RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9001
(1351 letters)
>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A
{Oryza sativa japonica group} PDB: 3amk_A
Length = 755
Score = 315 bits (808), Expect = 2e-92
Identities = 113/177 (63%), Positives = 135/177 (76%), Gaps = 3/177 (1%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFD---GTQACFFHDGPRGTH 1085
GTPE LKYLVD+ H GL VL+DVVHSHAS NV DGLN +D T +FH G RG H
Sbjct: 247 SGTPEDLKYLVDKAHSLGLRVLMDVVHSHASNNVTDGLNGYDVGQNTHESYFHTGDRGYH 306
Query: 1086 PLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDE 1145
LWDSRLFNY+ EVLRFLLSNLR++++E+ FDGFRFDGVTSMLYH+HG +GF+G+Y E
Sbjct: 307 KLWDSRLFNYANWEVLRFLLSNLRYWMDEFMFDGFRFDGVTSMLYHHHGINKGFTGNYKE 366
Query: 1146 YFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLG 1202
YF L+ D DA++Y+M+AN +H PE +AEDVSGMP CRPV EGG GFD+RL
Sbjct: 367 YFSLDTDVDAIVYMMLANHLMHKLLPEATIVAEDVSGMPVLCRPVDEGGVGFDFRLA 423
Score = 315 bits (808), Expect = 2e-92
Identities = 114/176 (64%), Positives = 135/176 (76%), Gaps = 3/176 (1%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFD---GTQACFFHDGPRGTH 372
GTPE LKYLVD+ H GL VL+DVVHSHAS NV DGLN +D T +FH G RG H
Sbjct: 247 SGTPEDLKYLVDKAHSLGLRVLMDVVHSHASNNVTDGLNGYDVGQNTHESYFHTGDRGYH 306
Query: 373 PLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDE 432
LWDSRLFNY+ EVLRFLLSNLR+++DE+ FDGFRFDGVTSMLYH+HG +GF+G+Y E
Sbjct: 307 KLWDSRLFNYANWEVLRFLLSNLRYWMDEFMFDGFRFDGVTSMLYHHHGINKGFTGNYKE 366
Query: 433 YFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRL 488
YF L+ D DA++Y+M+AN +H PE +AEDVSGMP CRPV EGG GFD+RL
Sbjct: 367 YFSLDTDVDAIVYMMLANHLMHKLLPEATIVAEDVSGMPVLCRPVDEGGVGFDFRL 422
Score = 142 bits (359), Expect = 1e-34
Identities = 46/143 (32%), Positives = 73/143 (51%), Gaps = 8/143 (5%)
Query: 81 GDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWA 140
G+FNNWN + +K FG W + + +G + H S+VK R+ G +DR+ W
Sbjct: 83 GEFNNWNGAKHKMEKDKFGIWSIKISH-VNGKPAIPHNSKVKFRFRHGGGAWVDRIPAWI 141
Query: 141 TYVTEPP-VVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYE 199
Y T G Y+ W+P +++ + +P KPD +IYE+HVG+ +E + ++Y
Sbjct: 142 RYATFDASKFGAPYDGVHWDPPACERYVFKHPRPPKPDAPRIYEAHVGMSGEEPEVSTYR 201
Query: 200 DFVRVVIPRIVKQG------MAI 216
+F V+PRI MAI
Sbjct: 202 EFADNVLPRIRANNYNTVQLMAI 224
Score = 135 bits (341), Expect = 2e-32
Identities = 52/145 (35%), Positives = 69/145 (47%), Gaps = 32/145 (22%)
Query: 502 FDAAMNTTEERFKWLSADPGYVSTKHEGDKVIIFERAGLLFAFNFNGTQSFTDYRYCSTQ 561
FD AMN EE F +LS+ VS +E DKVI+FER L+F FNF+ +++ Y
Sbjct: 570 FDQAMNALEEEFSFLSSSKQIVSDMNEKDKVIVFERGDLVFVFNFHPNKTYKGY------ 623
Query: 562 SYSTHNTWTWRGSISKLHRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPE---- 617
+VG + GKY+V LDSD FGG R+ + T PE
Sbjct: 624 ------------------KVGCDLPGKYRVALDSDALVFGGHGRVGHDVDHFTSPEGMPG 665
Query: 618 ----PWNNRRNSIKLYLPTRTGLIL 638
+NNR NS K+ P RT +
Sbjct: 666 VPETNFNNRPNSFKVLSPPRTCVAY 690
Score = 134 bits (338), Expect = 5e-32
Identities = 53/83 (63%), Positives = 62/83 (74%)
Query: 211 KQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFW 270
+ MAIPD+WI+ LK +D W+M IV TLTNRRY EK +AYAESHDQ++VGDKTIAF
Sbjct: 421 RLAMAIPDRWIDYLKNKEDRKWSMSEIVQTLTNRRYTEKCIAYAESHDQSIVGDKTIAFL 480
Query: 271 LMDKEMYTHMSTLSDPSLIIDRA 293
LMDKEMYT MS L S I+R
Sbjct: 481 LMDKEMYTGMSDLQPASPTINRG 503
Score = 82.4 bits (204), Expect = 6e-16
Identities = 24/97 (24%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 830 YQYEMKRRYGLMVNFLEQLSPWATYVTEPP-VVGHAYEQRIWNPKPQDKHKWTSSKPKKP 888
++ + G +++++ W Y T G Y+ W+P +++ + +P KP
Sbjct: 122 VKFRFRHGGG---AWVDRIPAWIRYATFDASKFGAPYDGVHWDPPACERYVFKHPRPPKP 178
Query: 889 ENLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQG 925
+ +IYE+HVG+ +E + ++Y +F V+PRI
Sbjct: 179 DAPRIYEAHVGMSGEEPEVSTYREFADNVLPRIRANN 215
Score = 80.1 bits (198), Expect = 3e-15
Identities = 26/32 (81%), Positives = 28/32 (87%)
Query: 723 GYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 754
YN VQLMAIMEH+YYASFGY VT+FFA SSR
Sbjct: 215 NYNTVQLMAIMEHSYYASFGYHVTNFFAVSSR 246
Score = 77.4 bits (191), Expect = 2e-14
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 1214 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPE--------PWNNRRNSIKLYLP 1265
+VG + GKY+V LDSD FGG R+ + T PE +NNR NS K+ P
Sbjct: 624 KVGCDLPGKYRVALDSDALVFGGHGRVGHDVDHFTSPEGMPGVPETNFNNRPNSFKVLSP 683
Query: 1266 TRTGII 1271
RT +
Sbjct: 684 PRTCVA 689
Score = 69.3 bits (170), Expect = 5e-12
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 955 GDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDR 1009
G+FNNWN + +K FG W + + +G + H S+VK R+ G +DR
Sbjct: 83 GEFNNWNGAKHKMEKDKFGIWSIKISH-VNGKPAIPHNSKVKFRFRHGGGAWVDR 136
Score = 50.5 bits (121), Expect = 3e-06
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 685 GGIEKFTTSYNKYGIHVQADNSVRCFEWAPSAQQLYLTG 723
GG+E+F+ Y K+GI+ D + EWAP+AQ+ L G
Sbjct: 46 GGLEEFSKGYLKFGINTV-DGATIYREWAPAAQEAQLIG 83
Score = 45.1 bits (107), Expect = 2e-04
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 52 FGTPEQLKYLVDECHKAGLLCFMHVV 77
GTPE LKYLVD+ H GL M VV
Sbjct: 247 SGTPEDLKYLVDKAHSLGLRVLMDVV 272
Score = 42.0 bits (99), Expect = 0.001
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 14 FGTPEQLKYLVDECHKAGLF 33
GTPE LKYLVD+ H GL
Sbjct: 247 SGTPEDLKYLVDKAHSLGLR 266
Score = 42.0 bits (99), Expect = 0.001
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 33 FGTPEQLKYLVDECHKAGLF 52
GTPE LKYLVD+ H GL
Sbjct: 247 SGTPEDLKYLVDKAHSLGLR 266
Score = 38.1 bits (89), Expect = 0.021
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 770 PELHKLLERDPYLNPYQYEMKRRYGLMVNFLEQFEKHE 807
+ + + DP L ++ R ++ EKHE
Sbjct: 8 VDHLPIYDLDPKLEEFKDHFNYRIKRYLDQKCLIEKHE 45
Score = 32.7 bits (75), Expect = 0.87
Identities = 4/34 (11%), Positives = 12/34 (35%)
Query: 815 PELHKLLERDPYLNPYQYEMKRRYGLMVNFLEQL 848
+ + + DP L ++ R ++ +
Sbjct: 8 VDHLPIYDLDPKLEEFKDHFNYRIKRYLDQKCLI 41
>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich,
transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2
b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*
Length = 617
Score = 151 bits (384), Expect = 4e-38
Identities = 61/176 (34%), Positives = 91/176 (51%), Gaps = 13/176 (7%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPR-GTHPL 1087
FGT + +Y +D H AGL V+LD V H + L EFDGT + H PR G H
Sbjct: 201 FGTRDDFRYFIDAAHAAGLNVILDWVPGHFPTDD-FALAEFDGT-NLYEHSDPREGYHQD 258
Query: 1088 WDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEY- 1146
W++ ++NY EV FL+ N +++E + D R D V SM+Y ++ EG E+
Sbjct: 259 WNTLIYNYGRREVSNFLVGNALYWIERFGIDALRVDAVASMIYRDYSRKEG------EWI 312
Query: 1147 ---FGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDY 1199
FG + +A+ +L N+ L ++ +T+AE+ + P RP GG GF Y
Sbjct: 313 PNEFGGRENLEAIEFLRNTNRILGEQVSGAVTMAEESTDFPGVSRPQDMGGLGFWY 368
Score = 151 bits (384), Expect = 5e-38
Identities = 60/176 (34%), Positives = 91/176 (51%), Gaps = 13/176 (7%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPR-GTHPL 374
FGT + +Y +D H AGL V+LD V H + L EFDGT + H PR G H
Sbjct: 201 FGTRDDFRYFIDAAHAAGLNVILDWVPGHFPTDD-FALAEFDGT-NLYEHSDPREGYHQD 258
Query: 375 WDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEY- 433
W++ ++NY EV FL+ N ++++ + D R D V SM+Y ++ EG E+
Sbjct: 259 WNTLIYNYGRREVSNFLVGNALYWIERFGIDALRVDAVASMIYRDYSRKEG------EWI 312
Query: 434 ---FGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDY 486
FG + +A+ +L N+ L ++ +T+AE+ + P RP GG GF Y
Sbjct: 313 PNEFGGRENLEAIEFLRNTNRILGEQVSGAVTMAEESTDFPGVSRPQDMGGLGFWY 368
Score = 58.0 bits (141), Expect = 1e-08
Identities = 32/129 (24%), Positives = 49/129 (37%), Gaps = 38/129 (29%)
Query: 508 TTEERFKWLSADPGYVSTKHEGDKVIIFERAG-----LLFAFNFNGTQSFTDYRYCSTQS 562
F+WL D S V+IF R ++ A NF DYR
Sbjct: 510 FDPYGFEWLVVDDKERS-------VLIFVRRDKEGNEIIVASNFTP-VPRHDYR------ 555
Query: 563 YSTHNTWTWRGSISKLHRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNR 622
G+ Q GK++ +L++D H+ G N + GTV + + R
Sbjct: 556 ------------------FGINQPGKWREILNTDSMHYHGSNAGNGGTV-HSDEIASHGR 596
Query: 623 RNSIKLYLP 631
++S+ L LP
Sbjct: 597 QHSLSLTLP 605
Score = 56.4 bits (137), Expect = 4e-08
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 1214 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLP 1265
R G+ Q GK++ +L++D H+ G N + GTV + + R++S+ L LP
Sbjct: 555 RFGINQPGKWREILNTDSMHYHGSNAGNGGTV-HSDEIASHGRQHSLSLTLP 605
Score = 52.2 bits (126), Expect = 9e-07
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 716 AQQL--YLT--GYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 754
A QL Y G+ ++L+ I EH + S+GYQ T +A + R
Sbjct: 158 ADQLVPYAKWMGFTHLELLPINEHPFDGSWGYQPTGLYAPTRR 200
Score = 49.5 bits (119), Expect = 7e-06
Identities = 26/116 (22%), Positives = 42/116 (36%), Gaps = 19/116 (16%)
Query: 77 VCAAGDFNNWNREEFAYKKL-DFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDR 135
V G FN W+ + + G WEL +P +G K + + +G+L +
Sbjct: 39 VSVVGQFNYWDGRRHPMRLRKESGIWELFIPGAHNGQL-------YKYEMIDANGNLRLK 91
Query: 136 LSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLK----IYESHVG 187
P+A P A I + + + KK + IYE H+G
Sbjct: 92 SDPYAFEAQMRP--ETA--SLICGL---PEKVVQTEERKKANQFDAPISIYEVHLG 140
Score = 39.5 bits (93), Expect = 0.008
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 14 FGTPEQLKYLVDECHKAGL 32
FGT + +Y +D H AGL
Sbjct: 201 FGTRDDFRYFIDAAHAAGL 219
Score = 39.5 bits (93), Expect = 0.008
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 33 FGTPEQLKYLVDECHKAGL 51
FGT + +Y +D H AGL
Sbjct: 201 FGTRDDFRYFIDAAHAAGL 219
Score = 39.5 bits (93), Expect = 0.008
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 52 FGTPEQLKYLVDECHKAGL 70
FGT + +Y +D H AGL
Sbjct: 201 FGTRDDFRYFIDAAHAAGL 219
Score = 34.1 bits (79), Expect = 0.36
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 8/44 (18%)
Query: 914 VRVVIPRIVKQGDFNNWNREEFAYKKL-DFGKWELVLPPNPDGD 956
V VV G FN W+ + + G WEL +P +G
Sbjct: 39 VSVV-------GQFNYWDGRRHPMRLRKESGIWELFIPGAHNGQ 75
Score = 34.1 bits (79), Expect = 0.39
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 8/56 (14%)
Query: 955 GDFNNWNREEFAYKKL-DFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDR 1009
G FN W+ + + G WEL +P +G K + + +G+L +
Sbjct: 43 GQFNYWDGRRHPMRLRKESGIWELFIPGAHNGQL-------YKYEMIDANGNLRLK 91
>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV,
mesophilic human pathogen, RV1326C gene, glycosyl
transferase; 2.33A {Mycobacterium tuberculosis}
Length = 722
Score = 152 bits (385), Expect = 8e-38
Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 13/176 (7%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPR-GTHPL 1087
FGTP+ + LVD H+AG+ V++D V +H K+ L FDGT + H P+ G
Sbjct: 309 FGTPDDFRALVDALHQAGIGVIVDWVPAHFPKDA-WALGRFDGT-PLYEHSDPKRGEQLD 366
Query: 1088 WDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEY- 1146
W + +F++ EV FL++N ++L+E+ DG R D V SMLY ++ EG +
Sbjct: 367 WGTYVFDFGRPEVRNFLVANALYWLQEFHIDGLRVDAVASMLYLDYSRPEG------GWT 420
Query: 1147 ---FGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDY 1199
G + +A+ +L N H P I+TIAE+ + RP GG GF
Sbjct: 421 PNVHGGRENLEAVQFLQEMNATAHKVAPGIVTIAEESTPWSGVTRPTNIGGLGFSM 476
Score = 151 bits (384), Expect = 9e-38
Identities = 60/176 (34%), Positives = 89/176 (50%), Gaps = 13/176 (7%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPR-GTHPL 374
FGTP+ + LVD H+AG+ V++D V +H K+ L FDGT + H P+ G
Sbjct: 309 FGTPDDFRALVDALHQAGIGVIVDWVPAHFPKDA-WALGRFDGT-PLYEHSDPKRGEQLD 366
Query: 375 WDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEY- 433
W + +F++ EV FL++N ++L E+ DG R D V SMLY ++ EG +
Sbjct: 367 WGTYVFDFGRPEVRNFLVANALYWLQEFHIDGLRVDAVASMLYLDYSRPEG------GWT 420
Query: 434 ---FGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDY 486
G + +A+ +L N H P I+TIAE+ + RP GG GF
Sbjct: 421 PNVHGGRENLEAVQFLQEMNATAHKVAPGIVTIAEESTPWSGVTRPTNIGGLGFSM 476
Score = 58.4 bits (142), Expect = 1e-08
Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 38/140 (27%)
Query: 505 AMNTTEERFKWLSADPGYVSTKHEGDKVIIFERAG-----LLFAFNFNGTQSFTDYRYCS 559
+++TT E + W+ A+ + V+ F R G L FNF G DYR
Sbjct: 614 SLDTTPEGYSWIDANDSANN-------VLSFMRYGSDGSVLACVFNFAG-AEHRDYR--- 662
Query: 560 TQSYSTHNTWTWRGSISKLHRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPW 619
+G+ +AG+++ VL++D + + G + G V + +PW
Sbjct: 663 ---------------------LGLPRAGRWREVLNTDATIYHGSGIGNLGGV-DATDDPW 700
Query: 620 NNRRNSIKLYLPTRTGLILT 639
+ R S L LP + L LT
Sbjct: 701 HGRPASAVLVLPPTSALWLT 720
Score = 56.9 bits (138), Expect = 4e-08
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 1214 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLP 1265
R+G+ +AG+++ VL++D + + G + G V + +PW+ R S L LP
Sbjct: 662 RLGLPRAGRWREVLNTDATIYHGSGIGNLGGV-DATDDPWHGRPASAVLVLP 712
Score = 53.4 bits (129), Expect = 4e-07
Identities = 18/43 (41%), Positives = 30/43 (69%), Gaps = 4/43 (9%)
Query: 716 AQQL--YLT--GYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 754
A++L Y+ G+ V+L+ + EH + S+GYQVTS++A +SR
Sbjct: 266 ARELTDYIVDQGFTHVELLPVAEHPFAGSWGYQVTSYYAPTSR 308
Score = 50.3 bits (121), Expect = 4e-06
Identities = 30/117 (25%), Positives = 39/117 (33%), Gaps = 18/117 (15%)
Query: 77 VCAAGDFNNWNREEFAYKKL-DFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDR 135
V G+FN WN E + L G WEL P P K V G + DR
Sbjct: 150 VSLIGEFNGWNGHEAPMRVLGPSGVWELFWPDFPCDGL-------YKFRVHGADGVVTDR 202
Query: 136 LSPWATYVTEPP-----VVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVG 187
P+A PP V Y W + + + + YE H+G
Sbjct: 203 ADPFAFGTEVPPQTASRVTSSDYT---WGDDDWMAGRALRNPVNEA--MSTYEVHLG 254
Score = 39.5 bits (93), Expect = 0.009
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 14 FGTPEQLKYLVDECHKAGL 32
FGTP+ + LVD H+AG+
Sbjct: 309 FGTPDDFRALVDALHQAGI 327
Score = 39.5 bits (93), Expect = 0.009
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 33 FGTPEQLKYLVDECHKAGL 51
FGTP+ + LVD H+AG+
Sbjct: 309 FGTPDDFRALVDALHQAGI 327
Score = 39.5 bits (93), Expect = 0.009
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 52 FGTPEQLKYLVDECHKAGL 70
FGTP+ + LVD H+AG+
Sbjct: 309 FGTPDDFRALVDALHQAGI 327
Score = 33.8 bits (78), Expect = 0.44
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 8/44 (18%)
Query: 914 VRVVIPRIVKQGDFNNWNREEFAYKKL-DFGKWELVLPPNPDGD 956
V ++ G+FN WN E + L G WEL P P
Sbjct: 150 VSLI-------GEFNGWNGHEAPMRVLGPSGVWELFWPDFPCDG 186
Score = 33.8 bits (78), Expect = 0.47
Identities = 18/56 (32%), Positives = 21/56 (37%), Gaps = 8/56 (14%)
Query: 955 GDFNNWNREEFAYKKL-DFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDR 1009
G+FN WN E + L G WEL P P K V G + DR
Sbjct: 154 GEFNGWNGHEAPMRVLGPSGVWELFWPDFPCDGL-------YKFRVHGADGVVTDR 202
>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase,
protein-carbohydrate complex, desiccation resistance;
HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP:
b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A*
2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*
Length = 602
Score = 108 bits (272), Expect = 2e-24
Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 14/106 (13%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSH--ASKNVLDGLNEFDGTQACFFHDGPRGTHP 1086
+G PE L LVD H+ GL V LDVV++H S N L+ + + +F D
Sbjct: 189 YGRPEDLMALVDAAHRLGLGVFLDVVYNHFGPSGN---YLSSYAPS---YFTDRF---SS 239
Query: 1087 LWDSRLFNYSEIEVLRFLLSN-LRWYLEEYQFDGFRFDGVTSMLYH 1131
W +Y+E + R++ N W L +Y FDG R D M
Sbjct: 240 AWGM-GLDYAEPHMRRYVTGNARMW-LRDYHFDGLRLDATPYMTDD 283
Score = 108 bits (271), Expect = 4e-24
Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 14/106 (13%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSH--ASKNVLDGLNEFDGTQACFFHDGPRGTHP 373
+G PE L LVD H+ GL V LDVV++H S N L+ + + +F D
Sbjct: 189 YGRPEDLMALVDAAHRLGLGVFLDVVYNHFGPSGN---YLSSYAPS---YFTDRF---SS 239
Query: 374 LWDSRLFNYSEIEVLRFLLSN-LRWYLDEYQFDGFRFDGVTSMLYH 418
W +Y+E + R++ N W L +Y FDG R D M
Sbjct: 240 AWGM-GLDYAEPHMRRYVTGNARMW-LRDYHFDGLRLDATPYMTDD 283
Score = 45.0 bits (107), Expect = 2e-04
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 716 AQQL-YL--TGYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 754
A++L YL G A+Q+M + +GY +F+A +
Sbjct: 147 AEKLPYLKELGVTAIQVMPLAAFDGQRGWGYDGAAFYAPYAP 188
Score = 43.5 bits (103), Expect = 5e-04
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 52 FGTPEQLKYLVDECHKAGLLCFMHVVCA 79
+G PE L LVD H+ GL F+ VV
Sbjct: 189 YGRPEDLMALVDAAHRLGLGVFLDVVYN 216
Score = 42.3 bits (100), Expect = 0.001
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 13 SFGTPEQLKYLVDECHKAGL 32
+G PE L LVD H+ GL
Sbjct: 188 PYGRPEDLMALVDAAHRLGL 207
Score = 41.5 bits (98), Expect = 0.002
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 33 FGTPEQLKYLVDECHKAGL 51
+G PE L LVD H+ GL
Sbjct: 189 YGRPEDLMALVDAAHRLGL 207
>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center
for structural genomics of infectious diseases, unknown
function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica
subsp}
Length = 618
Score = 106 bits (267), Expect = 1e-23
Identities = 40/177 (22%), Positives = 62/177 (35%), Gaps = 39/177 (22%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG--LNEFDGTQACFFHDGPRGTHP 1086
+GTP+ K +D H GL V+LD+V +H +G L FFH
Sbjct: 199 YGTPDDFKAFIDAAHGYGLSVVLDIVLNHFGP---EGNYLPLLAPA---FFHKER---MT 249
Query: 1087 LWDSRLFNYSEIEVLRFLLSN-LRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDE 1145
W + Y V R+++ L W L EY DG RFD + +
Sbjct: 250 PWGN-GIAYDVDAVRRYIIEAPLYW-LTEYHLDGLRFDAIDQI----------------- 290
Query: 1146 YFGLNVDTDALIYLMVANKFLHDKYPE--IITIAEDVSGMPASCRPVTEG-GTGFDY 1199
D+ A L+ + + + + I ED + + +G F
Sbjct: 291 -----EDSSARHVLVEIAQRIREDITDRPIHLTTEDSRNIISLHPRDQDGNAPLFTA 342
Score = 106 bits (266), Expect = 2e-23
Identities = 40/177 (22%), Positives = 62/177 (35%), Gaps = 39/177 (22%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG--LNEFDGTQACFFHDGPRGTHP 373
+GTP+ K +D H GL V+LD+V +H +G L FFH
Sbjct: 199 YGTPDDFKAFIDAAHGYGLSVVLDIVLNHFGP---EGNYLPLLAPA---FFHKER---MT 249
Query: 374 LWDSRLFNYSEIEVLRFLLSN-LRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDE 432
W + Y V R+++ L W L EY DG RFD + +
Sbjct: 250 PWGN-GIAYDVDAVRRYIIEAPLYW-LTEYHLDGLRFDAIDQI----------------- 290
Query: 433 YFGLNVDTDALIYLMVANKFLHDKYPE--IITIAEDVSGMPASCRPVTEG-GTGFDY 486
D+ A L+ + + + + I ED + + +G F
Sbjct: 291 -----EDSSARHVLVEIAQRIREDITDRPIHLTTEDSRNIISLHPRDQDGNAPLFTA 342
Score = 45.4 bits (108), Expect = 1e-04
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 716 AQQL-YLT--GYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 754
+L YL G +++M + + +GY +A S
Sbjct: 157 IAKLPYLAELGVTVIEVMPVAQFGGERGWGYDGVLLYAPHSA 198
Score = 43.0 bits (102), Expect = 6e-04
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 52 FGTPEQLKYLVDECHKAGLLCFMHVVCA 79
+GTP+ K +D H GL + +V
Sbjct: 199 YGTPDDFKAFIDAAHGYGLSVVLDIVLN 226
Score = 42.3 bits (100), Expect = 0.001
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 13 SFGTPEQLKYLVDECHKAGL 32
++GTP+ K +D H GL
Sbjct: 198 AYGTPDDFKAFIDAAHGYGL 217
Score = 41.1 bits (97), Expect = 0.002
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 33 FGTPEQLKYLVDECHKAGL 51
+GTP+ K +D H GL
Sbjct: 199 YGTPDDFKAFIDAAHGYGL 217
>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel,
alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus
solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A*
3vgh_A* 3vgg_A* 1eha_A
Length = 558
Score = 99.3 bits (248), Expect = 2e-21
Identities = 47/175 (26%), Positives = 68/175 (38%), Gaps = 38/175 (21%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSH--ASKNVLDGLNEFDGTQACFFHDGPRGTHP 1086
+G PE + LVDE HK GL V+LDVV++H N + + +F + P
Sbjct: 164 YGGPEGFRKLVDEAHKKGLGVILDVVYNHVGPEGN---YMVKLGP----YFSQ--KYKTP 214
Query: 1087 LWDSRLFNYSE-IEVLRFLLSN-LRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYD 1144
+ F+ +E EV +F+L N W ++EY DGFR V +++
Sbjct: 215 WGLTFNFDDAESDEVRKFILENVEYW-IKEYNVDGFRLSAVHAII--------------- 258
Query: 1145 EYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDY 1199
DT L +H I IAE P P + G D
Sbjct: 259 -------DTSPKHILEEIADVVHK--YNRIVIAESDLNDPRVVNPKEKCGYNIDA 304
Score = 98.9 bits (247), Expect = 2e-21
Identities = 47/175 (26%), Positives = 67/175 (38%), Gaps = 38/175 (21%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSH--ASKNVLDGLNEFDGTQACFFHDGPRGTHP 373
+G PE + LVDE HK GL V+LDVV++H N + + +F + P
Sbjct: 164 YGGPEGFRKLVDEAHKKGLGVILDVVYNHVGPEGN---YMVKLGP----YFSQ--KYKTP 214
Query: 374 LWDSRLFNYSE-IEVLRFLLSN-LRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYD 431
+ F+ +E EV +F+L N W + EY DGFR V +++
Sbjct: 215 WGLTFNFDDAESDEVRKFILENVEYW-IKEYNVDGFRLSAVHAII--------------- 258
Query: 432 EYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDY 486
DT L +H I IAE P P + G D
Sbjct: 259 -------DTSPKHILEEIADVVHK--YNRIVIAESDLNDPRVVNPKEKCGYNIDA 304
Score = 45.7 bits (109), Expect = 9e-05
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 716 AQQL-YL--TGYNAVQLMAIMEHAYYASFGYQVTSFFAASSR 754
++L YL G A+++M I + +GY +A +
Sbjct: 122 IRKLDYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNS 163
Score = 43.0 bits (102), Expect = 7e-04
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 52 FGTPEQLKYLVDECHKAGLLCFMHVVCA 79
+G PE + LVDE HK GL + VV
Sbjct: 164 YGGPEGFRKLVDEAHKKGLGVILDVVYN 191
Score = 41.9 bits (99), Expect = 0.001
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 13 SFGTPEQLKYLVDECHKAGL 32
S+G PE + LVDE HK GL
Sbjct: 163 SYGGPEGFRKLVDEAHKKGL 182
Score = 40.7 bits (96), Expect = 0.003
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 33 FGTPEQLKYLVDECHKAGL 51
+G PE + LVDE HK GL
Sbjct: 164 YGGPEGFRKLVDEAHKKGL 182
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet;
1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB:
1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A
1qpk_A*
Length = 527
Score = 68.2 bits (166), Expect = 9e-12
Identities = 30/187 (16%), Positives = 45/187 (24%), Gaps = 39/187 (20%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSH---ASKNVLDGLNEFDGTQACFFHDGPRGTH 1085
+G+ QL+ AG+ VL DVV +H + L G D +
Sbjct: 89 YGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQGFWRNDCADPGNYPN 148
Query: 1086 PLWDSRLF-------NYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEG 1138
D F N +V +Y GFRFD V
Sbjct: 149 DCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFDFV------------- 195
Query: 1139 FSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFD 1198
Y N ++ D + E G +
Sbjct: 196 --RGYAPER--------------VNSWMTDSADNSFCVGELWKGPSEYPNWDWRNTASWQ 239
Query: 1199 YRLGQYL 1205
+ +
Sbjct: 240 QIIKDWS 246
Score = 68.2 bits (166), Expect = 1e-11
Identities = 35/201 (17%), Positives = 52/201 (25%), Gaps = 41/201 (20%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSH---ASKNVLDGLNEFDGTQACFFHDGPRGTH 372
+G+ QL+ AG+ VL DVV +H + L G D +
Sbjct: 89 YGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQGFWRNDCADPGNYPN 148
Query: 373 PLWDSRLF-------NYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEG 425
D F N +V +Y GFRFD V
Sbjct: 149 DCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFDFV------------- 195
Query: 426 FSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFD 485
Y N ++ D + E G +
Sbjct: 196 --RGYAPER--------------VNSWMTDSADNSFCVGELWKGPSEYPNWDWRNTASWQ 239
Query: 486 YRLEIRPDMSDMTVGTFDAAM 506
++ D + V FD A+
Sbjct: 240 QIIKDWSDRAKCPV--FDFAL 258
Score = 32.4 bits (73), Expect = 1.2
Identities = 8/51 (15%), Positives = 13/51 (25%), Gaps = 4/51 (7%)
Query: 52 FGTPEQLKYLVDECHKAGLLCFMHVV----CAAGDFNNWNREEFAYKKLDF 98
+G+ QL+ AG+ VV N +
Sbjct: 89 YGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQGFWRND 139
Score = 31.2 bits (70), Expect = 2.6
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 3 GIWTGD-RLRQSFGTPEQLKYLVDECHKAGL 32
G + D +G+ QL+ AG+
Sbjct: 77 GYFWHDFNKNGRYGSDAQLRQAASALGGAGV 107
>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA;
1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB:
2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A
Length = 478
Score = 67.4 bits (165), Expect = 1e-11
Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 18/113 (15%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN----VLDGLNEFDGTQACFFH------ 1078
+GT + LK L H+ G+Y+++DVV +H + +D + +FH
Sbjct: 94 YGTADDLKALSSALHERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFSSQDYFHPFCFIQ 153
Query: 1079 ---DGPRGTHPLWDSRL-----FNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 1123
D + + ++ V + + Y DG R D
Sbjct: 154 NYEDQTQVEDCWLGDNTVSLPDLDTTKDVVKNEWYDWVGSLVSNYSIDGLRID 206
Score = 65.8 bits (161), Expect = 5e-11
Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 18/113 (15%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN----VLDGLNEFDGTQACFFH------ 365
+GT + LK L H+ G+Y+++DVV +H + +D + +FH
Sbjct: 94 YGTADDLKALSSALHERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFSSQDYFHPFCFIQ 153
Query: 366 ---DGPRGTHPLWDSRL-----FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 410
D + + ++ V + + Y DG R D
Sbjct: 154 NYEDQTQVEDCWLGDNTVSLPDLDTTKDVVKNEWYDWVGSLVSNYSIDGLRID 206
Score = 33.5 bits (77), Expect = 0.47
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 52 FGTPEQLKYLVDECHKAGLLCFMHVVCAAGDFNNWNREEFAYKKLDFGKWE 102
+GT + LK L H+ G+ + VV N+ + A +D+ ++
Sbjct: 94 YGTADDLKALSSALHERGMYLMVDVV-----ANHMGY-DGAGSSVDYSVFK 138
Score = 31.9 bits (73), Expect = 1.6
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 5 WTGD--RLRQSFGTPEQLKYLVDECHKAGL 32
W D L +++GT + LK L H+ G+
Sbjct: 83 WQQDIYSLNENYGTADDLKALSSALHERGM 112
Score = 31.5 bits (72), Expect = 1.8
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 33 FGTPEQLKYLVDECHKAGL 51
+GT + LK L H+ G+
Sbjct: 94 YGTADDLKALSSALHERGM 112
>2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1
c.1.8.1
Length = 484
Score = 65.9 bits (161), Expect = 5e-11
Identities = 27/115 (23%), Positives = 40/115 (34%), Gaps = 22/115 (19%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN----VLDGLNEFDGTQACFFHDGPRGT 1084
FGT + LK L D H G+Y+++DVV H +D + +FH P
Sbjct: 94 FGTADNLKSLSDALHARGMYLMVDVVPDHMGYAGNGNDVDYSVFDPFDSSSYFH--PYCL 151
Query: 1085 HPLWDSRL----------------FNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 1123
WD+ + +E V + + Y DG R D
Sbjct: 152 ITDWDNLTMVEDCWEGDTIVSLPDLDTTETAVRTIWYDWVADLVSNYSVDGLRID 206
Score = 64.4 bits (157), Expect = 1e-10
Identities = 27/115 (23%), Positives = 40/115 (34%), Gaps = 22/115 (19%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN----VLDGLNEFDGTQACFFHDGPRGT 371
FGT + LK L D H G+Y+++DVV H +D + +FH P
Sbjct: 94 FGTADNLKSLSDALHARGMYLMVDVVPDHMGYAGNGNDVDYSVFDPFDSSSYFH--PYCL 151
Query: 372 HPLWDSRL----------------FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 410
WD+ + +E V + + Y DG R D
Sbjct: 152 ITDWDNLTMVEDCWEGDTIVSLPDLDTTETAVRTIWYDWVADLVSNYSVDGLRID 206
Score = 32.8 bits (75), Expect = 0.78
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 52 FGTPEQLKYLVDECHKAGLLCFMHVVC-AAGDFNNWNREEFAYKK 95
FGT + LK L D H G+ + VV G N N +++
Sbjct: 94 FGTADNLKSLSDALHARGMYLMVDVVPDHMGYAGNGNDVDYSVFD 138
Score = 31.6 bits (72), Expect = 2.1
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 3 GIWTGD--RLRQSFGTPEQLKYLVDECHKAGL 32
G W + +FGT + LK L D H G+
Sbjct: 81 GYWQQKIYDVNSNFGTADNLKSLSDALHARGM 112
Score = 29.7 bits (67), Expect = 8.1
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 33 FGTPEQLKYLVDECHKAGL 51
FGT + LK L D H G+
Sbjct: 94 FGTADNLKSLSDALHARGM 112
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase;
1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB:
1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A
3bsh_A* 1ava_A 1amy_A 1bg9_A*
Length = 405
Score = 65.1 bits (159), Expect = 6e-11
Identities = 24/129 (18%), Positives = 42/129 (32%), Gaps = 25/129 (19%)
Query: 1018 YLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS---KNVLDGLNEFDGTQA 1074
Y +D +G +LK L+ H G+ + D+V +H K+ F+G +
Sbjct: 58 YDIDASK----YGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIYCIFEGGTS 113
Query: 1075 ---------CFFHDGPRGTHPLWDSRLF---------NYSEIEVLRFLLSNLRWYLEEYQ 1116
D + + + ++ V R L L W +
Sbjct: 114 DGRLDWGPHMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLWLKSDLG 173
Query: 1117 FDGFRFDGV 1125
FD +R D
Sbjct: 174 FDAWRLDFA 182
Score = 64.8 bits (158), Expect = 8e-11
Identities = 24/129 (18%), Positives = 42/129 (32%), Gaps = 25/129 (19%)
Query: 305 YLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS---KNVLDGLNEFDGTQA 361
Y +D +G +LK L+ H G+ + D+V +H K+ F+G +
Sbjct: 58 YDIDASK----YGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIYCIFEGGTS 113
Query: 362 ---------CFFHDGPRGTHPLWDSRLF---------NYSEIEVLRFLLSNLRWYLDEYQ 403
D + + + ++ V R L L W +
Sbjct: 114 DGRLDWGPHMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLWLKSDLG 173
Query: 404 FDGFRFDGV 412
FD +R D
Sbjct: 174 FDAWRLDFA 182
Score = 33.6 bits (77), Expect = 0.49
Identities = 9/67 (13%), Positives = 19/67 (28%), Gaps = 14/67 (20%)
Query: 41 YLVDECHKAGLFGTPEQLKYLVDECHKAGLLCFMHVVC------AAGDFNNWNREEFAYK 94
Y +D +G +LK L+ H G + + D+ + ++
Sbjct: 58 YDIDASK----YGNAAELKSLIGALHGKG----VQAIADIVINHRCADYKDSRGIYCIFE 109
Query: 95 KLDFGKW 101
Sbjct: 110 GGTSDGR 116
Score = 32.4 bits (74), Expect = 1.2
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 22 YLVDECHKAGLFGTPEQLKYLVDECHKAGL 51
Y +D +G +LK L+ H G+
Sbjct: 58 YDIDASK----YGNAAELKSLIGALHGKGV 83
Score = 30.9 bits (70), Expect = 3.3
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 14 FGTPEQLKYLVDECHKAGL 32
+G +LK L+ H G+
Sbjct: 65 YGNAAELKSLIGALHGKGV 83
>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A
{Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1
b.71.1.1 c.1.8.1
Length = 680
Score = 65.6 bits (160), Expect = 7e-11
Identities = 25/119 (21%), Positives = 43/119 (36%), Gaps = 25/119 (21%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS------KNVLDGLNEFDG----------T 359
FGT + LVD H G+ V++D +H S + ++ +D
Sbjct: 108 FGTLSDFQRLVDAAHAKGIKVIIDFAPNHTSPASETNPSYMENGRLYDNGTLLGGYTNDA 167
Query: 360 QACFFHDGPRGTHPLWDSRL--------FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 410
F H+G L D N+ + R+L ++ ++ + DG R D
Sbjct: 168 NMYFHHNGGTTFSSLEDGIYRNLFDLADLNHQNPVIDRYLKDAVKMWI-DMGIDGIRMD 225
Score = 65.6 bits (160), Expect = 7e-11
Identities = 25/119 (21%), Positives = 43/119 (36%), Gaps = 25/119 (21%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS------KNVLDGLNEFDG----------T 1072
FGT + LVD H G+ V++D +H S + ++ +D
Sbjct: 108 FGTLSDFQRLVDAAHAKGIKVIIDFAPNHTSPASETNPSYMENGRLYDNGTLLGGYTNDA 167
Query: 1073 QACFFHDGPRGTHPLWDSRL--------FNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 1123
F H+G L D N+ + R+L ++ ++ + DG R D
Sbjct: 168 NMYFHHNGGTTFSSLEDGIYRNLFDLADLNHQNPVIDRYLKDAVKMWI-DMGIDGIRMD 225
Score = 32.9 bits (75), Expect = 0.81
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 4/26 (15%)
Query: 52 FGTPEQLKYLVDECHKAGLLCFMHVV 77
FGT + LVD H G + V+
Sbjct: 108 FGTLSDFQRLVDAAHAKG----IKVI 129
Score = 32.1 bits (73), Expect = 1.6
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 5 WTGD--RLRQSFGTPEQLKYLVDECHKAGL 32
W D + FGT + LVD H G+
Sbjct: 97 WARDFKKPNPFFGTLSDFQRLVDAAHAKGI 126
Score = 31.7 bits (72), Expect = 1.7
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 33 FGTPEQLKYLVDECHKAGL 51
FGT + LVD H G+
Sbjct: 108 FGTLSDFQRLVDAAHAKGI 126
>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable,
family 13 glycosyl hydrolas; 1.60A
{Thermoanaerobacterium thermosulfurigenorganism_taxid}
SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A*
1ciu_A 1a47_A 1pj9_A* 1cgt_A
Length = 683
Score = 64.9 bits (158), Expect = 1e-10
Identities = 19/119 (15%), Positives = 39/119 (32%), Gaps = 25/119 (21%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVL---------------DGLNEFDGTQ 360
FG+ + L++ H + V++D +H S L +
Sbjct: 113 FGSFTDFQNLINTAHAHNIKVIIDFAPNHTSPASETDPTYAENGRLYDNGTLLGGYTNDT 172
Query: 361 ACFFHDGPRGTHPLWDSRLF---------NYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 410
+FH ++ ++ N + +L S ++ +L + DG R D
Sbjct: 173 NGYFHHYGGTDFSSYEDGIYRNLFDLADLNQQNSTIDSYLKSAIKVWL-DMGIDGIRLD 230
Score = 64.9 bits (158), Expect = 1e-10
Identities = 19/119 (15%), Positives = 39/119 (32%), Gaps = 25/119 (21%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVL---------------DGLNEFDGTQ 1073
FG+ + L++ H + V++D +H S L +
Sbjct: 113 FGSFTDFQNLINTAHAHNIKVIIDFAPNHTSPASETDPTYAENGRLYDNGTLLGGYTNDT 172
Query: 1074 ACFFHDGPRGTHPLWDSRLF---------NYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 1123
+FH ++ ++ N + +L S ++ +L + DG R D
Sbjct: 173 NGYFHHYGGTDFSSYEDGIYRNLFDLADLNQQNSTIDSYLKSAIKVWL-DMGIDGIRLD 230
Score = 32.5 bits (74), Expect = 1.1
Identities = 5/26 (19%), Positives = 11/26 (42%), Gaps = 4/26 (15%)
Query: 52 FGTPEQLKYLVDECHKAGLLCFMHVV 77
FG+ + L++ H + V+
Sbjct: 113 FGSFTDFQNLINTAHAHN----IKVI 134
Score = 32.1 bits (73), Expect = 1.5
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 5 WTGD--RLRQSFGTPEQLKYLVDECHKAGL 32
W D R FG+ + L++ H +
Sbjct: 102 WARDFKRTNPYFGSFTDFQNLINTAHAHNI 131
Score = 31.4 bits (71), Expect = 2.3
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 33 FGTPEQLKYLVDECHKAGL 51
FG+ + L++ H +
Sbjct: 113 FGSFTDFQNLINTAHAHNI 131
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus
stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB:
1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Length = 588
Score = 63.9 bits (156), Expect = 2e-10
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 16/119 (13%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLDGLNEFDGTQAC---FFHDGPR 1082
FG E LK L+D CH+ G+ V+LD V +H D + ++ H+ P
Sbjct: 219 FGDKETLKTLIDRCHEKGIRVMLDAVFNHCGYEFAPFQDVWKNGESSKYKDWFHIHEFPL 278
Query: 1083 GTHPLWDSRLF---------NYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHN 1132
T P + F N + EV R+LL +++ E+ DG+R D V + + H
Sbjct: 279 QTEPRPNYDTFAFVPQMPKLNTANPEVKRYLLDVATYWIREFDIDGWRLD-VANEIDHE 336
Score = 62.8 bits (153), Expect = 5e-10
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 16/119 (13%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLDGLNEFDGTQAC---FFHDGPR 369
FG E LK L+D CH+ G+ V+LD V +H D + ++ H+ P
Sbjct: 219 FGDKETLKTLIDRCHEKGIRVMLDAVFNHCGYEFAPFQDVWKNGESSKYKDWFHIHEFPL 278
Query: 370 GTHPLWDSRLF---------NYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHN 419
T P + F N + EV R+LL +++ E+ DG+R D V + + H
Sbjct: 279 QTEPRPNYDTFAFVPQMPKLNTANPEVKRYLLDVATYWIREFDIDGWRLD-VANEIDHE 336
Score = 30.4 bits (69), Expect = 4.7
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 4/26 (15%)
Query: 52 FGTPEQLKYLVDECHKAGLLCFMHVV 77
FG E LK L+D CH+ G + V+
Sbjct: 219 FGDKETLKTLIDRCHEKG----IRVM 240
>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex,
oligosaccharide, family 13 glycosyl hydrolase,
transglycosylation; HET: GLC; 1.78A {Bacillus circulans}
SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A*
1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A*
2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A
1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...
Length = 686
Score = 63.7 bits (155), Expect = 3e-10
Identities = 19/119 (15%), Positives = 39/119 (32%), Gaps = 25/119 (21%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLD---------------GLNEFDGTQ 360
+GT + L+ H + V++D +H S D L +
Sbjct: 112 YGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDT 171
Query: 361 ACFFHDGPRGTHPLWDSRLF---------NYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 410
FH ++ ++ N++ V +L ++ +L + DG R +
Sbjct: 172 QNLFHHNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMWL-DLGIDGIRMN 229
Score = 63.7 bits (155), Expect = 3e-10
Identities = 19/119 (15%), Positives = 39/119 (32%), Gaps = 25/119 (21%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLD---------------GLNEFDGTQ 1073
+GT + L+ H + V++D +H S D L +
Sbjct: 112 YGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDT 171
Query: 1074 ACFFHDGPRGTHPLWDSRLF---------NYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 1123
FH ++ ++ N++ V +L ++ +L + DG R +
Sbjct: 172 QNLFHHNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMWL-DLGIDGIRMN 229
Score = 32.9 bits (75), Expect = 0.78
Identities = 5/26 (19%), Positives = 10/26 (38%), Gaps = 4/26 (15%)
Query: 52 FGTPEQLKYLVDECHKAGLLCFMHVV 77
+GT + L+ H + V+
Sbjct: 112 YGTIADFQNLIAAAHAKN----IKVI 133
Score = 31.7 bits (72), Expect = 1.8
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 14 FGTPEQLKYLVDECHKAGL 32
+GT + L+ H +
Sbjct: 112 YGTIADFQNLIAAAHAKNI 130
Score = 31.7 bits (72), Expect = 1.8
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 33 FGTPEQLKYLVDECHKAGL 51
+GT + L+ H +
Sbjct: 112 YGTIADFQNLIAAAHAKNI 130
>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola
(beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A
{Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A*
1mxd_A* 3qgv_A*
Length = 435
Score = 62.2 bits (151), Expect = 6e-10
Identities = 29/144 (20%), Positives = 47/144 (32%), Gaps = 28/144 (19%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSH---ASKNVLDGLNEFDGTQACFFHDGPRGTH 372
FG+ E+L L+ H G+ V+ DVV +H + ++ T G +
Sbjct: 83 FGSKEELVRLIQTAHAYGIKVIADVVINHRAGGDLEWNPFVGDYTWTDFSKVASGKYTAN 142
Query: 373 PL---------WDSRLF------NYSEIEVLRFLLSNLRW---YLDEYQFDGFRFDGVTS 414
L D F + + +L + YL FDG+RFD V
Sbjct: 143 YLDFHPNELHCCDEGTFGGFPDICHHKEWDQYWLWKSNESYAAYLRSIGFDGWRFDYVKG 202
Query: 415 MLYHNHGCGEGFSGHYDEYFGLNV 438
G + ++G
Sbjct: 203 Y-------GAWVVRDWLNWWGGWA 219
Score = 61.8 bits (150), Expect = 7e-10
Identities = 29/144 (20%), Positives = 47/144 (32%), Gaps = 28/144 (19%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSH---ASKNVLDGLNEFDGTQACFFHDGPRGTH 1085
FG+ E+L L+ H G+ V+ DVV +H + ++ T G +
Sbjct: 83 FGSKEELVRLIQTAHAYGIKVIADVVINHRAGGDLEWNPFVGDYTWTDFSKVASGKYTAN 142
Query: 1086 PL---------WDSRLF------NYSEIEVLRFLLSNLRW---YLEEYQFDGFRFDGVTS 1127
L D F + + +L + YL FDG+RFD V
Sbjct: 143 YLDFHPNELHCCDEGTFGGFPDICHHKEWDQYWLWKSNESYAAYLRSIGFDGWRFDYVKG 202
Query: 1128 MLYHNHGCGEGFSGHYDEYFGLNV 1151
G + ++G
Sbjct: 203 Y-------GAWVVRDWLNWWGGWA 219
Score = 32.9 bits (75), Expect = 0.69
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 52 FGTPEQLKYLVDECHKAGLLCFMHVVC--AAGDFNNWNREEFAYKKLDFGKW 101
FG+ E+L L+ H G+ VV AG WN Y DF K
Sbjct: 83 FGSKEELVRLIQTAHAYGIKVIADVVINHRAGGDLEWNPFVGDYTWTDFSKV 134
Score = 29.8 bits (67), Expect = 6.1
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 14 FGTPEQLKYLVDECHKAGL 32
FG+ E+L L+ H G+
Sbjct: 83 FGSKEELVRLIQTAHAYGI 101
Score = 29.8 bits (67), Expect = 6.1
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 33 FGTPEQLKYLVDECHKAGL 51
FG+ E+L L+ H G+
Sbjct: 83 FGSKEELVRLIQTAHAYGI 101
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP}
SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Length = 583
Score = 61.2 bits (149), Expect = 1e-09
Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 17/120 (14%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLDGL-NEFDGTQACFFHDGPRGT 1084
FG + LK LVD CH+ G+ VLLD V +H+ + +D L N +FH
Sbjct: 215 FGDKDTLKKLVDLCHERGIRVLLDAVFNHSGRTFPPFVDVLKNGEKSKYKDWFHIRSLPL 274
Query: 1085 HPLWDSRL------------FNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHN 1132
+ N +V +LL +++ E DG+R D V + + H
Sbjct: 275 EVVDGIPTYDTFAFEPLMPKLNTEHPDVKEYLLKAAEYWIRETGIDGWRLD-VANEVSHQ 333
Score = 60.1 bits (146), Expect = 3e-09
Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 17/120 (14%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLDGL-NEFDGTQACFFHDGPRGT 371
FG + LK LVD CH+ G+ VLLD V +H+ + +D L N +FH
Sbjct: 215 FGDKDTLKKLVDLCHERGIRVLLDAVFNHSGRTFPPFVDVLKNGEKSKYKDWFHIRSLPL 274
Query: 372 HPLWDSRL------------FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHN 419
+ N +V +LL +++ E DG+R D V + + H
Sbjct: 275 EVVDGIPTYDTFAFEPLMPKLNTEHPDVKEYLLKAAEYWIRETGIDGWRLD-VANEVSHQ 333
Score = 30.4 bits (69), Expect = 4.3
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 4/26 (15%)
Query: 52 FGTPEQLKYLVDECHKAGLLCFMHVV 77
FG + LK LVD CH+ G + V+
Sbjct: 215 FGDKDTLKKLVDLCHERG----IRVL 236
>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL
ABD; 1.70A {Geobacillus stearothermophilus} SCOP:
b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*
Length = 686
Score = 60.6 bits (147), Expect = 3e-09
Identities = 21/126 (16%), Positives = 38/126 (30%), Gaps = 32/126 (25%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVL--------DGLNEFDGTQACFFHDG 367
FG LV++ H+ G+ V++D V +H++ L +F D
Sbjct: 104 FGNWTTFDTLVNDAHQNGIKVIVDFVPNHSTPFKANDSTFAEGGALYNNGTYMGNYFDDA 163
Query: 368 PRGT-HPLWDSRL----------------------FNYSEIEVLRFLLSNLRWYLDEYQF 404
+G H D + + ++L + +
Sbjct: 164 TKGYFHHNGDISNWDDRYEAQWKNFTDPAGFSLADLSQENGTIAQYLTDAAVQLV-AHGA 222
Query: 405 DGFRFD 410
DG R D
Sbjct: 223 DGLRID 228
Score = 60.6 bits (147), Expect = 3e-09
Identities = 21/126 (16%), Positives = 38/126 (30%), Gaps = 32/126 (25%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVL--------DGLNEFDGTQACFFHDG 1080
FG LV++ H+ G+ V++D V +H++ L +F D
Sbjct: 104 FGNWTTFDTLVNDAHQNGIKVIVDFVPNHSTPFKANDSTFAEGGALYNNGTYMGNYFDDA 163
Query: 1081 PRGT-HPLWDSRL----------------------FNYSEIEVLRFLLSNLRWYLEEYQF 1117
+G H D + + ++L + +
Sbjct: 164 TKGYFHHNGDISNWDDRYEAQWKNFTDPAGFSLADLSQENGTIAQYLTDAAVQLV-AHGA 222
Query: 1118 DGFRFD 1123
DG R D
Sbjct: 223 DGLRID 228
Score = 32.5 bits (74), Expect = 1.2
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 4/26 (15%)
Query: 52 FGTPEQLKYLVDECHKAGLLCFMHVV 77
FG LV++ H+ G + V+
Sbjct: 104 FGNWTTFDTLVNDAHQNG----IKVI 125
Score = 31.7 bits (72), Expect = 2.2
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 5 WTGD--RLRQSFGTPEQLKYLVDECHKAGL 32
WT D ++ + FG LV++ H+ G+
Sbjct: 93 WTRDFKQIEEHFGNWTTFDTLVNDAHQNGI 122
Score = 31.3 bits (71), Expect = 2.8
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 33 FGTPEQLKYLVDECHKAGL 51
FG LV++ H+ G+
Sbjct: 104 FGNWTTFDTLVNDAHQNGI 122
>1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif,
hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus
subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A
Length = 422
Score = 59.8 bits (145), Expect = 3e-09
Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 16/112 (14%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGP------- 368
GT ++ K + + G+ V++D V +H + + NE +
Sbjct: 71 LGTEQEFKEMCAAAEEYGIKVIVDAVINHTTFDYAAISNEVKSIPNWTHGNTQIKNWSDR 130
Query: 369 -----RGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM 415
L+D +N +V +L L L++ DGFRFD +
Sbjct: 131 WDVTQNSLLGLYD---WNTQNTQVQSYLKRFLERALNDG-ADGFRFDAAKHI 178
Score = 59.4 bits (144), Expect = 4e-09
Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 16/112 (14%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGP------- 1081
GT ++ K + + G+ V++D V +H + + NE +
Sbjct: 71 LGTEQEFKEMCAAAEEYGIKVIVDAVINHTTFDYAAISNEVKSIPNWTHGNTQIKNWSDR 130
Query: 1082 -----RGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSM 1128
L+D +N +V +L L L + DGFRFD +
Sbjct: 131 WDVTQNSLLGLYD---WNTQNTQVQSYLKRFLERALNDG-ADGFRFDAAKHI 178
Score = 32.1 bits (73), Expect = 1.4
Identities = 7/45 (15%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 52 FGTPEQLKYLVDECHKAGLLCFMHVVC--AAGDFNNWNREEFAYK 94
GT ++ K + + G+ + V D+ + E +
Sbjct: 71 LGTEQEFKEMCAAAEEYGIKVIVDAVINHTTFDYAAISNEVKSIP 115
Score = 30.9 bits (70), Expect = 2.8
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 13 SFGTPEQLKYLVDECHKAGL 32
GT ++ K + + G+
Sbjct: 70 YLGTEQEFKEMCAAAEEYGI 89
Score = 30.2 bits (68), Expect = 4.8
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 33 FGTPEQLKYLVDECHKAGL 51
GT ++ K + + G+
Sbjct: 71 LGTEQEFKEMCAAAEEYGI 89
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase;
2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2
b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A*
1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A*
1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Length = 585
Score = 59.3 bits (144), Expect = 6e-09
Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 18/120 (15%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLDGLNEFDGTQAC---FFHDGPR 369
FG + LVDE H+ G+ ++LD V +HA D L + + ++ F D P
Sbjct: 216 FGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRDVLQKGEQSRYKDWFFIEDFPV 275
Query: 370 GTHPLWDSRLF----------NYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHN 419
+ F EV +L R+++ E DG+R D V + + H
Sbjct: 276 SKTSRTNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWM-EQGIDGWRLD-VANEVDHA 333
Score = 59.3 bits (144), Expect = 6e-09
Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 18/120 (15%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLDGLNEFDGTQAC---FFHDGPR 1082
FG + LVDE H+ G+ ++LD V +HA D L + + ++ F D P
Sbjct: 216 FGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRDVLQKGEQSRYKDWFFIEDFPV 275
Query: 1083 GTHPLWDSRLF----------NYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHN 1132
+ F EV +L R+++ E DG+R D V + + H
Sbjct: 276 SKTSRTNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWM-EQGIDGWRLD-VANEVDHA 333
Score = 31.6 bits (72), Expect = 2.2
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 9/53 (16%)
Query: 52 FGTPEQLKYLVDECHKAGLLCFMHVVCAAGD--FNNWNREEFAYKKLDFGKWE 102
FG + LVDE H+ G + ++ D FN+ + FA++ + +
Sbjct: 216 FGDLPTFRRLVDEAHRRG----IKII---LDAVFNHAGDQFFAFRDVLQKGEQ 261
>3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex,
glycosidase, hydrolase; HET: CE6 ACX; 1.65A
{Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A*
1h3g_A
Length = 601
Score = 59.5 bits (144), Expect = 6e-09
Identities = 24/117 (20%), Positives = 39/117 (33%), Gaps = 22/117 (18%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS------KNVL--DGLNEFDGTQACFFHDG 1080
+G+ E L E K G+ ++ DVV SH K++ D +N H
Sbjct: 195 YGSNEDFVRLSTEARKRGMGLIQDVVLSHIGKHHWWMKDLPTPDWINYGGKFVPTQHHRV 254
Query: 1081 PRGTHPLWDSRLFNY--------------SEIEVLRFLLSNLRWYLEEYQFDGFRFD 1123
+ N+ + V +L+ N W++E G R D
Sbjct: 255 AVQDPYAAQADSENFTKGWFVEGMPDLNQTNPLVANYLIQNNIWWIEYAGLSGLRID 311
Score = 58.7 bits (142), Expect = 1e-08
Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 22/117 (18%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS------KNVL--DGLNEFDGTQACFFHDG 367
+G+ E L E K G+ ++ DVV SH K++ D +N H
Sbjct: 195 YGSNEDFVRLSTEARKRGMGLIQDVVLSHIGKHHWWMKDLPTPDWINYGGKFVPTQHHRV 254
Query: 368 PRGTHPLWDSRLFNY--------------SEIEVLRFLLSNLRWYLDEYQFDGFRFD 410
+ N+ + V +L+ N W+++ G R D
Sbjct: 255 AVQDPYAAQADSENFTKGWFVEGMPDLNQTNPLVANYLIQNNIWWIEYAGLSGLRID 311
Score = 34.0 bits (78), Expect = 0.42
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 5/50 (10%)
Query: 52 FGTPEQLKYLVDECHKAGLLCFMHVVCAAGDFNNWNREEFAYKKLDFGKW 101
+G+ E L E K G+ VV ++ + + K L W
Sbjct: 195 YGSNEDFVRLSTEARKRGMGLIQDVV-----LSHIGKHHWWMKDLPTPDW 239
>1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A
{Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1
c.1.8.1
Length = 750
Score = 58.5 bits (142), Expect = 1e-08
Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 22/106 (20%)
Query: 1035 LKYLVDECHKAGLYVLLDVVHSH-ASKNVLDGLNEFDGTQACFFHDGPRG-------THP 1086
+ +V H AG+ V +DVV++H A + T + RG
Sbjct: 275 FQAMVQAFHNAGIKVYMDVVYNHTAEGGTWTSSDPTTATIYSW-----RGLDNATYYELT 329
Query: 1087 LWDSRLFNYS---------EIEVLRFLLSNLRWYLEEYQFDGFRFD 1123
+ ++ + ++ +L ++ DGFRFD
Sbjct: 330 SGNQYFYDNTGIGANFNTYNTVAQNLIVDSLAYWANTMGVDGFRFD 375
Score = 57.4 bits (139), Expect = 2e-08
Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 22/106 (20%)
Query: 322 LKYLVDECHKAGLYVLLDVVHSH-ASKNVLDGLNEFDGTQACFFHDGPRG-------THP 373
+ +V H AG+ V +DVV++H A + T + RG
Sbjct: 275 FQAMVQAFHNAGIKVYMDVVYNHTAEGGTWTSSDPTTATIYSW-----RGLDNATYYELT 329
Query: 374 LWDSRLFNYS---------EIEVLRFLLSNLRWYLDEYQFDGFRFD 410
+ ++ + ++ +L ++ + DGFRFD
Sbjct: 330 SGNQYFYDNTGIGANFNTYNTVAQNLIVDSLAYWANTMGVDGFRFD 375
>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2,
protein structure initiative; 2.00A {Lactobacillus
plantarum}
Length = 449
Score = 57.7 bits (140), Expect = 1e-08
Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 38/155 (24%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFH---DGPRGTH 1085
+GT K L D H+ G+ V+LD+V++H S + + +F+ DG
Sbjct: 80 YGTLADFKALTDRAHELGMKVMLDIVYNHTSPD-----SVLATEHPEWFYHDADGQLTNK 134
Query: 1086 PLWDSRL--FNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHY 1143
S + +Y E+ ++ + L ++ + DG+R D
Sbjct: 135 VGDWSDVKDLDYGHHELWQYQIDTLLYWSQF--VDGYRCD------VAPL---------- 176
Query: 1144 DEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAE 1178
V D + + A K ++ KYPE + +AE
Sbjct: 177 -------VPLD---FWLEARKQVNAKYPETLWLAE 201
Score = 57.4 bits (139), Expect = 2e-08
Identities = 40/197 (20%), Positives = 70/197 (35%), Gaps = 48/197 (24%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFH---DGPRGTH 372
+GT K L D H+ G+ V+LD+V++H S + + +F+ DG
Sbjct: 80 YGTLADFKALTDRAHELGMKVMLDIVYNHTSPD-----SVLATEHPEWFYHDADGQLTNK 134
Query: 373 PLWDSRL--FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHY 430
S + +Y E+ ++ + L ++ DG+R D
Sbjct: 135 VGDWSDVKDLDYGHHELWQYQIDTLLYWSQF--VDGYRCD------VAPL---------- 176
Query: 431 DEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLEI 490
V D + + A K ++ KYPE + +AE +G ++G TG
Sbjct: 177 -------VPLD---FWLEARKQVNAKYPETLWLAE-SAGSGFIEELRSQGYTGL------ 219
Query: 491 RPDMSDMTVGTFDAAMN 507
FD +
Sbjct: 220 ---SDSELYQAFDMTYD 233
Score = 30.0 bits (68), Expect = 5.3
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 14 FGTPEQLKYLVDECHKAGL 32
+GT K L D H+ G+
Sbjct: 80 YGTLADFKALTDRAHELGM 98
Score = 30.0 bits (68), Expect = 5.3
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 33 FGTPEQLKYLVDECHKAGL 51
+GT K L D H+ G+
Sbjct: 80 YGTLADFKALTDRAHELGM 98
Score = 30.0 bits (68), Expect = 5.3
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 52 FGTPEQLKYLVDECHKAGL 70
+GT K L D H+ G+
Sbjct: 80 YGTLADFKALTDRAHELGM 98
>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes,
hydrolase, glycosidase, neopullu; 2.37A {Nostoc
punctiforme} PDB: 2wcs_A 2wkg_A
Length = 488
Score = 57.7 bits (140), Expect = 1e-08
Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 24/124 (19%)
Query: 305 YLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLDGL-NEFDGTQ 360
Y VD + G E K L+D H+ + V+LD V +H+S+ D L N
Sbjct: 93 YQVDP-----MLGGNEAFKELLDAAHQRNIKVVLDGVFNHSSRGFFFFHDVLENGPHSPW 147
Query: 361 ACFFHDGPRGTHPLWDSRL--------------FNYSEIEVLRFLLSNLRWYLDEYQFDG 406
+F P FN+ EV +++ ++L ++ DG
Sbjct: 148 VNWFKIEGWPLSPYNGEFPANYVGWAGNRALPEFNHDNPEVREYIMEIAEYWL-KFGIDG 206
Query: 407 FRFD 410
+R D
Sbjct: 207 WRLD 210
Score = 57.7 bits (140), Expect = 1e-08
Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 24/124 (19%)
Query: 1018 YLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLDGL-NEFDGTQ 1073
Y VD + G E K L+D H+ + V+LD V +H+S+ D L N
Sbjct: 93 YQVDP-----MLGGNEAFKELLDAAHQRNIKVVLDGVFNHSSRGFFFFHDVLENGPHSPW 147
Query: 1074 ACFFHDGPRGTHPLWDSRL--------------FNYSEIEVLRFLLSNLRWYLEEYQFDG 1119
+F P FN+ EV +++ ++L ++ DG
Sbjct: 148 VNWFKIEGWPLSPYNGEFPANYVGWAGNRALPEFNHDNPEVREYIMEIAEYWL-KFGIDG 206
Query: 1120 FRFD 1123
+R D
Sbjct: 207 WRLD 210
Score = 31.9 bits (73), Expect = 1.6
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 14/64 (21%)
Query: 41 YLVDECHKAGLFGTPEQLKYLVDECHKAGLLCFMHVVCAAGD--FNNWNREEFAYKKLDF 98
Y VD + G E K L+D H+ + VV D FN+ +R F + +
Sbjct: 93 YQVDP-----MLGGNEAFKELLDAAHQRN----IKVV---LDGVFNHSSRGFFFFHDVLE 140
Query: 99 GKWE 102
Sbjct: 141 NGPH 144
Score = 29.6 bits (67), Expect = 7.1
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 5/30 (16%)
Query: 22 YLVDECHKAGLFGTPEQLKYLVDECHKAGL 51
Y VD + G E K L+D H+ +
Sbjct: 93 YQVDP-----MLGGNEAFKELLDAAHQRNI 117
Score = 29.6 bits (67), Expect = 7.9
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 14 FGTPEQLKYLVDECHKAGL 32
G E K L+D H+ +
Sbjct: 99 LGGNEAFKELLDAAHQRNI 117
>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national
project on structural and functional analyses; HET: GLC;
2.30A {Thermus thermophilus}
Length = 475
Score = 55.4 bits (134), Expect = 8e-08
Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 17/111 (15%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLDGL-NEFDGTQACFFH---DGP 368
G E L++L++ H G+ V+LD V +H + + N ++H
Sbjct: 93 LGGNEALRHLLEVAHAHGVRVILDGVFNHTGRGFFAFQHLMENGEQSPYRDWYHVKGFPL 152
Query: 369 RGTHPLWDSRLF---------NYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 410
+ + + V +LL+ ++ + DG+R D
Sbjct: 153 KAYTAHPNYEAWWGNPELPKLKVETPAVREYLLAVAEHWI-RFGVDGWRLD 202
Score = 55.4 bits (134), Expect = 8e-08
Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 17/111 (15%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLDGL-NEFDGTQACFFH---DGP 1081
G E L++L++ H G+ V+LD V +H + + N ++H
Sbjct: 93 LGGNEALRHLLEVAHAHGVRVILDGVFNHTGRGFFAFQHLMENGEQSPYRDWYHVKGFPL 152
Query: 1082 RGTHPLWDSRLF---------NYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 1123
+ + + V +LL+ ++ + DG+R D
Sbjct: 153 KAYTAHPNYEAWWGNPELPKLKVETPAVREYLLAVAEHWI-RFGVDGWRLD 202
Score = 31.1 bits (71), Expect = 2.9
Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 4/26 (15%)
Query: 52 FGTPEQLKYLVDECHKAGLLCFMHVV 77
G E L++L++ H G + V+
Sbjct: 93 LGGNEALRHLLEVAHAHG----VRVI 114
Score = 29.6 bits (67), Expect = 9.0
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 14 FGTPEQLKYLVDECHKAGL 32
G E L++L++ H G+
Sbjct: 93 LGGNEALRHLLEVAHAHGV 111
Score = 29.6 bits (67), Expect = 9.0
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 33 FGTPEQLKYLVDECHKAGL 51
G E L++L++ H G+
Sbjct: 93 LGGNEALRHLLEVAHAHGV 111
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.2 bits (132), Expect = 1e-07
Identities = 106/722 (14%), Positives = 194/722 (26%), Gaps = 205/722 (28%)
Query: 182 YESHVGICTQEQKCASYEDFVRVVIPRIVK--QGMAIPDKWIELLKKFK-DEDWNMGNIV 238
+ H+ T E + Y+D + V V + D +L K + D + V
Sbjct: 3 HHHHMDFETGEHQ-YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 239 HTLTNRRYMEKTVAYAESHDQALVGD--KTIAFWLMDKEMYTHMSTLSDPSLIIDRACEK 296
R ++ E Q V + + +LM PS++ E+
Sbjct: 62 SGT--LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ----RQPSMMTRMYIEQ 115
Query: 297 ----FGTPEQL-KYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLD----VVH--SHA 345
+ + KY V + L + L L ++ +
Sbjct: 116 RDRLYNDNQVFAKYNVSR---------LQPYLKL-----RQALLELRPAKNVLIDGVLGS 161
Query: 346 SKNVL--DGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQ 403
K + D + Q W + L N + E + +L L YQ
Sbjct: 162 GKTWVALDVCLSYK-VQCKM----DFKIF--WLN-LKNCNSPETVLEMLQKLL-----YQ 208
Query: 404 FDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITI 463
D + ++ L L Y + +
Sbjct: 209 ID--------------PNWTSRSDHSSNIKLRIHSIQAELRRL-----LKSKPYENCLLV 249
Query: 464 AEDVS------GMPASCR--------PVTEGGTGFDYRLEIRPDMSDMTVGTFDAAMNTT 509
+V SC+ VT+ + I D MT+ +
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA-ATTTHISLDHHSMTLTPDE-----V 303
Query: 510 EERF-KWLSADPGYVSTKHEGDKVIIFERAGLLFAFNFNGTQSFTDYRYCSTQSYSTHNT 568
+ K+L P E + + A +S D T
Sbjct: 304 KSLLLKYLDCRPQ--DLPREVLTTNPRRLS--IIA------ESIRDGL----------AT 343
Query: 569 W-TWRGSISKLHRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIK 627
W W+ V + K +++S N L+P + + R S+
Sbjct: 344 WDNWK-------HVNCD---KLTTIIESS------LNVLEPAEYRKMF------DRLSV- 380
Query: 628 LYLPTRTGLILTTSPGTSSDIPSG-----WISRELVTTLPTGMLGDNGILLMMNYSSIN- 681
P S+ IP+ W +++ + ++ + YS +
Sbjct: 381 --FP------------PSAHIPTILLSLIW--FDVIKSDVMVVVNK-----LHKYSLVEK 419
Query: 682 ------SSIGGI--EKFTTSYNKYGIH---VQADNSVRCFE-WAPSAQQL--YLTGYNAV 727
SI I E N+Y +H V N + F+ L Y +
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479
Query: 728 QLMAIMEHAYYASFG--YQVTSFFAASSRTMGNSQSVDPASIHIPELHKLLERDPYLNPY 785
L I F + F R + + SI + L +L PY+
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA-SGSI-LNTLQQLKFYKPYICDN 537
Query: 786 QYEMKRRYGLMVNFLEQFEKHEDPASIHIPELHKLLERDPYLNPYQ----------YEMK 835
+ +R +++FL + E++ L Y + + +E
Sbjct: 538 DPKYERLVNAILDFLPKIEEN--------------LICSKYTDLLRIALMAEDEAIFEEA 583
Query: 836 RR 837
+
Sbjct: 584 HK 585
Score = 49.9 bits (118), Expect = 7e-06
Identities = 105/751 (13%), Positives = 213/751 (28%), Gaps = 252/751 (33%)
Query: 484 FDYRLEIRPDMSDMTVGTFDAAMNTTEERFKWLSADPGYVSTKHEGDKVII----FERAG 539
+ Y+ +I D V FD K + P + +K E D +I+
Sbjct: 16 YQYK-DILSVFEDAFVDNFD---------CKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 540 LLF----AFNFNGTQSFTDYRYCSTQSYSTHNTWTWRGSISKLHRVGVEQAGKYKVVLDS 595
LF + Q F + +Y + S + + +
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVL--RINYK----FLM----SPIKT-------EQR----- 103
Query: 596 DCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLP---TRTGLILTTSPGTSSDIPSGW 652
P + Y E + N +++ +R L P+
Sbjct: 104 -----------QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152
Query: 653 ISRELVTTLPTGMLGDNGILLMMNYSSINSSIGGIEKFTT----SYNKYGIHVQADNSVR 708
+ + G+LG G K T Y + + D +
Sbjct: 153 VLID-------GVLG----------------SG---K-TWVALDVCLSYKVQCKMDFKI- 184
Query: 709 CFEWAPSAQQLYLTGYNAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGNSQSVDPASIH 768
F W + ++ +++ YQ+ + + S N IH
Sbjct: 185 -F-WLNLKNC-----NSPETVLEMLQ-----KLLYQIDPNWTSRSDHSSN----IKLRIH 228
Query: 769 --IPELHKLLERDPYLNPYQYEMKRRYGLMV-------NFLEQFEKHEDPASIHIPELHK 819
EL +LL+ PY N L+V F + + K
Sbjct: 229 SIQAELRRLLKSKPYEN----------CLLVLLNVQNAKAWNAF----NLSC-------K 267
Query: 820 LLERDPYLNPYQYEMKRRYGLMVNFLEQLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHK 879
+L + R+ + +FL A T + D H
Sbjct: 268 IL------------LTTRFKQVTDFLS-----AATTTHISL---------------DHHS 295
Query: 880 WTSSKPKKPENLKIYESHVGICTQ---EQKCASYEDFVRVVIPRIVKQGDFNNWNREEFA 936
T + E + ++ Q + + +I ++ G W+
Sbjct: 296 MTLT---PDEVKSLLLKYLDCRPQDLPREVLTTNP-RRLSIIAESIRDG-LATWDN---- 346
Query: 937 YKKLDFGKWELVLPPNPDGDFNNWNREEF--AYKKLDFGKWELVLPPNPDGSCKLTHLSQ 994
+K ++ K ++ + N E+ + +L V PP+ H+
Sbjct: 347 WKHVNCDKLTTII----ESSLNVLEPAEYRKMFDRL------SVFPPS-------AHIPT 389
Query: 995 VKLVVRNQHGHLLDRFGTPEQLKYLVDECHKAGL-FGTPEQLKYLVDECHKAGLYVLLDV 1053
+ L + + + +V++ HK L P++ + +Y+ L V
Sbjct: 390 ILLSL-------IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI---P--SIYLELKV 437
Query: 1054 -------VHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNY----------- 1095
+H ++++D N F D P D +++
Sbjct: 438 KLENEYALH----RSIVDHYN----IPKTFDSDDL--IPPYLDQYFYSHIGHHLKNIEHP 487
Query: 1096 SEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSML--------YHNHGCGEGFSGHYDEYF 1147
+ + R + + R+ ++ + D ++ S+L Y + C Y+
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN--DPKYERLV 545
Query: 1148 GLNVDTDALIYLM-VANKFLHDKYPEIITIA 1177
L +L + + KY +++ IA
Sbjct: 546 N-----AILDFLPKIEENLICSKYTDLLRIA 571
Score = 47.9 bits (113), Expect = 3e-05
Identities = 49/340 (14%), Positives = 104/340 (30%), Gaps = 91/340 (26%)
Query: 82 DFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKL---THLSQVKLVVRNQHGHLLDR--- 135
D + + + +++D +++ + T LS+ + +V+ +L
Sbjct: 37 DVQDMPKSILSKEEID----HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK 92
Query: 136 --LSPWATYVTEPPVVGHAYEQ---RIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICT 190
+SP T +P ++ Y + R++N Q K+ S+ + L+
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLYN-DNQVFAKYNVSRLQPYLKLRQ-------AL 144
Query: 191 QEQKCASYEDFVRVVIPRIVKQGMAIPDKW---IELLKKFKDEDWNMGNIVHTLTNRRYM 247
E + A ++ G+ K +++ +K + M + ++
Sbjct: 145 LELRPAKN----------VLIDGVLGSGKTWVALDVCLSYKVQC-KMDFKIF------WL 187
Query: 248 EKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLV 307
+ S + L EM + DP+ + +K +
Sbjct: 188 --NLKNCNSPETVL-------------EMLQKLLYQIDPNW-----TSRSDHSSNIKLRI 227
Query: 308 DECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQAC----- 362
E + L + ++ L VLL+V + + F+ + C
Sbjct: 228 HS-------IQAELRRLLKSKPYENCLLVLLNV----QNAKAWNA---FNLS--CKILLT 271
Query: 363 -------FFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNL 395
F TH D + EV LL L
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Score = 37.5 bits (86), Expect = 0.035
Identities = 73/514 (14%), Positives = 133/514 (25%), Gaps = 151/514 (29%)
Query: 894 YESHVGICTQEQKCASYEDFVRVVIPRIVKQGDFN---NWNREEFAYKKLDFGKWELVLP 950
+ H+ T E + Y+D + V V D + + + +++D +++
Sbjct: 3 HHHHMDFETGEHQ-YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEID----HIIMS 57
Query: 951 PNPDGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVV----RNQHGHL 1006
+ + W L+ V+ V R + L
Sbjct: 58 K---------DAVSGTLRLF----WTLLSKQE----------EMVQKFVEEVLRINYKFL 94
Query: 1007 LDRFGT----PEQLKYLVDECHKAGLFGTPEQL-KYLV--DECH---KAGLYVLLD---- 1052
+ T P + + E L+ + KY V + + + L L
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDR-LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 1053 VVH--SHASKNVL--DGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNL 1108
++ + K + D + Q W + L N + E + +L L
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYK-VQCKM----DFKIF--WLN-LKNCNSPETVLEMLQKL 205
Query: 1109 RWYLEEYQFDG---FRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYL------ 1159
YQ D R D +++ H + L+ L
Sbjct: 206 L-----YQIDPNWTSRSDHSSNIKLRIHSIQAELR----RLLKSKPYENCLLVLLNVQNA 256
Query: 1160 MVANKF------LHDKYPEIIT----IAEDVSGMPASCRPVTEGGTGFDYR-----LGQY 1204
N F L + T + + +S + + L +Y
Sbjct: 257 KAWNAFNLSCKIL------LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 1205 LHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNN--RRNSIKL 1262
L PR + S R T W+N N KL
Sbjct: 311 LDCRPQDLPR----EVLTTNPRR---LSIIAESIRDGLAT--------WDNWKHVNCDKL 355
Query: 1263 YLPTRTGIIDE-VNLLNNVREERNNENNMKRYIQTESNMNGFGI---------QTLP--- 1309
T II+ +N+L E R K + + + L
Sbjct: 356 -----TTIIESSLNVLEPA-EYR------KMFDR-------LSVFPPSAHIPTILLSLIW 396
Query: 1310 TQSPLYLVAKIEKPCSTREVV-KAPLPFGVRLHS 1342
V + +V K P + + S
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430
Score = 34.4 bits (78), Expect = 0.30
Identities = 46/342 (13%), Positives = 95/342 (27%), Gaps = 124/342 (36%)
Query: 7 GDRLRQSFGTPEQLKYL-VDECHKA------GLFGTPEQLKYLVDECHKAGLF------- 52
+ +R T + K++ D+ L P + + + D +F
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVL--EPAEYRKMFDRL---SVFPPSAHIP 388
Query: 53 ----------GTPEQLKYLVDECHKAGLLCFMHVVCAAGDFNNWNREEFAYKKLDFGKWE 102
+ +V++ HK L+ +E
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLV-------------EKQPKESTISIPS----- 430
Query: 103 LVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATYVTEPPVVGHAYEQRIWNPKP 162
+ L + KL + + H ++D Y
Sbjct: 431 IYL----ELKVKLENEYAL-------HRSIVDH------Y------------------NI 455
Query: 163 QDKHKWTSSKPKKPDNLKIYESHVG----ICTQEQKCAS----YEDFVRVVIPRIVKQGM 214
P D Y SH+G ++ + DF
Sbjct: 456 PKTFDSDDLIPPYLDQY-FY-SHIGHHLKNIEHPERMTLFRMVFLDF------------- 500
Query: 215 AIPDKWIELLKKFKDED--WNM-GNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWL 271
+++E +K + + WN G+I++TL ++ + + + + LV + F L
Sbjct: 501 ----RFLE--QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA-ILDF-L 552
Query: 272 MDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKA 313
E S +D ++ A + + + +E HK
Sbjct: 553 PKIEENLICSKYTD---LLRIA---LMAED--EAIFEEAHKQ 586
>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase,
glycosidase, ISO-amylase glycosyl hydrolase, glycogen
metabolism; 2.25A {Escherichia coli k-12}
Length = 657
Score = 53.8 bits (130), Expect = 3e-07
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 38/112 (33%)
Query: 1033 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGP----RG----- 1083
++ + + HKAG+ V+LD+V +H++ E D DGP RG
Sbjct: 242 DEFRDAIKALHKAGIEVILDIVLNHSA--------ELD-------LDGPLFSLRGIDNRS 286
Query: 1084 ---THPLWDSRLFNYS---------EIEVLRFLLSNLRWYLEEYQFDGFRFD 1123
D N++ V+ + + LR+++E DGFRFD
Sbjct: 287 YYWIRE--DGDYHNWTGCGNTLNLSHPAVVDYASACLRYWVETCHVDGFRFD 336
Score = 53.0 bits (128), Expect = 5e-07
Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 38/112 (33%)
Query: 320 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGP----RG----- 370
++ + + HKAG+ V+LD+V +H++ E D DGP RG
Sbjct: 242 DEFRDAIKALHKAGIEVILDIVLNHSA--------ELD-------LDGPLFSLRGIDNRS 286
Query: 371 ---THPLWDSRLFNYS---------EIEVLRFLLSNLRWYLDEYQFDGFRFD 410
D N++ V+ + + LR++++ DGFRFD
Sbjct: 287 YYWIRE--DGDYHNWTGCGNTLNLSHPAVVDYASACLRYWVETCHVDGFRFD 336
>3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable,
halophilic, N domain, starch binding, hydrolase; HET:
G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB:
3bcd_A* 3bcf_A
Length = 599
Score = 53.4 bits (128), Expect = 4e-07
Identities = 26/148 (17%), Positives = 44/148 (29%), Gaps = 51/148 (34%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSH-----------ASKNVLDGLNEFDGTQACFF 364
+GT +L+ +D H + V D V +H +N D ++ F
Sbjct: 205 YGTKGELENAIDALHNNDIKVYFDAVLNHRMGADYAETVLLDENSRDKPGQYIKAWTGFN 264
Query: 365 HDGPRGTHP--LWDSRLF--------------------------------------NYSE 384
G G + W+ + F +Y
Sbjct: 265 FPGRNGEYSNFTWNGQCFDGTDWDDYSKESGKYLFDEKSWDWTYNWDEDYLMGADVDYEN 324
Query: 385 IEVLRFLLSNLRWYLDEYQFDGFRFDGV 412
V ++ +W ++ FDGFR D V
Sbjct: 325 EAVQNDVIDWGQWIINNIDFDGFRLDAV 352
Score = 53.4 bits (128), Expect = 4e-07
Identities = 26/148 (17%), Positives = 43/148 (29%), Gaps = 51/148 (34%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSH-----------ASKNVLDGLNEFDGTQACFF 1077
+GT +L+ +D H + V D V +H +N D ++ F
Sbjct: 205 YGTKGELENAIDALHNNDIKVYFDAVLNHRMGADYAETVLLDENSRDKPGQYIKAWTGFN 264
Query: 1078 HDGPRGTHP--LWDSRLF--------------------------------------NYSE 1097
G G + W+ + F +Y
Sbjct: 265 FPGRNGEYSNFTWNGQCFDGTDWDDYSKESGKYLFDEKSWDWTYNWDEDYLMGADVDYEN 324
Query: 1098 IEVLRFLLSNLRWYLEEYQFDGFRFDGV 1125
V ++ +W + FDGFR D V
Sbjct: 325 EAVQNDVIDWGQWIINNIDFDGFRLDAV 352
Score = 38.0 bits (88), Expect = 0.022
Identities = 10/66 (15%), Positives = 20/66 (30%), Gaps = 6/66 (9%)
Query: 52 FGTPEQLKYLVDECHKAGLLCFMHVV---CAAGDFNNWNREEFAYK---KLDFGKWELVL 105
+GT +L+ +D H + + V D+ + + W
Sbjct: 205 YGTKGELENAIDALHNNDIKVYFDAVLNHRMGADYAETVLLDENSRDKPGQYIKAWTGFN 264
Query: 106 PPNPDG 111
P +G
Sbjct: 265 FPGRNG 270
Score = 29.9 bits (67), Expect = 7.8
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 14 FGTPEQLKYLVDECHKAGL 32
+GT +L+ +D H +
Sbjct: 205 YGTKGELENAIDALHNNDI 223
Score = 29.9 bits (67), Expect = 7.8
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 33 FGTPEQLKYLVDECHKAGL 51
+GT +L+ +D H +
Sbjct: 205 YGTKGELENAIDALHNNDI 223
>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel,
alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB:
2e8z_A* 2e9b_A*
Length = 718
Score = 53.1 bits (128), Expect = 5e-07
Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 32/105 (30%)
Query: 1035 LKYLVDECHKAGLYVLLDVVHSH-ASKNVLDGLNEFDGTQACFFHDGPRGTHP-----LW 1088
LK +++ H+ GL V+LDVV +H + + T P
Sbjct: 318 LKQMINTLHQHGLRVILDVVFNHVYKRE----------------NSPFEKTVPGYFFRHD 361
Query: 1089 DSRLF-NYS----EIE-----VLRFLLSNLRWYLEEYQFDGFRFD 1123
+ N + +I +F+ + ++LEEY DGFRFD
Sbjct: 362 ECGKPSNGTGVGNDIASERRMARKFIADCVVYWLEEYNVDGFRFD 406
Score = 52.4 bits (126), Expect = 1e-06
Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 32/105 (30%)
Query: 322 LKYLVDECHKAGLYVLLDVVHSH-ASKNVLDGLNEFDGTQACFFHDGPRGTHP-----LW 375
LK +++ H+ GL V+LDVV +H + + T P
Sbjct: 318 LKQMINTLHQHGLRVILDVVFNHVYKRE----------------NSPFEKTVPGYFFRHD 361
Query: 376 DSRLF-NYS----EIE-----VLRFLLSNLRWYLDEYQFDGFRFD 410
+ N + +I +F+ + ++L+EY DGFRFD
Sbjct: 362 ECGKPSNGTGVGNDIASERRMARKFIADCVVYWLEEYNVDGFRFD 406
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.1 bits (127), Expect = 7e-07
Identities = 55/339 (16%), Positives = 88/339 (25%), Gaps = 115/339 (33%)
Query: 940 LDFGKWELVLP-PNPDGDFNNWNREEFAYKKL--DFGKWELVLPPNPDGSCKLTHLSQVK 996
L G E VL P ++ F +L F K LP +G +
Sbjct: 11 LSHGSLEHVLLVPT-----ASF----FIASQLQEQFNKI---LPEPTEGFAADDEPTTP- 57
Query: 997 LVVRNQHGHLLDRFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHS 1056
L+ +F L Y+ + + + L + E Y+ + +H+
Sbjct: 58 -------AELVGKF-----LGYVSSLVEPSKVGQFDQVLNLCLTEFENC--YLEGNDIHA 103
Query: 1057 HASKNVLDGLNEFDGT----------QACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLS 1106
A+K L N+ A P +S LF +
Sbjct: 104 LAAK--LLQENDTTLVKTKELIKNYITARIMAKRPFDKKS--NSALFRAVGEGNAQL--- 156
Query: 1107 NLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFL 1166
F G G+ D+YF + L + L
Sbjct: 157 ----VA---IFGGQ--------------------GNTDDYF------EEL-------RDL 176
Query: 1167 HDKYP----EIITIA----EDVSGMPASCRPVTEGGTGFDYR--L--------GQYLHQH 1208
+ Y ++I + ++ V G + L YL
Sbjct: 177 YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF--TQGLNILEWLENPSNTPDKDYLLSI 234
Query: 1209 SILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYE 1247
I P +GV Q Y V G PG +
Sbjct: 235 PISCPLIGVIQLAHYVVT----AKLLG----FTPGELRS 265
Score = 47.7 bits (113), Expect = 3e-05
Identities = 83/499 (16%), Positives = 130/499 (26%), Gaps = 171/499 (34%)
Query: 687 IEKFTTSY---NKYGIHVQADNSVRCFEWAPSAQQLYLTGY-NAVQLM----------AI 732
+ +F Y N IH A ++ + + + Y A + A+
Sbjct: 88 LTEFENCYLEGN--DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL 145
Query: 733 MEHA------YYASFGYQVTSFFAASSRTMGNSQSVDPASIHIPELHKLLERDPYLNPYQ 786
A FG Q GN+ + EL RD Y Y
Sbjct: 146 FRAVGEGNAQLVAIFGGQ------------GNTDD------YFEEL-----RDLY-QTYH 181
Query: 787 YEMKRRYGLMVNFLEQFEKHEDPASIHIPE---LHKLLER------DPYLNPYQYEMKRR 837
+ L + + A + + + LE YL
Sbjct: 182 VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP-- 239
Query: 838 YGLMVNFLEQLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESH 897
+ + QL A YV ++G +T P L+ Y
Sbjct: 240 ----LIGVIQL---AHYVVTAKLLG-----------------FT------PGELRSYLKG 269
Query: 898 VGICTQEQKCASYEDFVRVVIPRIVKQGDFNNWNREEF---AYKKLDFGKW--------- 945
+Q +V + + D +W E F K + +
Sbjct: 270 ATGHSQG-----------LVTAVAIAETD--SW--ESFFVSVRKAITVLFFIGVRCYEAY 314
Query: 946 -ELVLPPNPDGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVR--NQ 1002
LPP+ D N E P+P S QV+ V N
Sbjct: 315 PNTSLPPSILEDSLE-NNEG---------------VPSPMLSISNLTQEQVQDYVNKTNS 358
Query: 1003 H----GHL---L----DRF---GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLY 1048
H + L G P+ L L KA +Q + E
Sbjct: 359 HLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSN 418
Query: 1049 VLLDV---VHSH----ASKNVLDGLN----EFDGTQACF--FH--DGPRGTHPLWDSRLF 1093
L V HSH AS + L F+ + DG D R+
Sbjct: 419 RFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS-------DLRVL 471
Query: 1094 NYSEIEVL-RFLLSN-LRW 1110
+ S E + ++ ++W
Sbjct: 472 SGSISERIVDCIIRLPVKW 490
Score = 44.3 bits (104), Expect = 3e-04
Identities = 96/747 (12%), Positives = 183/747 (24%), Gaps = 298/747 (39%)
Query: 270 WLMDKEMYTHMSTLSDP-SLIIDRACEKFGTPEQ-----------LKYLVDECHKAGLFG 317
L+ + S L + + I+ E F ++ L Y+ + +
Sbjct: 20 LLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQ 79
Query: 318 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGT----------QACFFHDG 367
+ L + E Y+ + +H+ A+K L N+ A
Sbjct: 80 FDQVLNLCLTEFENC--YLEGNDIHALAAK--LLQENDTTLVKTKELIKNYITARIMAKR 135
Query: 368 PRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFS 427
P +S LF + F G
Sbjct: 136 PFDKKS--NSALFRAVGEGNAQL-------VA---IFGGQ-------------------- 163
Query: 428 GHYDEYFGLNVDTDALIYLMVANKFLHDKYP----EIITIA----EDVSGMPASCRPVTE 479
G+ D+YF + L + L+ Y ++I + ++ V
Sbjct: 164 GNTDDYF------EEL-------RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF- 209
Query: 480 GGTGFDYRLEIRPDMSDMTVGTFDAAMNTTEERFKWLSADPGYVSTKHEGDKVIIFERAG 539
G + +WL +P S + D +
Sbjct: 210 -TQGLNIL--------------------------EWLE-NP---SNTPDKDYL-----LS 233
Query: 540 LLFAFNFNG-TQSFTDY-RYCSTQSYSTHNTWTW-RGSISKLHRVGVEQAGKYKVVL--- 593
+ + G Q Y ++ ++ +G+ H G+ A V +
Sbjct: 234 IPISCPLIGVIQ-LAHYVVTAKLLGFTPGELRSYLKGATG--HSQGLVTA----VAIAET 286
Query: 594 DSDCSHFGGFNRLDPGTV----------YETYPEPWNNRRNSIKLYLPTRTGLILTTSPG 643
DS S F + YE YP + P
Sbjct: 287 DSWES----FFVSVRKAITVLFFIGVRCYEAYPN--------------------TSLPPS 322
Query: 644 TSSDIPSGWISRELVTTLPTGMLGDNGILLMMNYSSINSSIGGIEKFTTSYNKYG----- 698
D S E +P+ ML + + + ++ + N +
Sbjct: 323 ILED------SLENNEGVPSPMLSISNL-----------TQEQVQDYVNKTNSHLPAGKQ 365
Query: 699 IHVQADNSVRCFEWAPSAQQLYLTGYNAVQLMAIMEHAYYASFGYQVTSFFAASSRTMGN 758
+ + N + ++G L Y + + G
Sbjct: 366 VEISLVNGAKNL---------VVSGP-PQSL-------------YGLNLTLRKAKAPSGL 402
Query: 759 SQSVDPAS------------IHIPELHKLLERDPYLNPYQYEMKRRYGLMVNFLEQFEKH 806
QS P S + P H L P ++ + K+
Sbjct: 403 DQSRIPFSERKLKFSNRFLPVASP-FH-----SHLLVPAS-DL---------INKDLVKN 446
Query: 807 E---DPASIHIPELHKLLERDPYLNPYQYEMKRRYGLMVNFLEQLSPWATYVTEPPVVGH 863
+ I IP D R + E++ + PV
Sbjct: 447 NVSFNAKDIQIPVYDTFDGSDL----------RVLSGSI--SERIVDC---IIRLPV--- 488
Query: 864 AYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHV-----------GICTQEQKCASYED 912
KW ++ K +H+ G+ T K +
Sbjct: 489 ---------------KWETTTQFKA-------THILDFGPGGASGLGVLTHRNKDGTG-- 524
Query: 913 FVRVVIPRIVKQGDFNNWNREEFAYKK 939
VRV++ G + +++ +K+
Sbjct: 525 -VRVIVA-----GTLDINPDDDYGFKQ 545
Score = 38.9 bits (90), Expect = 0.013
Identities = 33/163 (20%), Positives = 46/163 (28%), Gaps = 50/163 (30%)
Query: 449 ANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLEIRPDMSDMTVGTFDAAMNT 508
A+ D Y +I + V P + + GG IR + S M T
Sbjct: 1649 ADNHFKDTYG--FSILDIVINNPVN-LTIHFGGEK---GKRIRENYSAMIFETIVDGKLK 1702
Query: 509 TEERFKWLSADPGYVSTKHEGDKVIIFER-AGLLFAFNFNGTQSFTDYRYCSTQ------ 561
TE+ FK ++ E F GLL A TQ TQ
Sbjct: 1703 TEKIFKEIN----------EHSTSYTFRSEKGLLSA-----TQ--------FTQPALTLM 1739
Query: 562 SYSTHNTWTWRGSISKL-----HRVG-----VEQAGKYKVVLD 594
+ +G I H +G A V+
Sbjct: 1740 EKAAFEDLKSKGLIPADATFAGHSLGEYAALASLAD----VMS 1778
Score = 38.1 bits (88), Expect = 0.023
Identities = 80/471 (16%), Positives = 132/471 (28%), Gaps = 148/471 (31%)
Query: 29 KAGLF------GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLLCFMHVVCAAGD 82
A L G + Y +E L+ T LV + L+ F +
Sbjct: 153 NAQLVAIFGGQGNTD--DYF-EELRD--LYQTY---HVLVGD-----LIKFSAETLSELI 199
Query: 83 FNNWNREEFAYKKLDFGKWELVLP-PNPDG--------SCKLTHLSQVK--LVVRNQHG- 130
+ E+ + L+ +W L P PD SC L + Q+ +V G
Sbjct: 200 RTTLDAEKVFTQGLNILEW-LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGF 258
Query: 131 ---HLLDRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVG 187
L L AT ++ V A + W S + + +G
Sbjct: 259 TPGELRSYLK-GATGHSQGLVTAVAIAE---------TDSWESFFVSVRKAITVL-FFIG 307
Query: 188 ICTQEQKCASYEDFVRVVI-PRIVK------QGMAIPDKWIELLKKFKDEDWNMGNIVHT 240
+ E + + P I++ +G+ P M +I +
Sbjct: 308 VRCYEA-------YPNTSLPPSILEDSLENNEGVPSP----------------MLSISNL 344
Query: 241 LTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKF--- 297
+ ++ V SH L K + SL+ +
Sbjct: 345 --TQEQVQDYVNKTNSH---LPAGKQVEI-----------------SLVNGA--KNLVVS 380
Query: 298 GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDV---VHSH----ASKNVL 350
G P+ L L KA +Q + E L V HSH AS +
Sbjct: 381 GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLIN 440
Query: 351 DGLN----EFDGTQACF--FH--DGPRGTHPLWDSRLFNYSEIEVL-RFLLSN-LRW--- 397
L F+ + DG D R+ + S E + ++ ++W
Sbjct: 441 KDLVKNNVSFNAKDIQIPVYDTFDGS-------DLRVLSGSISERIVDCIIRLPVKWETT 493
Query: 398 -------YLDEYQFDGFRFDGVTSMLYHN-HGCGEGF-------SGHYDEY 433
LD F G+ + + N G G D+Y
Sbjct: 494 TQFKATHILD---FGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDY 541
Score = 37.3 bits (86), Expect = 0.038
Identities = 43/261 (16%), Positives = 74/261 (28%), Gaps = 105/261 (40%)
Query: 5 WTGDRLRQSFG----TPEQLKYLVDECHKA--------GLFGTPEQLKYLVDECHK---- 48
+ G R +++ P L+ ++ L T EQ++ V++ +
Sbjct: 305 FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNL--TQEQVQDYVNKTNSHLPA 362
Query: 49 -----AGLF---------GTPEQLKYLVDECHKAGLLCFMHVVCAAGDFNNWNREEFAYK 94
L G P+ L L K A + +R F+ +
Sbjct: 363 GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK---------AKAPSGLDQ-SRIPFSER 412
Query: 95 KLDFGKWELVLP---PNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATYVTEPPVVGH 151
KL F LP P H HLL +
Sbjct: 413 KLKFSN--RFLPVASP--------------------FHSHLLVP--------ASDLINKD 442
Query: 152 AYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYEDFVRV----VIP 207
+ + + + + P +Y++ G D +RV +
Sbjct: 443 LVKNNV---------SFNAKDIQIP----VYDTFDG-----------SD-LRVLSGSISE 477
Query: 208 RIVKQGMAIPDKWIELLKKFK 228
RIV + +P KW E +FK
Sbjct: 478 RIVDCIIRLPVKW-ETTTQFK 497
Score = 36.2 bits (83), Expect = 0.099
Identities = 70/475 (14%), Positives = 127/475 (26%), Gaps = 153/475 (32%)
Query: 128 QHGHLLDRLSPWATYVTEPPVVGHAYEQRIWN------PKPQDKHKWTSSKPKKPDNLKI 181
HG L +V P ++ P+P + +P P L
Sbjct: 12 SHGSL--------EHVLLVPTASFFIASQLQEQFNKILPEPTEGF-AADDEPTTPAELVG 62
Query: 182 -YESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHT 240
+ +V + K ++ + + L +F + + GN +H
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLC------------------LTEF-ENCYLEGNDIHA 103
Query: 241 LTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDP------SLIIDRAC 294
L + +D LV K + K T P S +
Sbjct: 104 L--------AAKLLQENDTTLVKTKELI-----KNYITARIMAKRPFDKKSNSALFRAVG 150
Query: 295 EKFGTPEQLKYLVDECHKAGLF------GTPEQLKYLVDECHKAGLY-----VLLDVVHS 343
E A L G + Y +E LY ++ D++
Sbjct: 151 EG---------------NAQLVAIFGGQGNTD--DYF-EELRD--LYQTYHVLVGDLIKF 190
Query: 344 HASKNVLDGLNEFDGTQACFFHDGPRGTHPL-W--------DSRLFNYSEIEV-LRFLLS 393
A L L F +G + L W D I L ++
Sbjct: 191 SA--ETLSELIRTTLDAEKVF---TQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ 245
Query: 394 NLRWYLDEYQFDGF-------RFDGVTSMLYHNHGCGEGF--------SGHYDEYFGLNV 438
L Y+ + GF G T G +G + ++ +F
Sbjct: 246 -LAHYVVTAKLLGFTPGELRSYLKGAT-------GHSQGLVTAVAIAETDSWESFF--VS 295
Query: 439 DTDALIYLMVANKFL-----HDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLEIRPD 493
A+ L F ++ YP ++ + EG L I +
Sbjct: 296 VRKAITVL-----FFIGVRCYEAYPN-TSLPPSIL---EDSLENNEGVPS--PMLSIS-N 343
Query: 494 MSDMTVGTFDAAMNTTEERFKWLSADPGYVSTKHEGDKVIIFERAGL---LFAFN 545
++ V + N+ K + +S + +++ +G L+ N
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQV-----EISLVNGAKNLVV---SGPPQSLYGLN 390
Score = 35.4 bits (81), Expect = 0.17
Identities = 40/215 (18%), Positives = 60/215 (27%), Gaps = 79/215 (36%)
Query: 1055 HSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW-DSRLFNYSEIE-VLRFLLSNLRWYL 1112
AS L Q F P T D + E V +FL
Sbjct: 27 FFIAS--QL---------QEQFNKILPEPTEGFAADDEP--TTPAELVGKFL-------- 65
Query: 1113 EEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYL------MVANKFL 1166
G+ V+S++ G +D+ L + YL +A K L
Sbjct: 66 ------GY----VSSLV------EPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLL 109
Query: 1167 HDKYPEIITIAEDV----SGMPASCRPVTEGGTGFDYRLGQYLHQHSILFPRVGVEQAGK 1222
+ ++ E + + + RP + S LF VG A
Sbjct: 110 QENDTTLVKTKELIKNYITARIMAKRPFDKKSN-------------SALFRAVGEGNAQL 156
Query: 1223 YKVVLDSDCSHFGG-------FNRLDPGTVYETYP 1250
+ FGG F L +Y+TY
Sbjct: 157 VAI--------FGGQGNTDDYFEELR--DLYQTYH 181
Score = 33.1 bits (75), Expect = 0.82
Identities = 28/166 (16%), Positives = 43/166 (25%), Gaps = 63/166 (37%)
Query: 11 RQSF---GTPEQLKYLVDECHKAGLFGTPEQLK------------------------YLV 43
++ G P+ L L KA +Q + LV
Sbjct: 374 AKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLV 433
Query: 44 D-------ECHKAGLFGTPEQLKYLV-------DECHKAGLLCFMHVVCAAGDFNNWNRE 89
+ K + + ++ V D +G + V C W
Sbjct: 434 PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKW--- 490
Query: 90 EFAYKK-----LDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHG 130
E + LDFG P G+ L L RN+ G
Sbjct: 491 ETTTQFKATHILDFG---------PGGASGLG-----VLTHRNKDG 522
>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase,
cell WALL, peptidoglycan-anchor, secreted; 2.10A
{Streptococcus agalactiae COH1} PDB: 3fax_A*
Length = 877
Score = 52.9 bits (127), Expect = 7e-07
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 31/103 (30%)
Query: 1035 LKYLVDECHKAGLYVLLDVVHSH-ASKNVLDG--------LNEFDGTQACFFHDGPRG-- 1083
LK L+ + HK G+ V+LDVV++H A + + +NE DG+ + G
Sbjct: 372 LKQLIHDIHKRGMGVILDVVYNHTAKTYLFEDIEPNYYHFMNE-DGS----PRESFGGGR 426
Query: 1084 ---THPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 1123
TH + R L+ ++++ E++ DGFRFD
Sbjct: 427 LGTTHAM------------SRRVLVDSIKYLTSEFKVDGFRFD 457
Score = 51.8 bits (124), Expect = 1e-06
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 31/103 (30%)
Query: 322 LKYLVDECHKAGLYVLLDVVHSH-ASKNVLDG--------LNEFDGTQACFFHDGPRG-- 370
LK L+ + HK G+ V+LDVV++H A + + +NE DG+ + G
Sbjct: 372 LKQLIHDIHKRGMGVILDVVYNHTAKTYLFEDIEPNYYHFMNE-DGS----PRESFGGGR 426
Query: 371 ---THPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 410
TH + R L+ ++++ E++ DGFRFD
Sbjct: 427 LGTTHAM------------SRRVLVDSIKYLTSEFKVDGFRFD 457
>2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl
hydrolase, glycogen debraching; HET: GLC A16; 2.8A
{Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A
Length = 718
Score = 52.3 bits (126), Expect = 9e-07
Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 36/112 (32%)
Query: 1033 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGP----RG----- 1083
K +V+E H AG+ V++DVV++H + E + H GP RG
Sbjct: 267 LSFKKMVNELHNAGIEVIIDVVYNHTA--------EGN-------HLGPTLSFRGIDNTA 311
Query: 1084 ---THPLWDSRLFNYS---------EIEVLRFLLSNLRWYLEEYQFDGFRFD 1123
P +++ V++ +L +LR+++ E DGFRFD
Sbjct: 312 YYMLQPDNKRYYLDFTGTGNTLNLSHPRVIQMVLDSLRYWVTEMHVDGFRFD 363
Score = 51.5 bits (124), Expect = 2e-06
Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 36/112 (32%)
Query: 320 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGP----RG----- 370
K +V+E H AG+ V++DVV++H + E + H GP RG
Sbjct: 267 LSFKKMVNELHNAGIEVIIDVVYNHTA--------EGN-------HLGPTLSFRGIDNTA 311
Query: 371 ---THPLWDSRLFNYS---------EIEVLRFLLSNLRWYLDEYQFDGFRFD 410
P +++ V++ +L +LR+++ E DGFRFD
Sbjct: 312 YYMLQPDNKRYYLDFTGTGNTLNLSHPRVIQMVLDSLRYWVTEMHVDGFRFD 363
>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase;
1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*
Length = 714
Score = 52.0 bits (125), Expect = 1e-06
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 35/105 (33%)
Query: 1035 LKYLVDECHKAGLYVLLDVVHSH-ASKNVLDG--------LNEFDGTQACFFHDGPRGT- 1084
K L++E HK G+ +LDVV++H A ++ + ++ DGT
Sbjct: 257 FKNLINEIHKRGMGAILDVVYNHTAKVDLFEDLEPNYYHFMDA-DGT----PRTS--FGG 309
Query: 1085 ------HPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 1123
H + R L+ ++++ ++ Y+ DGFRFD
Sbjct: 310 GRLGTTHHM------------TKRLLIDSIKYLVDTYKVDGFRFD 342
Score = 50.8 bits (122), Expect = 2e-06
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 35/105 (33%)
Query: 322 LKYLVDECHKAGLYVLLDVVHSH-ASKNVLDG--------LNEFDGTQACFFHDGPRGT- 371
K L++E HK G+ +LDVV++H A ++ + ++ DGT
Sbjct: 257 FKNLINEIHKRGMGAILDVVYNHTAKVDLFEDLEPNYYHFMDA-DGT----PRTS--FGG 309
Query: 372 ------HPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 410
H + R L+ ++++ +D Y+ DGFRFD
Sbjct: 310 GRLGTTHHM------------TKRLLIDSIKYLVDTYKVDGFRFD 342
>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase;
HET: BGC GLC; 2.25A {Streptococcus pneumoniae}
Length = 1014
Score = 52.2 bits (125), Expect = 1e-06
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 31/103 (30%)
Query: 1035 LKYLVDECHKAGLYVLLDVVHSH-ASKNVLDG--------LNEFDGTQACFFHDGPRG-- 1083
K L++E HK G+ +LDVV++H A ++ + ++ DGT G
Sbjct: 564 FKNLINEIHKRGMGAILDVVYNHTAKVDLFEDLEPNYYHFMDA-DGT----PRTSFGGGR 618
Query: 1084 ---THPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 1123
TH + R L+ ++++ ++ Y+ DGFRFD
Sbjct: 619 LGTTHHM------------TKRLLIDSIKYLVDTYKVDGFRFD 649
Score = 51.4 bits (123), Expect = 2e-06
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 31/103 (30%)
Query: 322 LKYLVDECHKAGLYVLLDVVHSH-ASKNVLDG--------LNEFDGTQACFFHDGPRG-- 370
K L++E HK G+ +LDVV++H A ++ + ++ DGT G
Sbjct: 564 FKNLINEIHKRGMGAILDVVYNHTAKVDLFEDLEPNYYHFMDA-DGT----PRTSFGGGR 618
Query: 371 ---THPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 410
TH + R L+ ++++ +D Y+ DGFRFD
Sbjct: 619 LGTTHHM------------TKRLLIDSIKYLVDTYKVDGFRFD 649
>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase,
starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}
Length = 921
Score = 52.1 bits (125), Expect = 1e-06
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 22/100 (22%)
Query: 1035 LKYLVDECHKAGLYVLLDVVHSH-ASKNVLDGLNEFDGTQ-ACFFHDGPRGTHPLWDSRL 1092
LK L+ H+ + V +DVV++H V D FD ++ G
Sbjct: 534 LKQLIQSLHQQRIGVNMDVVYNHTFDVMVSD----FDKIVPQYYYRTDSNGN-------Y 582
Query: 1093 FNYS----EIE-----VLRFLLSNLRWYLEEYQFDGFRFD 1123
N S E +F+L ++ +++ EY DGFRFD
Sbjct: 583 TNGSGCGNEFATEHPMAQKFVLDSVNYWVNEYHVDGFRFD 622
Score = 51.0 bits (122), Expect = 2e-06
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 22/100 (22%)
Query: 322 LKYLVDECHKAGLYVLLDVVHSH-ASKNVLDGLNEFDGTQ-ACFFHDGPRGTHPLWDSRL 379
LK L+ H+ + V +DVV++H V D FD ++ G
Sbjct: 534 LKQLIQSLHQQRIGVNMDVVYNHTFDVMVSD----FDKIVPQYYYRTDSNGN-------Y 582
Query: 380 FNYS----EIE-----VLRFLLSNLRWYLDEYQFDGFRFD 410
N S E +F+L ++ ++++EY DGFRFD
Sbjct: 583 TNGSGCGNEFATEHPMAQKFVLDSVNYWVNEYHVDGFRFD 622
>3zss_A Putative glucanohydrolase PEP1A; alpha-glucan biosynthesis, glycoside
hydrolase FA; 1.80A {Streptomyces coelicolor} PDB:
3zst_A* 3zt5_A* 3zt6_A* 3zt7_A*
Length = 695
Score = 51.1 bits (122), Expect = 3e-06
Identities = 27/165 (16%), Positives = 49/165 (29%), Gaps = 53/165 (32%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVL-----DGLNEFDGTQACFFHDGPRG 1083
GT + + V E K GL + LD + + + +FH P G
Sbjct: 317 LGTLDDFDHFVTEAGKLGLEIALDFALQCSPDHPWVHKHPE-----------WFHHRPDG 365
Query: 1084 THPLWDSRLFNYSEI----------EVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNH 1133
T ++ Y +I + + LR +++ FR D
Sbjct: 366 TIAHAENPPKKYQDIYPIAFDADPDGLATETVRILRHWMDH-GVRIFRVD---------- 414
Query: 1134 GCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAE 1178
N T + + ++ P++I +AE
Sbjct: 415 ----------------NPHTKPVAFWERVIADINGTDPDVIFLAE 443
Score = 50.7 bits (121), Expect = 3e-06
Identities = 28/165 (16%), Positives = 49/165 (29%), Gaps = 53/165 (32%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVL-----DGLNEFDGTQACFFHDGPRG 370
GT + + V E K GL + LD + + + +FH P G
Sbjct: 317 LGTLDDFDHFVTEAGKLGLEIALDFALQCSPDHPWVHKHPE-----------WFHHRPDG 365
Query: 371 THPLWDSRLFNYSEI----------EVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNH 420
T ++ Y +I + + LR ++D FR D
Sbjct: 366 TIAHAENPPKKYQDIYPIAFDADPDGLATETVRILRHWMDH-GVRIFRVD---------- 414
Query: 421 GCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAE 465
N T + + ++ P++I +AE
Sbjct: 415 ----------------NPHTKPVAFWERVIADINGTDPDVIFLAE 443
Score = 33.7 bits (77), Expect = 0.46
Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 11/70 (15%)
Query: 52 FGTPEQLKYLVDECHKAGLLCFMHVVCAAGDFNNWNRE-----------EFAYKKLDFGK 100
GT + + V E K GL + + W + A+ + K
Sbjct: 317 LGTLDDFDHFVTEAGKLGLEIALDFALQCSPDHPWVHKHPEWFHHRPDGTIAHAENPPKK 376
Query: 101 WELVLPPNPD 110
++ + P D
Sbjct: 377 YQDIYPIAFD 386
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable,
cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus
marinus}
Length = 696
Score = 50.5 bits (121), Expect = 4e-06
Identities = 19/145 (13%), Positives = 43/145 (29%), Gaps = 43/145 (29%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS----------------------KNVLDGL 1066
GT E + LV H + ++LD+ H + +
Sbjct: 308 LGTMEDFEKLVQVLHSRKIKIVLDITMHHTNPCNELFVKALREGENSPYWEMFSFLSPPP 367
Query: 1067 NEFDGTQACFFHDGPRGTHPLWDSRL-------------------FNYSEIEVLRFLLSN 1107
E + + L+ FN+ + + +
Sbjct: 368 KEIVELMLKYIDGEECRSRELYKLDYFRNNKPFYEAFFNIWLMAKFNHDNPRTVDYFIDI 427
Query: 1108 LRWYLEEYQFDGFRFDGVTSMLYHN 1132
++++++ DGFR D V ++++
Sbjct: 428 TKFWIDK-GIDGFRID-VAMGIHYS 450
Score = 50.2 bits (120), Expect = 4e-06
Identities = 20/145 (13%), Positives = 43/145 (29%), Gaps = 43/145 (29%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS----------------------KNVLDGL 353
GT E + LV H + ++LD+ H + +
Sbjct: 308 LGTMEDFEKLVQVLHSRKIKIVLDITMHHTNPCNELFVKALREGENSPYWEMFSFLSPPP 367
Query: 354 NEFDGTQACFFHDGPRGTHPLWDSRL-------------------FNYSEIEVLRFLLSN 394
E + + L+ FN+ + + +
Sbjct: 368 KEIVELMLKYIDGEECRSRELYKLDYFRNNKPFYEAFFNIWLMAKFNHDNPRTVDYFIDI 427
Query: 395 LRWYLDEYQFDGFRFDGVTSMLYHN 419
++++D+ DGFR D V ++++
Sbjct: 428 TKFWIDK-GIDGFRID-VAMGIHYS 450
Score = 31.7 bits (72), Expect = 2.2
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 4/26 (15%)
Query: 52 FGTPEQLKYLVDECHKAGLLCFMHVV 77
GT E + LV H + +V
Sbjct: 308 LGTMEDFEKLVQVLHSRK----IKIV 329
Score = 29.7 bits (67), Expect = 8.0
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 14 FGTPEQLKYLVDECHKAGL 32
GT E + LV H +
Sbjct: 308 LGTMEDFEKLVQVLHSRKI 326
Score = 29.7 bits (67), Expect = 8.0
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 33 FGTPEQLKYLVDECHKAGL 51
GT E + LV H +
Sbjct: 308 LGTMEDFEKLVQVLHSRKI 326
>4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase family
13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A* 2y5e_A*
2x4b_A
Length = 884
Score = 49.8 bits (119), Expect = 6e-06
Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 27/104 (25%)
Query: 1035 LKYLVDECHKAGLYVLLDVVHSH-ASKNVLDGLNEFDGTQ-ACFFHDGPRGT-------- 1084
+ +V ++ GL V++DVV++H S + D + G
Sbjct: 381 YRQMVQALNRIGLRVVMDVVYNHLDSSGPCGISSVLDKIVPGYYVRRDTNGQIENSAAMN 440
Query: 1085 -----HPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 1123
H + V R ++ +L + Y+ DGFRFD
Sbjct: 441 NTASEHFM------------VDRLIVDDLLNWAVNYKVDGFRFD 472
Score = 48.6 bits (116), Expect = 1e-05
Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 27/104 (25%)
Query: 322 LKYLVDECHKAGLYVLLDVVHSH-ASKNVLDGLNEFDGTQ-ACFFHDGPRGT-------- 371
+ +V ++ GL V++DVV++H S + D + G
Sbjct: 381 YRQMVQALNRIGLRVVMDVVYNHLDSSGPCGISSVLDKIVPGYYVRRDTNGQIENSAAMN 440
Query: 372 -----HPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 410
H + V R ++ +L + Y+ DGFRFD
Sbjct: 441 NTASEHFM------------VDRLIVDDLLNWAVNYKVDGFRFD 472
>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase,
alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A
{Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A*
2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*
Length = 485
Score = 47.2 bits (112), Expect = 3e-05
Identities = 25/128 (19%), Positives = 45/128 (35%), Gaps = 18/128 (14%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 375
+GT QL+ V G+ V DVV +H G + + +A + R
Sbjct: 79 YGTRSQLQAAVTSLKNNGIQVYGDVVMNHKG-----GADATEMVRAVEVNPNNRNQEVTG 133
Query: 376 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGV--------TSMLYHNHGCGEGFS 427
+ + ++ RF +++ + FDGV + +Y G G+ +
Sbjct: 134 EYTIEAWT-----RFDFPGRGNTHSSFKWRWYHFDGVDWDQSRRLNNRIYKFRGHGKAWD 188
Query: 428 GHYDEYFG 435
D G
Sbjct: 189 WEVDTENG 196
Score = 46.0 bits (109), Expect = 7e-05
Identities = 25/128 (19%), Positives = 45/128 (35%), Gaps = 18/128 (14%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1088
+GT QL+ V G+ V DVV +H G + + +A + R
Sbjct: 79 YGTRSQLQAAVTSLKNNGIQVYGDVVMNHKG-----GADATEMVRAVEVNPNNRNQEVTG 133
Query: 1089 DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGV--------TSMLYHNHGCGEGFS 1140
+ + ++ RF +++ + FDGV + +Y G G+ +
Sbjct: 134 EYTIEAWT-----RFDFPGRGNTHSSFKWRWYHFDGVDWDQSRRLNNRIYKFRGHGKAWD 188
Query: 1141 GHYDEYFG 1148
D G
Sbjct: 189 WEVDTENG 196
Score = 38.0 bits (88), Expect = 0.019
Identities = 28/169 (16%), Positives = 45/169 (26%), Gaps = 44/169 (26%)
Query: 1001 NQHGHLLDRFGTPEQLKYLVDEC--------------HKAGLFGTPEQLKYLVDECHKAG 1046
NQ G + ++GT QL+ V HK G T V+ ++
Sbjct: 70 NQKGTVRTKYGTRSQLQAAVTSLKNNGIQVYGDVVMNHKGGADATEMVRAVEVNPNNRNQ 129
Query: 1047 LYVLLDVVHSHASKN---VLDGLNEFDGTQACF---------------FHDGPRGTHPLW 1088
+ + + + + F F + G W
Sbjct: 130 EVTGEYTIEAWTRFDFPGRGNTHSSFKWRWYHFDGVDWDQSRRLNNRIYKFRGHGKAWDW 189
Query: 1089 DSRL------------FNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGV 1125
+ + EV+ L + WY DGFR D V
Sbjct: 190 EVDTENGNYDYLMYADIDMDHPEVVNELRNWGVWYTNTLGLDGFRIDAV 238
Score = 38.0 bits (88), Expect = 0.019
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 380 FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGV 412
+ EV+ L + WY + DGFR D V
Sbjct: 206 IDMDHPEVVNELRNWGVWYTNTLGLDGFRIDAV 238
Score = 32.6 bits (74), Expect = 0.91
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 12/62 (19%)
Query: 52 FGTPEQLKYLVDECHKAGLLCFMHVV------------CAAGDFNNWNREEFAYKKLDFG 99
+GT QL+ V G+ + VV A + N NR + +
Sbjct: 79 YGTRSQLQAAVTSLKNNGIQVYGDVVMNHKGGADATEMVRAVEVNPNNRNQEVTGEYTIE 138
Query: 100 KW 101
W
Sbjct: 139 AW 140
Score = 29.9 bits (67), Expect = 6.4
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 14 FGTPEQLKYLVDECHKAGL 32
+GT QL+ V G+
Sbjct: 79 YGTRSQLQAAVTSLKNNGI 97
Score = 29.9 bits (67), Expect = 6.4
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 33 FGTPEQLKYLVDECHKAGL 51
+GT QL+ V G+
Sbjct: 79 YGTRSQLQAAVTSLKNNGI 97
>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability;
2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1
c.1.8.1
Length = 515
Score = 46.8 bits (111), Expect = 4e-05
Identities = 29/122 (23%), Positives = 44/122 (36%), Gaps = 7/122 (5%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 375
+GT Q + H AG+ V DVV H K DG D + D + +
Sbjct: 78 YGTKAQYLQAIQAAHAAGMQVYADVVFDH--KGGADGTEWVDAVEVNPS-DRNQEISGTY 134
Query: 376 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD--GVTSMLYHNHGCGEGFSGHYDEY 433
+ + + S+ +W Y FDG +D S +Y G G+ + D
Sbjct: 135 QIQAWTKFDFPGRGNTYSSFKW--RWYHFDGVDWDESRKLSRIYKFRGIGKAWDWEVDTE 192
Query: 434 FG 435
G
Sbjct: 193 NG 194
Score = 46.0 bits (109), Expect = 7e-05
Identities = 29/122 (23%), Positives = 44/122 (36%), Gaps = 7/122 (5%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1088
+GT Q + H AG+ V DVV H K DG D + D + +
Sbjct: 78 YGTKAQYLQAIQAAHAAGMQVYADVVFDH--KGGADGTEWVDAVEVNPS-DRNQEISGTY 134
Query: 1089 DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD--GVTSMLYHNHGCGEGFSGHYDEY 1146
+ + + S+ +W Y FDG +D S +Y G G+ + D
Sbjct: 135 QIQAWTKFDFPGRGNTYSSFKWRW--YHFDGVDWDESRKLSRIYKFRGIGKAWDWEVDTE 192
Query: 1147 FG 1148
G
Sbjct: 193 NG 194
Score = 36.4 bits (84), Expect = 0.063
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 381 NYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGV 412
+ EV+ L S +WY++ DGFR D V
Sbjct: 205 DMDHPEVVTELKSWGKWYVNTTNIDGFRLDAV 236
Score = 35.6 bits (82), Expect = 0.11
Identities = 30/168 (17%), Positives = 49/168 (29%), Gaps = 43/168 (25%)
Query: 1001 NQHGHLLDRFGTPEQLKYLVDEC--------------HKAGLFGTPEQLKYLVDECHKAG 1046
NQ G + ++GT Q + HK G GT V+ +
Sbjct: 69 NQKGAVRTKYGTKAQYLQAIQAAHAAGMQVYADVVFDHKGGADGTEWVDAVEVNPSDRNQ 128
Query: 1047 LYVLLDVVHSHASKNVLDGLNEFDGTQACFFH-DGPRGTHPLWDSRLF------------ 1093
+ + + N + + ++H DG SR++
Sbjct: 129 EISGTYQIQAWTKFDFPGRGNTYSSFKWRWYHFDGVDWDESRKLSRIYKFRGIGKAWDWE 188
Query: 1094 ----------------NYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGV 1125
+ EV+ L S +WY+ DGFR D V
Sbjct: 189 VDTENGNYDYLMYADLDMDHPEVVTELKSWGKWYVNTTNIDGFRLDAV 236
Score = 32.5 bits (74), Expect = 1.2
Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 12/62 (19%)
Query: 52 FGTPEQLKYLVDECHKAGLLCFMHVV------------CAAGDFNNWNREEFAYKKLDFG 99
+GT Q + H AG+ + VV A + N +R +
Sbjct: 78 YGTKAQYLQAIQAAHAAGMQVYADVVFDHKGGADGTEWVDAVEVNPSDRNQEISGTYQIQ 137
Query: 100 KW 101
W
Sbjct: 138 AW 139
>2fhf_A Pullulanase; multiple domain, beta-alpha-barrel,
alpha-amylase-family, complex with maltotetraose,
hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP:
b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A*
2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A*
Length = 1083
Score = 46.6 bits (110), Expect = 7e-05
Identities = 16/100 (16%), Positives = 37/100 (37%), Gaps = 17/100 (17%)
Query: 1035 LKYLVDECHK-AGLYVLLDVVHSH-ASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRL 1092
+ ++ + G+ V++DVV++H + D + D ++ +
Sbjct: 584 FRTMIQAIKQDLGMNVIMDVVYNHTNAAGPTDRTSVLDKIVPWYYQRLNE------TTGS 637
Query: 1093 FNYS---------EIEVLRFLLSNLRWYLEEYQFDGFRFD 1123
+ + + +L + +Y+ DGFRFD
Sbjct: 638 VESATCCSDSAPEHRMFAKLIADSLAVWTTDYKIDGFRFD 677
Score = 45.8 bits (108), Expect = 1e-04
Identities = 16/100 (16%), Positives = 37/100 (37%), Gaps = 17/100 (17%)
Query: 322 LKYLVDECHK-AGLYVLLDVVHSH-ASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRL 379
+ ++ + G+ V++DVV++H + D + D ++ +
Sbjct: 584 FRTMIQAIKQDLGMNVIMDVVYNHTNAAGPTDRTSVLDKIVPWYYQRLNE------TTGS 637
Query: 380 FNYS---------EIEVLRFLLSNLRWYLDEYQFDGFRFD 410
+ + + +L + +Y+ DGFRFD
Sbjct: 638 VESATCCSDSAPEHRMFAKLIADSLAVWTTDYKIDGFRFD 677
>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A
{Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1
c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A*
2d0g_A* 2d0h_A* 1izk_A
Length = 637
Score = 44.4 bits (105), Expect = 2e-04
Identities = 26/141 (18%), Positives = 44/141 (31%), Gaps = 28/141 (19%)
Query: 1029 FGTPEQLKYLVDECHKAGLY----VLLDVVHSHASKN--VLDGLNEFDGTQACFFHDGPR 1082
FG L+ L+++ H ++LD V +H + D N F A P
Sbjct: 235 FGDNSTLQTLINDIHSTANGPKGYLILDGVFNHTGDSHPWFDKYNNFSSQGAYESQSSPW 294
Query: 1083 GTHPLWDSRLFNY----------------SEIEVLRFLLSNL-----RWYLEEYQFDGFR 1121
+ + + +Y S V + +N + Y DG+R
Sbjct: 295 YNYYTFYTWPDSYASFLGFNSLPKLNYGNSGSAVRGVIYNNSNSVAKTYLNPPYSVDGWR 354
Query: 1122 FDGVTSMLYHNHGCGEGFSGH 1142
D + N G + H
Sbjct: 355 LD-AAQYVDANGNNGSDVTNH 374
Score = 42.5 bits (100), Expect = 0.001
Identities = 35/247 (14%), Positives = 65/247 (26%), Gaps = 62/247 (25%)
Query: 316 FGTPEQLKYLVDECHKAGLY----VLLDVVHSHASKN--VLDGLNEFDGTQACFFHDGPR 369
FG L+ L+++ H ++LD V +H + D N F A P
Sbjct: 235 FGDNSTLQTLINDIHSTANGPKGYLILDGVFNHTGDSHPWFDKYNNFSSQGAYESQSSPW 294
Query: 370 GTHPLWDSRLFNY----------------SEIEVLRFLLSNL-----RWYLDEYQFDGFR 408
+ + + +Y S V + +N + Y DG+R
Sbjct: 295 YNYYTFYTWPDSYASFLGFNSLPKLNYGNSGSAVRGVIYNNSNSVAKTYLNPPYSVDGWR 354
Query: 409 FDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVS 468
D + N G + H + I E
Sbjct: 355 LD-AAQYVDANGNNGSDVTNHQ--------------IWSEFRNAVKGVNSNAAIIGEYWG 399
Query: 469 GMPASCRPVTEGGTGFD----YRL------------EIRPDMSDMTVGTFDAAMNTTEER 512
P T G +D + + + + + ++ FD+ + T
Sbjct: 400 NAN----PWTAQGNQWDAATNFDGFTQPVSEWITGKDYQNNSASISTTQFDSWLRGTRAN 455
Query: 513 FKWLSAD 519
+
Sbjct: 456 YPTNVQQ 462
Score = 35.2 bits (81), Expect = 0.17
Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 52 FGTPEQLKYLVDECHKAGLLCFMHVVCAAGD--FNNWNREEFAYKKLDFGKWE 102
FG L+ L+++ H +++ D FN+ + K + +
Sbjct: 235 FGDNSTLQTLINDIHSTANGPKGYLI---LDGVFNHTGDSHPWFDKYNNFSSQ 284
>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase,
hydrolase, metal-binding, secreted; 1.40A {Bacillus
amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A
1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A
Length = 483
Score = 44.0 bits (104), Expect = 3e-04
Identities = 22/129 (17%), Positives = 41/129 (31%), Gaps = 21/129 (16%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVV-------HSHASKNVLDGLNEFDGTQACFFHDGP 368
+GT +L+ + H + V DVV + ++ + +
Sbjct: 75 YGTKSELQDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAVEVNPANRNQETSEEYQIK 134
Query: 369 RGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD--GVTSMLYHNHGCGEGF 426
T + R Y S+ +W+ Y FDG +D S ++ G G+ +
Sbjct: 135 AWTDFRFPGRGNTY----------SDFKWHW--YHFDGADWDESRKISRIFKFRGEGKAW 182
Query: 427 SGHYDEYFG 435
G
Sbjct: 183 DWEVSSENG 191
Score = 44.0 bits (104), Expect = 3e-04
Identities = 22/129 (17%), Positives = 41/129 (31%), Gaps = 21/129 (16%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVV-------HSHASKNVLDGLNEFDGTQACFFHDGP 1081
+GT +L+ + H + V DVV + ++ + +
Sbjct: 75 YGTKSELQDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAVEVNPANRNQETSEEYQIK 134
Query: 1082 RGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD--GVTSMLYHNHGCGEGF 1139
T + R Y S+ +W+ Y FDG +D S ++ G G+ +
Sbjct: 135 AWTDFRFPGRGNTY----------SDFKWHW--YHFDGADWDESRKISRIFKFRGEGKAW 182
Query: 1140 SGHYDEYFG 1148
G
Sbjct: 183 DWEVSSENG 191
Score = 35.9 bits (83), Expect = 0.088
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 381 NYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGV 412
+Y +V+ WY +E DGFR D
Sbjct: 202 DYDHPDVVAETKKWGIWYANELSLDGFRIDAA 233
Score = 35.6 bits (82), Expect = 0.12
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 1094 NYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGV 1125
+Y +V+ WY E DGFR D
Sbjct: 202 DYDHPDVVAETKKWGIWYANELSLDGFRIDAA 233
Score = 35.6 bits (82), Expect = 0.12
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 12/62 (19%)
Query: 52 FGTPEQLKYLVDECHKAGLLCFMHVV------------CAAGDFNNWNREEFAYKKLDFG 99
+GT +L+ + H + + VV A + N NR + ++
Sbjct: 75 YGTKSELQDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAVEVNPANRNQETSEEYQIK 134
Query: 100 KW 101
W
Sbjct: 135 AW 136
>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A
{Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A
1ud6_A 1ud8_A 1ud3_A
Length = 480
Score = 43.7 bits (103), Expect = 3e-04
Identities = 27/158 (17%), Positives = 44/158 (27%), Gaps = 41/158 (25%)
Query: 296 KFGTPEQLKYLVDEC--------------HKAGLFGTPEQLKYLVDECH----------- 330
K+GT QL+ + HK G T V+ +
Sbjct: 76 KYGTKAQLERAIGSLKSNDINVYGDVVMNHKMGADFTEAVQAVQVNPTNRWQDISGAYTI 135
Query: 331 ----------KAGLYVLLDVVHSHAS------KNVLDGLNEFDGTQACFFHDGPRGTHPL 374
+ Y H + + + + F T + D G +
Sbjct: 136 DAWTGFDFSGRNNAYSDFKWRWFHFNGVDWDQRYQENHIFRFANTNWNWRVDEENGNYDY 195
Query: 375 WDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGV 412
++S EV L W+ DE DG+R D +
Sbjct: 196 LLGSNIDFSHPEVQDELKDWGSWFTDELDLDGYRLDAI 233
Score = 43.7 bits (103), Expect = 4e-04
Identities = 28/166 (16%), Positives = 48/166 (28%), Gaps = 41/166 (24%)
Query: 1001 NQHGHLLDRFGTPEQLKYLVDEC--------------HKAGLFGTPEQLKYLVDECH--- 1043
NQ G + ++GT QL+ + HK G T V+ +
Sbjct: 68 NQKGTVRTKYGTKAQLERAIGSLKSNDINVYGDVVMNHKMGADFTEAVQAVQVNPTNRWQ 127
Query: 1044 ------------------KAGLYVLLDVVHSHAS------KNVLDGLNEFDGTQACFFHD 1079
+ Y H + + + + F T + D
Sbjct: 128 DISGAYTIDAWTGFDFSGRNNAYSDFKWRWFHFNGVDWDQRYQENHIFRFANTNWNWRVD 187
Query: 1080 GPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGV 1125
G + ++S EV L W+ +E DG+R D +
Sbjct: 188 EENGNYDYLLGSNIDFSHPEVQDELKDWGSWFTDELDLDGYRLDAI 233
Score = 42.6 bits (100), Expect = 9e-04
Identities = 20/127 (15%), Positives = 34/127 (26%), Gaps = 19/127 (14%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 375
+GT QL+ + + V DVV +H W
Sbjct: 77 YGTKAQLERAIGSLKSNDINVYGDVVMNHKM----------GADFTEAVQAVQVNPTNRW 126
Query: 376 DSRLFNYSEIEVLRFLL-------SNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSG 428
Y+ F S+ +W + F+G +D + ++
Sbjct: 127 QDISGAYTIDAWTGFDFSGRNNAYSDFKW--RWFHFNGVDWDQRYQENHIFRFANTNWNW 184
Query: 429 HYDEYFG 435
DE G
Sbjct: 185 RVDEENG 191
Score = 32.9 bits (75), Expect = 0.83
Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 52 FGTPEQLKYLVDECHKAGLLCFMHVV---CAAGDFNNW 86
+GT QL+ + + + VV DF
Sbjct: 77 YGTKAQLERAIGSLKSNDINVYGDVVMNHKMGADFTEA 114
Score = 30.2 bits (68), Expect = 5.1
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 14 FGTPEQLKYLVDECHKAGL 32
+GT QL+ + +
Sbjct: 77 YGTKAQLERAIGSLKSNDI 95
Score = 30.2 bits (68), Expect = 5.1
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 33 FGTPEQLKYLVDECHKAGL 51
+GT QL+ + +
Sbjct: 77 YGTKAQLERAIGSLKSNDI 95
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase;
HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis}
SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A*
1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Length = 448
Score = 43.9 bits (103), Expect = 3e-04
Identities = 29/196 (14%), Positives = 54/196 (27%), Gaps = 38/196 (19%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN-------VLDGLNEFDGTQACFFHD-G 367
G Q +V+ C AG+ + +D + +H + G F FH+
Sbjct: 61 GGNRAQFIDMVNRCSAAGVDIYVDTLINHMAAGSGTGTAGNSFGNKSFPIYSPQDFHESC 120
Query: 368 PRGTHPLWDSRL------------FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD----- 410
+ R + + V + + + GFRFD
Sbjct: 121 TINNSDYGNDRYRVQNCELVGLADLDTASNYVQNTIAAYINDLQA-IGVKGFRFDASKHV 179
Query: 411 ------GVTSMLYHNHGC-GEGFSG-----HYDEYFGLNVDTDALIYLMVANKFLHDKYP 458
+ + + + E EY + T+ + N F +
Sbjct: 180 AASDIQSLMAKVNGSPVVFQEVIDQGGEAVGASEYLSTGLVTEFKYSTELGNTFRNGSLA 239
Query: 459 EIITIAEDVSGMPASC 474
+ E MP+S
Sbjct: 240 WLSNFGEGWGFMPSSS 255
Score = 43.5 bits (102), Expect = 3e-04
Identities = 30/196 (15%), Positives = 56/196 (28%), Gaps = 38/196 (19%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN-------VLDGLNEFDGTQACFFHD-G 1080
G Q +V+ C AG+ + +D + +H + G F FH+
Sbjct: 61 GGNRAQFIDMVNRCSAAGVDIYVDTLINHMAAGSGTGTAGNSFGNKSFPIYSPQDFHESC 120
Query: 1081 PRGTHPLWDSRL------------FNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD----- 1123
+ R + + V + + + L+ GFRFD
Sbjct: 121 TINNSDYGNDRYRVQNCELVGLADLDTASNYVQNTIAAYIND-LQAIGVKGFRFDASKHV 179
Query: 1124 ------GVTSMLYHNHGC-GEGFSG-----HYDEYFGLNVDTDALIYLMVANKFLHDKYP 1171
+ + + + E EY + T+ + N F +
Sbjct: 180 AASDIQSLMAKVNGSPVVFQEVIDQGGEAVGASEYLSTGLVTEFKYSTELGNTFRNGSLA 239
Query: 1172 EIITIAEDVSGMPASC 1187
+ E MP+S
Sbjct: 240 WLSNFGEGWGFMPSSS 255
Score = 30.1 bits (67), Expect = 6.5
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 52 FGTPEQLKYLVDECHKAGLLCFMHVV 77
G Q +V+ C AG+ ++ +
Sbjct: 61 GGNRAQFIDMVNRCSAAGVDIYVDTL 86
>1gjw_A Maltodextrin glycosyltransferase; alpha-amylase, maltosyltransferase;
HET: MAL GLC; 2.1A {Thermotoga maritima} SCOP: b.71.1.1
c.1.8.1 PDB: 1gju_A*
Length = 637
Score = 42.9 bits (100), Expect = 8e-04
Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1088
F E+ K V+ CH G+ V+LD + A+++ D + T P
Sbjct: 178 FKVDEEFKAFVEACHILGIRVILDFIPRTAARDSDLIREHPDWFYWIKVEELADYTPPRA 237
Query: 1089 DSRLFNYSEIEVLRFLLS--NLRWYLEEYQFD 1118
+ F + + L + + N++ +L+++
Sbjct: 238 EELPFKVPDEDELEIIYNKENVKRHLKKFTLP 269
Score = 42.9 bits (100), Expect = 8e-04
Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 375
F E+ K V+ CH G+ V+LD + A+++ D + T P
Sbjct: 178 FKVDEEFKAFVEACHILGIRVILDFIPRTAARDSDLIREHPDWFYWIKVEELADYTPPRA 237
Query: 376 DSRLFNYSEIEVLRFLLS--NLRWYLDEYQFD 405
+ F + + L + + N++ +L ++
Sbjct: 238 EELPFKVPDEDELEIIYNKENVKRHLKKFTLP 269
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like,
antiparallel beta-sheet, greek terminal domain,
extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Length = 424
Score = 41.3 bits (97), Expect = 0.002
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 315 LFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN 348
FG+ E L+ K + V+LD+ ++ +N
Sbjct: 77 NFGSKEDFDSLLQSAKKKSIRVILDLTPNYRGEN 110
Score = 41.3 bits (97), Expect = 0.002
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 1028 LFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN 1061
FG+ E L+ K + V+LD+ ++ +N
Sbjct: 77 NFGSKEDFDSLLQSAKKKSIRVILDLTPNYRGEN 110
>3aie_A Glucosyltransferase-SI; beta-alpha-barrels; HET: MES; 2.10A
{Streptococcus mutans} PDB: 3aic_A* 3aib_A*
Length = 844
Score = 41.7 bits (97), Expect = 0.002
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 346
+GT + L + H G+ V+ D V
Sbjct: 689 YGTADDLVKAIKALHSKGIKVMADWVPDQMY 719
Score = 41.7 bits (97), Expect = 0.002
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 1059
+GT + L + H G+ V+ D V
Sbjct: 689 YGTADDLVKAIKALHSKGIKVMADWVPDQMY 719
Score = 32.1 bits (72), Expect = 1.7
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 52 FGTPEQLKYLVDECHKAGLLCFMHVV 77
+GT + L + H G+ V
Sbjct: 689 YGTADDLVKAIKALHSKGIKVMADWV 714
>3ucq_A Amylosucrase; thermostability, amylose synthesis, sucrose
isomerization, beta/alpha-barrel, carbohydrate binding,
transferase; 1.97A {Deinococcus geothermalis} PDB:
3uer_A*
Length = 655
Score = 40.3 bits (94), Expect = 0.004
Identities = 25/193 (12%), Positives = 51/193 (26%), Gaps = 61/193 (31%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS------KNVLDGLNEF--------DGTQA 361
GT + L L G+ ++LD+V +H + + G ++ D
Sbjct: 157 LGTMDDLSALARALRGRGISLVLDLVLNHVAREHAWAQKARAGDPKYRAYFHLFPDRRGP 216
Query: 362 CFFHDGPRGTHPL-------WDSRL------------------FNYSEIEVLRFLLSNLR 396
F P WD + N++ +V + +
Sbjct: 217 DAFEATLPEIFPDFAPGNFSWDEEIGEGEGGWVWTTFNSYQWDLNWANPDVFLEFVDIIL 276
Query: 397 WYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNV----DTDALIYLMVANKF 452
+ + + FR D + + + G + + L +
Sbjct: 277 YLANR-GVEVFRLDAIAFIW---------------KRLGTDCQNQPEVHHLTRAL--RAA 318
Query: 453 LHDKYPEIITIAE 465
P + AE
Sbjct: 319 ARIVAPAVAFKAE 331
Score = 39.5 bits (92), Expect = 0.008
Identities = 25/193 (12%), Positives = 50/193 (25%), Gaps = 61/193 (31%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS------KNVLDGLNEF--------DGTQA 1074
GT + L L G+ ++LD+V +H + + G ++ D
Sbjct: 157 LGTMDDLSALARALRGRGISLVLDLVLNHVAREHAWAQKARAGDPKYRAYFHLFPDRRGP 216
Query: 1075 CFFHDGPRGTHPL-------WDSRL------------------FNYSEIEVLRFLLSNLR 1109
F P WD + N++ +V + +
Sbjct: 217 DAFEATLPEIFPDFAPGNFSWDEEIGEGEGGWVWTTFNSYQWDLNWANPDVFLEFVDIIL 276
Query: 1110 WYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNV----DTDALIYLMVANKF 1165
+ + FR D + + + G + + L +
Sbjct: 277 YLANR-GVEVFRLDAIAFIW---------------KRLGTDCQNQPEVHHLTRAL--RAA 318
Query: 1166 LHDKYPEIITIAE 1178
P + AE
Sbjct: 319 ARIVAPAVAFKAE 331
>1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism,
4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio
molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A
1viw_A*
Length = 471
Score = 39.4 bits (91), Expect = 0.008
Identities = 22/124 (17%), Positives = 35/124 (28%), Gaps = 28/124 (22%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-----------DGTQACFF 364
G + C+ AG+ + +D V +H + G + + F
Sbjct: 71 SGDESAFTDMTRRCNDAGVRIYVDAVINHMTGMNGVGTSGSSADHDGMNYPAVPYGSGDF 130
Query: 365 H---------DGPRGTH----PLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDG 411
H D + L D N V L+ + +D GFR D
Sbjct: 131 HSPCEVNNYQDADNVRNCELVGLRD---LNQGSDYVRGVLIDYMNHMID-LGVAGFRVDA 186
Query: 412 VTSM 415
M
Sbjct: 187 AKHM 190
Score = 39.4 bits (91), Expect = 0.009
Identities = 21/124 (16%), Positives = 35/124 (28%), Gaps = 28/124 (22%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-----------DGTQACFF 1077
G + C+ AG+ + +D V +H + G + + F
Sbjct: 71 SGDESAFTDMTRRCNDAGVRIYVDAVINHMTGMNGVGTSGSSADHDGMNYPAVPYGSGDF 130
Query: 1078 H---------DGPRGTH----PLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDG 1124
H D + L D N V L+ + + + GFR D
Sbjct: 131 HSPCEVNNYQDADNVRNCELVGLRD---LNQGSDYVRGVLIDYMNH-MIDLGVAGFRVDA 186
Query: 1125 VTSM 1128
M
Sbjct: 187 AKHM 190
Score = 32.0 bits (72), Expect = 1.3
Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 13/60 (21%)
Query: 52 FGTPEQLKYLVDECHKAGLLCFMHVVC-------------AAGDFNNWNREEFAYKKLDF 98
G + C+ AG+ ++ V ++ D + N Y DF
Sbjct: 71 SGDESAFTDMTRRCNDAGVRIYVDAVINHMTGMNGVGTSGSSADHDGMNYPAVPYGSGDF 130
>3czg_A Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; 1.80A
{Xanthomonas axonopodis PV} PDB: 3cze_A* 3czl_A* 3czk_A*
2wpg_A
Length = 644
Score = 38.7 bits (90), Expect = 0.016
Identities = 25/186 (13%), Positives = 46/186 (24%), Gaps = 51/186 (27%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS------KNVLDGLNEF--------DGTQA 361
G+ + L L +AG+ + D V +H + + G + D T
Sbjct: 152 LGSNDDLVALTSRLREAGISLCADFVLNHTADDHAWAQAARAGDARYLDYYHHFADRTVP 211
Query: 362 CFFHDGPRGTHPL-------WDSRL--------------FNYSEIEVLRFLLSNLRWYLD 400
+ P W N+S V + + +
Sbjct: 212 DRYEATLGQVFPHTAPGNFTWVDDTAQWMWTTFYPYQWDLNWSNPAVFGDMALAMLRLAN 271
Query: 401 EYQFDGFRFDGVTSML-YHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPE 459
+ FR D + C + E L+ + P
Sbjct: 272 L-GVEAFRLDSTAYLWKRIGTDC-----MNQSE-------AHTLLVAL--RAVTDIVAPA 316
Query: 460 IITIAE 465
++ AE
Sbjct: 317 VVMKAE 322
Score = 37.9 bits (88), Expect = 0.027
Identities = 25/186 (13%), Positives = 45/186 (24%), Gaps = 51/186 (27%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS------KNVLDGLNEF--------DGTQA 1074
G+ + L L +AG+ + D V +H + + G + D T
Sbjct: 152 LGSNDDLVALTSRLREAGISLCADFVLNHTADDHAWAQAARAGDARYLDYYHHFADRTVP 211
Query: 1075 CFFHDGPRGTHPL-------WDSRL--------------FNYSEIEVLRFLLSNLRWYLE 1113
+ P W N+S V + +
Sbjct: 212 DRYEATLGQVFPHTAPGNFTWVDDTAQWMWTTFYPYQWDLNWSNPAVFGDMALAMLRLAN 271
Query: 1114 EYQFDGFRFDGVTSML-YHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPE 1172
+ FR D + C + E L+ + P
Sbjct: 272 L-GVEAFRLDSTAYLWKRIGTDC-----MNQSE-------AHTLLVAL--RAVTDIVAPA 316
Query: 1173 IITIAE 1178
++ AE
Sbjct: 317 VVMKAE 322
>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A
{Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1
Length = 488
Score = 37.2 bits (87), Expect = 0.037
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 346
+GT E LV+ H+ G+ V++D+ +H S
Sbjct: 78 YGTLEDFHKLVEAAHQRGIKVIIDLPINHTS 108
Score = 37.2 bits (87), Expect = 0.037
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 1059
+GT E LV+ H+ G+ V++D+ +H S
Sbjct: 78 YGTLEDFHKLVEAAHQRGIKVIIDLPINHTS 108
>1hx0_A Alpha amylase (PPA); inhibitor, carbohydrate, pancreas, hydrolase;
HET: GLC AC1 BGC MAL; 1.38A {Sus scrofa} SCOP: b.71.1.1
c.1.8.1 PDB: 1wo2_A* 1ua3_A* 1kxq_A 1kxt_A 1kxv_A
1jfh_A* 1vah_A* 1ppi_A* 3l2m_A* 3l2l_A* 1dhk_A* 1ose_A*
1pig_A* 1pif_A* 1bvn_P 3oli_A* 3old_A* 3olg_A* 3ole_A*
3ij8_A* ...
Length = 496
Score = 36.7 bits (84), Expect = 0.049
Identities = 22/134 (16%), Positives = 35/134 (26%), Gaps = 38/134 (28%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQAC------------- 362
G + + +V C+ G+ + +D V +H + C
Sbjct: 73 SGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGNREFPAVPYS 132
Query: 363 --FFHDGPRGTH-------------------PLWDSRLFNYSEIEVLRFLLSNLRWYLDE 401
F+DG T L D + V + L +D
Sbjct: 133 AWDFNDGKCKTASGGIESYNDPYQVRDCQLVGLLD---LALEKDYVRSMIADYLNKLID- 188
Query: 402 YQFDGFRFDGVTSM 415
GFR D M
Sbjct: 189 IGVAGFRIDASKHM 202
Score = 36.7 bits (84), Expect = 0.054
Identities = 22/134 (16%), Positives = 35/134 (26%), Gaps = 38/134 (28%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQAC------------- 1075
G + + +V C+ G+ + +D V +H + C
Sbjct: 73 SGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGNREFPAVPYS 132
Query: 1076 --FFHDGPRGTH-------------------PLWDSRLFNYSEIEVLRFLLSNLRWYLEE 1114
F+DG T L D + V + L L +
Sbjct: 133 AWDFNDGKCKTASGGIESYNDPYQVRDCQLVGLLD---LALEKDYVRSMIADYLNK-LID 188
Query: 1115 YQFDGFRFDGVTSM 1128
GFR D M
Sbjct: 189 IGVAGFRIDASKHM 202
Score = 30.2 bits (67), Expect = 5.2
Identities = 8/53 (15%), Positives = 16/53 (30%), Gaps = 2/53 (3%)
Query: 52 FGTPEQLKYLVDECHKAGLLCFMHVVC--AAGDFNNWNREEFAYKKLDFGKWE 102
G + + +V C+ G+ ++ V G + G E
Sbjct: 73 SGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGNRE 125
>1g5a_A Amylosucrase; glycosyltransferase, glycoside hydrolase,
(beta-alpha)8 barrel; HET: EPE; 1.40A {Neisseria
polysaccharea} SCOP: b.71.1.1 c.1.8.1 PDB: 1jg9_A*
1mw1_A* 1mw2_A* 1mw3_A* 3ueq_A* 1jgi_A* 1mvy_A* 1mw0_A*
1s46_A* 1zs2_A*
Length = 628
Score = 36.7 bits (85), Expect = 0.052
Identities = 32/191 (16%), Positives = 52/191 (27%), Gaps = 62/191 (32%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS------KNVLDGLNEFD------------ 357
GT L+ ++ H+AG+ ++D + +H S + G FD
Sbjct: 159 LGTIGDLREVIAALHEAGISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMP 218
Query: 358 ------------GTQACFFHDGPRGTHPL-------WDSRLFNYSEIEVLRFLLSNLRWY 398
F G WD NYS V R + + +
Sbjct: 219 DQYDRTLREIFPDQHPGGFSQLEDGRWVWTTFNSFQWD---LNYSNPWVFRAMAGEMLFL 275
Query: 399 LDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNV----DTDALIYLMVANKFLH 454
+ D R D V + + G + ALI N +
Sbjct: 276 ANL-GVDILRMDAVAFIW---------------KQMGTSCENLPQAHALIRAF--NAVMR 317
Query: 455 DKYPEIITIAE 465
P + +E
Sbjct: 318 IAAPAVFFKSE 328
Score = 36.0 bits (83), Expect = 0.096
Identities = 32/191 (16%), Positives = 51/191 (26%), Gaps = 62/191 (32%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS------KNVLDGLNEFD------------ 1070
GT L+ ++ H+AG+ ++D + +H S + G FD
Sbjct: 159 LGTIGDLREVIAALHEAGISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMP 218
Query: 1071 ------------GTQACFFHDGPRGTHPL-------WDSRLFNYSEIEVLRFLLSNLRWY 1111
F G WD NYS V R + + +
Sbjct: 219 DQYDRTLREIFPDQHPGGFSQLEDGRWVWTTFNSFQWD---LNYSNPWVFRAMAGEMLFL 275
Query: 1112 LEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNV----DTDALIYLMVANKFLH 1167
D R D V + + G + ALI N +
Sbjct: 276 ANL-GVDILRMDAVAFIW---------------KQMGTSCENLPQAHALIRAF--NAVMR 317
Query: 1168 DKYPEIITIAE 1178
P + +E
Sbjct: 318 IAAPAVFFKSE 328
>1iv8_A Maltooligosyl trehalose synthase; beta alpha barrel, intramolecular
transglucosylation, isomerase; HET: MLZ MLY; 1.90A
{Sulfolobus acidocaldarius} SCOP: b.71.1.1 c.1.8.1
Length = 720
Score = 36.8 bits (85), Expect = 0.057
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 346
G ++ + L++ H GL ++ D+V +H +
Sbjct: 62 LGGEKEYRRLIETAHTIGLGIIQDIVPNHMA 92
Score = 36.8 bits (85), Expect = 0.057
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 1059
G ++ + L++ H GL ++ D+V +H +
Sbjct: 62 LGGEKEYRRLIETAHTIGLGIIQDIVPNHMA 92
>3hje_A 704AA long hypothetical glycosyltransferase; trehalose
biosynthesis, maltooligoside trehalose synthase (M
family 13 glycoside hydrolases; 1.90A {Sulfolobus
tokodaii str}
Length = 704
Score = 36.6 bits (85), Expect = 0.063
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 346
G E+ L+DE GL ++ D+V +H +
Sbjct: 60 LGGEEEYIRLIDEAKSKGLGIIQDIVPNHMA 90
Score = 36.6 bits (85), Expect = 0.063
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 1059
G E+ L+DE GL ++ D+V +H +
Sbjct: 60 LGGEEEYIRLIDEAKSKGLGIIQDIVPNHMA 90
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose,
(beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga
maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Length = 441
Score = 36.4 bits (85), Expect = 0.064
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 315 LFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 346
+G+ + K +++ H +G+ V+LD+ H
Sbjct: 65 EYGSEREFKEMIEAFHDSGIKVVLDLPIHHTG 96
Score = 36.4 bits (85), Expect = 0.064
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 1028 LFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 1059
+G+ + K +++ H +G+ V+LD+ H
Sbjct: 65 EYGSEREFKEMIEAFHDSGIKVVLDLPIHHTG 96
>2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase;
2.20A {Streptococcus mutans} PDB: 2zid_A*
Length = 543
Score = 35.2 bits (82), Expect = 0.16
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 346
FG + L+ + G+ +++D+V +H S
Sbjct: 75 FGNMADMDNLLTQAKMRGIKIIMDLVVNHTS 105
Score = 35.2 bits (82), Expect = 0.16
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 1059
FG + L+ + G+ +++D+V +H S
Sbjct: 75 FGNMADMDNLLTQAKMRGIKIIMDLVVNHTS 105
>1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel
glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1
c.1.8.1
Length = 558
Score = 35.2 bits (82), Expect = 0.18
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 346
FGT E L+ E H+ + +++D+V +H S
Sbjct: 75 FGTMEDWDELLHEMHERNMKLMMDLVVNHTS 105
Score = 35.2 bits (82), Expect = 0.18
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 1059
FGT E L+ E H+ + +++D+V +H S
Sbjct: 75 FGTMEDWDELLHEMHERNMKLMMDLVVNHTS 105
>2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle,
hydrolase; 2.00A {Geobacillus SP}
Length = 555
Score = 34.8 bits (81), Expect = 0.19
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 346
FGT + L+ + H+ GL V+LD+V +H S
Sbjct: 75 FGTMDDFDELLAQAHRRGLKVILDLVINHTS 105
Score = 34.8 bits (81), Expect = 0.19
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 1059
FGT + L+ + H+ GL V+LD+V +H S
Sbjct: 75 FGTMDDFDELLAQAHRRGLKVILDLVINHTS 105
>3k8k_A Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, beta-sandwich,
membrane protein; 2.20A {Bacteroides thetaiotaomicron}
PDB: 3k8m_A* 3k8l_A*
Length = 669
Score = 35.1 bits (81), Expect = 0.20
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 346
GT LV E H G+ + LD V +H
Sbjct: 103 LGTESDFDRLVTEAHNRGIKIYLDYVMNHTG 133
Score = 35.1 bits (81), Expect = 0.20
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 1059
GT LV E H G+ + LD V +H
Sbjct: 103 LGTESDFDRLVTEAHNRGIKIYLDYVMNHTG 133
>3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A
{Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A*
3axh_A*
Length = 589
Score = 34.9 bits (81), Expect = 0.21
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 346
+GT E L+++ HK G+ + D+V +H S
Sbjct: 84 YGTNEDCFALIEKTHKLGMKFITDLVINHCS 114
Score = 34.9 bits (81), Expect = 0.21
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 1059
+GT E L+++ HK G+ + D+V +H S
Sbjct: 84 YGTNEDCFALIEKTHKLGMKFITDLVINHCS 114
>1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization,
isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1
Length = 570
Score = 34.8 bits (81), Expect = 0.22
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 346
+GT E LV E K + +++DVV +H S
Sbjct: 89 YGTMEDFDSLVAEMKKRNMRLMIDVVINHTS 119
Score = 34.8 bits (81), Expect = 0.22
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 1059
+GT E LV E K + +++DVV +H S
Sbjct: 89 YGTMEDFDSLVAEMKKRNMRLMIDVVINHTS 119
>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family,
(beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila}
PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A*
3gbe_A* 3gbd_A*
Length = 557
Score = 34.8 bits (81), Expect = 0.22
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 346
+GT E L+ E K G+ +++DVV +H+S
Sbjct: 76 YGTMEDFDRLMAELKKRGMRLMVDVVINHSS 106
Score = 34.8 bits (81), Expect = 0.22
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 1059
+GT E L+ E K G+ +++DVV +H+S
Sbjct: 76 YGTMEDFDRLMAELKKRGMRLMVDVVINHSS 106
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.33
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 22/48 (45%)
Query: 687 IEKFTTSYNKYGIHVQADNSVRCFEWAPSAQQLYLTGYNAVQLMAIME 734
++K S Y AD+S AP A+ + A ME
Sbjct: 22 LKKLQASLKLY-----ADDS------AP-----------ALAIKATME 47
Score = 30.7 bits (68), Expect = 1.8
Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 19/44 (43%)
Query: 1283 ERNN----ENNMKRYIQTESNMNGFGIQTLPTQSP-LYLVAKIE 1321
E+ + ++K Y +P L + A +E
Sbjct: 18 EKQALKKLQASLKLYA--------------DDSAPALAIKATME 47
>2p9b_A Possible prolidase; protein structure initiative II, PSI-2,
amidohydrolase, structural genomics; 1.70A
{Bifidobacterium longum NCC2705} SCOP: b.92.1.10
c.1.9.17
Length = 458
Score = 33.2 bits (76), Expect = 0.67
Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 318 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL 353
+ EQ++ + DE H+ G+ V H+ + + V L
Sbjct: 225 SVEQMRAICDEAHQYGVIV---GAHAQSPEGVRRSL 257
Score = 33.2 bits (76), Expect = 0.67
Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 1031 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL 1066
+ EQ++ + DE H+ G+ V H+ + + V L
Sbjct: 225 SVEQMRAICDEAHQYGVIV---GAHAQSPEGVRRSL 257
Score = 29.7 bits (67), Expect = 8.3
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 54 TPEQLKYLVDECHKAGLLCFMHVVCAAG 81
+ EQ++ + DE H+ G++ H G
Sbjct: 225 SVEQMRAICDEAHQYGVIVGAHAQSPEG 252
>1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5,
thermomonospora fusca; 1.50A {Thermobifida fusca} SCOP:
c.1.8.3 PDB: 2man_A* 3man_A*
Length = 302
Score = 32.4 bits (74), Expect = 0.89
Identities = 6/27 (22%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 319 PEQLKYLVDECHKAGLYVLLDVVHSHA 345
P + ++ C + L +L+ VH
Sbjct: 64 PSDVANVISLCKQNRLICMLE-VHDTT 89
Score = 32.4 bits (74), Expect = 0.89
Identities = 6/27 (22%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 1032 PEQLKYLVDECHKAGLYVLLDVVHSHA 1058
P + ++ C + L +L+ VH
Sbjct: 64 PSDVANVISLCKQNRLICMLE-VHDTT 89
>3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural
genomics, protein structure initiative, PSI; 2.63A
{Unidentified} PDB: 3lwy_A* 3n2c_A*
Length = 423
Score = 32.3 bits (74), Expect = 1.00
Identities = 7/37 (18%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 318 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLN 354
+ ++++ +VDE A YV + H++ + + +
Sbjct: 210 SEDEIRAIVDEAEAANTYV---MAHAYTGRAIARAVR 243
Score = 32.3 bits (74), Expect = 1.00
Identities = 7/37 (18%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 1031 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLN 1067
+ ++++ +VDE A YV + H++ + + +
Sbjct: 210 SEDEIRAIVDEAEAANTYV---MAHAYTGRAIARAVR 243
>3gnh_A L-lysine, L-arginine carboxypeptidase CC2672; N-methyl phosphonate
derivative of L- arginine, hydrolase; HET: KCX M3R;
1.70A {Caulobacter crescentus CB15} PDB: 3mtw_A*
Length = 403
Score = 32.3 bits (74), Expect = 1.0
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 318 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLN 354
T E++K +VDE H AG+ V H+H + + + +
Sbjct: 205 TYEEMKAVVDEAHMAGIKV---AAHAHGASGIREAVR 238
Score = 32.3 bits (74), Expect = 1.0
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 1031 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLN 1067
T E++K +VDE H AG+ V H+H + + + +
Sbjct: 205 TYEEMKAVVDEAHMAGIKV---AAHAHGASGIREAVR 238
>2cks_A Endoglucanase E-5; carbohydrate metabolism, polysaccharide
degradation, glycoside hydrolase family 5, hydrolase,
glycosidase; HET: BEN; 1.6A {Thermobifida fusca} PDB:
2ckr_A*
Length = 306
Score = 32.1 bits (73), Expect = 1.1
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 320 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF 356
+++ L+D GLYV++D H + L+
Sbjct: 80 DRMHQLIDMATARGLYVIVD-WHILTPGDPHYNLDRA 115
Score = 32.1 bits (73), Expect = 1.1
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 1033 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF 1069
+++ L+D GLYV++D H + L+
Sbjct: 80 DRMHQLIDMATARGLYVIVD-WHILTPGDPHYNLDRA 115
>1ceo_A Cellulase CELC; glycosyl hydrolase, family A/5 of glycosyl
hydrolases, cellulose degradation; 1.90A {Clostridium
thermocellum} SCOP: c.1.8.3 PDB: 1cen_A 1cec_A
Length = 343
Score = 31.8 bits (72), Expect = 1.4
Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 21/76 (27%)
Query: 319 PEQLKYL---VDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 375
+ L Y+ ++ C K L ++LD+ H G + F P
Sbjct: 65 EDGLSYIDRCLEWCKKYNLGLVLDMHH-------------APGYRFQDFKTSTLFEDPNQ 111
Query: 376 DSRLFNYSEIEVLRFL 391
R +++ RFL
Sbjct: 112 QKRF-----VDIWRFL 122
Score = 31.8 bits (72), Expect = 1.4
Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 21/76 (27%)
Query: 1032 PEQLKYL---VDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1088
+ L Y+ ++ C K L ++LD+ H G + F P
Sbjct: 65 EDGLSYIDRCLEWCKKYNLGLVLDMHH-------------APGYRFQDFKTSTLFEDPNQ 111
Query: 1089 DSRLFNYSEIEVLRFL 1104
R +++ RFL
Sbjct: 112 QKRF-----VDIWRFL 122
>3vmn_A Dextranase; TIM barrel, immunoglobrin fold, greek-KEY-motif,
glycoside H family 66, hydrolase; 1.60A {Streptococcus
mutans} PDB: 3vmo_A* 3vmp_A*
Length = 643
Score = 31.8 bits (71), Expect = 1.7
Identities = 30/214 (14%), Positives = 59/214 (27%), Gaps = 30/214 (14%)
Query: 322 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFD---------GTQACFFHDGPRGTH 372
+K LV+ H+ G +L + + N L + + Q
Sbjct: 193 VKALVNRVHQTGAVAMLYNMILAQNANETAVLPDTEYIYNYETGGYGQNGQVMTYSIDDK 252
Query: 373 PLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDE 432
P +N ++ + + + FDG++ D + G +
Sbjct: 253 P--LQYYYNPLSKSWQNYISNAMAQAMKNGGFDGWQGDTI------------GDNRVLSH 298
Query: 433 YFGLNVDTDALIYLMVA-NKFLHD---KYPEIITIAEDVSGMPASCRPVTEGGTGFDYRL 488
+ D L +FL+ K P+ DV+G + Y
Sbjct: 299 NQKDSRDIAHSFMLSDVYAEFLNKMKEKLPQYYLTLNDVNGENI--SKLANSKQDVIY-N 355
Query: 489 EIRPDMSDMTVGTFDAAMNTTEERFKWLSADPGY 522
E+ P + + + R + G
Sbjct: 356 ELWPFGTSALGNRPQESYGDLKARVDQVRQATGK 389
Score = 29.9 bits (66), Expect = 6.7
Identities = 26/178 (14%), Positives = 51/178 (28%), Gaps = 29/178 (16%)
Query: 1035 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFD---------GTQACFFHDGPRGTH 1085
+K LV+ H+ G +L + + N L + + Q
Sbjct: 193 VKALVNRVHQTGAVAMLYNMILAQNANETAVLPDTEYIYNYETGGYGQNGQVMTYSIDDK 252
Query: 1086 PLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDE 1145
P +N ++ + + ++ FDG++ D + G +
Sbjct: 253 P--LQYYYNPLSKSWQNYISNAMAQAMKNGGFDGWQGDTI------------GDNRVLSH 298
Query: 1146 YFGLNVDTDALIYLMVA-NKFLHD---KYPEIITIAEDVSGMPASCRPVTEGGTGFDY 1199
+ D L +FL+ K P+ DV+G + Y
Sbjct: 299 NQKDSRDIAHSFMLSDVYAEFLNKMKEKLPQYYLTLNDVNGENI--SKLANSKQDVIY 354
>3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A
{Leuconostoc mesenteroides} PDB: 3tto_A*
Length = 1108
Score = 32.0 bits (72), Expect = 1.8
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 317 GTPEQLKYLVDECHKAGLYVLLDVVHSH 344
GT L+ + H A + V+ DVV +
Sbjct: 910 GTDGDLRATIQALHHANMQVMADVVDNQ 937
Score = 32.0 bits (72), Expect = 1.8
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 1030 GTPEQLKYLVDECHKAGLYVLLDVVHSH 1057
GT L+ + H A + V+ DVV +
Sbjct: 910 GTDGDLRATIQALHHANMQVMADVVDNQ 937
>2r8c_A Putative amidohydrolase; unknown source, sargasso SEA, structural
genomics, protein structure initiative, PSI; 2.31A
{Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3mkv_A*
Length = 426
Score = 31.6 bits (72), Expect = 2.1
Identities = 6/37 (16%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 318 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLN 354
+ ++++ +V E G YV + H++ + +
Sbjct: 213 SEDEIRAIVAEAQGRGTYV---LAHAYTPAAIARAVR 246
Score = 31.6 bits (72), Expect = 2.1
Identities = 6/37 (16%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 1031 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLN 1067
+ ++++ +V E G YV + H++ + +
Sbjct: 213 SEDEIRAIVAEAQGRGTYV---LAHAYTPAAIARAVR 246
>2wyh_A Alpha-mannosidase; hydrolase, glycosidase, glycoside hydrolase;
1.90A {Streptococcus pyogenes} PDB: 2wyi_A*
Length = 923
Score = 31.4 bits (70), Expect = 2.6
Identities = 33/161 (20%), Positives = 52/161 (32%), Gaps = 12/161 (7%)
Query: 268 AFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 327
F+++ + T + LI C+++G L Y D FG Q L
Sbjct: 107 PFYILQDDFLTSSESNVRNMLIGKEDCDRWGASVPLGYFPDT------FGNMGQTPQL-- 158
Query: 328 ECHKAGL--YVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEI 385
KAGL + N +D ++ + GP + L YS
Sbjct: 159 -MLKAGLQAAAFGRGIRPTGFNNQVDTSEKYSSQFSEISWQGPDNSRILGLLFANWYSNG 217
Query: 386 EVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGF 426
+ + R + D+ D RF T L +GC
Sbjct: 218 NEIPTTEAEARLFWDKKLADAERF-ASTKHLLMMNGCDHQP 257
>3pzt_A Endoglucanase; alpha/beta barrel, glycosyl hydrolase, cellulose
binding, HY; 1.97A {Bacillus subtilis subsp} PDB: 3pzu_A
3pzv_A
Length = 327
Score = 31.0 bits (70), Expect = 2.7
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 320 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF 356
++K V+ + G+YV++D H N +
Sbjct: 105 NKVKEAVEAAKELGIYVIID-WHILNDGNPNQNKEKA 140
Score = 31.0 bits (70), Expect = 2.7
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 1033 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF 1069
++K V+ + G+YV++D H N +
Sbjct: 105 NKVKEAVEAAKELGIYVIID-WHILNDGNPNQNKEKA 140
>3be7_A Zn-dependent arginine carboxypeptidase; unknown source,
amidohydrolase, sargasso SEA, structural GEN protein
structure initiative, PSI; HET: ARG; 2.30A
{Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3dug_A*
Length = 408
Score = 31.1 bits (71), Expect = 2.8
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 318 TPEQLKYLVDECHKAGLYVLLDVVHSHASK 347
T E++K +VDE H G+ V H+H
Sbjct: 204 TLEEMKAIVDEAHNHGMKV---AAHAHGLI 230
Score = 31.1 bits (71), Expect = 2.8
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 1031 TPEQLKYLVDECHKAGLYVLLDVVHSHASK 1060
T E++K +VDE H G+ V H+H
Sbjct: 204 TLEEMKAIVDEAHNHGMKV---AAHAHGLI 230
>3qr3_A Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A {Hypocrea
jecorina}
Length = 340
Score = 30.7 bits (69), Expect = 3.2
Identities = 14/119 (11%), Positives = 33/119 (27%), Gaps = 28/119 (23%)
Query: 232 WNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYT-----HMSTLSDP 286
++ G + + + G + ++ + M L +
Sbjct: 13 FDFGCTTDGTCVTSKVYPPLKNFTGSNNYPDGIGQMQHFVNEDGMTIFRLPVGWQYLVNN 72
Query: 287 SLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHA 345
+L +D + + LV C G Y ++D +H++A
Sbjct: 73 NL---------------GGNLDS---TSI----SKYDQLVQGCLSLGAYCIVD-IHNYA 108
Score = 29.6 bits (66), Expect = 6.8
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 1033 EQLKYLVDECHKAGLYVLLDVVHSHA 1058
+ LV C G Y ++D +H++A
Sbjct: 84 SKYDQLVQGCLSLGAYCIVD-IHNYA 108
>3icj_A Uncharacterized metal-dependent hydrolase; structural genomics,
amidohydrolase, PSI-2, protein structur initiative; HET:
KCX; 1.95A {Pyrococcus furiosus} PDB: 3etk_A* 3igh_X*
Length = 534
Score = 31.1 bits (71), Expect = 3.3
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 41 YLVDECHKAGLFGTPEQLKYLVDECHKAGLLCFMHVVCAAGD 82
Y + L +++ +++ GL +H A GD
Sbjct: 314 YTDNPTTSGELVMNKDEIVEVIERAKPLGLDVAVH---AIGD 352
Score = 29.5 bits (67), Expect = 9.5
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 6/52 (11%)
Query: 305 YLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHS---HASKNVLDGL 353
Y + L +++ +++ GL V VH+ A LD
Sbjct: 314 YTDNPTTSGELVMNKDEIVEVIERAKPLGLDVA---VHAIGDKAVDVALDAF 362
Score = 29.5 bits (67), Expect = 9.5
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 6/52 (11%)
Query: 1018 YLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHS---HASKNVLDGL 1066
Y + L +++ +++ GL V VH+ A LD
Sbjct: 314 YTDNPTTSGELVMNKDEIVEVIERAKPLGLDVA---VHAIGDKAVDVALDAF 362
>2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure
initiative, PSI-2, NYSGXRC, structural genomics; 2.33A
{Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18
Length = 418
Score = 30.8 bits (70), Expect = 3.3
Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 318 TPEQLKYLVDECHKAGLYVLLDVVHSHASK 347
T E++ +V G++V VH+H ++
Sbjct: 214 TQEEVDAVVSAAKDYGMWV---AVHAHGAE 240
Score = 30.8 bits (70), Expect = 3.3
Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 1031 TPEQLKYLVDECHKAGLYVLLDVVHSHASK 1060
T E++ +V G++V VH+H ++
Sbjct: 214 TQEEVDAVVSAAKDYGMWV---AVHAHGAE 240
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A
{Bacillus}
Length = 345
Score = 30.7 bits (69), Expect = 3.4
Identities = 3/37 (8%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 320 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF 356
+ ++ +++ + + +++ VH ++ L+
Sbjct: 87 DTVREVIELAEQNKMVAVVE-VHDATGRDSRSDLDRA 122
Score = 30.7 bits (69), Expect = 3.4
Identities = 3/37 (8%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 1033 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF 1069
+ ++ +++ + + +++ VH ++ L+
Sbjct: 87 DTVREVIELAEQNKMVAVVE-VHDATGRDSRSDLDRA 122
>1vjz_A Endoglucanase; TM1752, structural genomics, JCSG, PSI, prote
structure initiative, joint center for structural
genomics; 2.05A {Thermotoga maritima} SCOP: c.1.8.3
Length = 341
Score = 30.7 bits (69), Expect = 3.5
Identities = 3/38 (7%), Positives = 16/38 (42%)
Query: 320 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFD 357
E++ ++ K G+++ + + + + + +
Sbjct: 77 EKIDRVIFWGEKYGIHICISLHRAPGYSVNKEVEEKTN 114
Score = 30.7 bits (69), Expect = 3.5
Identities = 3/38 (7%), Positives = 16/38 (42%)
Query: 1033 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFD 1070
E++ ++ K G+++ + + + + + +
Sbjct: 77 EKIDRVIFWGEKYGIHICISLHRAPGYSVNKEVEEKTN 114
>1wky_A Endo-beta-1,4-mannanase; TIM barrel, catalytic domain, CBM,
hydrolase; 1.65A {Bacillus SP} SCOP: b.18.1.31 c.1.8.3
Length = 464
Score = 30.5 bits (68), Expect = 4.3
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 320 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF 356
+ ++ L+ L +L+ VH + + LN
Sbjct: 72 QTVRNLISLAEDNNLVAVLE-VHDATGYDSIASLNRA 107
Score = 30.5 bits (68), Expect = 4.3
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 1033 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF 1069
+ ++ L+ L +L+ VH + + LN
Sbjct: 72 QTVRNLISLAEDNNLVAVLE-VHDATGYDSIASLNRA 107
>2jep_A Xyloglucanase; family 5, plant cell WALL, hydrolase; 1.4A
{Paenibacillus pabuli} PDB: 2jeq_A*
Length = 395
Score = 30.5 bits (68), Expect = 4.5
Identities = 6/25 (24%), Positives = 15/25 (60%)
Query: 320 EQLKYLVDECHKAGLYVLLDVVHSH 344
+++ +VD + GLYV++++
Sbjct: 110 NRIQQVVDYAYNEGLYVIINIHGDG 134
Score = 30.5 bits (68), Expect = 4.5
Identities = 6/25 (24%), Positives = 15/25 (60%)
Query: 1033 EQLKYLVDECHKAGLYVLLDVVHSH 1057
+++ +VD + GLYV++++
Sbjct: 110 NRIQQVVDYAYNEGLYVIINIHGDG 134
>3aof_A Endoglucanase; glycosyl hydrolase family 5, cellulase, biofuel,
hyperthermo hydrolase; HET: BMA; 1.29A {Thermotoga
maritima} PDB: 3amg_A* 3amc_A 3amd_A 3mmu_A 3mmw_A
3azs_A* 3azr_A* 3azt_A*
Length = 317
Score = 30.3 bits (68), Expect = 4.6
Identities = 6/29 (20%), Positives = 16/29 (55%)
Query: 320 EQLKYLVDECHKAGLYVLLDVVHSHASKN 348
+++ +++ K GL V++++ H N
Sbjct: 74 KRVDEVINGALKRGLAVVINIHHYEELMN 102
Score = 30.3 bits (68), Expect = 4.6
Identities = 6/29 (20%), Positives = 16/29 (55%)
Query: 1033 EQLKYLVDECHKAGLYVLLDVVHSHASKN 1061
+++ +++ K GL V++++ H N
Sbjct: 74 KRVDEVINGALKRGLAVVINIHHYEELMN 102
>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn
cluster, hydrolase; 1.02A {Escherichia coli} SCOP:
c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*
Length = 285
Score = 29.8 bits (67), Expect = 5.5
Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 15/105 (14%)
Query: 254 AESHDQALVGDKTIAFWL-----MDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVD 308
AES + AL + + + + L+ IID +K ++ +D
Sbjct: 127 AESINIALDKTQGVTAVIENTAGQGSNLGFKFEHLAA---IIDGVEDK----SRVGVCID 179
Query: 309 ECH--KAGLFG-TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVL 350
CH AG TP + + + + + L +H + +K+
Sbjct: 180 TCHAFAAGYDLRTPAECEKTFADFARTVGFKYLRGMHLNDAKSTF 224
Score = 29.8 bits (67), Expect = 6.5
Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 1004 GHLLDRFGTPEQLKYLVDECH--KAGLFG-TPEQLKYLVDECHKAGLYVLLDVVHSHASK 1060
++D ++ +D CH AG TP + + + + + L +H + +K
Sbjct: 162 AAIIDGVEDKSRVGVCIDTCHAFAAGYDLRTPAECEKTFADFARTVGFKYLRGMHLNDAK 221
Query: 1061 NVL 1063
+
Sbjct: 222 STF 224
>1g01_A Endoglucanase; alpha/beta barrel, TIM barrel, hydrolase; 1.90A
{Bacillus SP} SCOP: c.1.8.3 PDB: 1g0c_A*
Length = 364
Score = 30.0 bits (67), Expect = 5.8
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 320 EQLKYLVDECHKAGLYVLLDVVHSHA----SKNVLDGLNEFDGTQACFFHDGPRGTHPLW 375
+ + ++ + +YV++D H HA +V G +F A + D P+ + +W
Sbjct: 90 DLVYEGIELAFEHDMYVIVD-WHVHAPGDPRADVYSGAYDFFEEIADHYKDHPKNHYIIW 148
Query: 376 DSRLFN 381
+ L N
Sbjct: 149 E--LAN 152
Score = 30.0 bits (67), Expect = 5.8
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 1033 EQLKYLVDECHKAGLYVLLDVVHSHA----SKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1088
+ + ++ + +YV++D H HA +V G +F A + D P+ + +W
Sbjct: 90 DLVYEGIELAFEHDMYVIVD-WHVHAPGDPRADVYSGAYDFFEEIADHYKDHPKNHYIIW 148
Query: 1089 DSRLFN 1094
+ L N
Sbjct: 149 E--LAN 152
>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding,
hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima
MSB8} PDB: 2x7w_A*
Length = 287
Score = 29.8 bits (67), Expect = 6.0
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 1004 GHLLDRFGTPEQLKYLVDECHK--AGL-FGTPEQLKYLVDECHKAGLYVLLDVVHSHASK 1060
+ D +++ D CH +G E ++ L++E L ++H + SK
Sbjct: 161 KKIRDLVDQRDRVAITYDTCHGFDSGYDITKKEGVEALLNEIESLFGLERLKMIHLNDSK 220
Query: 1061 NVL 1063
L
Sbjct: 221 YPL 223
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase,
phosphate-binding motif; 2.04A {Escherichia coli} PDB:
3cqi_A 3cqh_A 3cqk_A
Length = 295
Score = 29.6 bits (67), Expect = 6.1
Identities = 12/86 (13%), Positives = 22/86 (25%), Gaps = 15/86 (17%)
Query: 301 EQLKYLVDECHKAG-----------LFGTPEQLKYLVDECHKAGLYVLLDVVHSHA-SKN 348
+ LK V+ +A L + + + + D+ + A +
Sbjct: 147 DGLKESVEMASRAQVTLAMEIMDYPLMNSISKALGYAHYLNNPWFQLYPDIGNLSAWDND 206
Query: 349 VLDGLNEFDGTQACFFH--DGPRGTH 372
V L H D G
Sbjct: 207 VQMELQAG-IGHIVAVHVKDTKPGVF 231
Score = 29.6 bits (67), Expect = 6.1
Identities = 12/86 (13%), Positives = 22/86 (25%), Gaps = 15/86 (17%)
Query: 1014 EQLKYLVDECHKAG-----------LFGTPEQLKYLVDECHKAGLYVLLDVVHSHA-SKN 1061
+ LK V+ +A L + + + + D+ + A +
Sbjct: 147 DGLKESVEMASRAQVTLAMEIMDYPLMNSISKALGYAHYLNNPWFQLYPDIGNLSAWDND 206
Query: 1062 VLDGLNEFDGTQACFFH--DGPRGTH 1085
V L H D G
Sbjct: 207 VQMELQAG-IGHIVAVHVKDTKPGVF 231
>4f7a_A Putative uncharacterized protein; TPR-like protein, mucin O-glycan
binding, structural genomic center for structural
genomics, JCSG; HET: PGE; 1.85A {Bacteroides vulgatus}
Length = 511
Score = 29.8 bits (66), Expect = 6.4
Identities = 25/231 (10%), Positives = 57/231 (24%), Gaps = 25/231 (10%)
Query: 343 SHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEY 402
S A K + + + + G +PL + + E + + S L Y D
Sbjct: 221 SEAQKALENSYGVIESSDENIQISGKGYQNPLA--GVAGWGETYMGATIASVLNGYEDPR 278
Query: 403 QFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIIT 462
+ + G +G Y Y + + + P ++
Sbjct: 279 ISIYYNPATLAEHTEEYLGVPQGV------YAKDGDPNYYQSYSFINTQTITASTPAVLL 332
Query: 463 IAEDVSGMPASCRPVTEGGTGFD----YRLEIRPDMSDMTVGTFDAAMNTTEERFKWLSA 518
A + + A Y ++ S G + + + +++
Sbjct: 333 TAAETWFLRAEASLRGINPKNESAKQCYEAGVQTSFSQWGAGDASLYLTSKGKPTDYINY 392
Query: 519 DPGYVSTKHEGDKVIIFERAGLL-------------FAFNFNGTQSFTDYR 556
G + A G +++ + R
Sbjct: 393 AAGPGKDMKALITTTPNFDDAVNQEEQLEKIITQKWIACWPEGMEAWAEQR 443
>3qho_A Endoglucanase, 458AA long hypothetical endo-1,4-beta-glucanase;
cellulase, catalytic domain, hydrolase; HET: CTT; 1.65A
{Pyrococcus horikoshii} PDB: 3axx_A* 2zum_A 2zun_A*
3qhm_A* 3qhn_A*
Length = 458
Score = 29.8 bits (66), Expect = 7.0
Identities = 6/29 (20%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 320 EQLKYLVDECHKAGLYVLLDVVHSHASKN 348
+ ++ ++ + G++VLLD H +
Sbjct: 134 QIMEKIIKKAGDLGIFVLLD-YHRIGCTH 161
Score = 29.8 bits (66), Expect = 7.0
Identities = 6/29 (20%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 1033 EQLKYLVDECHKAGLYVLLDVVHSHASKN 1061
+ ++ ++ + G++VLLD H +
Sbjct: 134 QIMEKIIKKAGDLGIFVLLD-YHRIGCTH 161
>3klk_A Glucansucrase; native form, open conformation, multidomain protein,
glycosyltransferase, transferase; 1.65A {Lactobacillus
reuteri} PDB: 3kll_A* 3hz3_A*
Length = 1039
Score = 30.1 bits (67), Expect = 7.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 316 FGTPEQLKYLVDECHKAGLYVLLDVVHSH 344
+G+ E L+ + HKAGL + D V
Sbjct: 742 YGSDEDLRNALQALHKAGLQAIADWVPDQ 770
Score = 30.1 bits (67), Expect = 7.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 1029 FGTPEQLKYLVDECHKAGLYVLLDVVHSH 1057
+G+ E L+ + HKAGL + D V
Sbjct: 742 YGSDEDLRNALQALHKAGLQAIADWVPDQ 770
>2c0h_A Mannan endo-1,4-beta-mannosidase; hydrolase, signal, TIM alpha/beta
barrel; 1.6A {Mytilus edulis} SCOP: c.1.8.3
Length = 353
Score = 29.7 bits (66), Expect = 7.5
Identities = 0/29 (0%), Positives = 10/29 (34%)
Query: 320 EQLKYLVDECHKAGLYVLLDVVHSHASKN 348
++ + + + + + + ++
Sbjct: 91 SDMRAYLHAAQRHNILIFFTLWNGAVKQS 119
Score = 29.7 bits (66), Expect = 7.5
Identities = 0/29 (0%), Positives = 10/29 (34%)
Query: 1033 EQLKYLVDECHKAGLYVLLDVVHSHASKN 1061
++ + + + + + + ++
Sbjct: 91 SDMRAYLHAAQRHNILIFFTLWNGAVKQS 119
>1egz_A Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CLAN GH-A, family
5-2, cellulase; 2.30A {Erwinia chrysanthemi} SCOP:
c.1.8.3
Length = 291
Score = 29.5 bits (66), Expect = 7.9
Identities = 8/37 (21%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 320 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF 356
+++ +VD +Y ++ HSH+++N F
Sbjct: 77 AKVERVVDAAIANDMYAIIG-WHSHSAENNRSEAIRF 112
Score = 29.5 bits (66), Expect = 7.9
Identities = 8/37 (21%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 1033 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF 1069
+++ +VD +Y ++ HSH+++N F
Sbjct: 77 AKVERVVDAAIANDMYAIIG-WHSHSAENNRSEAIRF 112
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, TIM barrel;
2.30A {Alicyclobacillus acidocaldarius subsp}
Length = 281
Score = 29.4 bits (66), Expect = 8.0
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 3/64 (4%)
Query: 320 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFH--DGPRGTHPLWDS 377
LK + + L+D H + + D L + + + H D D
Sbjct: 160 ADLKTFWEAIGAPNVGALVDSYHWYTAGEHEDDLAQLPPEKVVYVHINDTRDAPEDAHDG 219
Query: 378 -RLF 380
RL
Sbjct: 220 KRLL 223
Score = 29.4 bits (66), Expect = 8.0
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 3/64 (4%)
Query: 1033 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFH--DGPRGTHPLWDS 1090
LK + + L+D H + + D L + + + H D D
Sbjct: 160 ADLKTFWEAIGAPNVGALVDSYHWYTAGEHEDDLAQLPPEKVVYVHINDTRDAPEDAHDG 219
Query: 1091 -RLF 1093
RL
Sbjct: 220 KRLL 223
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN
BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A
Length = 294
Score = 29.4 bits (66), Expect = 8.7
Identities = 2/30 (6%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 319 PEQLKYLVDECHKAGLYVLLDVVHSHASKN 348
+ ++ +++ + + +++ VH ++
Sbjct: 63 IDTIREVIELAEQNKMVAVVE-VHDATGRD 91
Score = 29.4 bits (66), Expect = 8.7
Identities = 2/30 (6%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 1032 PEQLKYLVDECHKAGLYVLLDVVHSHASKN 1061
+ ++ +++ + + +++ VH ++
Sbjct: 63 IDTIREVIELAEQNKMVAVVE-VHDATGRD 91
>7a3h_A Endoglucanase; hydrolase, cellulose degradation, glycoside H family
5, michaelis complex, SKEW-BOAT, distortion; 0.95A
{Bacillus agaradhaerens} SCOP: c.1.8.3 PDB: 1h2j_A*
1hf6_A* 1ocq_A* 1w3k_A* 1h11_A* 4a3h_A* 5a3h_A* 6a3h_A*
1w3l_A 8a3h_A* 2v38_A* 1qhz_A 1qi0_A* 1e5j_A* 1qi2_A*
1h5v_A* 1a3h_A 2a3h_A* 3a3h_A* 1lf1_A
Length = 303
Score = 29.4 bits (66), Expect = 8.8
Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 16/84 (19%)
Query: 1001 NQHGH-LLDRFGTPEQLKYLVDECH-----------KAGLFGTPEQLKYL---VDECHKA 1045
+ HG +F E +K+L D+ G P + + V+
Sbjct: 33 SSHGLQWYGQFVNYESMKWLRDDWGINVFRAAMYTSSGGYIDDPSVKEKVKEAVEAAIDL 92
Query: 1046 GLYVLLDVVHSHASKNVLDGLNEF 1069
+YV++D H + + E
Sbjct: 93 DIYVIID-WHILSDNDPNIYKEEA 115
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.439
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 22,372,735
Number of extensions: 1422410
Number of successful extensions: 4136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4022
Number of HSP's successfully gapped: 390
Length of query: 1351
Length of database: 6,701,793
Length adjustment: 105
Effective length of query: 1246
Effective length of database: 3,770,088
Effective search space: 4697529648
Effective search space used: 4697529648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.3 bits)