------------ccCCCCceeeCCCCHHHHHHHHHH
Confidence 45444 689999999999999886422 110 0 000111234789999999998888
Q ss_pred HHHHHHHhCCCeEEEcCcc
Q psy9001 1108 LRWYLEEYQFDGFRFDGVT 1126 (1351)
Q Consensus 1108 l~yWl~eygVDGFRfD~a~ 1126 (1351)
++.+.+ .|||||=.|+..
T Consensus 116 ~~~l~~-~Gv~~~W~DmnE 133 (332)
T cd06601 116 YKYLFD-IGLEFVWQDMTT 133 (332)
T ss_pred HHHHHh-CCCceeecCCCC
Confidence 888776 599999999764
No 177
>PF11852 DUF3372: Domain of unknown function (DUF3372); InterPro: IPR024561 This entry represents the uncharacterised C-terminal domain of secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyse alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. ; PDB: 2Y4S_A 2FH8_A 2FH6_A 2Y5E_A 2FHC_A 2FHB_A 2FHF_A 2FGZ_A.
Probab=83.75 E-value=3.9 Score=43.98 Aligned_cols=51 Identities=12% Similarity=0.180 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhhcccccccCCcc-----eEee----cCCCcEEEEEeC--------------ceEEEEeCCCC
Q psy9001 499 VGTFDAAMNTTEERFKWLSADPGY-----VSTK----HEGDKVIIFERA--------------GLLFAFNFNGT 549 (1351)
Q Consensus 499 l~~f~k~L~~Lr~~~~~L~~g~~~-----~~~~----~~~~~Vlaf~R~--------------~ll~v~Nf~~~ 549 (1351)
..+++++|++||+.+|.++-+..- +.+. +....||++.=. .||||||-+|+
T Consensus 43 a~~~f~elL~iR~SspLFrL~ta~~I~~rv~F~n~G~~q~pGvIvM~idDg~~~~~dlD~~~~~iVVvfNat~~ 116 (168)
T PF11852_consen 43 ASAYFQELLRIRKSSPLFRLGTAEEIQQRVTFHNTGPDQTPGVIVMSIDDGAGVGADLDPNYDGIVVVFNATPE 116 (168)
T ss_dssp HHHHHHHHHHHHCT-GGGG--SHHHHHHHEEEES-STT--TTEEEEEEE-SCSSSS-S-SSEEEEEEEEE-SSS
T ss_pred HHHHHHHHHHHhccCccccCCCHHHHHHhccccCCCCCCCCcEEEEEecCCCccccccCCccCeEEEEEeCCCC
Confidence 489999999999999998755211 1111 123556666532 49999999998
No 178
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=82.70 E-value=10 Score=49.15 Aligned_cols=44 Identities=18% Similarity=0.098 Sum_probs=36.5
Q ss_pred CCCCCCCccCCCCCHHHHHHHHHHHHHHHHHcCCCcccccccccc
Q psy9001 371 THPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM 415 (1351)
Q Consensus 371 ~~~~w~~~~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~ 415 (1351)
.+++|... |+-.+|+||++|.+...-.+..+.|||.-||-=..+
T Consensus 427 ~~~~~~~r-l~P~~pe~r~~i~~i~~dla~~~~~dGilf~Dd~~l 470 (671)
T PRK14582 427 IHPEQYRR-LSPFDDRVRAQVGMLYEDLAGHAAFDGILFHDDAVL 470 (671)
T ss_pred cCCCCCcC-CCCCCHHHHHHHHHHHHHHHHhCCCceEEecccccc
Confidence 45677544 999999999999999999999899999988754333
No 179
>PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO. Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=81.77 E-value=1.1 Score=42.03 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=17.6
Q ss_pred CCcEEEEEeC----ceEEEEeCCCC
Q psy9001 529 GDKVIIFERA----GLLFAFNFNGT 549 (1351)
Q Consensus 529 ~~~Vlaf~R~----~ll~v~Nf~~~ 549 (1351)
.+.|++|.|. .++||+|.+..
T Consensus 8 ~~gvYvYfR~~~~~tVmVilN~n~~ 32 (78)
T PF10438_consen 8 QDGVYVYFRYYDGKTVMVILNKNDK 32 (78)
T ss_dssp BTTEEEEEEEESSEEEEEEEE-SSS
T ss_pred cCCEEEEEEEcCCCEEEEEEcCCCC
Confidence 5679999996 89999999887
No 180
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=81.44 E-value=6.3 Score=49.58 Aligned_cols=139 Identities=19% Similarity=0.238 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecc--cccCCc---cccC--cCC------CCCCCccccCCCCCCCCCCCCCCCCCCCH
Q psy9001 1032 PEQLKYLVDECHKAGLYVLLDVVHS--HASKNV---LDGL--NEF------DGTQACFFHDGPRGTHPLWDSRLFNYSEI 1098 (1351)
Q Consensus 1032 ~edfK~LV~~aH~~GI~VILDVV~N--Hts~~~---~~~l--~~~------dg~~~~yf~~~~~g~~~~w~~~dlN~~np 1098 (1351)
-++++++.+.||++||++|.|+.+- +-|.+. .+-+ ..- -|.++++|... -.+|+...+|...-
T Consensus 197 ~~Q~~~~~~yA~~~Gi~L~gDLpigV~~dsaDvWa~~~lF~l~~~~~p~~vaGaPPD~Fs~~----GQ~WG~P~y~w~~l 272 (497)
T PRK14508 197 FRQWKALKAYANDKGIEIIGDLPIYVAYDSADVWANPELFKLDEDGKPTVVAGVPPDYFSET----GQLWGNPVYNWDAL 272 (497)
T ss_pred HHHHHHHHHHHHHCCCEEEEeeecccCCCCHHHHcChhhhcCCCCCCcceeeeCCCCCCCcc----cCcCCCCCcCHHHH
Confidence 4788999999999999999999874 323221 0101 111 35556666432 23566555544321
Q ss_pred HH--HHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEE
Q psy9001 1099 EV--LRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITI 1176 (1351)
Q Consensus 1099 ~V--r~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilI 1176 (1351)
+- -+..++-+++=++ .+|.+|+|-+.-+.+. .-+..+. .....|.....+..+++..+..++ +++.+|
T Consensus 273 ~~~gy~ww~~rlr~~~~--~~~~lRIDH~~Gf~r~-W~IP~~~---~~a~~G~~v~~p~~~l~~~l~~e~----~~~~vi 342 (497)
T PRK14508 273 RKDGYRWWIERLRRSFK--LYDIVRIDHFRGFEAY-WEIPAGE---KTAINGRWVPGPGKDLFEAVKEEL----GDLPII 342 (497)
T ss_pred HhcCcHHHHHHHHHHHH--hCCeEEecchhhhcee-eeecCCC---CCCCCCeeecCCHHHHHHHHHHHh----CCCCEE
Confidence 11 1124455555444 7899999987654321 0011100 001112222233445555444443 789999
Q ss_pred EccCCCCC
Q psy9001 1177 AEDVSGMP 1184 (1351)
Q Consensus 1177 aE~~~~~p 1184 (1351)
||+....|
T Consensus 343 gEDLG~vp 350 (497)
T PRK14508 343 AEDLGVIT 350 (497)
T ss_pred EeECCCCC
Confidence 99874443
No 181
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=80.97 E-value=4.8 Score=45.97 Aligned_cols=87 Identities=16% Similarity=0.265 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy9001 1032 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWY 1111 (1351)
Q Consensus 1032 ~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~yW 1111 (1351)
..++..++++||++|++|++=|- ++... . | .--..+++.|+.+++++.-+
T Consensus 45 ~~~~~~~~~~~~~~~~kvl~sig-g~~~~--------------~-~--------------~~~~~~~~~r~~fi~~lv~~ 94 (253)
T cd06545 45 RSELNSVVNAAHAHNVKILISLA-GGSPP--------------E-F--------------TAALNDPAKRKALVDKIINY 94 (253)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEc-CCCCC--------------c-c--------------hhhhcCHHHHHHHHHHHHHH
Confidence 46789999999999999998542 21110 0 0 01235788999999999999
Q ss_pred HHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhh
Q psy9001 1112 LEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDK 1169 (1351)
Q Consensus 1112 l~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~ 1169 (1351)
+++|++||.-+|--.... ....-..|++++++.+++.
T Consensus 95 ~~~~~~DGIdiDwE~~~~---------------------~~~~~~~fv~~Lr~~l~~~ 131 (253)
T cd06545 95 VVSYNLDGIDVDLEGPDV---------------------TFGDYLVFIRALYAALKKE 131 (253)
T ss_pred HHHhCCCceeEEeeccCc---------------------cHhHHHHHHHHHHHHHhhc
Confidence 999999999999753110 0122456888899888764
No 182
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=80.82 E-value=14 Score=42.75 Aligned_cols=165 Identities=16% Similarity=0.112 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHH
Q psy9001 320 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYL 399 (1351)
Q Consensus 320 ~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~~W~ 399 (1351)
+-.-++-++|.+.||+|++|+-|.-.-.+. ........|....++--...|.+|-..++....
T Consensus 104 ~k~ieiakRAk~~GmKVl~dFHYSDfwaDP-----------------akQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~ 166 (403)
T COG3867 104 KKAIEIAKRAKNLGMKVLLDFHYSDFWADP-----------------AKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMK 166 (403)
T ss_pred HHHHHHHHHHHhcCcEEEeeccchhhccCh-----------------hhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 334455667788999999999765432220 001122346533333335667777778888877
Q ss_pred HHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHH-HHHHHHHHHHHhhCCCeEEEEEc-CCCCCCccccc
Q psy9001 400 DEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDAL-IYLMVANKFLHDKYPEIITIAED-VSGMPASCRPV 477 (1351)
Q Consensus 400 ~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~-~f~~~~~~~v~~~~P~~~~iaE~-~~~~p~~~~~~ 477 (1351)
+| || -.|++..= .....+|.+...+ ..+.+.+ ..+.+...+||+..|++.++--- ....+..++-+
T Consensus 167 ~e-Gi---~pdmVQVG----NEtn~gflwp~Ge----~~~f~k~a~L~n~g~~avrev~p~ikv~lHla~g~~n~~y~~~ 234 (403)
T COG3867 167 KE-GI---LPDMVQVG----NETNGGFLWPDGE----GRNFDKMAALLNAGIRAVREVSPTIKVALHLAEGENNSLYRWI 234 (403)
T ss_pred Hc-CC---CccceEec----cccCCceeccCCC----CcChHHHHHHHHHHhhhhhhcCCCceEEEEecCCCCCchhhHH
Confidence 75 44 45554421 1112223211111 0122332 45566677888889986543221 13334444433
Q ss_pred ccC----CCCCCCcCCcCCCCCCCcHHHHHHHHHHhhhcc
Q psy9001 478 TEG----GTGFDYRLEIRPDMSDMTVGTFDAAMNTTEERF 513 (1351)
Q Consensus 478 ~~g----g~gfd~~~~~~~d~~~~sl~~f~k~L~~Lr~~~ 513 (1351)
..+ ...||---.-+-..++++|.+....|..+-.++
T Consensus 235 fd~ltk~nvdfDVig~SyYpyWhgtl~nL~~nl~dia~rY 274 (403)
T COG3867 235 FDELTKRNVDFDVIGSSYYPYWHGTLNNLTTNLNDIASRY 274 (403)
T ss_pred HHHHHHcCCCceEEeeeccccccCcHHHHHhHHHHHHHHh
Confidence 211 223321111111125668888888887775544
No 183
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=80.70 E-value=5.8 Score=46.87 Aligned_cols=64 Identities=19% Similarity=0.328 Sum_probs=49.5
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q psy9001 1030 GTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLR 1109 (1351)
Q Consensus 1030 Gt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~ 1109 (1351)
.+.+++++-|++||++|++|||=+ +.. .+ .....++.-|+.+.+++.
T Consensus 57 ~~~~~~~~~i~~~q~~G~KVllSi-----GG~--------~~--------------------~~~~~~~~~~~~fa~sl~ 103 (312)
T cd02871 57 YSPAEFKADIKALQAKGKKVLISI-----GGA--------NG--------------------HVDLNHTAQEDNFVDSIV 103 (312)
T ss_pred CChHHHHHHHHHHHHCCCEEEEEE-----eCC--------CC--------------------ccccCCHHHHHHHHHHHH
Confidence 356889999999999999999875 100 00 012345678889999999
Q ss_pred HHHHHhCCCeEEEcCcc
Q psy9001 1110 WYLEEYQFDGFRFDGVT 1126 (1351)
Q Consensus 1110 yWl~eygVDGFRfD~a~ 1126 (1351)
-++++|++||+-||--.
T Consensus 104 ~~~~~~g~DGiDiD~E~ 120 (312)
T cd02871 104 AIIKEYGFDGLDIDLES 120 (312)
T ss_pred HHHHHhCCCeEEEeccc
Confidence 99999999999999754
No 184
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=79.05 E-value=5.9 Score=37.17 Aligned_cols=20 Identities=15% Similarity=0.257 Sum_probs=16.3
Q ss_pred cEEEEeecCCccEEEEEec-ch
Q psy9001 706 SVRCFEWAPSAQQLYLTGY-NA 726 (1351)
Q Consensus 706 ~~~~~~WaP~A~~v~l~~~-~~ 726 (1351)
+++|+-.+ .|++|+|+|. |+
T Consensus 3 ~v~f~~~~-~a~~V~v~G~F~~ 23 (79)
T cd02859 3 PTTFVWPG-GGKEVYVTGSFDN 23 (79)
T ss_pred EEEEEEcC-CCcEEEEEEEcCC
Confidence 47888888 8999999993 54
No 185
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=78.92 E-value=2 Score=50.31 Aligned_cols=27 Identities=37% Similarity=0.428 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccc
Q psy9001 319 PEQLKYLVDECHKAGLYVLLDVVHSHA 345 (1351)
Q Consensus 319 ~~efk~LV~~~H~~GI~VILDvV~NH~ 345 (1351)
..-|++|++.||+.|++||+||-+.-.
T Consensus 48 ~~~~~ell~~Anklg~~vivDvnPsil 74 (360)
T COG3589 48 FHRFKELLKEANKLGLRVIVDVNPSIL 74 (360)
T ss_pred HHHHHHHHHHHHhcCcEEEEEcCHHHH
Confidence 356999999999999999999977643
No 186
>PLN02635 disproportionating enzyme
Probab=77.95 E-value=9.5 Score=48.32 Aligned_cols=133 Identities=17% Similarity=0.204 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHcCCEEEEEeec--cccccCCcCCc---ccC---------CCCCCcCcccCCCCCCCCCCCccCCCCC--
Q psy9001 321 QLKYLVDECHKAGLYVLLDVVH--SHASKNVLDGL---NEF---------DGTQACFFHDGPRGTHPLWDSRLFNYSE-- 384 (1351)
Q Consensus 321 efk~LV~~~H~~GI~VILDvV~--NH~~~~~~~~~---~~f---------~g~~~~yy~~~~~~~~~~w~~~~ln~~~-- 384 (1351)
+++++-+.||++||++|-|+-+ ++-|.+ -|.. ... .|..+.||... -.+|+.+.+|...
T Consensus 225 Qw~~l~~yA~~~Gi~L~gDlpi~Va~dSaD-vWa~~~lF~ld~~g~p~~~aGaPPD~Fs~~----GQ~WG~P~y~w~~l~ 299 (538)
T PLN02635 225 QWQAVRSYANEKGISIIGDMPIYVGGHSAD-VWANRKLFLLNKTGFPLLVSGVPPDAFSET----GQLWGSPLYDWKAMA 299 (538)
T ss_pred HHHHHHHHHHHCCCEEEEEeecccCCCcHH-HhcCHHhhcCCCCCCcceeeeCCCCcCCcc----cccCCCcCcCHHHHH
Confidence 5788889999999999999984 444443 2221 111 24445566432 1357766665532
Q ss_pred HHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEE
Q psy9001 385 IEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIA 464 (1351)
Q Consensus 385 p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~ia 464 (1351)
..--+..++-+++=++ .+|..|+|-+--+.+. ...+.+-. ...-|.-+.....+++. ++.+..++..+||
T Consensus 300 ~~gy~ww~~Rlr~~~~--~~d~lRIDHf~Gf~r~-W~IP~g~~---ta~~G~wv~~Pg~~l~~----~l~~~~~~~~vIa 369 (538)
T PLN02635 300 KDGYSWWAGRMRRALE--LYDEFRIDHFRGFAGY-WAVPADAK---TAMNGRWKVGPGKSFFD----AIKKAVGKIDIIA 369 (538)
T ss_pred hcCcHHHHHHHHHHHH--hCCeEEecchhhhhee-eeccCCCC---CCCCCeeeeCCHHHHHH----HHHHHcCCCCEEE
Confidence 1222556677777666 7899999965543210 00000000 00001112223344443 4566778899999
Q ss_pred EcCC
Q psy9001 465 EDVS 468 (1351)
Q Consensus 465 E~~~ 468 (1351)
|+..
T Consensus 370 EDLG 373 (538)
T PLN02635 370 EDLG 373 (538)
T ss_pred eeCC
Confidence 9763
No 187
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=76.89 E-value=1.7 Score=52.19 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeec
Q psy9001 1032 PEQLKYLVDECHKAGLYVLLDVVH 1055 (1351)
Q Consensus 1032 ~edfK~LV~~aH~~GI~VILDVV~ 1055 (1351)
.++|++|++.||+.||+||+||-.
T Consensus 46 ~~~~~~l~~~a~~~~~~v~~Disp 69 (357)
T PF05913_consen 46 LERLKELLKLAKELGMEVIADISP 69 (357)
T ss_dssp HHHHHHHHHHHHHCT-EEEEEE-C
T ss_pred HHHHHHHHHHHHHCCCEEEEECCH
Confidence 789999999999999999999843
No 188
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=75.31 E-value=15 Score=46.26 Aligned_cols=135 Identities=19% Similarity=0.246 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHcCCEEEEEeecc--ccccCCcCC---c--ccC-------CCCCCcCcccCCCCCCCCCCCccCCCCCH
Q psy9001 320 EQLKYLVDECHKAGLYVLLDVVHS--HASKNVLDG---L--NEF-------DGTQACFFHDGPRGTHPLWDSRLFNYSEI 385 (1351)
Q Consensus 320 ~efk~LV~~~H~~GI~VILDvV~N--H~~~~~~~~---~--~~f-------~g~~~~yy~~~~~~~~~~w~~~~ln~~~p 385 (1351)
++++++.+.||++||++|-|+-+. +-|.+ -|. + ... -|..+.+|... -.+|+.+.+|+..-
T Consensus 198 ~Q~~~~~~yA~~~Gi~L~gDLpigV~~dsaD-vWa~~~lF~l~~~~~p~~vaGaPPD~Fs~~----GQ~WG~P~y~w~~l 272 (497)
T PRK14508 198 RQWKALKAYANDKGIEIIGDLPIYVAYDSAD-VWANPELFKLDEDGKPTVVAGVPPDYFSET----GQLWGNPVYNWDAL 272 (497)
T ss_pred HHHHHHHHHHHHCCCEEEEeeecccCCCCHH-HHcChhhhcCCCCCCcceeeeCCCCCCCcc----cCcCCCCCcCHHHH
Confidence 367888899999999999999863 32222 111 1 111 23344555432 13577666655321
Q ss_pred --HHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEE
Q psy9001 386 --EVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITI 463 (1351)
Q Consensus 386 --~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~i 463 (1351)
.--+.+++-+++=++ .+|.+|+|-+--+.+. ...+.+-. ....|.-+.....+++..+. ...++..+|
T Consensus 273 ~~~gy~ww~~rlr~~~~--~~~~lRIDH~~Gf~r~-W~IP~~~~---~a~~G~~v~~p~~~l~~~l~----~e~~~~~vi 342 (497)
T PRK14508 273 RKDGYRWWIERLRRSFK--LYDIVRIDHFRGFEAY-WEIPAGEK---TAINGRWVPGPGKDLFEAVK----EELGDLPII 342 (497)
T ss_pred HhcCcHHHHHHHHHHHH--hCCeEEecchhhhcee-eeecCCCC---CCCCCeeecCCHHHHHHHHH----HHhCCCCEE
Confidence 123456677766666 7899999966544210 00011100 00001111223344555444 334789999
Q ss_pred EEcCCC
Q psy9001 464 AEDVSG 469 (1351)
Q Consensus 464 aE~~~~ 469 (1351)
||+...
T Consensus 343 gEDLG~ 348 (497)
T PRK14508 343 AEDLGV 348 (497)
T ss_pred EeECCC
Confidence 997643
No 189
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=73.34 E-value=7.2 Score=46.70 Aligned_cols=96 Identities=18% Similarity=0.226 Sum_probs=57.4
Q ss_pred HHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhC
Q psy9001 1037 YLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQ 1116 (1351)
Q Consensus 1037 ~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~yWl~eyg 1116 (1351)
..|++||++|++|+-=+.+...+.. ..+..+ | -.+++.+..+++.|.-.++.||
T Consensus 50 ~~idaAHknGV~Vlgti~~e~~~~~--~~~~~l-----------------------L-~~~~~~~~~~a~kLv~lak~yG 103 (339)
T cd06547 50 DWINAAHRNGVPVLGTFIFEWTGQV--EWLEDF-----------------------L-KKDEDGSFPVADKLVEVAKYYG 103 (339)
T ss_pred HHHHHHHhcCCeEEEEEEecCCCch--HHHHHH-----------------------h-ccCcccchHHHHHHHHHHHHhC
Confidence 5788999999999986654422110 001000 0 0112344445555555666689
Q ss_pred CCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChh-HHHHHHHHHHHHHhhCCCeEEEE
Q psy9001 1117 FDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTD-ALIYLMVANKFLHDKYPEIITIA 1177 (1351)
Q Consensus 1117 VDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~-~~~fl~~~~~~l~~~~Pd~ilIa 1177 (1351)
+||+=+|.=.... ...+.+ -..|++++.+.+++..|+..+|=
T Consensus 104 fDGw~iN~E~~~~-------------------~~~~~~~l~~F~~~L~~~~~~~~~~~~v~W 146 (339)
T cd06547 104 FDGWLINIETELG-------------------DAEKAKRLIAFLRYLKAKLHENVPGSLVIW 146 (339)
T ss_pred CCceEeeeeccCC-------------------cHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Confidence 9999998765330 011222 45688999999998888766653
No 190
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=73.01 E-value=21 Score=42.04 Aligned_cols=89 Identities=20% Similarity=0.236 Sum_probs=58.8
Q ss_pred HHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy9001 1035 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEE 1114 (1351)
Q Consensus 1035 fK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~yWl~e 1114 (1351)
..++++.||++|++|++=|- |... .+ ++ ...| .--..++..|+-+++++.-++++
T Consensus 47 ~~~~~~~a~~~~~kv~~~i~-~~~~-~~------~~---~~~~--------------~~~l~~~~~r~~fi~~iv~~l~~ 101 (313)
T cd02874 47 DERLIEAAKRRGVKPLLVIT-NLTN-GN------FD---SELA--------------HAVLSNPEARQRLINNILALAKK 101 (313)
T ss_pred CHHHHHHHHHCCCeEEEEEe-cCCC-CC------CC---HHHH--------------HHHhcCHHHHHHHHHHHHHHHHH
Confidence 36899999999999997652 2111 00 00 0000 01234678899999999999999
Q ss_pred hCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChh-HHHHHHHHHHHHHhh
Q psy9001 1115 YQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTD-ALIYLMVANKFLHDK 1169 (1351)
Q Consensus 1115 ygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~-~~~fl~~~~~~l~~~ 1169 (1351)
||+||+-+|--..- ..+.+ -..|+++++..+++.
T Consensus 102 ~~~DGidiDwE~~~---------------------~~d~~~~~~fl~~lr~~l~~~ 136 (313)
T cd02874 102 YGYDGVNIDFENVP---------------------PEDREAYTQFLRELSDRLHPA 136 (313)
T ss_pred hCCCcEEEecccCC---------------------HHHHHHHHHHHHHHHHHhhhc
Confidence 99999999964311 11222 467888888888754
No 191
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=72.39 E-value=5.6 Score=46.76 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeec
Q psy9001 1032 PEQLKYLVDECHKAGLYVLLDVVH 1055 (1351)
Q Consensus 1032 ~edfK~LV~~aH~~GI~VILDVV~ 1055 (1351)
..-|++|++.||+.||+||.||-+
T Consensus 48 ~~~~~ell~~Anklg~~vivDvnP 71 (360)
T COG3589 48 FHRFKELLKEANKLGLRVIVDVNP 71 (360)
T ss_pred HHHHHHHHHHHHhcCcEEEEEcCH
Confidence 456999999999999999999843
No 192
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=71.85 E-value=5.3 Score=46.00 Aligned_cols=51 Identities=22% Similarity=0.253 Sum_probs=39.5
Q ss_pred HHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy9001 1035 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEE 1114 (1351)
Q Consensus 1035 fK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~yWl~e 1114 (1351)
.++||+.+|++|++|++-+.+. ||+...+.++..+.+
T Consensus 68 p~~~i~~l~~~g~~~~~~~~P~-------------------------------------------v~~w~~~~~~~~~~~ 104 (265)
T cd06589 68 PKSMIDELHDNGVKLVLWIDPY-------------------------------------------IREWWAEVVKKLLVS 104 (265)
T ss_pred HHHHHHHHHHCCCEEEEEeChh-------------------------------------------HHHHHHHHHHHhhcc
Confidence 5789999999999999986321 266666666666567
Q ss_pred hCCCeEEEcCcccc
Q psy9001 1115 YQFDGFRFDGVTSM 1128 (1351)
Q Consensus 1115 ygVDGFRfD~a~~m 1128 (1351)
+|||||=+|...-.
T Consensus 105 ~Gvdg~w~D~~E~~ 118 (265)
T cd06589 105 LGVDGFWTDMGEPS 118 (265)
T ss_pred CCCCEEeccCCCCC
Confidence 89999999987643
No 193
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=70.96 E-value=11 Score=42.94 Aligned_cols=87 Identities=15% Similarity=0.265 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHH
Q psy9001 319 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWY 398 (1351)
Q Consensus 319 ~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~~W 398 (1351)
..++..++++||++|++|++=|- ++.... + .--..+++.|+.+++++.-+
T Consensus 45 ~~~~~~~~~~~~~~~~kvl~sig-g~~~~~--------------------------~---~~~~~~~~~r~~fi~~lv~~ 94 (253)
T cd06545 45 RSELNSVVNAAHAHNVKILISLA-GGSPPE--------------------------F---TAALNDPAKRKALVDKIINY 94 (253)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEc-CCCCCc--------------------------c---hhhhcCHHHHHHHHHHHHHH
Confidence 45789999999999999997432 211000 0 01235788899999999999
Q ss_pred HHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhh
Q psy9001 399 LDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDK 456 (1351)
Q Consensus 399 ~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~ 456 (1351)
+++|++||.-+|.-... .. ...-..|++++++.+++.
T Consensus 95 ~~~~~~DGIdiDwE~~~--------------------~~-~~~~~~fv~~Lr~~l~~~ 131 (253)
T cd06545 95 VVSYNLDGIDVDLEGPD--------------------VT-FGDYLVFIRALYAALKKE 131 (253)
T ss_pred HHHhCCCceeEEeeccC--------------------cc-HhHHHHHHHHHHHHHhhc
Confidence 99999999999853211 00 012346899999988764
No 194
>PF08533 Glyco_hydro_42C: Beta-galactosidase C-terminal domain; InterPro: IPR013739 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found at the C terminus of beta-galactosidase enzymes that belong to the glycosyl hydrolase 42 family []. ; GO: 0004565 beta-galactosidase activity; PDB: 1KWK_A 1KWG_A.
Probab=70.93 E-value=11 Score=33.22 Aligned_cols=13 Identities=31% Similarity=0.322 Sum_probs=10.1
Q ss_pred EEeCCcEEEEEEE
Q psy9001 628 LYLPTRTGLILTT 640 (1351)
Q Consensus 628 l~LPpls~~vl~~ 640 (1351)
++|||.++.||+.
T Consensus 46 ~~L~p~~v~Vl~~ 58 (58)
T PF08533_consen 46 LTLPPYGVRVLKE 58 (58)
T ss_dssp SEE-TTEEEEEE-
T ss_pred EEECCCEEEEEEC
Confidence 7999999999973
No 195
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=69.71 E-value=5.4 Score=45.93 Aligned_cols=51 Identities=22% Similarity=0.247 Sum_probs=39.4
Q ss_pred HHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHH
Q psy9001 322 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDE 401 (1351)
Q Consensus 322 fk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~~W~~e 401 (1351)
.++||+.+|++|++|++-+.+. |+++..+.++..+.+
T Consensus 68 p~~~i~~l~~~g~~~~~~~~P~-------------------------------------------v~~w~~~~~~~~~~~ 104 (265)
T cd06589 68 PKSMIDELHDNGVKLVLWIDPY-------------------------------------------IREWWAEVVKKLLVS 104 (265)
T ss_pred HHHHHHHHHHCCCEEEEEeChh-------------------------------------------HHHHHHHHHHHhhcc
Confidence 5789999999999999855332 266777777766567
Q ss_pred cCCCcccccccccc
Q psy9001 402 YQFDGFRFDGVTSM 415 (1351)
Q Consensus 402 ~~vDGfR~D~a~~~ 415 (1351)
+|||||-+|...-.
T Consensus 105 ~Gvdg~w~D~~E~~ 118 (265)
T cd06589 105 LGVDGFWTDMGEPS 118 (265)
T ss_pred CCCCEEeccCCCCC
Confidence 99999999976543
No 196
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=69.68 E-value=9.8 Score=38.42 Aligned_cols=75 Identities=16% Similarity=0.141 Sum_probs=44.8
Q ss_pred cCCCCCccccccccccccCceeEEE-------EEEEEEE-eecCCC----Cccccceee----cCCCeEEEEcCCCCCCC
Q psy9001 49 AGLFGTPEQLKYLVDECHKAGLLCF-------MHVVCAA-GDFNNW----NREEFAYKK----LDFGKWELVLPPNPDGS 112 (1351)
Q Consensus 49 ~~~f~~~~~l~~l~~~~~~~gv~F~-------A~~V~Lv-GDFN~W----d~~~~~M~k----~~~GvW~~~ip~~~~G~ 112 (1351)
+.+||.| ...|.... .+.-++++ +++|.|+ ||-++| .....+|++ .....|++.|+....
T Consensus 4 ~ai~H~~-~s~y~y~~-~~~~l~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~~~~~fDyye~~l~~~~~-- 79 (120)
T PF02903_consen 4 AAIYHRP-DSEYAYPY-DGDTLHIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIASDELFDYYEATLKLPEK-- 79 (120)
T ss_dssp GG-B--S-STTTEEEE-CTTEEEEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEEEESSEEEEEEEEE-TTS--
T ss_pred ccEEecC-CCCceEec-CCCEEEEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEEeCCCeEEEEEEEECCCC--
Confidence 4567777 34554433 33344444 7789986 776655 334578887 246899999975432
Q ss_pred cccCcccEEEEEEEecCCcee
Q psy9001 113 CKLTHLSQVKLVVRNQHGHLL 133 (1351)
Q Consensus 113 ~~~~~g~~Y~y~i~~~~g~~~ 133 (1351)
.-.|.|+|.+ +|+..
T Consensus 80 -----r~~Y~F~l~~-~~~~~ 94 (120)
T PF02903_consen 80 -----RLRYYFELED-GGETY 94 (120)
T ss_dssp -----EEEEEEEEEE-TTEEE
T ss_pred -----eEEEEEEEEe-CCEEE
Confidence 2589999997 66544
No 197
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=68.52 E-value=9.2 Score=37.36 Aligned_cols=51 Identities=18% Similarity=0.451 Sum_probs=34.5
Q ss_pred EEEEEEEe---ecCCCCccccceee---cCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCC
Q psy9001 74 MHVVCAAG---DFNNWNREEFAYKK---LDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHG 130 (1351)
Q Consensus 74 A~~V~LvG---DFN~Wd~~~~~M~k---~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g 130 (1351)
.+.|.|+| ++.+|+....+|.. ...+.|++.+. +..|. --.|||.+.+.+|
T Consensus 17 G~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~~-lp~~~-----~veyKyv~~~~~~ 73 (99)
T cd05809 17 GETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTVH-LPAGR-----NIEFKAIKKSKDG 73 (99)
T ss_pred CCEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEEE-ecCCC-----cEEEEEEEEcCCC
Confidence 46889999 78899876544543 23589988773 33332 2479998876555
No 198
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=68.45 E-value=4 Score=49.15 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccc
Q psy9001 319 PEQLKYLVDECHKAGLYVLLDVVHSH 344 (1351)
Q Consensus 319 ~~efk~LV~~~H~~GI~VILDvV~NH 344 (1351)
.++|++|++.||+.||+||+||-+.-
T Consensus 46 ~~~~~~l~~~a~~~~~~v~~Disp~~ 71 (357)
T PF05913_consen 46 LERLKELLKLAKELGMEVIADISPKV 71 (357)
T ss_dssp HHHHHHHHHHHHHCT-EEEEEE-CCH
T ss_pred HHHHHHHHHHHHHCCCEEEEECCHHH
Confidence 68999999999999999999997653
No 199
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=68.36 E-value=15 Score=43.54 Aligned_cols=62 Identities=19% Similarity=0.348 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHHH
Q psy9001 318 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRW 397 (1351)
Q Consensus 318 ~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~~ 397 (1351)
+..++++-|+.||++|++|+|=+ +.. .+ ......+.-|+.+++++.-
T Consensus 58 ~~~~~~~~i~~~q~~G~KVllSi-----GG~--------~~--------------------~~~~~~~~~~~~fa~sl~~ 104 (312)
T cd02871 58 SPAEFKADIKALQAKGKKVLISI-----GGA--------NG--------------------HVDLNHTAQEDNFVDSIVA 104 (312)
T ss_pred ChHHHHHHHHHHHHCCCEEEEEE-----eCC--------CC--------------------ccccCCHHHHHHHHHHHHH
Confidence 56789999999999999999754 100 00 0123466778889999999
Q ss_pred HHHHcCCCccccccc
Q psy9001 398 YLDEYQFDGFRFDGV 412 (1351)
Q Consensus 398 W~~e~~vDGfR~D~a 412 (1351)
+++++++||+-+|--
T Consensus 105 ~~~~~g~DGiDiD~E 119 (312)
T cd02871 105 IIKEYGFDGLDIDLE 119 (312)
T ss_pred HHHHhCCCeEEEecc
Confidence 999999999999853
No 200
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=65.44 E-value=11 Score=45.14 Aligned_cols=59 Identities=19% Similarity=0.185 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCch-HHHHHHHHHHHHHhhCCCeEEE
Q psy9001 386 EVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTD-ALIYLMVANKFLHDKYPEIITI 463 (1351)
Q Consensus 386 ~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~-~~~f~~~~~~~v~~~~P~~~~i 463 (1351)
+.+..+++.|.-.++.||+||+=+|.-.... ...+.+ -..|++.+++.+++..|+..+|
T Consensus 86 ~~~~~~a~kLv~lak~yGfDGw~iN~E~~~~-------------------~~~~~~~l~~F~~~L~~~~~~~~~~~~v~ 145 (339)
T cd06547 86 DGSFPVADKLVEVAKYYGFDGWLINIETELG-------------------DAEKAKRLIAFLRYLKAKLHENVPGSLVI 145 (339)
T ss_pred ccchHHHHHHHHHHHHhCCCceEeeeeccCC-------------------cHHHHHHHHHHHHHHHHHHhhcCCCcEEE
Confidence 3344555666666667999999887533220 011222 3479999999999988876665
No 201
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=65.28 E-value=16 Score=35.63 Aligned_cols=50 Identities=20% Similarity=0.466 Sum_probs=34.5
Q ss_pred EEEEEEee---cCCCCc-cccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecC
Q psy9001 75 HVVCAAGD---FNNWNR-EEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQH 129 (1351)
Q Consensus 75 ~~V~LvGD---FN~Wd~-~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~ 129 (1351)
++|.|+|+ +.+|+. ...+|.......|++.++-.... .--.|||.+...+
T Consensus 15 e~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~~p~~~-----~~ieYKyvi~~~~ 68 (99)
T cd05816 15 QSVYVTGSSPELGNWDPQKALKLSDVGFPIWEADIDISKDS-----FPFEYKYIIANKD 68 (99)
T ss_pred CEEEEEEChHHhCCCCccccccCCCCCCCcEEEEEEeCCCC-----ccEEEEEEEEeCC
Confidence 57888986 468986 45799877788998887432111 0147999998654
No 202
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=64.42 E-value=24 Score=42.20 Aligned_cols=120 Identities=20% Similarity=0.140 Sum_probs=65.1
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q psy9001 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNL 1108 (1351)
Q Consensus 1029 yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l 1108 (1351)
+-+.++..+|.++|+++||+|+||+=|+.+-.+- +.......|...+++--...|.+|-.++|
T Consensus 54 ~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDP-----------------g~Q~~P~aW~~~~~~~l~~~v~~yT~~vl 116 (332)
T PF07745_consen 54 YNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADP-----------------GKQNKPAAWANLSFDQLAKAVYDYTKDVL 116 (332)
T ss_dssp TTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BT-----------------TB-B--TTCTSSSHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCC-----------------CCCCCCccCCCCCHHHHHHHHHHHHHHHH
Confidence 5679999999999999999999999766543321 00112334544333333456777777777
Q ss_pred HHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChh-HHHHHHHHHHHHHhhCCCeEEEE
Q psy9001 1109 RWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTD-ALIYLMVANKFLHDKYPEIITIA 1177 (1351)
Q Consensus 1109 ~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~-~~~fl~~~~~~l~~~~Pd~ilIa 1177 (1351)
....+. |+ -.|.+..==....|.-++. |...+.+ -..+++...++|++..|++.++-
T Consensus 117 ~~l~~~-G~---~pd~VQVGNEin~Gmlwp~--------g~~~~~~~~a~ll~ag~~AVr~~~p~~kV~l 174 (332)
T PF07745_consen 117 QALKAA-GV---TPDMVQVGNEINNGMLWPD--------GKPSNWDNLAKLLNAGIKAVREVDPNIKVML 174 (332)
T ss_dssp HHHHHT-T-----ESEEEESSSGGGESTBTT--------TCTT-HHHHHHHHHHHHHHHHTHSSTSEEEE
T ss_pred HHHHHC-CC---CccEEEeCccccccccCcC--------CCccCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 776553 55 4666531000011111100 1112233 34477788899999999866544
No 203
>KOG1065|consensus
Probab=64.14 E-value=13 Score=48.47 Aligned_cols=94 Identities=22% Similarity=0.411 Sum_probs=57.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccC-CCCCCcCcccCCCCCC----CCCC--CccCCCCCHH
Q psy9001 314 GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-DGTQACFFHDGPRGTH----PLWD--SRLFNYSEIE 386 (1351)
Q Consensus 314 ~~~G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f-~g~~~~yy~~~~~~~~----~~w~--~~~ln~~~p~ 386 (1351)
..|+. ++.+|+.+|++|+++|+=+-++-..... ...+ +|.....+..+..|.. .-|- ..-.|+.||.
T Consensus 348 ~~fp~---~~~fv~~Lh~~G~kyvliidP~is~~~~---y~~y~~g~~~~v~I~~~~g~~~~lg~vwP~~~~fpDftnp~ 421 (805)
T KOG1065|consen 348 VWFPD---LKDFVDDLHARGFKYVLIIDPFISTNSS---YGPYDRGVAKDVLIKNREGSPKMLGEVWPGSTAFPDFTNPA 421 (805)
T ss_pred ccCcc---hHHHHHHHHhCCCeEEEEeCCccccCcc---chhhhhhhhhceeeecccCchhhhcccCCCcccccccCCch
Confidence 44555 9999999999999987644422111110 0111 1111112211111111 1222 3457999999
Q ss_pred HHHHHHHHHHHHHHHcCCCcccccccc
Q psy9001 387 VLRFLLSNLRWYLDEYQFDGFRFDGVT 413 (1351)
Q Consensus 387 v~~~l~~~l~~W~~e~~vDGfR~D~a~ 413 (1351)
+..+..+.++-.=++.++|||-+|+-.
T Consensus 422 ~~~Ww~~~~~~fh~~vp~dg~wiDmnE 448 (805)
T KOG1065|consen 422 VVEWWLDELKRFHDEVPFDGFWIDMNE 448 (805)
T ss_pred HHHHHHHHHHhhcccCCccceEEECCC
Confidence 999999999888888999999999744
No 204
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=62.94 E-value=24 Score=41.51 Aligned_cols=89 Identities=21% Similarity=0.235 Sum_probs=57.0
Q ss_pred HHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHH
Q psy9001 322 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDE 401 (1351)
Q Consensus 322 fk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~~W~~e 401 (1351)
..++++.+|++|++|++=| -+..... |+. ..| .--.++++.|+-+++++.-++++
T Consensus 47 ~~~~~~~a~~~~~kv~~~i-~~~~~~~-------~~~---~~~--------------~~~l~~~~~r~~fi~~iv~~l~~ 101 (313)
T cd02874 47 DERLIEAAKRRGVKPLLVI-TNLTNGN-------FDS---ELA--------------HAVLSNPEARQRLINNILALAKK 101 (313)
T ss_pred CHHHHHHHHHCCCeEEEEE-ecCCCCC-------CCH---HHH--------------HHHhcCHHHHHHHHHHHHHHHHH
Confidence 3689999999999999643 2211100 000 000 01134688899999999999999
Q ss_pred cCCCccccccccccccccCCCCCCCCCCccccCCCccCc-hHHHHHHHHHHHHHhh
Q psy9001 402 YQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDT-DALIYLMVANKFLHDK 456 (1351)
Q Consensus 402 ~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~f~~~~~~~v~~~ 456 (1351)
+++||+-+|--..- ..+. .-..|++++++.+++.
T Consensus 102 ~~~DGidiDwE~~~---------------------~~d~~~~~~fl~~lr~~l~~~ 136 (313)
T cd02874 102 YGYDGVNIDFENVP---------------------PEDREAYTQFLRELSDRLHPA 136 (313)
T ss_pred hCCCcEEEecccCC---------------------HHHHHHHHHHHHHHHHHhhhc
Confidence 99999998853210 0111 2357889999988754
No 205
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=62.76 E-value=31 Score=43.75 Aligned_cols=137 Identities=14% Similarity=0.142 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecc--cccCCc---cccC-------cC-CCCCCCccccCCCCCCCCCCCCCCCCCCCH
Q psy9001 1032 PEQLKYLVDECHKAGLYVLLDVVHS--HASKNV---LDGL-------NE-FDGTQACFFHDGPRGTHPLWDSRLFNYSEI 1098 (1351)
Q Consensus 1032 ~edfK~LV~~aH~~GI~VILDVV~N--Hts~~~---~~~l-------~~-~dg~~~~yf~~~~~g~~~~w~~~dlN~~np 1098 (1351)
-++++++-+.|+++||++|.|+.+- +-|.+. .+-+ .. -+|.++.||... -.+|+..-+|...-
T Consensus 211 ~~Q~~~l~~yA~~~~I~L~gDlpi~v~~dsaDvWa~~~~F~l~~~~GaP~~agvpPd~Fs~~----GQ~WG~P~y~w~~l 286 (513)
T TIGR00217 211 FSQFQALKRYANDMGIGLYGDLPVFVAYDSADVWADPELFCLRASAGAPKPAGLGPDYFLEQ----GQNWGLPPYDWNVL 286 (513)
T ss_pred HHHHHHHHHHHhcCCcEEEEeCcceeCCCcHHHHhCHHHhCCCcccCCCCCCCCCCCccccc----CCCCCCCCcCHHHH
Confidence 4678889999999999999999874 222221 0000 01 333335566532 23566555544321
Q ss_pred HHH--HHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCC-eEE
Q psy9001 1099 EVL--RFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPE-IIT 1175 (1351)
Q Consensus 1099 ~Vr--~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd-~il 1175 (1351)
+-. +..++-+++=++ .+|++|+|-+.-+.+. .-+..+. .....|....-+..+++..+..++ +. +.+
T Consensus 287 ~~~gy~ww~~rlr~~~~--~~d~lRIDHf~Gf~r~-w~IP~g~---~ta~~G~wv~~Pg~~l~~~l~~e~----~~~~~v 356 (513)
T TIGR00217 287 KARGYEWWIKRLGANMQ--YADILRIDHFRGFVSL-WWVPAGE---STAFNGAWVHYPGDDFFNILANES----KDNLKI 356 (513)
T ss_pred HhcCcHHHHHHHHHHHH--hCCeEEecchhhhcee-eeecCCC---CCCCCCeeEeCCHHHHHHHHHHHc----CCCCcE
Confidence 111 123444444444 7899999987654321 0011110 011112223334555555444443 44 889
Q ss_pred EEccCCC
Q psy9001 1176 IAEDVSG 1182 (1351)
Q Consensus 1176 IaE~~~~ 1182 (1351)
|||+...
T Consensus 357 IaEDLG~ 363 (513)
T TIGR00217 357 IGEDLGT 363 (513)
T ss_pred EeeeCCC
Confidence 9998643
No 206
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=62.03 E-value=89 Score=34.03 Aligned_cols=66 Identities=26% Similarity=0.262 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHHc--CCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q psy9001 1031 TPEQLKYLVDECHKA--GLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNL 1108 (1351)
Q Consensus 1031 t~edfK~LV~~aH~~--GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l 1108 (1351)
..+.....+++++++ |++|++=+-- ... . ..+ --..++..|+.+++++
T Consensus 47 ~~~~~~~~i~~l~~~~~g~kv~~sigg----~~~---------~--~~~---------------~~~~~~~~~~~f~~~~ 96 (210)
T cd00598 47 SEEPLKGALEELASKKPGLKVLISIGG----WTD---------S--SPF---------------TLASDPASRAAFANSL 96 (210)
T ss_pred ccHHHHHHHHHHHHhCCCCEEEEEEcC----CCC---------C--CCc---------------hhhcCHHHHHHHHHHH
Confidence 345677788888887 9999987610 000 0 000 1235678888899999
Q ss_pred HHHHHHhCCCeEEEcCcc
Q psy9001 1109 RWYLEEYQFDGFRFDGVT 1126 (1351)
Q Consensus 1109 ~yWl~eygVDGFRfD~a~ 1126 (1351)
.-++++|++||+-+|--.
T Consensus 97 ~~~v~~~~~DGidiD~E~ 114 (210)
T cd00598 97 VSFLKTYGFDGVDIDWEY 114 (210)
T ss_pred HHHHHHcCCCceEEeeeC
Confidence 999999999999999754
No 207
>KOG3625|consensus
Probab=61.94 E-value=17 Score=47.47 Aligned_cols=69 Identities=20% Similarity=0.213 Sum_probs=46.0
Q ss_pred CCCCCCCCC-----HHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHH
Q psy9001 1089 DSRLFNYSE-----IEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVAN 1163 (1351)
Q Consensus 1089 ~~~dlN~~n-----p~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~ 1163 (1351)
++-.|+|+| |-+.+.|.+-..-=++ =+||+|+|.+.+- ++...+-+.
T Consensus 497 DsVKLryG~kpeDsPyLWq~M~kY~e~tAr--iFdG~RlDNcHsT--------------------------PlHVaEylL 548 (1521)
T KOG3625|consen 497 DSVKLRYGNKPEDSPYLWQHMKKYTEITAR--IFDGVRLDNCHST--------------------------PLHVAEYLL 548 (1521)
T ss_pred ceeeeccCCCcccChHHHHHHHHHHHHHHH--HhcceeeccCCCC--------------------------chhHHHHHH
Confidence 344566653 5566665554443333 4799999999754 344445566
Q ss_pred HHHHhhCCCeEEEEccCCCCCC
Q psy9001 1164 KFLHDKYPEIITIAEDVSGMPA 1185 (1351)
Q Consensus 1164 ~~l~~~~Pd~ilIaE~~~~~p~ 1185 (1351)
++.++.+|+.+++||-.++...
T Consensus 549 d~ARk~nPnlYVvAELFtgSe~ 570 (1521)
T KOG3625|consen 549 DAARKLNPNLYVVAELFTGSED 570 (1521)
T ss_pred HHHHhcCCCeEEEeeeccCCcc
Confidence 7778889999999998766544
No 208
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=61.51 E-value=45 Score=43.80 Aligned_cols=139 Identities=15% Similarity=0.120 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHcCC--EEEEEeecc--cccCCc---cc--cCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHH-
Q psy9001 1032 PEQLKYLVDECHKAGL--YVLLDVVHS--HASKNV---LD--GLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVL- 1101 (1351)
Q Consensus 1032 ~edfK~LV~~aH~~GI--~VILDVV~N--Hts~~~---~~--~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr- 1101 (1351)
-++++++-+.|+++|| ++|.|+-+- +-|.+. .+ .+..--|.++++|... -.+|+..-+|...-.-.
T Consensus 354 ~~Ql~~~~~~A~~~Gm~igL~gDLpvgv~~dsaDvWa~~~~F~l~~~~GaPPD~fs~~----GQ~WG~P~y~w~~l~~~g 429 (695)
T PRK11052 354 DSQFAACWQLSQQLGMPIGLYRDLAVGVAEGGAETWCDRELYCLKASVGAPPDILGPL----GQNWGLPPMDPHVLQARA 429 (695)
T ss_pred HHHHHHHHHHHHHCCCceeEEEeeeceECCCcHHHhCCHHHhcCCCcCCCCCCcCCcc----cccCCCcCcCHHHHHhcC
Confidence 4789999999999999 679999773 222221 00 0122235666777532 23566554443321111
Q ss_pred -HHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEccC
Q psy9001 1102 -RFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDV 1180 (1351)
Q Consensus 1102 -~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~~ 1180 (1351)
+..++-++.-++ ++|++|+|-+.-+.+. .-+..+. ....|....-+..+++..+ .+.+..+++.+|||+.
T Consensus 430 y~ww~~rlr~~~~--~~g~lRIDH~~Gl~rl-W~IP~g~----~a~~G~yv~~P~~~ll~~l--ales~~~~~~vIgEDL 500 (695)
T PRK11052 430 YQPFIDLLRANMQ--HCGALRIDHVMSLLRL-WWIPYGE----TADQGAYVHYPVDDLLAIL--ALESQRHRCMVIGEDL 500 (695)
T ss_pred cHHHHHHHHHHHH--hCCEEEecchhhhhee-eecCCCC----CCCCCeeEeCCHHHHHHHH--HHHHhcCCCCEEEeeC
Confidence 123444555555 6899999988655322 0011111 1111222222233333211 2245567899999987
Q ss_pred CCC
Q psy9001 1181 SGM 1183 (1351)
Q Consensus 1181 ~~~ 1183 (1351)
..-
T Consensus 501 G~V 503 (695)
T PRK11052 501 GTV 503 (695)
T ss_pred CCC
Confidence 433
No 209
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=60.83 E-value=70 Score=38.54 Aligned_cols=81 Identities=16% Similarity=0.134 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEee-ccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHH
Q psy9001 318 TPEQLKYLVDECHKAGLYVLLDVV-HSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLR 396 (1351)
Q Consensus 318 ~~~efk~LV~~~H~~GI~VILDvV-~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~ 396 (1351)
|.+|+|+||+-|.++||.||-.+- +.|+..-....+ .+......++.. . . ..-....||..+|++.+|+.+.+.
T Consensus 68 T~~di~eiv~yA~~rgI~vIPEID~PGH~~a~~~~~p-~l~~~~~~~~~~-~-~--~~~~~~~L~~~~~~t~~fl~~vl~ 142 (348)
T cd06562 68 TPEDVKEIVEYARLRGIRVIPEIDTPGHTGSWGQGYP-ELLTGCYAVWRK-Y-C--PEPPCGQLNPTNPKTYDFLKTLFK 142 (348)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccCchhhHHHHHhCh-hhhCCCCccccc-c-c--cCCCCccccCCChhHHHHHHHHHH
Confidence 789999999999999999999884 788754210000 000000000000 0 0 000124699999999999999999
Q ss_pred HHHHHcC
Q psy9001 397 WYLDEYQ 403 (1351)
Q Consensus 397 ~W~~e~~ 403 (1351)
-.++-|.
T Consensus 143 E~~~lF~ 149 (348)
T cd06562 143 EVSELFP 149 (348)
T ss_pred HHHHhcC
Confidence 9988543
No 210
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=59.77 E-value=8.3 Score=48.59 Aligned_cols=137 Identities=20% Similarity=0.258 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecc--cccCCc---ccc--CcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHH--
Q psy9001 1032 PEQLKYLVDECHKAGLYVLLDVVHS--HASKNV---LDG--LNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLR-- 1102 (1351)
Q Consensus 1032 ~edfK~LV~~aH~~GI~VILDVV~N--Hts~~~---~~~--l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~-- 1102 (1351)
-++++++.+.|+++||++|.|+.+- +-|.+. .+- +..--|.++++|... | .+|+...+|. +..+
T Consensus 191 ~~Q~~~~~~~A~~~gI~L~gDlpigv~~dsaDvW~~~~lF~~~~~aGaPPD~fs~~--G--Q~WG~P~y~w---~~l~~~ 263 (496)
T PF02446_consen 191 FKQWKAAKEYAREMGIGLIGDLPIGVSPDSADVWANPELFLLDASAGAPPDYFSPT--G--QNWGNPPYNW---DALKED 263 (496)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEESS--SSSHHHHH-GGGB-B-EEEEE-SSSSSSS-----EEEEEE-B-H---HHHHHT
T ss_pred HHHHHHHHHHHHHCCCEEEEeccceECCCcHHHHhCHHHHhCcCeeCCCCCCCCcc--c--ccCCCCCcCH---HHHHHc
Confidence 4789999999999999999999864 222221 000 111224556666432 1 2455443433 2222
Q ss_pred ---HHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEcc
Q psy9001 1103 ---FLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAED 1179 (1351)
Q Consensus 1103 ---~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~ 1179 (1351)
..++-+++=++ .+|++|+|-+.-+.+.= .+.. +......|.....+...++..+..+... +..+|||+
T Consensus 264 gy~ww~~rl~~~~~--~~d~lRIDH~~Gf~r~W-~IP~---~~~~a~~G~~~~~p~~~ll~~l~~e~~r---~~~vigED 334 (496)
T PF02446_consen 264 GYRWWIDRLRANMR--LFDALRIDHFRGFFRYW-WIPA---GGETAIDGAWVRYPGEDLLAILALESGR---DCLVIGED 334 (496)
T ss_dssp TTHHHHHHHHHHHC--C-SEEEEETGGGGTEEE-EEET---T-SSSTT-EEEE--HHHHHHHHHHHHS----S-EEEE--
T ss_pred CCHHHHHHHHHHHH--hCCchHHHHHHHHHhee-EecC---CCCCCCCceeecchHHHHHHHHHHHcCC---CCcEEEee
Confidence 33444444333 78999999887554320 0000 0111111222233345555555444422 89999998
Q ss_pred CCCCC
Q psy9001 1180 VSGMP 1184 (1351)
Q Consensus 1180 ~~~~p 1184 (1351)
....|
T Consensus 335 LG~vp 339 (496)
T PF02446_consen 335 LGTVP 339 (496)
T ss_dssp TSS--
T ss_pred cCCCc
Confidence 74333
No 211
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=59.76 E-value=22 Score=43.00 Aligned_cols=77 Identities=13% Similarity=0.145 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCC-CccCCCCCHHHHHHHHHHHHHH
Q psy9001 320 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWD-SRLFNYSEIEVLRFLLSNLRWY 398 (1351)
Q Consensus 320 ~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~-~~~ln~~~p~v~~~l~~~l~~W 398 (1351)
+.|.++|+.|+++||+|||-+. .++... |-...+ +.--..+..|....++ ...+++.+|.+|+++...++..
T Consensus 47 ~~lD~~l~~a~~~Gi~viL~~~-~~~~P~--Wl~~~~----Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l 119 (374)
T PF02449_consen 47 SWLDRVLDLAAKHGIKVILGTP-TAAPPA--WLYDKY----PEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRAL 119 (374)
T ss_dssp HHHHHHHHHHHCTT-EEEEEEC-TTTS-H--HHHCCS----GCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCeEEEEec-cccccc--chhhhc----ccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHH
Confidence 4588999999999999999775 232221 100000 0000111122222222 1346788999999999888888
Q ss_pred HHHcC
Q psy9001 399 LDEYQ 403 (1351)
Q Consensus 399 ~~e~~ 403 (1351)
++.|+
T Consensus 120 ~~~y~ 124 (374)
T PF02449_consen 120 AERYG 124 (374)
T ss_dssp HHHHT
T ss_pred Hhhcc
Confidence 88765
No 212
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=59.71 E-value=42 Score=42.62 Aligned_cols=91 Identities=13% Similarity=0.107 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccccCC-cCCc---cc---------CCCCCCcCcccCCCCCCCCCCCccCCCCC-
Q psy9001 319 PEQLKYLVDECHKAGLYVLLDVVHSHASKNV-LDGL---NE---------FDGTQACFFHDGPRGTHPLWDSRLFNYSE- 384 (1351)
Q Consensus 319 ~~efk~LV~~~H~~GI~VILDvV~NH~~~~~-~~~~---~~---------f~g~~~~yy~~~~~~~~~~w~~~~ln~~~- 384 (1351)
-++++++-+.|+.+||++|-|+-+-=..... -|.. .. -+|..+.||... -.+|+.+.+|...
T Consensus 211 ~~Q~~~l~~yA~~~~I~L~gDlpi~v~~dsaDvWa~~~~F~l~~~~GaP~~agvpPd~Fs~~----GQ~WG~P~y~w~~l 286 (513)
T TIGR00217 211 FSQFQALKRYANDMGIGLYGDLPVFVAYDSADVWADPELFCLRASAGAPKPAGLGPDYFLEQ----GQNWGLPPYDWNVL 286 (513)
T ss_pred HHHHHHHHHHHhcCCcEEEEeCcceeCCCcHHHHhCHHHhCCCcccCCCCCCCCCCCccccc----CCCCCCCCcCHHHH
Confidence 3578888899999999999999864322211 1110 11 233334555432 1357766666542
Q ss_pred -HHHHHHHHHHHHHHHHHcCCCcccccccccc
Q psy9001 385 -IEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM 415 (1351)
Q Consensus 385 -p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~ 415 (1351)
..--+..++-+++=++ .+|+.|+|-+--+
T Consensus 287 ~~~gy~ww~~rlr~~~~--~~d~lRIDHf~Gf 316 (513)
T TIGR00217 287 KARGYEWWIKRLGANMQ--YADILRIDHFRGF 316 (513)
T ss_pred HhcCcHHHHHHHHHHHH--hCCeEEecchhhh
Confidence 1222456666666666 7899999966544
No 213
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=58.38 E-value=15 Score=37.17 Aligned_cols=48 Identities=25% Similarity=0.428 Sum_probs=33.8
Q ss_pred EEEEEEEee---cCCCCc-cccceeec--CCCeEEEEcCCCCCCCcccCcccEEEEEEEe
Q psy9001 74 MHVVCAAGD---FNNWNR-EEFAYKKL--DFGKWELVLPPNPDGSCKLTHLSQVKLVVRN 127 (1351)
Q Consensus 74 A~~V~LvGD---FN~Wd~-~~~~M~k~--~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~ 127 (1351)
-++|.|+|+ +.+|+. .+.+|+.. ....|++.+.- +.+. --.|||.+..
T Consensus 15 ge~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~~W~~~v~l-p~~~-----~veYkY~~~~ 68 (120)
T cd05814 15 GEVVAVVGSLPVLGNWQPEKAVPLEKEDDDCNLWKASIEL-PRGV-----DFQYRYFVAV 68 (120)
T ss_pred CCEEEEEeChHHhCCCCHHhCeeCccCCCcCCccEEEEEE-CCCC-----eEEEEEEEEE
Confidence 357899998 899985 45799876 67899877632 2221 1478988864
No 214
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=57.70 E-value=87 Score=37.48 Aligned_cols=77 Identities=14% Similarity=0.146 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEee-ccccccCCcCCcccC--CCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHH
Q psy9001 318 TPEQLKYLVDECHKAGLYVLLDVV-HSHASKNVLDGLNEF--DGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSN 394 (1351)
Q Consensus 318 ~~~efk~LV~~~H~~GI~VILDvV-~NH~~~~~~~~~~~f--~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~ 394 (1351)
|.+|+++||+-|.++||.||-.+- +.|+..-.. ....+ .+.....+.. .......||..+|++.+++.+.
T Consensus 73 T~~di~elv~yA~~rgI~vIPEiD~PGH~~a~~~-~~p~l~~~~~~~~~~~~------~~~~~~~l~~~~~~t~~fl~~v 145 (329)
T cd06568 73 TQEDYKDIVAYAAERHITVVPEIDMPGHTNAALA-AYPELNCDGKAKPLYTG------IEVGFSSLDVDKPTTYEFVDDV 145 (329)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCcHHHHHHHH-hChhhccCCCCCccccc------cCCCCcccCCCCHHHHHHHHHH
Confidence 789999999999999999998874 677653110 00001 1110011100 0011246899999999999998
Q ss_pred HHHHHHH
Q psy9001 395 LRWYLDE 401 (1351)
Q Consensus 395 l~~W~~e 401 (1351)
+.-.++-
T Consensus 146 ~~E~~~~ 152 (329)
T cd06568 146 FRELAAL 152 (329)
T ss_pred HHHHHHh
Confidence 8888763
No 215
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=57.08 E-value=45 Score=38.43 Aligned_cols=66 Identities=15% Similarity=0.106 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q psy9001 1030 GTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLR 1109 (1351)
Q Consensus 1030 Gt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~ 1109 (1351)
+...++.+=|++|+++|++|+|=| +.. . ... |. .+ ..+++-|+..++++.
T Consensus 56 ~~~~~~~~~i~~~~~~g~KVllSi-----GG~-----~-----~~~-fs-------------~~-a~~~~~r~~f~~s~~ 105 (256)
T cd06546 56 PRFTTLWTELAILQSSGVKVMGML-----GGA-----A-----PGS-FS-------------RL-DDDDEDFERYYGQLR 105 (256)
T ss_pred chhhHHHHHHHHHHhCCCEEEEEE-----CCC-----C-----CCC-cc-------------cc-cCCHHHHHHHHHHHH
Confidence 344567766788999999999864 110 0 000 10 01 235566666778888
Q ss_pred HHHHHhCCCeEEEcCc
Q psy9001 1110 WYLEEYQFDGFRFDGV 1125 (1351)
Q Consensus 1110 yWl~eygVDGFRfD~a 1125 (1351)
-++++|++||+-||--
T Consensus 106 ~~~~~~~~DGiDiDwE 121 (256)
T cd06546 106 DMIRRRGLDGLDLDVE 121 (256)
T ss_pred HHHHHhCCCceEEeee
Confidence 8899999999999865
No 216
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=56.32 E-value=38 Score=40.68 Aligned_cols=107 Identities=18% Similarity=0.128 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHH
Q psy9001 1032 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYS-EIEVLRFLLSNLRW 1110 (1351)
Q Consensus 1032 ~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~-np~Vr~~lid~l~y 1110 (1351)
.+=+++|+++|+++||++.+ |-|..+-+. . .+......... ......-. ...+.+++..-++=
T Consensus 137 rDiv~El~~A~rk~Glk~G~---Y~S~~dw~~----~-------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ql~E 200 (346)
T PF01120_consen 137 RDIVGELADACRKYGLKFGL---YYSPWDWHH----P-------DYPPDEEGDEN--GPADGPGNWQRYYNEYWLAQLRE 200 (346)
T ss_dssp S-HHHHHHHHHHHTT-EEEE---EEESSSCCC----T-------TTTSSCHCHHC--C--HCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCeEEE---EecchHhcC----c-------ccCCCccCCcc--cccccchhhHhHhhhhhHHHHHH
Confidence 46799999999999999998 222222110 0 00000000000 00000000 11255688899999
Q ss_pred HHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEc
Q psy9001 1111 YLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAE 1178 (1351)
Q Consensus 1111 Wl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE 1178 (1351)
.++.|.+|.+=||....- ....... ..+.+.+++..|++++..=
T Consensus 201 L~~~Y~~d~lWfDg~~~~-----------------------~~~~~~~-~~~~~~i~~~qp~~ii~~r 244 (346)
T PF01120_consen 201 LLTRYKPDILWFDGGWPD-----------------------PDEDWDS-AELYNWIRKLQPDVIINNR 244 (346)
T ss_dssp HHHCSTESEEEEESTTSC-----------------------CCTHHHH-HHHHHHHHHHSTTSEEECC
T ss_pred HHhCCCcceEEecCCCCc-----------------------cccccCH-HHHHHHHHHhCCeEEEecc
Confidence 999999999999988521 0112222 6677888889998887653
No 217
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=55.91 E-value=90 Score=37.08 Aligned_cols=78 Identities=19% Similarity=0.264 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEee-ccccccCCcCCcccCCCCCCcCcccCCCCCCCCCC--CccCCCCCHHHHHHHHHH
Q psy9001 318 TPEQLKYLVDECHKAGLYVLLDVV-HSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWD--SRLFNYSEIEVLRFLLSN 394 (1351)
Q Consensus 318 ~~~efk~LV~~~H~~GI~VILDvV-~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~--~~~ln~~~p~v~~~l~~~ 394 (1351)
|.+|+|+||+-|.++||.||-.+- +.|+..-.. +...+......+ .....|+ .+.||..+|++.+++.+.
T Consensus 66 T~~di~elv~yA~~rgI~vIPEId~PGH~~a~~~-~ypel~~~~~~~------~~~~~~~~~~~~l~~~~p~t~~f~~~l 138 (311)
T cd06570 66 TQEQIREVVAYARDRGIRVVPEIDVPGHASAIAV-AYPELASGPGPY------VIERGWGVFEPLLDPTNEETYTFLDNL 138 (311)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeecCccchHHHHH-hCHHhccCCCcc------ccccccccCCCccCCCChhHHHHHHHH
Confidence 789999999999999999998874 788764210 000010000000 0011222 246999999999999999
Q ss_pred HHHHHHHc
Q psy9001 395 LRWYLDEY 402 (1351)
Q Consensus 395 l~~W~~e~ 402 (1351)
+.-.+.-|
T Consensus 139 ~~E~~~lF 146 (311)
T cd06570 139 FGEMAELF 146 (311)
T ss_pred HHHHHHhC
Confidence 98888744
No 218
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=55.89 E-value=53 Score=43.20 Aligned_cols=88 Identities=14% Similarity=0.123 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHcCC--EEEEEeeccc--cccCCcCCc------ccCCCCCCcCcccCCCCCCCCCCCccCCCCCH--HHH
Q psy9001 321 QLKYLVDECHKAGL--YVLLDVVHSH--ASKNVLDGL------NEFDGTQACFFHDGPRGTHPLWDSRLFNYSEI--EVL 388 (1351)
Q Consensus 321 efk~LV~~~H~~GI--~VILDvV~NH--~~~~~~~~~------~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p--~v~ 388 (1351)
+++++-+.|+++|| ++|-|+-+-= -+.+ -|.. ..--|-.+.+|... | .+|+.+.+|...- .=-
T Consensus 356 Ql~~~~~~A~~~Gm~igL~gDLpvgv~~dsaD-vWa~~~~F~l~~~~GaPPD~fs~~--G--Q~WG~P~y~w~~l~~~gy 430 (695)
T PRK11052 356 QFAACWQLSQQLGMPIGLYRDLAVGVAEGGAE-TWCDRELYCLKASVGAPPDILGPL--G--QNWGLPPMDPHVLQARAY 430 (695)
T ss_pred HHHHHHHHHHHCCCceeEEEeeeceECCCcHH-HhCCHHHhcCCCcCCCCCCcCCcc--c--ccCCCcCcCHHHHHhcCc
Confidence 57788889999999 6799998632 2222 2221 11134445566432 1 3577655554321 112
Q ss_pred HHHHHHHHHHHHHcCCCcccccccccc
Q psy9001 389 RFLLSNLRWYLDEYQFDGFRFDGVTSM 415 (1351)
Q Consensus 389 ~~l~~~l~~W~~e~~vDGfR~D~a~~~ 415 (1351)
+.+++.++.-++ +.|++|+|-+.-+
T Consensus 431 ~ww~~rlr~~~~--~~g~lRIDH~~Gl 455 (695)
T PRK11052 431 QPFIDLLRANMQ--HCGALRIDHVMSL 455 (695)
T ss_pred HHHHHHHHHHHH--hCCEEEecchhhh
Confidence 456666666666 6899999976554
No 219
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=55.41 E-value=1.4e+02 Score=36.07 Aligned_cols=106 Identities=19% Similarity=0.124 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCC-CHHHHHHHHHHHHH
Q psy9001 319 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYS-EIEVLRFLLSNLRW 397 (1351)
Q Consensus 319 ~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~-~p~v~~~l~~~l~~ 397 (1351)
.+=+++|+++|+++||++.+ -+.+. +-+. + .|.......... .....-. ...+.+++..-++-
T Consensus 137 rDiv~El~~A~rk~Glk~G~--Y~S~~-dw~~----------~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ql~E 200 (346)
T PF01120_consen 137 RDIVGELADACRKYGLKFGL--YYSPW-DWHH----------P-DYPPDEEGDENG--PADGPGNWQRYYNEYWLAQLRE 200 (346)
T ss_dssp S-HHHHHHHHHHHTT-EEEE--EEESS-SCCC----------T-TTTSSCHCHHCC----HCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCeEEE--Eecch-HhcC----------c-ccCCCccCCccc--ccccchhhHhHhhhhhHHHHHH
Confidence 37799999999999999987 22222 2110 0 000000000000 0000000 12245588889999
Q ss_pred HHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEEEE
Q psy9001 398 YLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIA 464 (1351)
Q Consensus 398 W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~ia 464 (1351)
.++.|.+|.+=||....- ..+.. ....+.+.+++..|++++..
T Consensus 201 L~~~Y~~d~lWfDg~~~~-----------------------~~~~~-~~~~~~~~i~~~qp~~ii~~ 243 (346)
T PF01120_consen 201 LLTRYKPDILWFDGGWPD-----------------------PDEDW-DSAELYNWIRKLQPDVIINN 243 (346)
T ss_dssp HHHCSTESEEEEESTTSC-----------------------CCTHH-HHHHHHHHHHHHSTTSEEEC
T ss_pred HHhCCCcceEEecCCCCc-----------------------ccccc-CHHHHHHHHHHhCCeEEEec
Confidence 999999999999975421 00111 23667788889999888754
No 220
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=55.11 E-value=25 Score=33.66 Aligned_cols=52 Identities=19% Similarity=0.471 Sum_probs=35.1
Q ss_pred EEEEEEEeecC---CCCc-cccceeecC-CCeEEEEcCCCC-CCCcccCcccEEEEEEEecCC
Q psy9001 74 MHVVCAAGDFN---NWNR-EEFAYKKLD-FGKWELVLPPNP-DGSCKLTHLSQVKLVVRNQHG 130 (1351)
Q Consensus 74 A~~V~LvGDFN---~Wd~-~~~~M~k~~-~GvW~~~ip~~~-~G~~~~~~g~~Y~y~i~~~~g 130 (1351)
-++|.|+|+.. +|+. ...+|...+ .+.|++.++-.. .+. --.|||.+...++
T Consensus 13 Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~W~~~v~~~~~~~~-----~~~yKy~~~~~~~ 70 (96)
T cd05467 13 GQSVYVVGSHPELGNWDPAKALRLNTSNSYPLWTGEIPLPAPEGQ-----VIEYKYVIVDDDG 70 (96)
T ss_pred CCEEEEEeCcHHhCCcChhcCccccCCCCCCcEEEEEEecCCCCC-----eEEEEEEEECCCC
Confidence 35788999764 8986 457898776 899998775221 121 2479999875543
No 221
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=55.03 E-value=49 Score=38.54 Aligned_cols=115 Identities=20% Similarity=0.183 Sum_probs=59.6
Q ss_pred CCHHHHH---HHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCC--CHHHHHHH
Q psy9001 1030 GTPEQLK---YLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYS--EIEVLRFL 1104 (1351)
Q Consensus 1030 Gt~edfK---~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~--np~Vr~~l 1104 (1351)
|.-.|++ ++-+.|..+||||++|+-|+-.-.+ ........-|.. +||+ ...|-.|-
T Consensus 98 gGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaD-----------------PakQ~kPkaW~~--l~fe~lk~avy~yT 158 (403)
T COG3867 98 GGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWAD-----------------PAKQKKPKAWEN--LNFEQLKKAVYSYT 158 (403)
T ss_pred CCcchHHHHHHHHHHHHhcCcEEEeeccchhhccC-----------------hhhcCCcHHhhh--cCHHHHHHHHHHHH
Confidence 4445555 4556788899999999855421111 001112223432 3443 34555666
Q ss_pred HHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhH-HHHHHHHHHHHHhhCCCeEE
Q psy9001 1105 LSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDA-LIYLMVANKFLHDKYPEIIT 1175 (1351)
Q Consensus 1105 id~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~-~~fl~~~~~~l~~~~Pd~il 1175 (1351)
..++....+| ||+ .|++..=-....|.-|+ +|... +-+- ...+++..++||+..|++.+
T Consensus 159 k~~l~~m~~e-Gi~---pdmVQVGNEtn~gflwp-~Ge~~-------~f~k~a~L~n~g~~avrev~p~ikv 218 (403)
T COG3867 159 KYVLTTMKKE-GIL---PDMVQVGNETNGGFLWP-DGEGR-------NFDKMAALLNAGIRAVREVSPTIKV 218 (403)
T ss_pred HHHHHHHHHc-CCC---ccceEeccccCCceecc-CCCCc-------ChHHHHHHHHHHhhhhhhcCCCceE
Confidence 6777777776 554 56654211111222111 12111 2222 33567788889999998654
No 222
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=54.61 E-value=89 Score=36.82 Aligned_cols=90 Identities=18% Similarity=0.188 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy9001 1032 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWY 1111 (1351)
Q Consensus 1032 ~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~yW 1111 (1351)
...++.-|++|+++|++||+=+ + |.....+.. ...-++.+.+++.-.
T Consensus 53 ~~~~~~~i~~lk~~G~kViiS~-----G-----------G~~g~~~~~-----------------~~~~~~~~~~a~~~~ 99 (294)
T cd06543 53 GGWIKSDIAALRAAGGDVIVSF-----G-----------GASGTPLAT-----------------SCTSADQLAAAYQKV 99 (294)
T ss_pred chhHHHHHHHHHHcCCeEEEEe-----c-----------CCCCCcccc-----------------CcccHHHHHHHHHHH
Confidence 5678889999999999999843 0 111011110 234566777777778
Q ss_pred HHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEE
Q psy9001 1112 LEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIIT 1175 (1351)
Q Consensus 1112 l~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~il 1175 (1351)
++.|++||+-||--... ..+.+++.-+..+.+.|++.+|+..+
T Consensus 100 i~~y~~dgiDfDiE~~~---------------------~~d~~~~~~~~~al~~Lq~~~p~l~v 142 (294)
T cd06543 100 IDAYGLTHLDFDIEGGA---------------------LTDTAAIDRRAQALALLQKEYPDLKI 142 (294)
T ss_pred HHHhCCCeEEEeccCCc---------------------cccchhHHHHHHHHHHHHHHCCCcEE
Confidence 89999999999965422 12344556666677788888887543
No 223
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=54.18 E-value=26 Score=34.29 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=33.7
Q ss_pred EEEEEEee---cCCCCc-cccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEec
Q psy9001 75 HVVCAAGD---FNNWNR-EEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQ 128 (1351)
Q Consensus 75 ~~V~LvGD---FN~Wd~-~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~ 128 (1351)
+.|.|+|+ +.+|+. ...+|...++..|++.+.-. .+ ....|||.+...
T Consensus 14 e~l~v~Gs~~~LG~W~~~~a~~m~~~~~~~W~~~v~lp-~~-----~~veYKY~i~~~ 65 (100)
T cd05817 14 EAVYISGNCNQLGNWNPSKAKRMQWNEGDLWTVDVGIP-ES-----VYIEYKYFVSNY 65 (100)
T ss_pred CEEEEEeCcHHHCCCCccccCcccCCCCCCEEEEEEEC-CC-----CcEEEEEEEEec
Confidence 57889997 678986 45789877778998776321 12 125899998753
No 224
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=53.32 E-value=32 Score=40.81 Aligned_cols=96 Identities=19% Similarity=0.263 Sum_probs=50.4
Q ss_pred HHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhC
Q psy9001 1037 YLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQ 1116 (1351)
Q Consensus 1037 ~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~yWl~eyg 1116 (1351)
..|++||++|.+|+-=+.+.+-... ..+..+ ...+..+ .-.+.+.|++.++| ||
T Consensus 46 ~widaAHrnGV~vLGTiife~~~~~--~~~~~l-------l~~~~~g-------------~~~~A~kLi~ia~~----yG 99 (311)
T PF03644_consen 46 GWIDAAHRNGVKVLGTIIFEWGGGA--EWCEEL-------LEKDEDG-------------SFPYADKLIEIAKY----YG 99 (311)
T ss_dssp HHHHHHHHTT--EEEEEEEEEE--H--HHHHHH-------T---TTS---------------HHHHHHHHHHHH----HT
T ss_pred hhHHHHHhcCceEEEEEEecCCchH--HHHHHH-------HcCCccc-------------ccHHHHHHHHHHHH----cC
Confidence 4789999999999987777332211 011100 0001111 12456777777766 79
Q ss_pred CCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEE
Q psy9001 1117 FDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIA 1177 (1351)
Q Consensus 1117 VDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIa 1177 (1351)
+||+=+--=..+.. ...-..-..|++.+++.+++ .|...++=
T Consensus 100 FDGw~iN~E~~~~~------------------~~~~~~l~~F~~~l~~~~~~-~~~~~v~W 141 (311)
T PF03644_consen 100 FDGWLINIETPLSG------------------PEDAENLIDFLKYLRKEAHE-NPGSEVIW 141 (311)
T ss_dssp --EEEEEEEESSTT------------------GGGHHHHHHHHHHHHHHHHH-T-T-EEEE
T ss_pred CCceEEEecccCCc------------------hhHHHHHHHHHHHHHHHhhc-CCCcEEEE
Confidence 99987754443210 00123457799999999999 88766654
No 225
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=53.31 E-value=22 Score=41.86 Aligned_cols=120 Identities=15% Similarity=0.131 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEe-ecccccCCccccCcCCCCCCCccccCCCCCCCCCC--CCCCCCCCCHHHHHHHHHH
Q psy9001 1031 TPEQLKYLVDECHKAGLYVLLDV-VHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW--DSRLFNYSEIEVLRFLLSN 1107 (1351)
Q Consensus 1031 t~edfK~LV~~aH~~GI~VILDV-V~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w--~~~dlN~~np~Vr~~lid~ 1107 (1351)
|.+|+++||+-|.++||+||-.+ ++.|+..--. ...... . .++- + ..+ ....||..+|++.+++.+.
T Consensus 70 T~~di~elv~yA~~rgI~viPEiD~PGH~~a~~~-~~p~l~-~-~~~~-----~--~~~~~~~~~l~~~~~~t~~fl~~l 139 (303)
T cd02742 70 TYAQLKDIIEYAAARGIEVIPEIDMPGHSTAFVK-SFPKLL-T-ECYA-----G--LKLRDVFDPLDPTLPKGYDFLDDL 139 (303)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccchHHHHHHHH-hCHHhc-c-Cccc-----c--CCCCCCCCccCCCCccHHHHHHHH
Confidence 78999999999999999999887 4566654110 000000 0 0000 0 111 1246999999999999999
Q ss_pred HHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEc
Q psy9001 1108 LRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAE 1178 (1351)
Q Consensus 1108 l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE 1178 (1351)
++-+++-|. ... -|.|..+-... ......-..|++.+.+.|++.....++=+|
T Consensus 140 ~~e~~~lf~--------~~~---iHiGgDE~~~~-------~~~~~l~~~f~~~~~~~v~~~g~~~~~W~d 192 (303)
T cd02742 140 FGEIAELFP--------DRY---LHIGGDEAHFK-------QDRKHLMSQFIQRVLDIVKKKGKKVIVWQD 192 (303)
T ss_pred HHHHHHhCC--------CCe---EEecceecCCC-------CCHHHHHHHHHHHHHHHHHHcCCeEEEecc
Confidence 999988531 111 12232222110 011122356788888888877655444334
No 226
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=51.69 E-value=1.2e+02 Score=36.59 Aligned_cols=78 Identities=18% Similarity=0.191 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEee-ccccccCCcCCcccCC--CCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHH
Q psy9001 318 TPEQLKYLVDECHKAGLYVLLDVV-HSHASKNVLDGLNEFD--GTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSN 394 (1351)
Q Consensus 318 ~~~efk~LV~~~H~~GI~VILDvV-~NH~~~~~~~~~~~f~--g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~ 394 (1351)
|.+|+|++|+-|.++||+||-.+- +.|+..--. ....+. +....+... .......||..+|++.+++.+.
T Consensus 84 T~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~-~~pel~~~~~~~~~~~~------~~~~~~~L~~~~~~t~~f~~~l 156 (357)
T cd06563 84 TQEEIREIVAYAAERGITVIPEIDMPGHALAALA-AYPELGCTGGPGSVVSV------QGVVSNVLCPGKPETYTFLEDV 156 (357)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCchhHHHHHH-hCccccCCCCCCccccc------cCcCCCccCCCChhHHHHHHHH
Confidence 689999999999999999998874 678753210 000011 000000000 0011357999999999999999
Q ss_pred HHHHHHHc
Q psy9001 395 LRWYLDEY 402 (1351)
Q Consensus 395 l~~W~~e~ 402 (1351)
+.-.++-|
T Consensus 157 l~E~~~lF 164 (357)
T cd06563 157 LDEVAELF 164 (357)
T ss_pred HHHHHHhC
Confidence 99888754
No 227
>KOG1065|consensus
Probab=50.02 E-value=39 Score=44.42 Aligned_cols=92 Identities=23% Similarity=0.451 Sum_probs=55.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEeecc-cccCCccccCcCCC-CCCCccccCCCCCCC----CCC--CCCCCCCCCHH
Q psy9001 1028 LFGTPEQLKYLVDECHKAGLYVLLDVVHS-HASKNVLDGLNEFD-GTQACFFHDGPRGTH----PLW--DSRLFNYSEIE 1099 (1351)
Q Consensus 1028 ~yGt~edfK~LV~~aH~~GI~VILDVV~N-Hts~~~~~~l~~~d-g~~~~yf~~~~~g~~----~~w--~~~dlN~~np~ 1099 (1351)
+|++ |+.+|+.+|++|+|+|+=+-++ ++... ...++ +.....+..+..|.. ..| ...-.|+.||.
T Consensus 349 ~fp~---~~~fv~~Lh~~G~kyvliidP~is~~~~----y~~y~~g~~~~v~I~~~~g~~~~lg~vwP~~~~fpDftnp~ 421 (805)
T KOG1065|consen 349 WFPD---LKDFVDDLHARGFKYVLIIDPFISTNSS----YGPYDRGVAKDVLIKNREGSPKMLGEVWPGSTAFPDFTNPA 421 (805)
T ss_pred cCcc---hHHHHHHHHhCCCeEEEEeCCccccCcc----chhhhhhhhhceeeecccCchhhhcccCCCcccccccCCch
Confidence 4666 9999999999999988755422 11111 00000 111111111111211 122 12247899998
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEcCcc
Q psy9001 1100 VLRFLLSNLRWYLEEYQFDGFRFDGVT 1126 (1351)
Q Consensus 1100 Vr~~lid~l~yWl~eygVDGFRfD~a~ 1126 (1351)
+.....+.++-.-+++++|||=+|+-.
T Consensus 422 ~~~Ww~~~~~~fh~~vp~dg~wiDmnE 448 (805)
T KOG1065|consen 422 VVEWWLDELKRFHDEVPFDGFWIDMNE 448 (805)
T ss_pred HHHHHHHHHHhhcccCCccceEEECCC
Confidence 888888888777778899999999854
No 228
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=49.94 E-value=51 Score=39.71 Aligned_cols=79 Identities=18% Similarity=0.186 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEe-ecccccCCc--cccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q psy9001 1031 TPEQLKYLVDECHKAGLYVLLDV-VHSHASKNV--LDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSN 1107 (1351)
Q Consensus 1031 t~edfK~LV~~aH~~GI~VILDV-V~NHts~~~--~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~ 1107 (1351)
|.+|+|++|+-|.++||.||-.+ ++.|+..-. ...+.. .+. ..+... . ..-....||..+|++.+++.+.
T Consensus 68 T~~di~eiv~yA~~rgI~vIPEID~PGH~~a~~~~~p~l~~-~~~--~~~~~~--~--~~~~~~~L~~~~~~t~~fl~~v 140 (348)
T cd06562 68 TPEDVKEIVEYARLRGIRVIPEIDTPGHTGSWGQGYPELLT-GCY--AVWRKY--C--PEPPCGQLNPTNPKTYDFLKTL 140 (348)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccCchhhHHHHHhChhhhC-CCC--cccccc--c--cCCCCccccCCChhHHHHHHHH
Confidence 89999999999999999999887 456665421 000100 000 000000 0 0001236999999999999999
Q ss_pred HHHHHHHhC
Q psy9001 1108 LRWYLEEYQ 1116 (1351)
Q Consensus 1108 l~yWl~eyg 1116 (1351)
+.-.++-|.
T Consensus 141 l~E~~~lF~ 149 (348)
T cd06562 141 FKEVSELFP 149 (348)
T ss_pred HHHHHHhcC
Confidence 999998643
No 229
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=49.57 E-value=1.1e+02 Score=35.62 Aligned_cols=83 Identities=22% Similarity=0.362 Sum_probs=59.5
Q ss_pred CCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHH
Q psy9001 1085 HPLWD-SRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVAN 1163 (1351)
Q Consensus 1085 ~~~w~-~~dlN~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~ 1163 (1351)
.++|- ...+.|-.|+=+..|.+-+.-.++. |+||.=+|.+..--|.. +....-+.+....-..|+.++.
T Consensus 108 dP~W~Gny~VkYW~~eWkdii~~~l~rL~d~-GfdGvyLD~VD~y~Y~~---------~~~~~~~~~~~k~m~~~i~~i~ 177 (300)
T COG2342 108 DPEWPGNYAVKYWEPEWKDIIRSYLDRLIDQ-GFDGVYLDVVDAYWYVE---------WNDRETGVNAAKKMVKFIAAIA 177 (300)
T ss_pred CCCCCCCceeeccCHHHHHHHHHHHHHHHHc-cCceEEEeeechHHHHH---------HhcccccccHHHHHHHHHHHHH
Confidence 45673 4478899999999999999998886 99999999997442210 0111112223455677899999
Q ss_pred HHHHhhCCCeEEEE
Q psy9001 1164 KFLHDKYPEIITIA 1177 (1351)
Q Consensus 1164 ~~l~~~~Pd~ilIa 1177 (1351)
..++..+|.+.+|=
T Consensus 178 ~~~ra~~~~~~Vi~ 191 (300)
T COG2342 178 EYARAANPLFRVIP 191 (300)
T ss_pred HHHHhcCCcEEEEe
Confidence 99999999976664
No 230
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=49.01 E-value=1.6e+02 Score=32.08 Aligned_cols=64 Identities=25% Similarity=0.258 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHc--CCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHH
Q psy9001 319 PEQLKYLVDECHKA--GLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLR 396 (1351)
Q Consensus 319 ~~efk~LV~~~H~~--GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~ 396 (1351)
.+.....+++++++ |++|++=+--.. .. .. + --..++..|+.+++++.
T Consensus 48 ~~~~~~~i~~l~~~~~g~kv~~sigg~~-~~--------------~~-----------~----~~~~~~~~~~~f~~~~~ 97 (210)
T cd00598 48 EEPLKGALEELASKKPGLKVLISIGGWT-DS--------------SP-----------F----TLASDPASRAAFANSLV 97 (210)
T ss_pred cHHHHHHHHHHHHhCCCCEEEEEEcCCC-CC--------------CC-----------c----hhhcCHHHHHHHHHHHH
Confidence 35566778888887 999996441000 00 00 0 12356788888999999
Q ss_pred HHHHHcCCCccccccc
Q psy9001 397 WYLDEYQFDGFRFDGV 412 (1351)
Q Consensus 397 ~W~~e~~vDGfR~D~a 412 (1351)
-+++++++||+-+|.-
T Consensus 98 ~~v~~~~~DGidiD~E 113 (210)
T cd00598 98 SFLKTYGFDGVDIDWE 113 (210)
T ss_pred HHHHHcCCCceEEeee
Confidence 9999999999999853
No 231
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=47.13 E-value=45 Score=39.59 Aligned_cols=78 Identities=22% Similarity=0.245 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEe-ecccccCCccccCcCCCCCCCccccCCCCCCCCCCC--CCCCCCCCHHHHHHHHHH
Q psy9001 1031 TPEQLKYLVDECHKAGLYVLLDV-VHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWD--SRLFNYSEIEVLRFLLSN 1107 (1351)
Q Consensus 1031 t~edfK~LV~~aH~~GI~VILDV-V~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~--~~dlN~~np~Vr~~lid~ 1107 (1351)
|.+|+|+||+-|.++||+||-.+ ++.|+..-- .+.-.+...... ......|+ .+.||..+|++.+++.+.
T Consensus 66 T~~di~elv~yA~~rgI~vIPEId~PGH~~a~~-~~ypel~~~~~~------~~~~~~~~~~~~~l~~~~p~t~~f~~~l 138 (311)
T cd06570 66 TQEQIREVVAYARDRGIRVVPEIDVPGHASAIA-VAYPELASGPGP------YVIERGWGVFEPLLDPTNEETYTFLDNL 138 (311)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeecCccchHHHH-HhCHHhccCCCc------cccccccccCCCccCCCChhHHHHHHHH
Confidence 89999999999999999999887 456665311 000000000000 00112232 236999999999999999
Q ss_pred HHHHHHHh
Q psy9001 1108 LRWYLEEY 1115 (1351)
Q Consensus 1108 l~yWl~ey 1115 (1351)
+.-.++-|
T Consensus 139 ~~E~~~lF 146 (311)
T cd06570 139 FGEMAELF 146 (311)
T ss_pred HHHHHHhC
Confidence 99888754
No 232
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=45.85 E-value=1.3e+02 Score=35.30 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEe
Q psy9001 1031 TPEQLKYLVDECHKAGLYVLLDV 1053 (1351)
Q Consensus 1031 t~edfK~LV~~aH~~GI~VILDV 1053 (1351)
.-.+|.+-|++|+++|+||+|=+
T Consensus 57 ~c~~~~~dI~~cq~~G~KVlLSI 79 (280)
T cd02877 57 NCPQLGADIKHCQSKGKKVLLSI 79 (280)
T ss_pred cchhHHHHHHHHHHCCCEEEEEc
Confidence 45689999999999999999964
No 233
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=45.20 E-value=66 Score=37.06 Aligned_cols=65 Identities=17% Similarity=0.131 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHH
Q psy9001 317 GTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLR 396 (1351)
Q Consensus 317 G~~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~ 396 (1351)
+...++.+=|++|++.|++|+|=+ ++ +.. + . | . .. .++++-|+-+++++.
T Consensus 56 ~~~~~~~~~i~~~~~~g~KVllSi-------GG-~~~----~---~-f-----------s--~~-a~~~~~r~~f~~s~~ 105 (256)
T cd06546 56 PRFTTLWTELAILQSSGVKVMGML-------GG-AAP----G---S-F-----------S--RL-DDDDEDFERYYGQLR 105 (256)
T ss_pred chhhHHHHHHHHHHhCCCEEEEEE-------CC-CCC----C---C-c-----------c--cc-cCCHHHHHHHHHHHH
Confidence 334466666778999999999732 10 000 0 0 0 0 01 134555666678888
Q ss_pred HHHHHcCCCcccccc
Q psy9001 397 WYLDEYQFDGFRFDG 411 (1351)
Q Consensus 397 ~W~~e~~vDGfR~D~ 411 (1351)
-++++|++||+-+|-
T Consensus 106 ~~~~~~~~DGiDiDw 120 (256)
T cd06546 106 DMIRRRGLDGLDLDV 120 (256)
T ss_pred HHHHHhCCCceEEee
Confidence 889999999998884
No 234
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=45.12 E-value=3.9e+02 Score=31.49 Aligned_cols=74 Identities=12% Similarity=0.090 Sum_probs=45.7
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCC----ccCchHHHHHHHHHHHHH
Q psy9001 379 LFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGL----NVDTDALIYLMVANKFLH 454 (1351)
Q Consensus 379 ~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~----~~~~~~~~f~~~~~~~v~ 454 (1351)
.|..-+|++|+.|.+.-.-...--.|||.=|- |...-.+|. ....... .....-+.|..++.+.++
T Consensus 112 RLSPf~p~~r~~I~~IYeDLA~y~~fdGILFh--------DDa~L~D~E--~~~~~~~~~~~~Kt~~Li~ft~eL~~~v~ 181 (294)
T PF14883_consen 112 RLSPFDPEARQIIKEIYEDLARYSKFDGILFH--------DDAVLSDFE--IAAIRQNPADRQKTRALIDFTMELAAAVR 181 (294)
T ss_pred ecCCCCHHHHHHHHHHHHHHHhhCCCCeEEEc--------CCccccchh--hhhhccChhhHHHHHHHHHHHHHHHHHHH
Confidence 46666899999999999998884599997551 111000110 0000000 001123579999999999
Q ss_pred hhCCCeEE
Q psy9001 455 DKYPEIIT 462 (1351)
Q Consensus 455 ~~~P~~~~ 462 (1351)
...|++.+
T Consensus 182 ~~rp~lkT 189 (294)
T PF14883_consen 182 RYRPDLKT 189 (294)
T ss_pred HhCccchh
Confidence 99998775
No 235
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=43.63 E-value=86 Score=36.46 Aligned_cols=84 Identities=23% Similarity=0.365 Sum_probs=57.1
Q ss_pred CCCCCCc-cCCCCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHH
Q psy9001 372 HPLWDSR-LFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVAN 450 (1351)
Q Consensus 372 ~~~w~~~-~ln~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~ 450 (1351)
.|+|-|+ ...|-+|+-++.+.+-+...++ .|+||.=+|.+..--|.. .....-+.+....-..|+..+.
T Consensus 108 dP~W~Gny~VkYW~~eWkdii~~~l~rL~d-~GfdGvyLD~VD~y~Y~~---------~~~~~~~~~~~k~m~~~i~~i~ 177 (300)
T COG2342 108 DPEWPGNYAVKYWEPEWKDIIRSYLDRLID-QGFDGVYLDVVDAYWYVE---------WNDRETGVNAAKKMVKFIAAIA 177 (300)
T ss_pred CCCCCCCceeeccCHHHHHHHHHHHHHHHH-ccCceEEEeeechHHHHH---------HhcccccccHHHHHHHHHHHHH
Confidence 3567653 5788899999999988888877 799999999887542110 0000011122233457889999
Q ss_pred HHHHhhCCCeEEEEE
Q psy9001 451 KFLHDKYPEIITIAE 465 (1351)
Q Consensus 451 ~~v~~~~P~~~~iaE 465 (1351)
+.+++.+|...+|-.
T Consensus 178 ~~~ra~~~~~~Vi~q 192 (300)
T COG2342 178 EYARAANPLFRVIPQ 192 (300)
T ss_pred HHHHhcCCcEEEEec
Confidence 999999999666643
No 236
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=43.18 E-value=35 Score=40.20 Aligned_cols=77 Identities=16% Similarity=0.100 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEee-ccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHH
Q psy9001 318 TPEQLKYLVDECHKAGLYVLLDVV-HSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLR 396 (1351)
Q Consensus 318 ~~~efk~LV~~~H~~GI~VILDvV-~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~ 396 (1351)
|.+|+++||+-|.++||.||-.+- +.|+..-....+ .+.. ..+- +....-....||..+|++.+++.+.+.
T Consensus 70 T~~di~elv~yA~~rgI~viPEiD~PGH~~a~~~~~p-~l~~--~~~~-----~~~~~~~~~~l~~~~~~t~~fl~~l~~ 141 (303)
T cd02742 70 TYAQLKDIIEYAAARGIEVIPEIDMPGHSTAFVKSFP-KLLT--ECYA-----GLKLRDVFDPLDPTLPKGYDFLDDLFG 141 (303)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccchHHHHHHHHhCH-Hhcc--Cccc-----cCCCCCCCCccCCCCccHHHHHHHHHH
Confidence 789999999999999999998874 788764210000 0000 0000 000000124689999999999999999
Q ss_pred HHHHHc
Q psy9001 397 WYLDEY 402 (1351)
Q Consensus 397 ~W~~e~ 402 (1351)
-.++-|
T Consensus 142 e~~~lf 147 (303)
T cd02742 142 EIAELF 147 (303)
T ss_pred HHHHhC
Confidence 998843
No 237
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=42.41 E-value=42 Score=39.96 Aligned_cols=122 Identities=15% Similarity=0.164 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEe-ecccccCCccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q psy9001 1031 TPEQLKYLVDECHKAGLYVLLDV-VHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLR 1109 (1351)
Q Consensus 1031 t~edfK~LV~~aH~~GI~VILDV-V~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~ 1109 (1351)
|.+|+|++|+-|.++||.||-.+ ++.|+..-- ... ..+..... ........||..+|++.+++.+.+.
T Consensus 80 T~~di~eiv~yA~~rgI~vIPEID~PGH~~a~~----~~~-----pel~~~~~--~~~~~~~~l~~~~~~t~~f~~~l~~ 148 (326)
T cd06564 80 TKEEFKELIAYAKDRGVNIIPEIDSPGHSLAFT----KAM-----PELGLKNP--FSKYDKDTLDISNPEAVKFVKALFD 148 (326)
T ss_pred cHHHHHHHHHHHHHcCCeEeccCCCcHHHHHHH----Hhh-----HHhcCCCc--ccCCCcccccCCCHHHHHHHHHHHH
Confidence 89999999999999999999876 345554311 000 00000000 1111234689999999999999999
Q ss_pred HHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEcc
Q psy9001 1110 WYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAED 1179 (1351)
Q Consensus 1110 yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~ 1179 (1351)
-.++-|.. ... +-|.|..+-... ......-..|++.+.+.|++.....++=.|.
T Consensus 149 E~~~~f~~------~~~---~~HiGgDE~~~~-------~~~~~~~~~f~~~~~~~v~~~gk~~~~W~d~ 202 (326)
T cd06564 149 EYLDGFNP------KSD---TVHIGADEYAGD-------AGYAEAFRAYVNDLAKYVKDKGKTPRVWGDG 202 (326)
T ss_pred HHHHhcCC------CCC---EEEecccccccc-------CccHHHHHHHHHHHHHHHHHcCCeEEEeCCc
Confidence 88876441 011 112232221110 1112223568899999998876555444443
No 238
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=41.03 E-value=86 Score=37.91 Aligned_cols=79 Identities=19% Similarity=0.168 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEe-ecccccCCccccCcCCCCCCC-ccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q psy9001 1031 TPEQLKYLVDECHKAGLYVLLDV-VHSHASKNVLDGLNEFDGTQA-CFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNL 1108 (1351)
Q Consensus 1031 t~edfK~LV~~aH~~GI~VILDV-V~NHts~~~~~~l~~~dg~~~-~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l 1108 (1351)
|.+|+|++|+-|.++||+||-.+ ++.|+..-- .+...+..... ..+.. ......+.||-.+|++.+++.+.+
T Consensus 84 T~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l-~~~pel~~~~~~~~~~~-----~~~~~~~~L~~~~~~t~~f~~~ll 157 (357)
T cd06563 84 TQEEIREIVAYAAERGITVIPEIDMPGHALAAL-AAYPELGCTGGPGSVVS-----VQGVVSNVLCPGKPETYTFLEDVL 157 (357)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCchhHHHHH-HhCccccCCCCCCcccc-----ccCcCCCccCCCChhHHHHHHHHH
Confidence 79999999999999999999887 346654311 00000100000 00000 001123469999999999999999
Q ss_pred HHHHHHh
Q psy9001 1109 RWYLEEY 1115 (1351)
Q Consensus 1109 ~yWl~ey 1115 (1351)
.-.++-|
T Consensus 158 ~E~~~lF 164 (357)
T cd06563 158 DEVAELF 164 (357)
T ss_pred HHHHHhC
Confidence 9988754
No 239
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=40.68 E-value=93 Score=30.53 Aligned_cols=58 Identities=16% Similarity=0.343 Sum_probs=38.3
Q ss_pred eeEEE-------EEEEEEEeec---CCCCcc-ccceeec----CCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCce
Q psy9001 69 GLLCF-------MHVVCAAGDF---NNWNRE-EFAYKKL----DFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHL 132 (1351)
Q Consensus 69 gv~F~-------A~~V~LvGDF---N~Wd~~-~~~M~k~----~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~ 132 (1351)
-|+|+ -++|.|+|+- .+|+.. ..+|... +.++|++.+.-. .+. .-.|||.+...+|..
T Consensus 8 ~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v~lp-~~~-----~veYKy~~~~~~~~~ 80 (106)
T cd05811 8 AVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTIPLP-AGT-----SFEYKFIRKESDGSV 80 (106)
T ss_pred EEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEEEeC-CCC-----cEEEEEEEEcCCCcE
Confidence 46776 4678999964 579864 5788653 358899887432 221 258999887655543
No 240
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=40.61 E-value=1.4e+02 Score=36.63 Aligned_cols=97 Identities=21% Similarity=0.110 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHH---HHHH
Q psy9001 1032 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFL---LSNL 1108 (1351)
Q Consensus 1032 ~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~l---id~l 1108 (1351)
.+=+++|+++|+++||++-+ | |...+ +. ++.|-.. +.........+.-.+|+ ..-+
T Consensus 127 rDiv~el~~A~rk~Glk~G~---Y-~S~~D---W~------~p~y~~~--------~~~~~~~~~~~~~~~y~~~~~~Ql 185 (384)
T smart00812 127 RDLVGELADAVRKRGLKFGL---Y-HSLFD---WF------NPLYAGP--------TSSDEDPDNWPRFQEFVDDWLPQL 185 (384)
T ss_pred cchHHHHHHHHHHcCCeEEE---E-cCHHH---hC------CCccccc--------cccccccccchhHHHHHHHHHHHH
Confidence 47799999999999999998 2 22211 11 1111100 00001122345567777 8888
Q ss_pred HHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCe
Q psy9001 1109 RWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEI 1173 (1351)
Q Consensus 1109 ~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ 1173 (1351)
+=.++.||-|.+=||....- .... --+.++.+.+++..|++
T Consensus 186 ~ELit~Ygpd~lWfD~~~~~-----------------------~~~~-~~~~~l~~~~~~~qP~~ 226 (384)
T smart00812 186 RELVTRYKPDLLWFDGGWEA-----------------------PDDY-WRSKEFLAWLYNLSPVK 226 (384)
T ss_pred HHHHhcCCCceEEEeCCCCC-----------------------ccch-hcHHHHHHHHHHhCCCC
Confidence 88999999999999976311 0001 12356777888889987
No 241
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=39.59 E-value=53 Score=43.31 Aligned_cols=88 Identities=15% Similarity=0.279 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccccCCcccc-------CcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHH
Q psy9001 1032 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG-------LNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFL 1104 (1351)
Q Consensus 1032 ~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~-------l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~l 1104 (1351)
-.+++++-+.|+++||.++.|+.+-=......-| +..-.|.++++|... -.+|+...+|+.. .+
T Consensus 273 ~~Q~~~~~~yA~~~GI~L~GDLPIgVa~dSaDvWa~p~lF~ld~~aGAPPD~FS~~----GQnWG~P~YnW~~---l~-- 343 (745)
T PLN03236 273 DRQLRRAAAHAAAKGVILKGDLPIGVDKASVDTWMHPKLFRMDTSTGAPPDAFDAN----GQNWGFPTYDWEE---MA-- 343 (745)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeeceeCCCcHHHhcCHHHhcCCCCcCCCCCCCCcc----cCcCCCCCcCHHH---HH--
Confidence 4789999999999999999999875322221111 122346667777432 2357665555431 11
Q ss_pred HHHHHHHHHHh-----CCCeEEEcCcccc
Q psy9001 1105 LSNLRWYLEEY-----QFDGFRFDGVTSM 1128 (1351)
Q Consensus 1105 id~l~yWl~ey-----gVDGFRfD~a~~m 1128 (1351)
.+...||.+.+ .+|++|+|-+.-+
T Consensus 344 ~dgY~WWr~Rlr~~~~~~dalRIDH~~Gf 372 (745)
T PLN03236 344 EDDYAWWRARMQHLEQFFSAIRIDHILGF 372 (745)
T ss_pred hcCcHHHHHHHHHHHHhCCeEEeechhhh
Confidence 23344554443 4699999987654
No 242
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=38.98 E-value=1.6e+02 Score=34.83 Aligned_cols=90 Identities=19% Similarity=0.176 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHH
Q psy9001 319 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWY 398 (1351)
Q Consensus 319 ~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~~W 398 (1351)
...+..-|++|+++|++||+= -. |....++. . ...-++.+.+++.-.
T Consensus 53 ~~~~~~~i~~lk~~G~kViiS-------~G---------G~~g~~~~----------------~-~~~~~~~~~~a~~~~ 99 (294)
T cd06543 53 GGWIKSDIAALRAAGGDVIVS-------FG---------GASGTPLA----------------T-SCTSADQLAAAYQKV 99 (294)
T ss_pred chhHHHHHHHHHHcCCeEEEE-------ec---------CCCCCccc----------------c-CcccHHHHHHHHHHH
Confidence 456788899999999999971 11 11000110 0 223356677777778
Q ss_pred HHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCeEE
Q psy9001 399 LDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIIT 462 (1351)
Q Consensus 399 ~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~~~ 462 (1351)
++.|++||+-||.-... ..+..++..+..+.+.|++.+|+..+
T Consensus 100 i~~y~~dgiDfDiE~~~---------------------~~d~~~~~~~~~al~~Lq~~~p~l~v 142 (294)
T cd06543 100 IDAYGLTHLDFDIEGGA---------------------LTDTAAIDRRAQALALLQKEYPDLKI 142 (294)
T ss_pred HHHhCCCeEEEeccCCc---------------------cccchhHHHHHHHHHHHHHHCCCcEE
Confidence 89999999999853211 11223344455556677788887543
No 243
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=38.98 E-value=1.5e+02 Score=35.00 Aligned_cols=125 Identities=17% Similarity=0.128 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEee-cccccCCccccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q psy9001 1031 TPEQLKYLVDECHKAGLYVLLDVV-HSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLR 1109 (1351)
Q Consensus 1031 t~edfK~LV~~aH~~GI~VILDVV-~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~ 1109 (1351)
|.+|++++++-|.++||.||-.+- +.|+.. +.... .|-...+... ....||-.+|++.+++.+.++
T Consensus 58 T~~ei~ei~~yA~~~gI~vIPeid~pGH~~~-----~l~~~----~~~~l~~~~~----~~~~l~~~~~~t~~fi~~li~ 124 (301)
T cd06565 58 TKEEIREIDDYAAELGIEVIPLIQTLGHLEF-----ILKHP----EFRHLREVDD----PPQTLCPGEPKTYDFIEEMIR 124 (301)
T ss_pred CHHHHHHHHHHHHHcCCEEEecCCCHHHHHH-----HHhCc----ccccccccCC----CCCccCCCChhHHHHHHHHHH
Confidence 799999999999999999997652 344322 11110 1100000000 123699999999999999999
Q ss_pred HHHHHhCCCeEEEcCcccccccCCCCCCCCC---CCcccccCC-cCChhHHHHHHHHHHHHHhhCCCeEEEEcc
Q psy9001 1110 WYLEEYQFDGFRFDGVTSMLYHNHGCGEGFS---GHYDEYFGL-NVDTDALIYLMVANKFLHDKYPEIITIAED 1179 (1351)
Q Consensus 1110 yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~---~~~~~~~g~-~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~ 1179 (1351)
-.++-+.- ..+ |.|..+.+. +.+....+. ....--..|++.+.+.+++..+..++=+|.
T Consensus 125 ev~~~f~s--------~~~---HIG~DE~~~~g~~~~~~~~~~~~~~~l~~~~~~~v~~~v~~~g~~~~~W~D~ 187 (301)
T cd06565 125 QVLELHPS--------KYI---HIGMDEAYDLGRGRSLRKHGNLGRGELYLEHLKKVLKIIKKRGPKPMMWDDM 187 (301)
T ss_pred HHHHhCCC--------CeE---EECCCcccccCCCHHHHHhcCCCHHHHHHHHHHHHHHHHHHcCCEEEEEhHH
Confidence 99886431 111 223222221 000000011 112224678889999999888866554443
No 244
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=37.38 E-value=1e+02 Score=36.97 Aligned_cols=121 Identities=15% Similarity=0.135 Sum_probs=68.4
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEee-cccccCCcc--ccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q psy9001 1031 TPEQLKYLVDECHKAGLYVLLDVV-HSHASKNVL--DGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSN 1107 (1351)
Q Consensus 1031 t~edfK~LV~~aH~~GI~VILDVV-~NHts~~~~--~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~ 1107 (1351)
|.+|+|+||+-|.++||.||-.+- +.|+..--. ..+.. .+.....+.. .......||..+|++.+++.+.
T Consensus 73 T~~di~elv~yA~~rgI~vIPEiD~PGH~~a~~~~~p~l~~-~~~~~~~~~~------~~~~~~~l~~~~~~t~~fl~~v 145 (329)
T cd06568 73 TQEDYKDIVAYAAERHITVVPEIDMPGHTNAALAAYPELNC-DGKAKPLYTG------IEVGFSSLDVDKPTTYEFVDDV 145 (329)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCcHHHHHHHHhChhhcc-CCCCCccccc------cCCCCcccCCCCHHHHHHHHHH
Confidence 799999999999999999998873 455543110 00110 0000000000 0012346999999999999999
Q ss_pred HHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCCeEEEEc
Q psy9001 1108 LRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAE 1178 (1351)
Q Consensus 1108 l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd~ilIaE 1178 (1351)
+.-.++-|- . . +-|.|..+- +... ...-..|++.+.+.|++.....++=.|
T Consensus 146 ~~E~~~~f~-------~-~---~iHiGgDE~--------~~~~-~~~~~~f~~~~~~~v~~~Gk~~~~W~d 196 (329)
T cd06568 146 FRELAALTP-------G-P---YIHIGGDEA--------HSTP-HDDYAYFVNRVRAIVAKYGKTPVGWQE 196 (329)
T ss_pred HHHHHHhCC-------C-C---eEEEecccC--------CCCc-hHHHHHHHHHHHHHHHHCCCeEEEECc
Confidence 888876421 1 1 112232221 1111 122356888888888877654443333
No 245
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=36.17 E-value=70 Score=30.69 Aligned_cols=46 Identities=24% Similarity=0.478 Sum_probs=28.9
Q ss_pred EEEEEEEeecCCCCcc-ccceeecC----CCeEEEEc--CCCCCCCcccCcccEEEEEEEec
Q psy9001 74 MHVVCAAGDFNNWNRE-EFAYKKLD----FGKWELVL--PPNPDGSCKLTHLSQVKLVVRNQ 128 (1351)
Q Consensus 74 A~~V~LvGDFN~Wd~~-~~~M~k~~----~GvW~~~i--p~~~~G~~~~~~g~~Y~y~i~~~ 128 (1351)
|.+|.+.+-||.|... .+.|++.. .|.|++.| |... ..-.|.+.+.
T Consensus 18 ~~~v~~~~G~n~W~~~~~~~m~~~~~~~~~~~~~~tv~vP~~a---------~~~dfvF~dg 70 (87)
T PF03423_consen 18 APNVHLHGGFNRWTHVPGFGMTKMCVPDEGGWWKATVDVPEDA---------YVMDFVFNDG 70 (87)
T ss_dssp S-EEEEEETTS-B-SSS-EE-EEESS---TTEEEEEEE--TTT---------SEEEEEEE-S
T ss_pred CCcEEEEecCCCCCcCCCCCcceeeeeecCCEEEEEEEEcCCc---------eEEEEEEcCC
Confidence 7889999999999754 57888754 79999998 4332 3566666644
No 246
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=36.10 E-value=1.8e+02 Score=34.30 Aligned_cols=73 Identities=16% Similarity=0.134 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEee-ccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHH
Q psy9001 318 TPEQLKYLVDECHKAGLYVLLDVV-HSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLR 396 (1351)
Q Consensus 318 ~~~efk~LV~~~H~~GI~VILDvV-~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~ 396 (1351)
|.+|++++++-|.++||.||=.+- +.|+..-- .. +.|-...+.... ...+|..+|++.+++.+.+.
T Consensus 58 T~~ei~ei~~yA~~~gI~vIPeid~pGH~~~~l-----~~----~~~~~l~~~~~~----~~~l~~~~~~t~~fi~~li~ 124 (301)
T cd06565 58 TKEEIREIDDYAAELGIEVIPLIQTLGHLEFIL-----KH----PEFRHLREVDDP----PQTLCPGEPKTYDFIEEMIR 124 (301)
T ss_pred CHHHHHHHHHHHHHcCCEEEecCCCHHHHHHHH-----hC----cccccccccCCC----CCccCCCChhHHHHHHHHHH
Confidence 689999999999999999986542 56654310 00 011000000000 24689999999999999999
Q ss_pred HHHHHcC
Q psy9001 397 WYLDEYQ 403 (1351)
Q Consensus 397 ~W~~e~~ 403 (1351)
-.++-|.
T Consensus 125 ev~~~f~ 131 (301)
T cd06565 125 QVLELHP 131 (301)
T ss_pred HHHHhCC
Confidence 9988543
No 247
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=35.94 E-value=57 Score=39.54 Aligned_cols=77 Identities=16% Similarity=0.138 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHH
Q psy9001 1033 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWD-SRLFNYSEIEVLRFLLSNLRWY 1111 (1351)
Q Consensus 1033 edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~-~~dlN~~np~Vr~~lid~l~yW 1111 (1351)
+.|.++|+.|+++||+|||-+. .++.+ .++..- .+.--..+..|....++ ...+++.+|.+|+++...++-.
T Consensus 47 ~~lD~~l~~a~~~Gi~viL~~~-~~~~P---~Wl~~~---~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l 119 (374)
T PF02449_consen 47 SWLDRVLDLAAKHGIKVILGTP-TAAPP---AWLYDK---YPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRAL 119 (374)
T ss_dssp HHHHHHHHHHHCTT-EEEEEEC-TTTS----HHHHCC---SGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCeEEEEec-ccccc---cchhhh---cccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHH
Confidence 5588999999999999999775 22222 122110 00111111222222222 2246788999999999988888
Q ss_pred HHHhC
Q psy9001 1112 LEEYQ 1116 (1351)
Q Consensus 1112 l~eyg 1116 (1351)
++.|+
T Consensus 120 ~~~y~ 124 (374)
T PF02449_consen 120 AERYG 124 (374)
T ss_dssp HHHHT
T ss_pred Hhhcc
Confidence 88776
No 248
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=35.86 E-value=3e+02 Score=34.44 Aligned_cols=84 Identities=10% Similarity=0.125 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEee-ccccccCCc---CCcccC--CCCC---CcCcccCCC--CCC---CCCCCccCCCC
Q psy9001 318 TPEQLKYLVDECHKAGLYVLLDVV-HSHASKNVL---DGLNEF--DGTQ---ACFFHDGPR--GTH---PLWDSRLFNYS 383 (1351)
Q Consensus 318 ~~~efk~LV~~~H~~GI~VILDvV-~NH~~~~~~---~~~~~f--~g~~---~~yy~~~~~--~~~---~~w~~~~ln~~ 383 (1351)
|.+|+|+||+-|+++||.||-.+- +.|+..--. .....+ .|.. ..|-..++. ..+ ..|....||-.
T Consensus 95 T~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~a~~~~yp~l~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~~L~p~ 174 (445)
T cd06569 95 SRADYIEILKYAKARHIEVIPEIDMPGHARAAIKAMEARYRKLMAAGKPAEAEEYRLSDPADTSQYLSVQFYTDNVINPC 174 (445)
T ss_pred CHHHHHHHHHHHHHcCCEEEEccCCchhHHHHHHhhhccchhhhccCCccccccccccCcccccccccccccccccccCC
Confidence 789999999999999999998874 788764200 000001 1110 011111110 011 11334679999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q psy9001 384 EIEVLRFLLSNLRWYLDE 401 (1351)
Q Consensus 384 ~p~v~~~l~~~l~~W~~e 401 (1351)
+|++.+|+.+.+.-.++-
T Consensus 175 ~~~ty~fl~~vl~Ev~~l 192 (445)
T cd06569 175 MPSTYRFVDKVIDEIARM 192 (445)
T ss_pred chhHHHHHHHHHHHHHHH
Confidence 999999999999888873
No 249
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=35.83 E-value=88 Score=30.13 Aligned_cols=46 Identities=20% Similarity=0.434 Sum_probs=31.3
Q ss_pred EEEEEEee---cCCCCccccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEe
Q psy9001 75 HVVCAAGD---FNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRN 127 (1351)
Q Consensus 75 ~~V~LvGD---FN~Wd~~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~ 127 (1351)
+.|.|+|+ +-+|+. ..+|...+.+.|++.+. ++.+. .-.|||.+..
T Consensus 16 e~l~v~G~~~~LG~W~~-~~~l~~~~~~~W~~~v~-lp~~~-----~ieYky~~~~ 64 (95)
T cd05813 16 QLVAVTGDHEELGSWHS-YIPLQYVKDGFWSASVS-LPVDT-----HVEWKFVLVE 64 (95)
T ss_pred eEEEEEcChHHHCCCCc-cccCcCCCCCCEEEEEE-ecCCC-----cEEEEEEEEc
Confidence 45678885 458986 68998777889987763 22221 2589998863
No 250
>PLN02950 4-alpha-glucanotransferase
Probab=35.81 E-value=67 Score=43.55 Aligned_cols=88 Identities=20% Similarity=0.321 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHcCCEEEEEeecc--ccccCCcCCc-ccC-----CCCCCcCcccCCCCCCCCCCCccCCCCC--HHHHHH
Q psy9001 321 QLKYLVDECHKAGLYVLLDVVHS--HASKNVLDGL-NEF-----DGTQACFFHDGPRGTHPLWDSRLFNYSE--IEVLRF 390 (1351)
Q Consensus 321 efk~LV~~~H~~GI~VILDvV~N--H~~~~~~~~~-~~f-----~g~~~~yy~~~~~~~~~~w~~~~ln~~~--p~v~~~ 390 (1351)
+++++.+.|+++||+++-|+.+. +-+.+ -|.. ..| .|..+.+|... | .+|+.+.+|+.. ..--+.
T Consensus 462 Ql~~~~~yA~~~Gi~L~GDLpigV~~dSaD-vWa~p~lF~l~~~aGaPPD~Fs~~--G--Q~WG~P~ynw~~l~~~gy~w 536 (909)
T PLN02950 462 QLSEAAEYARKKGVVLKGDLPIGVDRNSVD-TWVYPNLFRMNTSTGAPPDYFDKN--G--QNWGFPTYNWEEMSKDNYAW 536 (909)
T ss_pred HHHHHHHHHHHCCCEEEEEeeceeCCCcHH-HhcCHHHhcCCCccCCCCCcCCcc--c--ccCCCCCcCHHHHHhcCcHH
Confidence 57788899999999999999864 33332 1221 111 35555666432 2 367766666642 122345
Q ss_pred HHHHHHHHHHHcCCCcccccccccc
Q psy9001 391 LLSNLRWYLDEYQFDGFRFDGVTSM 415 (1351)
Q Consensus 391 l~~~l~~W~~e~~vDGfR~D~a~~~ 415 (1351)
+++-++.-++ ..|++|+|-+--+
T Consensus 537 w~~Rlr~~~~--~~d~lRIDH~~Gf 559 (909)
T PLN02950 537 WRARLTQMAK--YFTAYRIDHILGF 559 (909)
T ss_pred HHHHHHHHHH--hCCEEEEecchhh
Confidence 6666766666 7899999965543
No 251
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=35.80 E-value=55 Score=40.26 Aligned_cols=21 Identities=33% Similarity=0.552 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHcCCEEEEEee
Q psy9001 321 QLKYLVDECHKAGLYVLLDVV 341 (1351)
Q Consensus 321 efk~LV~~~H~~GI~VILDvV 341 (1351)
=+.+.|+.|.++||+|+||+.
T Consensus 117 ~ld~~I~~a~~~gi~V~iD~H 137 (407)
T COG2730 117 ILDEAINWAKKLGIYVLIDLH 137 (407)
T ss_pred HHHHHHHHHHhcCeeEEEEec
Confidence 566779999999999999973
No 252
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=35.52 E-value=3.7e+02 Score=32.19 Aligned_cols=131 Identities=15% Similarity=0.188 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcC-CCCCCCccccCCCCCCCCCCCCCCCCCCCHH---HHHHHHH
Q psy9001 1031 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNE-FDGTQACFFHDGPRGTHPLWDSRLFNYSEIE---VLRFLLS 1106 (1351)
Q Consensus 1031 t~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~-~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~---Vr~~lid 1106 (1351)
-.+.||+|++++|+.|-++++-+ +|.+......... .-+......... ....+. ..-..+..+ +.+.+.+
T Consensus 80 ~i~~~~~l~~~vh~~G~~~~~Ql--~h~G~~~~~~~~~~~~~ps~~~~~~~---~~~~~~-~p~~mt~~eI~~~i~~~~~ 153 (338)
T cd04733 80 DLEAFREWAAAAKANGALIWAQL--NHPGRQSPAGLNQNPVAPSVALDPGG---LGKLFG-KPRAMTEEEIEDVIDRFAH 153 (338)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEc--cCCCcCCCccCCCCCcCCCCCcCccc---ccccCC-CCCcCCHHHHHHHHHHHHH
Confidence 37889999999999999999886 5766543111100 000000000000 000000 001112222 3333445
Q ss_pred HHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCC
Q psy9001 1107 NLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYP 1171 (1351)
Q Consensus 1107 ~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~P 1171 (1351)
+.+. +.+.|+||.-+-++..-+-.++- .+.+-.-...||+. -..-+.|..++.++|++.-+
T Consensus 154 aA~r-a~~aGfDgVeih~a~gyLl~qFl--sp~~N~R~D~yGGs-lenR~rf~~EiI~aIR~avG 214 (338)
T cd04733 154 AARL-AQEAGFDGVQIHAAHGYLLSQFL--SPLTNKRTDEYGGS-LENRARLLLEIYDAIRAAVG 214 (338)
T ss_pred HHHH-HHHcCCCEEEEchhhhhHHHHhc--CCcCCCCCccCCCC-HHHHHHHHHHHHHHHHHHcC
Confidence 5554 67789999999877411111110 01111112334543 34567888888888887654
No 253
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=34.86 E-value=1.1e+02 Score=33.13 Aligned_cols=28 Identities=18% Similarity=0.342 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEeeccc
Q psy9001 317 GTPEQLKYLVDECHKAGLYVLLDVVHSH 344 (1351)
Q Consensus 317 G~~~efk~LV~~~H~~GI~VILDvV~NH 344 (1351)
+..+-+..+.++|.+.||+|++-+-++.
T Consensus 62 ~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~ 89 (166)
T PF14488_consen 62 PPVDLLEMILDAADKYGMKVFVGLYFDP 89 (166)
T ss_pred CcccHHHHHHHHHHHcCCEEEEeCCCCc
Confidence 4457788999999999999998766653
No 254
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=34.32 E-value=2e+02 Score=33.78 Aligned_cols=20 Identities=35% Similarity=0.434 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHcCCEEEE
Q psy9001 319 PEQLKYLVDECHKAGLYVLL 338 (1351)
Q Consensus 319 ~~efk~LV~~~H~~GI~VIL 338 (1351)
=.+|.+-|+.|+++|++|+|
T Consensus 58 c~~~~~dI~~cq~~G~KVlL 77 (280)
T cd02877 58 CPQLGADIKHCQSKGKKVLL 77 (280)
T ss_pred chhHHHHHHHHHHCCCEEEE
Confidence 35899999999999999997
No 255
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=34.10 E-value=60 Score=38.55 Aligned_cols=95 Identities=18% Similarity=0.225 Sum_probs=45.9
Q ss_pred HHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHcC
Q psy9001 324 YLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQ 403 (1351)
Q Consensus 324 ~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~~W~~e~~ 403 (1351)
..|++||++|++|+==+.+.+-... .+-..-+. .++.+ .-.+.+.|++.++| ||
T Consensus 46 ~widaAHrnGV~vLGTiife~~~~~-~~~~~ll~--------~~~~g-------------~~~~A~kLi~ia~~----yG 99 (311)
T PF03644_consen 46 GWIDAAHRNGVKVLGTIIFEWGGGA-EWCEELLE--------KDEDG-------------SFPYADKLIEIAKY----YG 99 (311)
T ss_dssp HHHHHHHHTT--EEEEEEEEEE--H-HHHHHHT-----------TTS---------------HHHHHHHHHHHH----HT
T ss_pred hhHHHHHhcCceEEEEEEecCCchH-HHHHHHHc--------CCccc-------------ccHHHHHHHHHHHH----cC
Confidence 4689999999999755555221100 00000001 01111 12345666666665 89
Q ss_pred CCccccccccccccccCCCCCCCCCCccccCCC-ccCchHHHHHHHHHHHHHhhCCCeEEEE
Q psy9001 404 FDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGL-NVDTDALIYLMVANKFLHDKYPEIITIA 464 (1351)
Q Consensus 404 vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~-~~~~~~~~f~~~~~~~v~~~~P~~~~ia 464 (1351)
+||+=+-.-..+ .. .....-..|++.+++.+++ .|+..++=
T Consensus 100 FDGw~iN~E~~~-------------------~~~~~~~~l~~F~~~l~~~~~~-~~~~~v~W 141 (311)
T PF03644_consen 100 FDGWLINIETPL-------------------SGPEDAENLIDFLKYLRKEAHE-NPGSEVIW 141 (311)
T ss_dssp --EEEEEEEESS-------------------TTGGGHHHHHHHHHHHHHHHHH-T-T-EEEE
T ss_pred CCceEEEecccC-------------------CchhHHHHHHHHHHHHHHHhhc-CCCcEEEE
Confidence 999854322211 00 0112345899999999999 88876653
No 256
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=34.10 E-value=50 Score=39.35 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeec
Q psy9001 319 PEQLKYLVDECHKAGLYVLLDVVH 342 (1351)
Q Consensus 319 ~~efk~LV~~~H~~GI~VILDvV~ 342 (1351)
..++..|++.|+++||.|||-.=+
T Consensus 62 ~~dl~~f~~~a~~~gl~vilrpGp 85 (319)
T PF01301_consen 62 NRDLDRFLDLAQENGLYVILRPGP 85 (319)
T ss_dssp GG-HHHHHHHHHHTT-EEEEEEES
T ss_pred hhhHHHHHHHHHHcCcEEEecccc
Confidence 478999999999999999987433
No 257
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=33.70 E-value=98 Score=36.85 Aligned_cols=79 Identities=20% Similarity=0.271 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEee-ccccccCCcCCcccCCC----CCCcCcccCCCCCCCCCC--CccCCCCCHHHHHH
Q psy9001 318 TPEQLKYLVDECHKAGLYVLLDVV-HSHASKNVLDGLNEFDG----TQACFFHDGPRGTHPLWD--SRLFNYSEIEVLRF 390 (1351)
Q Consensus 318 ~~~efk~LV~~~H~~GI~VILDvV-~NH~~~~~~~~~~~f~g----~~~~yy~~~~~~~~~~w~--~~~ln~~~p~v~~~ 390 (1351)
|.+|+++||+.|+++||+||-.+- +.|+..-... ...+.. .+..+.. ...+. ...||..+|++.++
T Consensus 71 T~~di~~lv~yA~~~gI~VIPeid~PGH~~~~l~~-~p~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~t~~~ 143 (351)
T PF00728_consen 71 TKEDIRELVAYAKERGIEVIPEIDTPGHAEAWLKA-YPELGCSAWPEDKSWPN------STCWYPDNGVLDPSNPETYEF 143 (351)
T ss_dssp EHHHHHHHHHHHHHTT-EEEEEEEESSS-HHHHHH-HHHHCCCHTTCSSSCEE------EETTSEEEEEE-TTSHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCceeeeccCchHHHHHHHh-Cchhhcccccccccccc------ccccCCCcccCCCCcHHHHHH
Confidence 679999999999999999999884 7888642100 000000 0000000 01111 13689999999999
Q ss_pred HHHHHHHHHHHcC
Q psy9001 391 LLSNLRWYLDEYQ 403 (1351)
Q Consensus 391 l~~~l~~W~~e~~ 403 (1351)
+.+.+.-.++-+.
T Consensus 144 ~~~l~~e~~~~f~ 156 (351)
T PF00728_consen 144 LKDLLDEVADLFP 156 (351)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhCC
Confidence 9999999998655
No 258
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=33.60 E-value=96 Score=37.26 Aligned_cols=63 Identities=19% Similarity=0.287 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCCh-hHHHHHHHHHHHHHhhCCCeE
Q psy9001 1096 SEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDT-DALIYLMVANKFLHDKYPEII 1174 (1351)
Q Consensus 1096 ~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~-~~~~fl~~~~~~l~~~~Pd~i 1174 (1351)
.++..|+.+++++.-|+++|++||.-+|--....+ + +...+. .-..+++++++.+++..++.+
T Consensus 92 ~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~p~~~---~-------------~~~~d~~~~~~ll~~lr~~l~~~~~~~~ 155 (362)
T cd02872 92 ASPENRKTFIKSAIAFLRKYGFDGLDLDWEYPGQR---G-------------GPPEDKENFVTLLKELREAFEPEAPRLL 155 (362)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeeeeeeccccC---C-------------CCHHHHHHHHHHHHHHHHHHHhhCcCeE
Confidence 45788999999999999999999999994321100 0 011122 246688888888877644433
No 259
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=32.30 E-value=1e+02 Score=38.56 Aligned_cols=83 Identities=12% Similarity=0.130 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEe-ecccccCCcc------ccCcCCCCCC--C-ccccCCCC---CCC--CCCCCCCCCC
Q psy9001 1031 TPEQLKYLVDECHKAGLYVLLDV-VHSHASKNVL------DGLNEFDGTQ--A-CFFHDGPR---GTH--PLWDSRLFNY 1095 (1351)
Q Consensus 1031 t~edfK~LV~~aH~~GI~VILDV-V~NHts~~~~------~~l~~~dg~~--~-~yf~~~~~---g~~--~~w~~~dlN~ 1095 (1351)
|.+|+|++|+-|+++||.||-.+ ++.|+..--. ..+... +.. . .|-..++. ... ..|..+.||-
T Consensus 95 T~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~a~~~~yp~l~~~-g~~~~~~~~~~~d~~~~~~~~~~~~~~~~~L~p 173 (445)
T cd06569 95 SRADYIEILKYAKARHIEVIPEIDMPGHARAAIKAMEARYRKLMAA-GKPAEAEEYRLSDPADTSQYLSVQFYTDNVINP 173 (445)
T ss_pred CHHHHHHHHHHHHHcCCEEEEccCCchhHHHHHHhhhccchhhhcc-CCccccccccccCcccccccccccccccccccC
Confidence 89999999999999999999887 4577654110 001000 110 0 01101110 001 1133457999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q psy9001 1096 SEIEVLRFLLSNLRWYLEE 1114 (1351)
Q Consensus 1096 ~np~Vr~~lid~l~yWl~e 1114 (1351)
.+|++.++|.+.+.-.++-
T Consensus 174 ~~~~ty~fl~~vl~Ev~~l 192 (445)
T cd06569 174 CMPSTYRFVDKVIDEIARM 192 (445)
T ss_pred CchhHHHHHHHHHHHHHHH
Confidence 9999999999999988874
No 260
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=31.40 E-value=71 Score=38.06 Aligned_cols=75 Identities=17% Similarity=0.278 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEee-ccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHHHHHHH
Q psy9001 318 TPEQLKYLVDECHKAGLYVLLDVV-HSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLR 396 (1351)
Q Consensus 318 ~~~efk~LV~~~H~~GI~VILDvV-~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l~~~l~ 396 (1351)
|.+|+|+||+-|.++||.||-.+- +.|+..-.. .+.. +..... ...-....||..+|++.+++.+.+.
T Consensus 80 T~~di~eiv~yA~~rgI~vIPEID~PGH~~a~~~----~~pe-----l~~~~~--~~~~~~~~l~~~~~~t~~f~~~l~~ 148 (326)
T cd06564 80 TKEEFKELIAYAKDRGVNIIPEIDSPGHSLAFTK----AMPE-----LGLKNP--FSKYDKDTLDISNPEAVKFVKALFD 148 (326)
T ss_pred cHHHHHHHHHHHHHcCCeEeccCCCcHHHHHHHH----hhHH-----hcCCCc--ccCCCcccccCCCHHHHHHHHHHHH
Confidence 789999999999999999997763 677653210 0000 000000 0011234789999999999999999
Q ss_pred HHHHHcC
Q psy9001 397 WYLDEYQ 403 (1351)
Q Consensus 397 ~W~~e~~ 403 (1351)
-.++-|.
T Consensus 149 E~~~~f~ 155 (326)
T cd06564 149 EYLDGFN 155 (326)
T ss_pred HHHHhcC
Confidence 8887554
No 261
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=30.81 E-value=1.2e+02 Score=29.32 Aligned_cols=50 Identities=20% Similarity=0.343 Sum_probs=32.4
Q ss_pred EEEEEEEeec---CCCCccccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCc
Q psy9001 74 MHVVCAAGDF---NNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGH 131 (1351)
Q Consensus 74 A~~V~LvGDF---N~Wd~~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~ 131 (1351)
-++|.|+|+- .+|+. ..+|.-. .+.|++.+.- ..+. --.|||.+.+.+|.
T Consensus 15 Gq~l~v~G~~~~LG~W~~-~~~l~~~-~~~W~~~~~l-~~~~-----~ieyKy~~~~~~~~ 67 (92)
T cd05818 15 GEHVAILGSTKELGSWKK-KVPMNWT-ENGWVCDLEL-DGGE-----LVEYKFVIVKRDGS 67 (92)
T ss_pred CCEEEEEeChHHHCCCCC-CCccccC-CCCEEEEEEe-CCCC-----cEEEEEEEEcCCCC
Confidence 3578899965 68984 4577654 4569887642 2221 24899999865553
No 262
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=30.81 E-value=2.3e+02 Score=36.14 Aligned_cols=89 Identities=20% Similarity=0.299 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccccCCcccc-------CcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHH
Q psy9001 1032 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG-------LNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFL 1104 (1351)
Q Consensus 1032 ~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~-------l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~l 1104 (1351)
-+.+.++=.-|+++||.+|.|+.+.=......-+ +..-.|.++.+|... -.+|+..-.| |++.+
T Consensus 209 ~~Q~~~~k~~A~~~~I~i~gDLpv~va~~saDvW~~~~~f~~~~~~GaPPD~f~~~----GQ~Wg~p~yn---~~~l~-- 279 (520)
T COG1640 209 FRQLAALKRYANDMGIGIIGDLPVGVAQDSADVWANPEYFCLDESAGAPPDVFNAQ----GQDWGLPPYN---PEALK-- 279 (520)
T ss_pred HHHHHHHHHHHHhcCceEeecccceecCCchhhhcCcccccccccCCCCCCccccc----ccccCCCCCC---HHHHH--
Confidence 3455566666777999999999876322211111 011113344444321 2356555333 33332
Q ss_pred HHHHHHHHHHh-----CCCeEEEcCccccc
Q psy9001 1105 LSNLRWYLEEY-----QFDGFRFDGVTSML 1129 (1351)
Q Consensus 1105 id~l~yWl~ey-----gVDGFRfD~a~~m~ 1129 (1351)
.+..++|++.+ .+|+.|+|-+.-+.
T Consensus 280 ~~~y~wwierlr~~~~~~~~lRIDHf~Gl~ 309 (520)
T COG1640 280 KDGYDWWIERLRANLKLYGILRIDHFRGLF 309 (520)
T ss_pred HcccHHHHHHHHHHHHhcCeeeeeeecchh
Confidence 23344555543 57999999887654
No 263
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=30.40 E-value=1.2e+02 Score=29.77 Aligned_cols=52 Identities=17% Similarity=0.394 Sum_probs=34.6
Q ss_pred EEEEEEee---cCCCCccc---c-ceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCce
Q psy9001 75 HVVCAAGD---FNNWNREE---F-AYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHL 132 (1351)
Q Consensus 75 ~~V~LvGD---FN~Wd~~~---~-~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~~ 132 (1351)
++|.|+|+ +.+|+... . +|.......|++.++ +..|. --.|||.+.+.+|..
T Consensus 19 e~l~vvGs~~~LG~W~~~~~~a~~~l~~~~~~~W~~~~~-lp~~~-----~veyK~v~~~~~g~v 77 (103)
T cd05820 19 EFLYLTGSVPELGNWSTSTDQAVGPLLCPNWPDWFVVAS-VPAGT-----YIEFKFLKAPADGTG 77 (103)
T ss_pred CEEEEEECcHHhCCCChhccccccccccCCCCCEEEEEE-cCCCC-----cEEEEEEEECCCCCE
Confidence 57889985 45898642 2 776556678988875 22332 248999998666643
No 264
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=30.32 E-value=1.1e+02 Score=29.71 Aligned_cols=52 Identities=19% Similarity=0.330 Sum_probs=32.7
Q ss_pred EEEEEEEee---cCCCCcc-ccceeec---CCCeEEEEcCCCCCCCcccCcccEEEEEEEecCCc
Q psy9001 74 MHVVCAAGD---FNNWNRE-EFAYKKL---DFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGH 131 (1351)
Q Consensus 74 A~~V~LvGD---FN~Wd~~-~~~M~k~---~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g~ 131 (1351)
=++|.|+|+ +.+|+.. ..+|... +...|++.|.-.. + ..-.|||.+.+.++.
T Consensus 13 Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~-~-----~~veYky~v~~~~~~ 71 (101)
T cd05815 13 GQSLLICGSDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPP-G-----FSSEYNYYVVDDRKS 71 (101)
T ss_pred CCEEEEEcChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCC-C-----CcEEEEEEEEcCCCc
Confidence 357888884 4689864 5788642 3348988874322 2 125899998644443
No 265
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=30.00 E-value=1.4e+02 Score=35.33 Aligned_cols=56 Identities=18% Similarity=0.228 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhh
Q psy9001 1096 SEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDK 1169 (1351)
Q Consensus 1096 ~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~ 1169 (1351)
.++..|+.+++++.-|+++|++||+-+|--..-. .+ .+...-..|+++++..+++.
T Consensus 87 ~~~~~r~~fi~~i~~~~~~~~~DGidiDwE~~~~-----------------~~-~d~~~~~~ll~~lr~~l~~~ 142 (334)
T smart00636 87 SDPASRKKFIDSIVSFLKKYGFDGIDIDWEYPGA-----------------RG-DDRENYTALLKELREALDKE 142 (334)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEECCcCCCC-----------------Cc-cHHHHHHHHHHHHHHHHHHh
Confidence 5578999999999999999999999999543110 00 11123466888888888764
No 266
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=29.44 E-value=1.4e+02 Score=35.40 Aligned_cols=30 Identities=17% Similarity=0.225 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCeEEEcCc
Q psy9001 1096 SEIEVLRFLLSNLRWYLEEYQFDGFRFDGV 1125 (1351)
Q Consensus 1096 ~np~Vr~~lid~l~yWl~eygVDGFRfD~a 1125 (1351)
.+++.|+.+++++.-|+++|++||+-+|--
T Consensus 105 ~~~~~r~~Fi~siv~~l~~~~fDGidiDwE 134 (322)
T cd06548 105 ATEASRAKFADSAVDFIRKYGFDGIDIDWE 134 (322)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEECCc
Confidence 467889999999999999999999999943
No 267
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=29.35 E-value=2.3e+02 Score=27.74 Aligned_cols=53 Identities=23% Similarity=0.250 Sum_probs=32.7
Q ss_pred ceeEEE-------EEEEEEEeecC--CCCccccceeecC----CCeEEEEcCCCCCCCcccCcccEEEEEEEe
Q psy9001 68 AGLLCF-------MHVVCAAGDFN--NWNREEFAYKKLD----FGKWELVLPPNPDGSCKLTHLSQVKLVVRN 127 (1351)
Q Consensus 68 ~gv~F~-------A~~V~LvGDFN--~Wd~~~~~M~k~~----~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~ 127 (1351)
.-|+++ +++|.|+-.-. .+.....+|++.. ...|++.|+... |. ..|.|.|.+
T Consensus 16 ~~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~~~~~~~~~~~i~~~~-~~------~~Y~F~l~~ 81 (116)
T cd02857 16 DTLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGSDELFDYWEATLPPPT-GR------LRYYFELVD 81 (116)
T ss_pred CEEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeeeCCceeEEEEEEecCC-cE------EEEEEEEEc
Confidence 446666 57888864222 2334567998732 357999997543 42 578888864
No 268
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=28.92 E-value=1.2e+02 Score=36.33 Aligned_cols=63 Identities=19% Similarity=0.283 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCc-hHHHHHHHHHHHHHhhCCCeE
Q psy9001 383 SEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDT-DALIYLMVANKFLHDKYPEII 461 (1351)
Q Consensus 383 ~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~f~~~~~~~v~~~~P~~~ 461 (1351)
.++..|+.+++++.-|++++++||+-+|--....+ + +...+. .-..|++++++++++..++..
T Consensus 92 ~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~p~~~-----~-----------~~~~d~~~~~~ll~~lr~~l~~~~~~~~ 155 (362)
T cd02872 92 ASPENRKTFIKSAIAFLRKYGFDGLDLDWEYPGQR-----G-----------GPPEDKENFVTLLKELREAFEPEAPRLL 155 (362)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeeeeeeccccC-----C-----------CCHHHHHHHHHHHHHHHHHHHhhCcCeE
Confidence 46788999999999999999999998884221100 0 000112 235788999999987644443
No 269
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=28.84 E-value=1.6e+02 Score=34.71 Aligned_cols=53 Identities=17% Similarity=0.125 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChh-HHHHHHHHHHHHHh
Q psy9001 1096 SEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTD-ALIYLMVANKFLHD 1168 (1351)
Q Consensus 1096 ~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~-~~~fl~~~~~~l~~ 1168 (1351)
.++..|+.+++++.-++++|++||.-+|=-. .+...|.+ -..+++++++++++
T Consensus 88 ~~~~~R~~fi~siv~~l~~~~fDGidiDWE~--------------------P~~~~d~~n~~~ll~elr~~l~~ 141 (299)
T cd02879 88 SDPTARKAFINSSIKVARKYGFDGLDLDWEF--------------------PSSQVEMENFGKLLEEWRAAVKD 141 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceeecccC--------------------CCChhHHHHHHHHHHHHHHHHHH
Confidence 5778899999999999999999999999331 01111222 35678888888874
No 270
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=28.56 E-value=1.2e+03 Score=28.72 Aligned_cols=102 Identities=19% Similarity=0.103 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCCCCCHHHHHHH---HHHH
Q psy9001 319 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFL---LSNL 395 (1351)
Q Consensus 319 ~~efk~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p~v~~~l---~~~l 395 (1351)
.+=+++|+++|+++||++-+ + |...+ |. ++.|-.. +.........+...+|+ ..-+
T Consensus 127 rDiv~el~~A~rk~Glk~G~---Y-~S~~D--W~-------~p~y~~~--------~~~~~~~~~~~~~~~y~~~~~~Ql 185 (384)
T smart00812 127 RDLVGELADAVRKRGLKFGL---Y-HSLFD--WF-------NPLYAGP--------TSSDEDPDNWPRFQEFVDDWLPQL 185 (384)
T ss_pred cchHHHHHHHHHHcCCeEEE---E-cCHHH--hC-------CCccccc--------cccccccccchhHHHHHHHHHHHH
Confidence 47799999999999999887 2 22222 10 0111100 00001122345566777 8888
Q ss_pred HHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhhCCCe--EEEEE
Q psy9001 396 RWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEI--ITIAE 465 (1351)
Q Consensus 396 ~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~P~~--~~iaE 465 (1351)
+-.++.||-|.+=||....- .. ..--++++.+.+++..|++ ++|.-
T Consensus 186 ~ELit~Ygpd~lWfD~~~~~-------~~-----------------~~~~~~~l~~~~~~~qP~~~~vvvn~ 233 (384)
T smart00812 186 RELVTRYKPDLLWFDGGWEA-------PD-----------------DYWRSKEFLAWLYNLSPVKDTVVVND 233 (384)
T ss_pred HHHHhcCCCceEEEeCCCCC-------cc-----------------chhcHHHHHHHHHHhCCCCceEEEEc
Confidence 88889999999999964311 00 0001356777888899987 45443
No 271
>PLN03059 beta-galactosidase; Provisional
Probab=27.90 E-value=4.2e+02 Score=35.76 Aligned_cols=121 Identities=12% Similarity=0.125 Sum_probs=62.6
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCcccc-CCCCCCCCCCC----CCCCCCCCHHHHHH
Q psy9001 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFH-DGPRGTHPLWD----SRLFNYSEIEVLRF 1103 (1351)
Q Consensus 1029 yGt~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~-~~~~g~~~~w~----~~dlN~~np~Vr~~ 1103 (1351)
|.+..||.++|+.|++.||.|||=. + .|-. ....|-.+.|= +-.+-..++.-.+.
T Consensus 94 F~G~~DL~~Fl~la~e~GLyvilRp-----G---------------PYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~ 153 (840)
T PLN03059 94 FEDRYDLVKFIKVVQAAGLYVHLRI-----G---------------PYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAA 153 (840)
T ss_pred ccchHHHHHHHHHHHHcCCEEEecC-----C---------------cceeeeecCCCCchhhhcCCCcccccCCHHHHHH
Confidence 4568999999999999999999862 1 1111 11223455551 12455667765555
Q ss_pred HHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCc---CChhHHHHHHHHHHHHHhhCCCeEEEEcc
Q psy9001 1104 LLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLN---VDTDALIYLMVANKFLHDKYPEIITIAED 1179 (1351)
Q Consensus 1104 lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~---~d~~~~~fl~~~~~~l~~~~Pd~ilIaE~ 1179 (1351)
+...+...+....-.++-..--+-++-- -..++||.. .......+++.+.+.+++..-++.++.-+
T Consensus 154 v~~~~~~l~~~l~~~~l~~~~GGPIImv----------QIENEYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~VPl~t~d 222 (840)
T PLN03059 154 MQKFTEKIVDMMKSEKLFEPQGGPIILS----------QIENEYGPVEWEIGAPGKAYTKWAADMAVKLGTGVPWVMCK 222 (840)
T ss_pred HHHHHHHHHHHHhhcceeecCCCcEEEE----------EecccccceecccCcchHHHHHHHHHHHHHcCCCcceEECC
Confidence 5555555444421111111111111100 122333321 01234667788888777766666665543
No 272
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=27.30 E-value=1.9e+02 Score=34.80 Aligned_cols=131 Identities=14% Similarity=0.126 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCC--CC-CccccCCCCCCCCCCCCCCCCCCCHHHHH---HHH
Q psy9001 1032 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDG--TQ-ACFFHDGPRGTHPLWDSRLFNYSEIEVLR---FLL 1105 (1351)
Q Consensus 1032 ~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg--~~-~~yf~~~~~g~~~~w~~~dlN~~np~Vr~---~li 1105 (1351)
++.||+|++++|+.|-++++-+ +|++............ .. ....... ...++..--..+..++++ ...
T Consensus 79 i~~~k~l~~~vh~~Ga~i~~QL--~H~G~~~~~~~~~~~~~~psa~~~~~~~----~~~~~~~~~~mt~~eI~~ii~~f~ 152 (341)
T PF00724_consen 79 IPGLKKLADAVHAHGAKIIAQL--WHAGRQANPEYSGDPPVGPSAPSALPSP----IKFMGYPPREMTEEEIEEIIEDFA 152 (341)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEE--E--GGGSSGCCSGGGCEESSCSSSSSTT----TTETSCEEEE--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccceeec--cccccccCcccCCCCccCcccccccCcc----cccCCCCCeeCCHHHHHHHHHHHH
Confidence 7899999999999999999997 5666543211111100 00 0000000 000000000112222222 222
Q ss_pred HHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCC
Q psy9001 1106 SNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPE 1172 (1351)
Q Consensus 1106 d~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd 1172 (1351)
++.+ .+.+-|+||.-+-++.--+-+++- .+.+-.-...||++ -..-+.|+.++.+.|++.-++
T Consensus 153 ~AA~-~A~~AGfDGVEIH~ahGyLl~qFL--Sp~~N~RtDeYGGs-~ENR~Rf~~Eii~aIr~~vg~ 215 (341)
T PF00724_consen 153 QAAR-RAKEAGFDGVEIHAAHGYLLSQFL--SPLTNRRTDEYGGS-LENRARFLLEIIEAIREAVGP 215 (341)
T ss_dssp HHHH-HHHHTT-SEEEEEESTTSHHHHHH--STTT---SSTTSSS-HHHHHHHHHHHHHHHHHHHTG
T ss_pred HHHH-HHHHhccCeEeecccchhhhhhee--eeccCCCchhhhhh-hchhhHHHHHHHHHHHHHhcC
Confidence 3333 456689999999998522211110 01111122344542 234578888888888876443
No 273
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=27.17 E-value=53 Score=39.12 Aligned_cols=80 Identities=19% Similarity=0.221 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEe-ecccccCCcc--ccCcCC-CCCCCccccCCCCCCCCCCC--CCCCCCCCHHHHHHH
Q psy9001 1031 TPEQLKYLVDECHKAGLYVLLDV-VHSHASKNVL--DGLNEF-DGTQACFFHDGPRGTHPLWD--SRLFNYSEIEVLRFL 1104 (1351)
Q Consensus 1031 t~edfK~LV~~aH~~GI~VILDV-V~NHts~~~~--~~l~~~-dg~~~~yf~~~~~g~~~~w~--~~dlN~~np~Vr~~l 1104 (1351)
|.+|+++||+-|+++||+||-.| ++.|+..--. ..+... ...+..+.. ...+. ...||..+|++.+++
T Consensus 71 T~~di~~lv~yA~~~gI~VIPeid~PGH~~~~l~~~p~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~t~~~~ 144 (351)
T PF00728_consen 71 TKEDIRELVAYAKERGIEVIPEIDTPGHAEAWLKAYPELGCSAWPEDKSWPN------STCWYPDNGVLDPSNPETYEFL 144 (351)
T ss_dssp EHHHHHHHHHHHHHTT-EEEEEEEESSS-HHHHHHHHHHCCCHTTCSSSCEE------EETTSEEEEEE-TTSHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCceeeeccCchHHHHHHHhCchhhcccccccccccc------ccccCCCcccCCCCcHHHHHHH
Confidence 68999999999999999999888 4577655210 001100 000000000 00111 125999999999999
Q ss_pred HHHHHHHHHHhC
Q psy9001 1105 LSNLRWYLEEYQ 1116 (1351)
Q Consensus 1105 id~l~yWl~eyg 1116 (1351)
.+.+.-.++-+.
T Consensus 145 ~~l~~e~~~~f~ 156 (351)
T PF00728_consen 145 KDLLDEVADLFP 156 (351)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHhhCC
Confidence 999999998766
No 274
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=27.08 E-value=1.2e+02 Score=40.05 Aligned_cols=90 Identities=14% Similarity=0.214 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHcCCEEEEEeeccccccCC-cCCc---c---cCCCCCCcCcccCCCCCCCCCCCccCCCCCH--HHHHH
Q psy9001 320 EQLKYLVDECHKAGLYVLLDVVHSHASKNV-LDGL---N---EFDGTQACFFHDGPRGTHPLWDSRLFNYSEI--EVLRF 390 (1351)
Q Consensus 320 ~efk~LV~~~H~~GI~VILDvV~NH~~~~~-~~~~---~---~f~g~~~~yy~~~~~~~~~~w~~~~ln~~~p--~v~~~ 390 (1351)
.+++++-+.|+++||+++-|+.+.=..... -|.. . .-.|..+.+|... | .+|+.+.+|+..= .--+.
T Consensus 274 ~Q~~~~~~yA~~~GI~L~GDLPIgVa~dSaDvWa~p~lF~ld~~aGAPPD~FS~~--G--QnWG~P~YnW~~l~~dgY~W 349 (745)
T PLN03236 274 RQLRRAAAHAAAKGVILKGDLPIGVDKASVDTWMHPKLFRMDTSTGAPPDAFDAN--G--QNWGFPTYDWEEMAEDDYAW 349 (745)
T ss_pred HHHHHHHHHHHHCCCEEEEEeeceeCCCcHHHhcCHHHhcCCCCcCCCCCCCCcc--c--CcCCCCCcCHHHHHhcCcHH
Confidence 357778888999999999999865332211 1221 1 1134455666432 2 3677666665421 11133
Q ss_pred HHHHHHHHHHHcCCCcccccccccc
Q psy9001 391 LLSNLRWYLDEYQFDGFRFDGVTSM 415 (1351)
Q Consensus 391 l~~~l~~W~~e~~vDGfR~D~a~~~ 415 (1351)
.++.+++-++ .+|++|+|-+--+
T Consensus 350 Wr~Rlr~~~~--~~dalRIDH~~Gf 372 (745)
T PLN03236 350 WRARMQHLEQ--FFSAIRIDHILGF 372 (745)
T ss_pred HHHHHHHHHH--hCCeEEeechhhh
Confidence 4555555444 5799999965433
No 275
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=26.81 E-value=1.7e+02 Score=38.36 Aligned_cols=80 Identities=16% Similarity=0.088 Sum_probs=51.2
Q ss_pred HHHcCCEEEEEeecccccCCcc-ccCcCCCCCCCccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeE
Q psy9001 1042 CHKAGLYVLLDVVHSHASKNVL-DGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGF 1120 (1351)
Q Consensus 1042 aH~~GI~VILDVV~NHts~~~~-~~l~~~dg~~~~yf~~~~~g~~~~w~~~dlN~~np~Vr~~lid~l~yWl~eygVDGF 1120 (1351)
+|++|++|.-=+-+=-++-+.. .....++ ...++...++.|..+ |+-.+|+||+.|.++..=.+..|.|||.
T Consensus 390 ~~r~~v~v~AWmp~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~r-l~P~~pe~r~~i~~i~~dla~~~~~dGi 462 (671)
T PRK14582 390 RTRAGVNVYAWMPVLSFDLDPTLPRVKRLD------TGEGKAQIHPEQYRR-LSPFDDRVRAQVGMLYEDLAGHAAFDGI 462 (671)
T ss_pred HHhhCCEEEEeccceeeccCCCcchhhhcc------ccCCccccCCCCCcC-CCCCCHHHHHHHHHHHHHHHHhCCCceE
Confidence 9999999986654332221100 0000000 001112234556444 9999999999999999999999999999
Q ss_pred EEcCcccc
Q psy9001 1121 RFDGVTSM 1128 (1351)
Q Consensus 1121 RfD~a~~m 1128 (1351)
-||-=..+
T Consensus 463 lf~Dd~~l 470 (671)
T PRK14582 463 LFHDDAVL 470 (671)
T ss_pred Eecccccc
Confidence 99866544
No 276
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=26.37 E-value=1.1e+03 Score=27.98 Aligned_cols=132 Identities=17% Similarity=0.211 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCC--------CccccCCCCCCCCCC-CCCCCCCCCH---
Q psy9001 1031 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQ--------ACFFHDGPRGTHPLW-DSRLFNYSEI--- 1098 (1351)
Q Consensus 1031 t~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~--------~~yf~~~~~g~~~~w-~~~dlN~~np--- 1098 (1351)
-.+.||+|++++|+.|-++++-+ +|.+...........+.. ..-...........+ ... ..+..
T Consensus 75 ~~~~~~~l~~~vh~~G~~~~~QL--~H~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~~~~~~~~~~p~--~mt~~eI~ 150 (336)
T cd02932 75 QIEALKRIVDFIHSQGAKIGIQL--AHAGRKASTAPPWEGGGPLLPPGGGGWQVVAPSAIPFDEGWPTPR--ELTREEIA 150 (336)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEc--cCCCcCCCCCCCccccccccccccCCCceeCCCCCcCCCCCCCCC--cCCHHHHH
Confidence 37889999999999999999986 466554311000000000 000000000000000 001 11222
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEcCcc-cccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCC
Q psy9001 1099 EVLRFLLSNLRWYLEEYQFDGFRFDGVT-SMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYP 1171 (1351)
Q Consensus 1099 ~Vr~~lid~l~yWl~eygVDGFRfD~a~-~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~P 1171 (1351)
.+.+.+.++++...+ .|+||+-+-++. .|+. ++- .+..-.-...+|+. -.....|+.++.+.|++..+
T Consensus 151 ~ii~~~~~aA~~a~~-aGfDgVei~~~~gyLl~-qFl--sp~~N~R~D~yGgs-l~nr~rf~~eiv~aIR~~vG 219 (336)
T cd02932 151 EVVDAFVAAARRAVE-AGFDVIEIHAAHGYLLH-QFL--SPLSNKRTDEYGGS-LENRMRFLLEVVDAVRAVWP 219 (336)
T ss_pred HHHHHHHHHHHHHHH-cCCCEEEEccccccHHH-Hhc--CCccCCCCcccCCC-HHHHhHHHHHHHHHHHHHcC
Confidence 344455567777766 599999998764 2211 100 00000111223432 34467788888888887653
No 277
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=25.93 E-value=1.1e+02 Score=29.85 Aligned_cols=50 Identities=18% Similarity=0.409 Sum_probs=33.5
Q ss_pred EEEEEEeec---CCCCc-cccceeecCCCeEEEEcCCCCCCCcccCcccEEEEEEEecCC
Q psy9001 75 HVVCAAGDF---NNWNR-EEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHG 130 (1351)
Q Consensus 75 ~~V~LvGDF---N~Wd~-~~~~M~k~~~GvW~~~ip~~~~G~~~~~~g~~Y~y~i~~~~g 130 (1351)
++|+|+|+- .+|+. ...+|.......|++.|.- ..+. --.|||.+.+.++
T Consensus 16 e~l~v~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~l-p~~~-----~veyKyv~~~~~~ 69 (97)
T cd05810 16 QSVYVVGNVPQLGNWSPADAVKLDPTAYPTWSGSISL-PAST-----NVEWKCLKRNETN 69 (97)
T ss_pred CeEEEEEChHHhCCCChhhcccccCCCCCeEEEEEEc-CCCC-----eEEEEEEEEcCCC
Confidence 578899965 58986 3477866667889988742 2231 2479997765544
No 278
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=25.82 E-value=1.9e+02 Score=34.06 Aligned_cols=65 Identities=18% Similarity=0.210 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhC----CC
Q psy9001 1097 EIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKY----PE 1172 (1351)
Q Consensus 1097 np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~----Pd 1172 (1351)
++.-|+.+++++.-++++|++||+-+|--...... . ......-..|+++++..+++.. .-
T Consensus 96 ~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~~~----------~------~~~~~~~~~~l~~L~~~l~~~~~~~~~~ 159 (343)
T PF00704_consen 96 NPAKRQNFINNIVSFLKKYGFDGIDIDWEYPSSSG----------D------PQDKDNYTAFLKELRKALKRANRSGKGY 159 (343)
T ss_dssp SHHHHHHHHHHHHHHHHHHT-SEEEEEESSTTSTS----------S------TTHHHHHHHHHHHHHHHHHHHHHHHSTS
T ss_pred cHHHHHHHHHhhhhhhcccCcceeeeeeeeccccc----------c------chhhhhhhhhhhhhhhhhccccccccee
Confidence 45789999999999999999999999866432100 0 0011234668888988888752 34
Q ss_pred eEEEE
Q psy9001 1173 IITIA 1177 (1351)
Q Consensus 1173 ~ilIa 1177 (1351)
.+.++
T Consensus 160 ~ls~a 164 (343)
T PF00704_consen 160 ILSVA 164 (343)
T ss_dssp EEEEE
T ss_pred EEeec
Confidence 55565
No 279
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=25.55 E-value=7.5e+02 Score=30.28 Aligned_cols=128 Identities=13% Similarity=0.157 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccc-cCCccccCcCCCCCCCccccCCCCCCCCCCCC-C-CCCCCCHH---HHHHHH
Q psy9001 1032 PEQLKYLVDECHKAGLYVLLDVVHSHA-SKNVLDGLNEFDGTQACFFHDGPRGTHPLWDS-R-LFNYSEIE---VLRFLL 1105 (1351)
Q Consensus 1032 ~edfK~LV~~aH~~GI~VILDVV~NHt-s~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~~-~-dlN~~np~---Vr~~li 1105 (1351)
++.||+|++++|+.|-++++-+ +|. +......... + ... . .+......+.. . --..+..+ +.+-..
T Consensus 82 i~~~k~l~davh~~G~~i~~QL--~H~~Gr~~~~~~~~--~-~~~-~--~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~ 153 (382)
T cd02931 82 IRTAKEMTERVHAYGTKIFLQL--TAGFGRVCIPGFLG--E-DKP-V--APSPIPNRWLPEITCRELTTEEVETFVGKFG 153 (382)
T ss_pred hHHHHHHHHHHHHcCCEEEEEc--cCcCCCccCccccC--C-CCc-c--CCCCCCCCcCCCCCCCcCCHHHHHHHHHHHH
Confidence 5789999999999999999776 575 4432111100 0 000 0 00000000000 0 01112222 222333
Q ss_pred HHHHHHHHHhCCCeEEEcCcc--cccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCCC
Q psy9001 1106 SNLRWYLEEYQFDGFRFDGVT--SMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPE 1172 (1351)
Q Consensus 1106 d~l~yWl~eygVDGFRfD~a~--~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~Pd 1172 (1351)
++. ..+.+.|+||.-+-++. .++..-.+ +..-.-...||+. -...+.|+.++.+.|++.-+.
T Consensus 154 ~AA-~ra~~AGfDgVEih~ah~GyLl~qFLS---p~~N~RtDeyGGs-lenR~rf~~eii~~vr~~~g~ 217 (382)
T cd02931 154 ESA-VIAKEAGFDGVEIHAVHEGYLLDQFTI---SLFNKRTDKYGGS-LENRLRFAIEIVEEIKARCGE 217 (382)
T ss_pred HHH-HHHHHcCCCEEEEeccccChHHHHhcC---CccCCCCCcCCCC-HHHHhHHHHHHHHHHHHhcCC
Confidence 333 33556799999999874 34321111 1111122234543 344678888999999887643
No 280
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=25.33 E-value=1.4e+02 Score=34.17 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHcCCEEEE
Q psy9001 319 PEQLKYLVDECHKAGLYVLL 338 (1351)
Q Consensus 319 ~~efk~LV~~~H~~GI~VIL 338 (1351)
.++..++|+.++++|++|+-
T Consensus 99 ~~~~~rlI~~~~~~g~~v~~ 118 (237)
T TIGR03849 99 LEERCNLIERAKDNGFMVLS 118 (237)
T ss_pred HHHHHHHHHHHHhCCCeEec
Confidence 47889999999999999883
No 281
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=25.26 E-value=1.4e+02 Score=33.42 Aligned_cols=21 Identities=14% Similarity=0.328 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEE
Q psy9001 318 TPEQLKYLVDECHKAGLYVLL 338 (1351)
Q Consensus 318 ~~~efk~LV~~~H~~GI~VIL 338 (1351)
+.++++++.+.+.++|+.|++
T Consensus 191 ~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 191 SSADVATMREMAERAGFQVTV 211 (213)
T ss_pred CHHHHHHHHHHHHHcCCeEEe
Confidence 578899999999999999874
No 282
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=24.93 E-value=9.9e+02 Score=29.08 Aligned_cols=127 Identities=11% Similarity=0.033 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCC-C---CCCCCCCCCCCH---HHHHH
Q psy9001 1031 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTH-P---LWDSRLFNYSEI---EVLRF 1103 (1351)
Q Consensus 1031 t~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~-~---~w~~~dlN~~np---~Vr~~ 1103 (1351)
.++.||+|++++|+.|-++++-+. |.+........ +. .. . .+.... . .+...--..+.. ++.+-
T Consensus 81 ~i~~~~~l~~~vh~~G~~i~~QL~--H~G~~~~~~~~---~~-~~-~--~ps~~~~~~~~~~~~~p~~mt~~eI~~ii~~ 151 (370)
T cd02929 81 DIRNLAAMTDAVHKHGALAGIELW--HGGAHAPNRES---RE-TP-L--GPSQLPSEFPTGGPVQAREMDKDDIKRVRRW 151 (370)
T ss_pred HHHHHHHHHHHHHHCCCeEEEecc--cCCCCCCccCC---CC-Cc-c--CCCCCCCCccccCCCCCccCCHHHHHHHHHH
Confidence 378999999999999999999875 77654311000 00 00 0 000000 0 000000112222 33334
Q ss_pred HHHHHHHHHHHhCCCeEEEcCcc-cccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCC
Q psy9001 1104 LLSNLRWYLEEYQFDGFRFDGVT-SMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYP 1171 (1351)
Q Consensus 1104 lid~l~yWl~eygVDGFRfD~a~-~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~P 1171 (1351)
+.++.+ -+.+.|+||.-+-++. +++. ++- .+.+-.-...||+. -..-..|+.++.+.|++.-+
T Consensus 152 f~~AA~-ra~~aGfDgVEih~ahGyLl~-QFl--Sp~~N~RtD~yGGs-lenR~Rf~~eii~aIr~~vg 215 (370)
T cd02929 152 YVDAAL-RARDAGFDIVYVYAAHGYLPL-QFL--LPRYNKRTDEYGGS-LENRARFWRETLEDTKDAVG 215 (370)
T ss_pred HHHHHH-HHHHcCCCEEEEcccccchHH-Hhh--CccccCCccccCCC-hHhhhHHHHHHHHHHHHHcC
Confidence 444554 4566799999998885 2221 110 01111112234542 24457888899999988753
No 283
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=24.92 E-value=1.5e+02 Score=34.85 Aligned_cols=55 Identities=18% Similarity=0.158 Sum_probs=41.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhh
Q psy9001 1095 YSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDK 1169 (1351)
Q Consensus 1095 ~~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~ 1169 (1351)
..++..|+.+++++.-++++|++||.-+|--..- ..+...-..|++++++++++.
T Consensus 83 l~~~~~R~~fi~~iv~~~~~~~~dGidiD~E~~~--------------------~~d~~~~~~fl~eL~~~l~~~ 137 (298)
T cd06549 83 LADPSARAKFIANIAAYLERNQADGIVLDFEELP--------------------ADDLPKYVAFLSELRRRLPAQ 137 (298)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCCCEEEecCCCC--------------------hhHHHHHHHHHHHHHHHhhhc
Confidence 4678899999999999999999999999975311 001122466889999998775
No 284
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=24.90 E-value=63 Score=37.96 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEe
Q psy9001 1031 TPEQLKYLVDECHKAGLYVLLDV 1053 (1351)
Q Consensus 1031 t~edfK~LV~~aH~~GI~VILDV 1053 (1351)
++++++++.+-||++||.|.||-
T Consensus 143 s~~el~ai~~~a~~~gl~lhmDG 165 (290)
T PF01212_consen 143 SLEELRAISELAREHGLPLHMDG 165 (290)
T ss_dssp -HHHHHHHHHHHHHHT-EEEEEE
T ss_pred CHHHHHHHHHHHHhCceEEEEeh
Confidence 48999999999999999999994
No 285
>KOG2499|consensus
Probab=24.64 E-value=3.3e+02 Score=34.20 Aligned_cols=30 Identities=23% Similarity=0.312 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEee-cccccc
Q psy9001 318 TPEQLKYLVDECHKAGLYVLLDVV-HSHASK 347 (1351)
Q Consensus 318 ~~~efk~LV~~~H~~GI~VILDvV-~NH~~~ 347 (1351)
|.+|.+++|+-+.-|||+|+-.+- +.||+.
T Consensus 248 T~eDv~evV~yarlRGIRVlpEfD~PgHt~s 278 (542)
T KOG2499|consen 248 TREDVSEVVEYARLRGIRVLPEFDTPGHTGS 278 (542)
T ss_pred cHHHHHHHHHHHHhccceeeecccCCccccc
Confidence 679999999999999999999884 889876
No 286
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=24.60 E-value=1.6e+02 Score=34.84 Aligned_cols=59 Identities=14% Similarity=0.206 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCC-hhHHHHHHHHHHHHHhhC
Q psy9001 1096 SEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVD-TDALIYLMVANKFLHDKY 1170 (1351)
Q Consensus 1096 ~np~Vr~~lid~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d-~~~~~fl~~~~~~l~~~~ 1170 (1351)
.++..|+-+++++.-++++||+||.-+|.=.... . -+...+ ..-..|++++++++++..
T Consensus 88 ~~~~~R~~fi~s~~~~~~~~~~DGidiD~we~p~---------~-------~~~~~d~~~~~~~l~el~~~l~~~~ 147 (318)
T cd02876 88 NDEQEREKLIKLLVTTAKKNHFDGIVLEVWSQLA---------A-------YGVPDKRKELIQLVIHLGETLHSAN 147 (318)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCcEEEechhhhc---------c-------cCCHHHHHHHHHHHHHHHHHHhhcC
Confidence 5678999999999999999999999998311110 0 000112 224668888998887654
No 287
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=24.10 E-value=73 Score=40.33 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=17.7
Q ss_pred CCCCH-HHHHHhhhHHHHHcCCCcCceeEEEeeccc
Q psy9001 194 KCASY-EDFVRVVIPRIVKQGMAIPDKWIELLKKFK 228 (1351)
Q Consensus 194 ~~G~~-~gi~~~~L~yLk~LGvt~~~~~I~L~Pif~ 228 (1351)
+.|+| .++.+ .++.+++.|+.. ++|+|+++
T Consensus 13 GIGDfg~dl~~-~~d~~~~~G~~i----~qllpl~p 43 (496)
T PF02446_consen 13 GIGDFGDDLYQ-FIDWAAEAGQSI----WQLLPLNP 43 (496)
T ss_dssp SS--SSHHHHH-HHHHHHHCT--E----EE----S-
T ss_pred ceecHHHHHHH-HHHHHHHcCCCe----eccccccC
Confidence 68999 77655 599999999999 99999553
No 288
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=23.58 E-value=1.3e+02 Score=35.65 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=14.5
Q ss_pred HHHHHHcCCEEEEEeecccccc
Q psy9001 326 VDECHKAGLYVLLDVVHSHASK 347 (1351)
Q Consensus 326 V~~~H~~GI~VILDvV~NH~~~ 347 (1351)
.+++.++||.||+|+---+.+-
T Consensus 85 M~~~~~aGIYvi~Dl~~p~~sI 106 (314)
T PF03198_consen 85 MSAFADAGIYVILDLNTPNGSI 106 (314)
T ss_dssp HHHHHHTT-EEEEES-BTTBS-
T ss_pred HHHHHhCCCEEEEecCCCCccc
Confidence 3456779999999998775554
No 289
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=23.22 E-value=78 Score=36.33 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHcCCEEEEEeecc
Q psy9001 320 EQLKYLVDECHKAGLYVLLDVVHS 343 (1351)
Q Consensus 320 ~efk~LV~~~H~~GI~VILDvV~N 343 (1351)
.=++.+|+.||+.||+||...|=+
T Consensus 193 ~iv~~iv~la~~l~~~vvaEGVEt 216 (256)
T COG2200 193 AIVRAIVALAHKLGLTVVAEGVET 216 (256)
T ss_pred HHHHHHHHHHHHCCCEEEEeecCC
Confidence 459999999999999999887755
No 290
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=23.05 E-value=2e+02 Score=34.13 Aligned_cols=29 Identities=17% Similarity=0.247 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCcccccc
Q psy9001 383 SEIEVLRFLLSNLRWYLDEYQFDGFRFDG 411 (1351)
Q Consensus 383 ~~p~v~~~l~~~l~~W~~e~~vDGfR~D~ 411 (1351)
.+++.|+.+++++.-|++++++||+-+|-
T Consensus 105 ~~~~~r~~Fi~siv~~l~~~~fDGidiDw 133 (322)
T cd06548 105 ATEASRAKFADSAVDFIRKYGFDGIDIDW 133 (322)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEECC
Confidence 46888999999999999999999999884
No 291
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=22.41 E-value=1.3e+02 Score=35.65 Aligned_cols=59 Identities=14% Similarity=0.170 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCc-hHHHHHHHHHHHHHhhC
Q psy9001 383 SEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDT-DALIYLMVANKFLHDKY 457 (1351)
Q Consensus 383 ~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~f~~~~~~~v~~~~ 457 (1351)
++++.|+-+++++.-+++++|+||+-+|.=... + .. +...+. .-..|++++++++++..
T Consensus 88 ~~~~~R~~fi~s~~~~~~~~~~DGidiD~we~p-----~----~~-------~~~~d~~~~~~~l~el~~~l~~~~ 147 (318)
T cd02876 88 NDEQEREKLIKLLVTTAKKNHFDGIVLEVWSQL-----A----AY-------GVPDKRKELIQLVIHLGETLHSAN 147 (318)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCcEEEechhhh-----c----cc-------CCHHHHHHHHHHHHHHHHHHhhcC
Confidence 478889999999999999999999988831111 0 00 000111 22578899999887653
No 292
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=22.11 E-value=1.9e+02 Score=34.23 Aligned_cols=56 Identities=18% Similarity=0.256 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCchHHHHHHHHHHHHHhh
Q psy9001 383 SEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDK 456 (1351)
Q Consensus 383 ~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~ 456 (1351)
.+++.|+.+++++.-|+++++.||+-+|--..- .. + .....-..|++++++.+++.
T Consensus 87 ~~~~~r~~fi~~i~~~~~~~~~DGidiDwE~~~-------~~----------~-~d~~~~~~ll~~lr~~l~~~ 142 (334)
T smart00636 87 SDPASRKKFIDSIVSFLKKYGFDGIDIDWEYPG-------AR----------G-DDRENYTALLKELREALDKE 142 (334)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEECCcCCC-------CC----------c-cHHHHHHHHHHHHHHHHHHh
Confidence 467889999999999999999999999842211 00 0 00112357889999888764
No 293
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=22.02 E-value=3.9e+02 Score=32.74 Aligned_cols=118 Identities=11% Similarity=0.159 Sum_probs=54.7
Q ss_pred HHHHHHHHHcCCEEEEEeeccccccCCcCCcccCCCCCCcCcccCCCCCCCCCCCccCC-CCCHHHHHHHHHHHHHHHHH
Q psy9001 323 KYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFN-YSEIEVLRFLLSNLRWYLDE 401 (1351)
Q Consensus 323 k~LV~~~H~~GI~VILDvV~NH~~~~~~~~~~~f~g~~~~yy~~~~~~~~~~w~~~~ln-~~~p~v~~~l~~~l~~W~~e 401 (1351)
+.|+++|+++|+..++ .|....|.|+..+....-.......|. -.......||.++++++ ++
T Consensus 107 rwfL~~Ak~rGV~~f~----------------aFSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~-~~ 169 (384)
T PF14587_consen 107 RWFLKAAKERGVNIFE----------------AFSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHY-KK 169 (384)
T ss_dssp HHHHHHHHHTT---EE----------------EE-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHH-HC
T ss_pred HHHHHHHHHcCCCeEE----------------EeecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHH-Hh
Confidence 4578999999998654 111122233332221110011111222 22456778999999999 54
Q ss_pred cCCCccccccccccccccCCCCCCCCCCccccCCCcc-CchHHHHHHHHHHHHHhhCCCe-EEEEEc
Q psy9001 402 YQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNV-DTDALIYLMVANKFLHDKYPEI-ITIAED 466 (1351)
Q Consensus 402 ~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~f~~~~~~~v~~~~P~~-~~iaE~ 466 (1351)
.|+.||-++-+- ++.+.+....+-|-.. +.+...+++.|..+|++..... ++++|+
T Consensus 170 ---~GI~f~~IsP~N------EP~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~Ea 227 (384)
T PF14587_consen 170 ---WGINFDYISPFN------EPQWNWAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACEA 227 (384)
T ss_dssp ---TT--EEEEE--S-------TTS-GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEEE
T ss_pred ---cCCccceeCCcC------CCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecch
Confidence 577999877661 1222211111112222 2344578999999998887776 556664
No 294
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=21.84 E-value=3.5e+02 Score=31.90 Aligned_cols=127 Identities=13% Similarity=0.170 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCCC-CCCCCCCC---HHHHHHHHH
Q psy9001 1031 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWD-SRLFNYSE---IEVLRFLLS 1106 (1351)
Q Consensus 1031 t~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w~-~~dlN~~n---p~Vr~~lid 1106 (1351)
..+.+|++++++|+.|-++++-+ +|.+............ +. +......+. ..--..+. .++.+.+.+
T Consensus 75 ~~~~~~~~~~~vh~~g~~~~~Ql--~h~G~~~~~~~~~~~~-----~~--~s~~~~~~~~~~~~~mt~~ei~~~i~~~~~ 145 (327)
T cd02803 75 QIPGLRKLTEAVHAHGAKIFAQL--AHAGRQAQPNLTGGPP-----PA--PSAIPSPGGGEPPREMTKEEIEQIIEDFAA 145 (327)
T ss_pred HHHHHHHHHHHHHhCCCHhhHHh--hCCCcCCCCcCCCCCc-----cC--CCCCCCCCCCCCCCcCCHHHHHHHHHHHHH
Confidence 37899999999999999998775 6766543211110000 00 000000000 00011122 244445556
Q ss_pred HHHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhC
Q psy9001 1107 NLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKY 1170 (1351)
Q Consensus 1107 ~l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~ 1170 (1351)
+++...+ .|+||+-+-++..-+-.++- .+.+..-...+|+. -.....|+.++.+.+++..
T Consensus 146 aA~~a~~-aGfDgveih~~~gyL~~qFl--sp~~n~R~d~yGgs-~enr~r~~~eii~avr~~~ 205 (327)
T cd02803 146 AARRAKE-AGFDGVEIHGAHGYLLSQFL--SPYTNKRTDEYGGS-LENRARFLLEIVAAVREAV 205 (327)
T ss_pred HHHHHHH-cCCCEEEEcchhhhHHHHhc--CccccCCCcccCCC-HHHHHHHHHHHHHHHHHHc
Confidence 6666655 69999999987321111110 00001112234443 2345677888888887764
No 295
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=21.42 E-value=80 Score=37.10 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEee
Q psy9001 318 TPEQLKYLVDECHKAGLYVLLDVV 341 (1351)
Q Consensus 318 ~~~efk~LV~~~H~~GI~VILDvV 341 (1351)
++++++++.+.||++||.|.||..
T Consensus 143 s~~el~ai~~~a~~~gl~lhmDGA 166 (290)
T PF01212_consen 143 SLEELRAISELAREHGLPLHMDGA 166 (290)
T ss_dssp -HHHHHHHHHHHHHHT-EEEEEET
T ss_pred CHHHHHHHHHHHHhCceEEEEehh
Confidence 489999999999999999999986
No 296
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=20.51 E-value=1.7e+02 Score=34.32 Aligned_cols=54 Identities=19% Similarity=0.223 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCccccccccccccccCCCCCCCCCCccccCCCccCc-hHHHHHHHHHHHHHhh
Q psy9001 382 YSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDT-DALIYLMVANKFLHDK 456 (1351)
Q Consensus 382 ~~~p~v~~~l~~~l~~W~~e~~vDGfR~D~a~~~~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~f~~~~~~~v~~~ 456 (1351)
.+++..|+.+++++..+++++++||+-+|.-. + ...+. .-..|++++++++++.
T Consensus 83 l~~~~~R~~fi~~iv~~~~~~~~dGidiD~E~-~--------------------~~~d~~~~~~fl~eL~~~l~~~ 137 (298)
T cd06549 83 LADPSARAKFIANIAAYLERNQADGIVLDFEE-L--------------------PADDLPKYVAFLSELRRRLPAQ 137 (298)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCCCEEEecCC-C--------------------ChhHHHHHHHHHHHHHHHhhhc
Confidence 35788899999999999999999999998532 1 00011 2357999999998875
No 297
>PF15640 Tox-MPTase4: Metallopeptidase toxin 4
Probab=20.47 E-value=85 Score=32.17 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEE
Q psy9001 1028 LFGTPEQLKYLVDECHKAGLYVLLD 1052 (1351)
Q Consensus 1028 ~yGt~edfK~LV~~aH~~GI~VILD 1052 (1351)
++-+..|+|.+-+.+.++||+|++|
T Consensus 17 ri~s~~d~k~~kk~m~~~gIkV~Id 41 (132)
T PF15640_consen 17 RIMSVKDIKNFKKEMGKRGIKVKID 41 (132)
T ss_pred EeeeHHHHHHHHHHHHhCCcEEEEC
Confidence 3677999999999999999999999
No 298
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=20.19 E-value=1.6e+02 Score=35.81 Aligned_cols=34 Identities=24% Similarity=0.255 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCE-EEEEeeccccccC
Q psy9001 315 LFGTPEQLKYLVDECHKAGLY-VLLDVVHSHASKN 348 (1351)
Q Consensus 315 ~~G~~~efk~LV~~~H~~GI~-VILDvV~NH~~~~ 348 (1351)
+..+.++..+.++.+++.|+. |.+|++++..+..
T Consensus 139 R~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPgqt 173 (375)
T PRK05628 139 RTHTPGRAVAAAREARAAGFEHVNLDLIYGTPGES 173 (375)
T ss_pred CCCCHHHHHHHHHHHHHcCCCcEEEEEeccCCCCC
Confidence 445788999999999999999 9999999875543
No 299
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=20.10 E-value=1.2e+03 Score=28.03 Aligned_cols=131 Identities=15% Similarity=0.170 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccccCCccccCcCCCCCCCccccCCCCCCCCCC--CCCCCCCCC-HHHHHHHHHH
Q psy9001 1031 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW--DSRLFNYSE-IEVLRFLLSN 1107 (1351)
Q Consensus 1031 t~edfK~LV~~aH~~GI~VILDVV~NHts~~~~~~l~~~dg~~~~yf~~~~~g~~~~w--~~~dlN~~n-p~Vr~~lid~ 1107 (1351)
-.+.+|+|++++|+.|=++++-+ +|.+......... +.. . .....-...... ....+.-+. .++.+.+.++
T Consensus 76 ~i~~~~~l~~~vh~~G~~i~~QL--~h~G~~~~~~~~~--~~~-~-~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~a 149 (353)
T cd04735 76 DIPGLRKLAQAIKSKGAKAILQI--FHAGRMANPALVP--GGD-V-VSPSAIAAFRPGAHTPRELTHEEIEDIIDAFGEA 149 (353)
T ss_pred hhHHHHHHHHHHHhCCCeEEEEe--cCCCCCCCccccC--CCc-e-ecCCCCcccCCCCCCCccCCHHHHHHHHHHHHHH
Confidence 37899999999999999998665 6766543111100 000 0 000000000000 011111110 2344444455
Q ss_pred HHHHHHHhCCCeEEEcCcccccccCCCCCCCCCCCcccccCCcCChhHHHHHHHHHHHHHhhCC
Q psy9001 1108 LRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYP 1171 (1351)
Q Consensus 1108 l~yWl~eygVDGFRfD~a~~m~~~~~g~~~~~~~~~~~~~g~~~d~~~~~fl~~~~~~l~~~~P 1171 (1351)
.+- +.+.|+||.-+-++.--+-.++. .+..-.-...||+. -.....|+.++.+.|++.-+
T Consensus 150 A~~-a~~aGfDgVeih~ahGyLl~qFl--sp~~N~R~D~yGGs-lenR~r~~~eii~~vr~~vg 209 (353)
T cd04735 150 TRR-AIEAGFDGVEIHGANGYLIQQFF--SPHSNRRTDEWGGS-LENRMRFPLAVVKAVQEVID 209 (353)
T ss_pred HHH-HHHcCCCEEEEccccchHHHHhc--CCccCCCCcccCCc-HHHHHHHHHHHHHHHHHHhc
Confidence 555 45579999999877422111111 11111112335554 34567888899999887643
Done!