BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9003
(1276 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AML|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From Oryza
Sativa L
Length = 755
Score = 248 bits (634), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 145/410 (35%), Positives = 211/410 (51%), Gaps = 70/410 (17%)
Query: 798 GDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWA 857
G+FNNWN + +K FG W + + + +G + H S+VK R+ G +DR+ W
Sbjct: 83 GEFNNWNGAKHKMEKDKFGIWSIKIS-HVNGKPAIPHNSKVKFRFRHGGGAWVDRIPAWI 141
Query: 858 TYVT-EPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYE 916
Y T + G Y+ W+P +++ + +P KPD +IYE+HVG+ +E + ++Y
Sbjct: 142 RYATFDASKFGAPYDGVHWDPPACERYVFKHPRPPKPDAPRIYEAHVGMSGEEPEVSTYR 201
Query: 917 DFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQ 976
+F V+PRI + ++N ++ + + Y
Sbjct: 202 EFADNVLPRI------------------RANNYNTVQLMAIMEHSYY------------- 230
Query: 977 ALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTP 1036
A G F+ + + T D ++D+A H GL
Sbjct: 231 ASFGYHVTNFFAVS----SRSGTPEDLKYLVDKA-----------------HSLGL---- 265
Query: 1037 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRL 1096
+ L+D H S+ + L+G + T +FH G RG H LWDSRL
Sbjct: 266 ---RVLMDVVHSHA---------SNNVTDGLNGYDVGQNTHESYFHTGDRGYHKLWDSRL 313
Query: 1097 FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVD 1156
FNY+ EVLRFLLSNLR+++DE+ FDGFRFDGVTSMLYH+HG +GF+G+Y EYF L+ D
Sbjct: 314 FNYANWEVLRFLLSNLRYWMDEFMFDGFRFDGVTSMLYHHHGINKGFTGNYKEYFSLDTD 373
Query: 1157 TDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLV 1206
DA++Y+M+AN +H PE +AEDVSGMP CRPV EGG GFD+RL
Sbjct: 374 VDAIVYMMLANHLMHKLLPEATIVAEDVSGMPVLCRPVDEGGVGFDFRLA 423
Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/84 (63%), Positives = 62/84 (73%)
Query: 928 KQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFW 987
+ MAIPD+WI+ LK +D W+M IV TLTNRRY EK +AYAESHDQ++VGDKTIAF
Sbjct: 421 RLAMAIPDRWIDYLKNKEDRKWSMSEIVQTLTNRRYTEKCIAYAESHDQSIVGDKTIAFL 480
Query: 988 LMDKEMYTHMSTLSDPSLIIDRAC 1011
LMDKEMYT MS L S I+R
Sbjct: 481 LMDKEMYTGMSDLQPASPTINRGI 504
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 36/55 (65%)
Query: 1217 FDAAMNTTEERFKWLSADPGYVSTKHEGDKVIIFERAGLLFAFNFNGTQSFTDYR 1271
FD AMN EE F +LS+ VS +E DKVI+FER L+F FNF+ +++ Y+
Sbjct: 570 FDQAMNALEEEFSFLSSSKQIVSDMNEKDKVIVFERGDLVFVFNFHPNKTYKGYK 624
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 95/253 (37%), Gaps = 41/253 (16%)
Query: 30 YQYEMKRRYGLMVNFLEQ---FEKHEGGIEKFTTSYNKYGIHVQADNSVRCFEWAPSAQQ 86
+ Y +KR +L+Q EKHEGG+E+F+ Y K+GI+ D + EWAP+AQ+
Sbjct: 27 FNYRIKR-------YLDQKCLIEKHEGGLEEFSKGYLKFGINT-VDGATIYREWAPAAQE 78
Query: 87 LYLTGNVSLTPWS-IMEEAXXXXXXXXXXXXXXXTGVFGTPEQLKYLVDECHKAGLF--G 143
L G W+ + G P K H G +
Sbjct: 79 AQLIG--EFNNWNGAKHKMEKDKFGIWSIKISHVNGKPAIPHNSKVKFRFRHGGGAWVDR 136
Query: 144 TPEQLKYLVDECHKAGLFGTP-EQLKYLVDECHKAGLFGTPEQLKYLVDECHKA--GLFG 200
P ++Y + K FG P + + + C + +F P K ++A G+ G
Sbjct: 137 IPAWIRYATFDASK---FGAPYDGVHWDPPACERY-VFKHPRPPKPDAPRIYEAHVGMSG 192
Query: 201 -TPEQLKY-----------LVDECHKAGLFGTPEQLKYLVDECHKAGLF------GTPEQ 242
PE Y + + L E Y H F GTPE
Sbjct: 193 EEPEVSTYREFADNVLPRIRANNYNTVQLMAIMEHSYYASFGYHVTNFFAVSSRSGTPED 252
Query: 243 LKYLVDECHKAGL 255
LKYLVD+ H GL
Sbjct: 253 LKYLVDKAHSLGL 265
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 19/32 (59%)
Query: 770 GTPEQLKYLVDECHKAGLLCFMHVVCAAGDFN 801
GTPE LKYLVD+ H GL M VV + N
Sbjct: 248 GTPEDLKYLVDKAHSLGLRVLMDVVHSHASNN 279
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 295 GTPEQLKYLVDECHKAGL 312
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 314 GTPEQLKYLVDECHKAGL 331
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 333 GTPEQLKYLVDECHKAGL 350
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 352 GTPEQLKYLVDECHKAGL 369
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 371 GTPEQLKYLVDECHKAGL 388
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 390 GTPEQLKYLVDECHKAGL 407
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 409 GTPEQLKYLVDECHKAGL 426
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 428 GTPEQLKYLVDECHKAGL 445
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 447 GTPEQLKYLVDECHKAGL 464
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 466 GTPEQLKYLVDECHKAGL 483
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 485 GTPEQLKYLVDECHKAGL 502
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 504 GTPEQLKYLVDECHKAGL 521
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 523 GTPEQLKYLVDECHKAGL 540
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 542 GTPEQLKYLVDECHKAGL 559
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 561 GTPEQLKYLVDECHKAGL 578
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 580 GTPEQLKYLVDECHKAGL 597
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 599 GTPEQLKYLVDECHKAGL 616
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 618 GTPEQLKYLVDECHKAGL 635
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 637 GTPEQLKYLVDECHKAGL 654
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 656 GTPEQLKYLVDECHKAGL 673
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 675 GTPEQLKYLVDECHKAGL 692
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 694 GTPEQLKYLVDECHKAGL 711
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 713 GTPEQLKYLVDECHKAGL 730
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 732 GTPEQLKYLVDECHKAGL 749
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 751 GTPEQLKYLVDECHKAGL 768
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
>pdb|3AMK|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From Oryza
Sativa L
Length = 702
Score = 248 bits (634), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 145/410 (35%), Positives = 211/410 (51%), Gaps = 70/410 (17%)
Query: 798 GDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWA 857
G+FNNWN + +K FG W + + + +G + H S+VK R+ G +DR+ W
Sbjct: 83 GEFNNWNGAKHKMEKDKFGIWSIKIS-HVNGKPAIPHNSKVKFRFRHGGGAWVDRIPAWI 141
Query: 858 TYVT-EPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYE 916
Y T + G Y+ W+P +++ + +P KPD +IYE+HVG+ +E + ++Y
Sbjct: 142 RYATFDASKFGAPYDGVHWDPPACERYVFKHPRPPKPDAPRIYEAHVGMSGEEPEVSTYR 201
Query: 917 DFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQ 976
+F V+PRI + ++N ++ + + Y
Sbjct: 202 EFADNVLPRI------------------RANNYNTVQLMAIMEHSYY------------- 230
Query: 977 ALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTP 1036
A G F+ + + T D ++D+A H GL
Sbjct: 231 ASFGYHVTNFFAVS----SRSGTPEDLKYLVDKA-----------------HSLGL---- 265
Query: 1037 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRL 1096
+ L+D H S+ + L+G + T +FH G RG H LWDSRL
Sbjct: 266 ---RVLMDVVHSHA---------SNNVTDGLNGYDVGQNTHESYFHTGDRGYHKLWDSRL 313
Query: 1097 FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVD 1156
FNY+ EVLRFLLSNLR+++DE+ FDGFRFDGVTSMLYH+HG +GF+G+Y EYF L+ D
Sbjct: 314 FNYANWEVLRFLLSNLRYWMDEFMFDGFRFDGVTSMLYHHHGINKGFTGNYKEYFSLDTD 373
Query: 1157 TDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLV 1206
DA++Y+M+AN +H PE +AEDVSGMP CRPV EGG GFD+RL
Sbjct: 374 VDAIVYMMLANHLMHKLLPEATIVAEDVSGMPVLCRPVDEGGVGFDFRLA 423
Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/84 (63%), Positives = 62/84 (73%)
Query: 928 KQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFW 987
+ MAIPD+WI+ LK +D W+M IV TLTNRRY EK +AYAESHDQ++VGDKTIAF
Sbjct: 421 RLAMAIPDRWIDYLKNKEDRKWSMSEIVQTLTNRRYTEKCIAYAESHDQSIVGDKTIAFL 480
Query: 988 LMDKEMYTHMSTLSDPSLIIDRAC 1011
LMDKEMYT MS L S I+R
Sbjct: 481 LMDKEMYTGMSDLQPASPTINRGI 504
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 36/55 (65%)
Query: 1217 FDAAMNTTEERFKWLSADPGYVSTKHEGDKVIIFERAGLLFAFNFNGTQSFTDYR 1271
FD AMN EE F +LS+ VS +E DKVI+FER L+F FNF+ +++ Y+
Sbjct: 570 FDQAMNALEEEFSFLSSSKQIVSDMNEKDKVIVFERGDLVFVFNFHPNKTYKGYK 624
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 95/253 (37%), Gaps = 41/253 (16%)
Query: 30 YQYEMKRRYGLMVNFLEQ---FEKHEGGIEKFTTSYNKYGIHVQADNSVRCFEWAPSAQQ 86
+ Y +KR +L+Q EKHEGG+E+F+ Y K+GI+ D + EWAP+AQ+
Sbjct: 27 FNYRIKR-------YLDQKCLIEKHEGGLEEFSKGYLKFGINT-VDGATIYREWAPAAQE 78
Query: 87 LYLTGNVSLTPWS-IMEEAXXXXXXXXXXXXXXXTGVFGTPEQLKYLVDECHKAGLF--G 143
L G W+ + G P K H G +
Sbjct: 79 AQLIG--EFNNWNGAKHKMEKDKFGIWSIKISHVNGKPAIPHNSKVKFRFRHGGGAWVDR 136
Query: 144 TPEQLKYLVDECHKAGLFGTP-EQLKYLVDECHKAGLFGTPEQLKYLVDECHKA--GLFG 200
P ++Y + K FG P + + + C + +F P K ++A G+ G
Sbjct: 137 IPAWIRYATFDASK---FGAPYDGVHWDPPACERY-VFKHPRPPKPDAPRIYEAHVGMSG 192
Query: 201 -TPEQLKY-----------LVDECHKAGLFGTPEQLKYLVDECHKAGLF------GTPEQ 242
PE Y + + L E Y H F GTPE
Sbjct: 193 EEPEVSTYREFADNVLPRIRANNYNTVQLMAIMEHSYYASFGYHVTNFFAVSSRSGTPED 252
Query: 243 LKYLVDECHKAGL 255
LKYLVD+ H GL
Sbjct: 253 LKYLVDKAHSLGL 265
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 19/32 (59%)
Query: 770 GTPEQLKYLVDECHKAGLLCFMHVVCAAGDFN 801
GTPE LKYLVD+ H GL M VV + N
Sbjct: 248 GTPEDLKYLVDKAHSLGLRVLMDVVHSHASNN 279
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 295 GTPEQLKYLVDECHKAGL 312
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 314 GTPEQLKYLVDECHKAGL 331
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 333 GTPEQLKYLVDECHKAGL 350
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 352 GTPEQLKYLVDECHKAGL 369
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 371 GTPEQLKYLVDECHKAGL 388
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 390 GTPEQLKYLVDECHKAGL 407
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 409 GTPEQLKYLVDECHKAGL 426
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 428 GTPEQLKYLVDECHKAGL 445
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 447 GTPEQLKYLVDECHKAGL 464
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 466 GTPEQLKYLVDECHKAGL 483
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 485 GTPEQLKYLVDECHKAGL 502
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 504 GTPEQLKYLVDECHKAGL 521
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 523 GTPEQLKYLVDECHKAGL 540
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 542 GTPEQLKYLVDECHKAGL 559
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 561 GTPEQLKYLVDECHKAGL 578
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 580 GTPEQLKYLVDECHKAGL 597
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 599 GTPEQLKYLVDECHKAGL 616
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 618 GTPEQLKYLVDECHKAGL 635
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 637 GTPEQLKYLVDECHKAGL 654
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 656 GTPEQLKYLVDECHKAGL 673
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 675 GTPEQLKYLVDECHKAGL 692
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 694 GTPEQLKYLVDECHKAGL 711
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 713 GTPEQLKYLVDECHKAGL 730
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 732 GTPEQLKYLVDECHKAGL 749
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 751 GTPEQLKYLVDECHKAGL 768
GTPE LKYLVD+ H GL
Sbjct: 248 GTPEDLKYLVDKAHSLGL 265
>pdb|3K1D|A Chain A, Crystal Structure Of Glycogen Branching Enzyme Synonym: 1,4-
Glucan:1,4-Alpha-D-Glucan 6-Glucosyl-Transferase From
Mycob Tuberculosis H37rv
Length = 722
Score = 103 bits (257), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 98/210 (46%), Gaps = 17/210 (8%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092
FGTP+ + LVD H+AG+ V++D V +H K+ L FDGT D RG W
Sbjct: 309 FGTPDDFRALVDALHQAGIGVIVDWVPAHFPKDAW-ALGRFDGTPLYEHSDPKRGEQLDW 367
Query: 1093 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 1152
+ +F++ EV FL++N ++L E+ DG R D V SMLY ++ EG G G
Sbjct: 368 GTYVFDFGRPEVRNFLVANALYWLQEFHIDGLRVDAVASMLYLDYSRPEG--GWTPNVHG 425
Query: 1153 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLVSLEGSA 1212
+ +A+ +L N H P I+TIAE+ + RP GG GF +
Sbjct: 426 GRENLEAVQFLQEMNATAHKVAPGIVTIAEESTPWSGVTRPTNIGGLGFSMKW------- 478
Query: 1213 LSALFDAAMNTTEERFKWLSADPGYVSTKH 1242
M + ++S DP Y S H
Sbjct: 479 -------NMGWMHDTLDYVSRDPVYRSYHH 501
>pdb|1M7X|A Chain A, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|B Chain B, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|C Chain C, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|D Chain D, The X-Ray Crystallographic Structure Of Branching Enzyme
Length = 617
Score = 100 bits (250), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 90/173 (52%), Gaps = 5/173 (2%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPR-GTHPL 1091
FGT + +Y +D H AGL V+LD V H + L EFDGT + H PR G H
Sbjct: 201 FGTRDDFRYFIDAAHAAGLNVILDWVPGHFPTDDF-ALAEFDGTN-LYEHSDPREGYHQD 258
Query: 1092 WDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYF 1151
W++ ++NY EV FL+ N ++++ + D R D V SM+Y ++ EG F
Sbjct: 259 WNTLIYNYGRREVSNFLVGNALYWIERFGIDALRVDAVASMIYRDYSRKEG--EWIPNEF 316
Query: 1152 GLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYR 1204
G + +A+ +L N+ L ++ +T+AE+ + P RP GG GF Y+
Sbjct: 317 GGRENLEAIEFLRNTNRILGEQVSGAVTMAEESTDFPGVSRPQDMGGLGFWYK 369
>pdb|1EHA|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase From
Sulfolobus Solfataricus
Length = 558
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 36/116 (31%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTH--- 1089
+G PE + LVDE HK GL V+LDVV++H GP G +
Sbjct: 164 YGGPEGFRKLVDEAHKKGLGVILDVVYNHV---------------------GPEGNYMVK 202
Query: 1090 --PLWDSR-------LFNYSEI---EVLRFLLSNLRWYLDEYQFDGFRFDGVTSML 1133
P + + FN+ + EV +F+L N+ +++ EY DGFR D V +++
Sbjct: 203 LGPYFSQKYKTPWGLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLDAVHAII 258
>pdb|3VGG|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(E283q) Complexed With Maltoheptaose
pdb|3VGH|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(E283q) Complexed With Maltotriosyltrehalose
Length = 558
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 36/116 (31%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTH--- 1089
+G PE + LVDE HK GL V+LDVV++H GP G +
Sbjct: 164 YGGPEGFRKLVDEAHKKGLGVILDVVYNHV---------------------GPEGNYMVK 202
Query: 1090 --PLWDSR-------LFNYSEI---EVLRFLLSNLRWYLDEYQFDGFRFDGVTSML 1133
P + + FN+ + EV +F+L N+ +++ EY DGFR D V +++
Sbjct: 203 LGPYFSQKYKTPWGLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLDAVHAII 258
>pdb|1EH9|A Chain A, Crystal Structure Of Sulfolobus Solfataricus
Glycosyltrehalose Trehalohydrolase
pdb|3VGB|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(Gthase) From Sulfolobus Solfataricus Km1
Length = 558
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 36/116 (31%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTH--- 1089
+G PE + LVDE HK GL V+LDVV++H GP G +
Sbjct: 164 YGGPEGFRKLVDEAHKKGLGVILDVVYNHV---------------------GPEGNYMVK 202
Query: 1090 --PLWDSR-------LFNYSEI---EVLRFLLSNLRWYLDEYQFDGFRFDGVTSML 1133
P + + FN+ + EV +F+L N+ +++ EY DGFR D V +++
Sbjct: 203 LGPYFSQKYKTPWGLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLDAVHAII 258
>pdb|3VGD|A Chain A, Ctystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252e)
Length = 558
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 36/116 (31%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTH--- 1089
+G PE + LVDE HK GL V+LDVV++H GP G +
Sbjct: 164 YGGPEGFRKLVDEAHKKGLGVILDVVYNHV---------------------GPEGNYMVK 202
Query: 1090 --PLWDSR-------LFNYSEI---EVLRFLLSNLRWYLDEYQFDGFRFDGVTSML 1133
P + + FN+ + EV +F+L N+ +++ EY DGFR + V +++
Sbjct: 203 LGPYFSQKYKTPWGLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLEAVHAII 258
>pdb|3VGE|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252s)
pdb|3VGF|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252s) Complexed With Maltotriosyltrehalose
Length = 558
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 36/116 (31%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTH--- 1089
+G PE + LVDE HK GL V+LDVV++H GP G +
Sbjct: 164 YGGPEGFRKLVDEAHKKGLGVILDVVYNHV---------------------GPEGNYMVK 202
Query: 1090 --PLWDSR-------LFNYSEI---EVLRFLLSNLRWYLDEYQFDGFRFDGVTSML 1133
P + + FN+ + EV +F+L N+ +++ EY DGFR V +++
Sbjct: 203 LGPYFSQKYKTPWGLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLSAVHAII 258
>pdb|2BHU|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase
Length = 602
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 8/100 (8%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092
+G PE L LVD H+ GL V LDVV++H + N +F D W
Sbjct: 189 YGRPEDLMALVDAAHRLGLGVFLDVVYNHFGPSG----NYLSSYAPSYFTD---RFSSAW 241
Query: 1093 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM 1132
L +Y+E + R++ N R +L +Y FDG R D M
Sbjct: 242 GMGL-DYAEPHMRRYVTGNARMWLRDYHFDGLRLDATPYM 280
>pdb|2BHY|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase In Complex With
Trehalose
pdb|2BHZ|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase In Complex With
Maltose
pdb|2BXY|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BXZ|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY0|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY1|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY2|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY3|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
Length = 602
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092
+G PE L LVD H+ GL V LDVV++H + N +F D W
Sbjct: 189 YGRPEDLXALVDAAHRLGLGVFLDVVYNHFGPSG----NYLSSYAPSYFTD---RFSSAW 241
Query: 1093 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGV 1129
L +Y+E R++ N R +L +Y FDG R D
Sbjct: 242 GXGL-DYAEPHXRRYVTGNARXWLRDYHFDGLRLDAT 277
>pdb|2VNC|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VNC|B Chain B, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VR5|A Chain A, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VR5|B Chain B, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VUY|A Chain A, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
pdb|2VUY|B Chain B, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
Length = 718
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 9/135 (6%)
Query: 1002 DPSLIIDRACEKFGTPEQLKYLVDECHKAG---LFGTPEQLKYLVDECHKAGLYVLLDVV 1058
D + D+ + + + + EC + L G K +V+E H AG+ V++DVV
Sbjct: 229 DQRFLTDKGLTNYWGYDPINFFSPECRYSSTGCLGGQVLSFKKMVNELHNAGIEVIIDVV 288
Query: 1059 HSH-ASKNVLDGLNEFDGT-QACFFHDGPRGTHPLWD----SRLFNYSEIEVLRFLLSNL 1112
++H A N L F G ++ P D N S V++ +L +L
Sbjct: 289 YNHTAEGNHLGPTLSFRGIDNTAYYMLQPDNKRYYLDFTGTGNTLNLSHPRVIQMVLDSL 348
Query: 1113 RWYLDEYQFDGFRFD 1127
R+++ E DGFRFD
Sbjct: 349 RYWVTEMHVDGFRFD 363
>pdb|4GKL|A Chain A, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
pdb|4GKL|B Chain B, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
Length = 422
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 10/101 (9%)
Query: 1032 LFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS-KNVLDGLNEFDGTQACFFHD---GPRG 1087
L GT K V H+ +YVL+D+V +HA+ NVL F D P
Sbjct: 74 LIGTKGDFKKFVKRAHELNMYVLMDMVLNHAAVDNVL-----VKKHPEWFLRDENGNPTR 128
Query: 1088 THPLW-DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 1127
P W D F+YS E+ ++++ +R++++E+ DGFR D
Sbjct: 129 KVPDWSDVVDFDYSNGELREYMINMMRYWVEEFDVDGFRCD 169
>pdb|2YA0|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 714
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 19/98 (19%)
Query: 1038 QLKYLVDECHKAGLYVLLDVVHSHASK-NVLDGLN-------EFDGTQACFFHDGPRGTH 1089
+ K L++E HK G+ +LDVV++H +K ++ + L + DGT F G GT
Sbjct: 256 EFKNLINEIHKRGMGAILDVVYNHTAKVDLFEDLEPNYYHFMDADGTPRTSFGGGRLGT- 314
Query: 1090 PLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 1127
+ R L+ ++++ +D Y+ DGFRFD
Sbjct: 315 ----------THHMTKRLLIDSIKYLVDTYKVDGFRFD 342
>pdb|2YA2|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua In Complex With An
Inhibitor
Length = 708
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 19/98 (19%)
Query: 1038 QLKYLVDECHKAGLYVLLDVVHSHASK-NVLDGLN-------EFDGTQACFFHDGPRGTH 1089
+ K L++E HK G+ +LDVV++H +K ++ + L + DGT F G GT
Sbjct: 257 EFKNLINEIHKRGMGAILDVVYNHTAKVDLFEDLEPNYYHFMDADGTPRTSFGGGRLGT- 315
Query: 1090 PLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 1127
+ R L+ ++++ +D Y+ DGFRFD
Sbjct: 316 ----------THHMTKRLLIDSIKYLVDTYKVDGFRFD 343
>pdb|2YA1|A Chain A, Product Complex Of A Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 1014
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 19/98 (19%)
Query: 1038 QLKYLVDECHKAGLYVLLDVVHSHASK-NVLDGLN-------EFDGTQACFFHDGPRGTH 1089
+ K L++E HK G+ +LDVV++H +K ++ + L + DGT F G GT
Sbjct: 563 EFKNLINEIHKRGMGAILDVVYNHTAKVDLFEDLEPNYYHFMDADGTPRTSFGGGRLGT- 621
Query: 1090 PLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 1127
+ R L+ ++++ +D Y+ DGFRFD
Sbjct: 622 ----------THHMTKRLLIDSIKYLVDTYKVDGFRFD 649
>pdb|1J0H|A Chain A, Crystal Structure Of Bacillus Stearothermophilus
Neopullulanase
pdb|1J0H|B Chain B, Crystal Structure Of Bacillus Stearothermophilus
Neopullulanase
pdb|1J0I|A Chain A, Crystal Structure Of Neopullulanase Complex With Panose
pdb|1J0I|B Chain B, Crystal Structure Of Neopullulanase Complex With Panose
Length = 588
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 16/148 (10%)
Query: 996 HMSTLSDPSLIIDRACEKFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVL 1054
H+ L D + F +P KY D FG E LK L+D CH+ G+ V+
Sbjct: 181 HLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVM 240
Query: 1055 LDVVHSHASKNVLDGLNEFDGTQACFF------HDGPRGTHPL--WDSRLF-------NY 1099
LD V +H + + ++ + H+ P T P +D+ F N
Sbjct: 241 LDAVFNHCGYEFAPFQDVWKNGESSKYKDWFHIHEFPLQTEPRPNYDTFAFVPQMPKLNT 300
Query: 1100 SEIEVLRFLLSNLRWYLDEYQFDGFRFD 1127
+ EV R+LL +++ E+ DG+R D
Sbjct: 301 ANPEVKRYLLDVATYWIREFDIDGWRLD 328
Score = 33.1 bits (74), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 730 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 784
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 785 AGLLCFMHVV 794
G+ + V
Sbjct: 235 KGIRVMLDAV 244
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 141 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 195
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 196 AGL 198
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 160 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 214
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 215 AGL 217
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 179 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 233
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 234 AGL 236
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 198 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 252
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 253 AGL 255
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 217 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 271
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 272 AGL 274
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 236 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 290
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 291 AGL 293
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 255 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 309
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 310 AGL 312
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 274 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 328
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 329 AGL 331
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 293 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 347
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 348 AGL 350
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 312 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 366
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 367 AGL 369
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 331 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 385
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 386 AGL 388
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 350 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 404
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 405 AGL 407
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 369 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 423
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 424 AGL 426
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 388 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 442
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 443 AGL 445
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 407 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 461
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 462 AGL 464
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 426 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 480
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 481 AGL 483
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 445 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 499
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 500 AGL 502
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 464 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 518
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 519 AGL 521
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 483 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 537
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 538 AGL 540
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 502 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 556
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 557 AGL 559
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 521 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 575
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 576 AGL 578
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 540 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 594
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 595 AGL 597
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 559 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 613
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 614 AGL 616
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 578 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 632
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 633 AGL 635
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 597 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 651
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 652 AGL 654
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 616 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 670
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 671 AGL 673
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 635 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 689
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 690 AGL 692
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 654 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 708
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 709 AGL 711
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 673 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 727
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 728 AGL 730
G+
Sbjct: 235 KGI 237
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 124 GTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAG 178
G + L YLVD + +F +P KY D FG E LK L+D CH+ G
Sbjct: 177 GIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHEKG 236
Query: 179 L 179
+
Sbjct: 237 I 237
>pdb|1J0J|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
Maltotetraose
pdb|1J0J|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
Maltotetraose
pdb|1J0K|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
Isopanose
pdb|1J0K|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
Isopanose
Length = 588
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 16/148 (10%)
Query: 996 HMSTLSDPSLIIDRACEKFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVL 1054
H+ L D + F +P KY D FG E LK L+D CH+ G+ V+
Sbjct: 181 HLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVM 240
Query: 1055 LDVVHSHASKNVLDGLNEFDGTQACFF------HDGPRGTHPL--WDSRLF-------NY 1099
LD V +H + + ++ + H+ P T P +D+ F N
Sbjct: 241 LDAVFNHCGYEFAPFQDVWKNGESSKYKDWFHIHEFPLQTEPRPNYDTFAFVPQMPKLNT 300
Query: 1100 SEIEVLRFLLSNLRWYLDEYQFDGFRFD 1127
+ EV R+LL +++ E+ DG+R D
Sbjct: 301 ANPEVKRYLLDVATYWIREFDIDGWRLD 328
Score = 33.1 bits (74), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 730 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 784
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 785 AGLLCFMHVV 794
G+ + V
Sbjct: 235 KGIRVMLDAV 244
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 141 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 195
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 196 AGL 198
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 160 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 214
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 215 AGL 217
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 179 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 233
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 234 AGL 236
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 198 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 252
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 253 AGL 255
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 217 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 271
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 272 AGL 274
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 236 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 290
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 291 AGL 293
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 255 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 309
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 310 AGL 312
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 274 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 328
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 329 AGL 331
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 293 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 347
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 348 AGL 350
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 312 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 366
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 367 AGL 369
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 331 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 385
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 386 AGL 388
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 350 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 404
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 405 AGL 407
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 369 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 423
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 424 AGL 426
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 388 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 442
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 443 AGL 445
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 407 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 461
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 462 AGL 464
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 426 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 480
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 481 AGL 483
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 445 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 499
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 500 AGL 502
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 464 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 518
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 519 AGL 521
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 483 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 537
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 538 AGL 540
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 502 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 556
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 557 AGL 559
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 521 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 575
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 576 AGL 578
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 540 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 594
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 595 AGL 597
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 559 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 613
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 614 AGL 616
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 578 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 632
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 633 AGL 635
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 597 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 651
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 652 AGL 654
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 616 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 670
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 671 AGL 673
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 635 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 689
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 690 AGL 692
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 654 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 708
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 709 AGL 711
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 673 LFGTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHK 727
L G + L YLVD + +F +P KY D FG E LK L+D CH+
Sbjct: 175 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHE 234
Query: 728 AGL 730
G+
Sbjct: 235 KGI 237
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 124 GTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAG 178
G + L YLVD + +F +P KY D FG E LK L+D CH+ G
Sbjct: 177 GIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHEKG 236
Query: 179 L 179
+
Sbjct: 237 I 237
>pdb|3FAW|A Chain A, Crystal Structure Of The Group B Streptococcus Pullulanase
Sap
pdb|3FAX|A Chain A, The Crystal Structure Of Gbs Pullulanase Sap In Complex With
Maltotetraose
Length = 877
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 13/95 (13%)
Query: 1038 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFH----DG-PRGTHPLW 1092
+LK L+ + HK G+ V+LDVV++H +K L F+ + ++H DG PR
Sbjct: 371 ELKQLIHDIHKRGMGVILDVVYNHTAKTYL-----FEDIEPNYYHFMNEDGSPR--ESFG 423
Query: 1093 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 1127
RL + R L+ ++++ E++ DGFRFD
Sbjct: 424 GGRLGTTHAMS-RRVLVDSIKYLTSEFKVDGFRFD 457
>pdb|3M07|A Chain A, 1.4 Angstrom Resolution Crystal Structure Of Putative Alpha
Amylase From Salmonella Typhimurium
Length = 618
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSH--ASKNVLDGLNEFDGTQACFFHDGPRGTHP 1090
+GTP+ K +D H GL V+LD+V +H N L L FFH +
Sbjct: 199 YGTPDDFKAFIDAAHGYGLSVVLDIVLNHFGPEGNYLPLL------APAFFH---KERMT 249
Query: 1091 LWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM 1132
W + + Y V R+++ ++L EY DG RFD + +
Sbjct: 250 PWGNGI-AYDVDAVRRYIIEAPLYWLTEYHLDGLRFDAIDQI 290
>pdb|1SMA|A Chain A, Crystal Structure Of A Maltogenic Amylase
pdb|1SMA|B Chain B, Crystal Structure Of A Maltogenic Amylase
Length = 588
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 59/148 (39%), Gaps = 16/148 (10%)
Query: 996 HMSTLSDPSLIIDRACEKFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVL 1054
H+ L+D + F P KY D FG E LK LV CH+ G+ V+
Sbjct: 181 HLDYLADLGITGIYLTPIFRAPSNHKYDTADYFEIDPHFGDKETLKTLVKRCHEKGIRVM 240
Query: 1055 LDVVHSHASKNVLDGLNEFDGTQACFFHDG------PRGTHPL--WDSRLF-------NY 1099
LD V +H + A + D P T P +D+ F N
Sbjct: 241 LDAVFNHCGYEFAPFQDVLKNGAASRYKDWFHIREFPLQTEPRPNYDTFAFVPHMPKLNT 300
Query: 1100 SEIEVLRFLLSNLRWYLDEYQFDGFRFD 1127
+ EV R+LL +++ E+ DG+R D
Sbjct: 301 AHPEVKRYLLDVATYWIREFDIDGWRLD 328
>pdb|1GVI|A Chain A, Thermus Maltogenic Amylase In Complex With Beta-Cd
pdb|1GVI|B Chain B, Thermus Maltogenic Amylase In Complex With Beta-Cd
Length = 588
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 59/148 (39%), Gaps = 16/148 (10%)
Query: 996 HMSTLSDPSLIIDRACEKFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVL 1054
H+ L+D + F P KY D FG E LK LV CH+ G+ V+
Sbjct: 181 HLDYLADLGITGIYLTPIFRAPSNHKYDTADYFEIDPHFGDKETLKTLVKRCHEKGIRVM 240
Query: 1055 LDVVHSHASKNVLDGLNEFDGTQACFFHDG------PRGTHPL--WDSRLF-------NY 1099
LD V +H + A + D P T P +D+ F N
Sbjct: 241 LDAVFNHCGYEFAPFQDVLKNGAASRYKDWFHIREFPLQTEPRPNYDTFAFVPHMPKLNT 300
Query: 1100 SEIEVLRFLLSNLRWYLDEYQFDGFRFD 1127
+ EV R+LL +++ E+ DG+R D
Sbjct: 301 AHPEVKRYLLDVATYWIREFDIDGWRLD 328
>pdb|2WSK|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Glgx From
Escherichia Coli K-12
Length = 657
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 1037 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG----LNEFDGTQACFFHDGPRGTHPLW 1092
++ + + HKAG+ V+LD+V +H+++ LDG L D + + G + W
Sbjct: 242 DEFRDAIKALHKAGIEVILDIVLNHSAELDLDGPLFSLRGIDNRSYYWIRED--GDYHNW 299
Query: 1093 D--SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM 1132
N S V+ + + LR++++ DGFRFD M
Sbjct: 300 TGCGNTLNLSHPAVVDYASACLRYWVETCHVDGFRFDLAAVM 341
>pdb|2E8Y|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168
pdb|2E8Y|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168
pdb|2E8Z|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Alpha-Cyclodextrin
pdb|2E8Z|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Alpha-Cyclodextrin
pdb|2E9B|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Maltose
pdb|2E9B|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Maltose
Length = 718
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 1038 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLF 1097
+LK +++ H+ GL V+LDVV +H K + F+ T +F P + +
Sbjct: 317 ELKQMINTLHQHGLRVILDVVFNHVYKR---ENSPFEKTVPGYFFRHDECGKPSNGTGVG 373
Query: 1098 N--YSEIEVLR-FLLSNLRWYLDEYQFDGFRFD 1127
N SE + R F+ + ++L+EY DGFRFD
Sbjct: 374 NDIASERRMARKFIADCVVYWLEEYNVDGFRFD 406
>pdb|1EA9|C Chain C, Cyclomaltodextrinase
pdb|1EA9|D Chain D, Cyclomaltodextrinase
Length = 583
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 24/115 (20%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLDGLNEFDGTQ-ACFFH------ 1082
FG + LK LVD CH+ G+ VLLD V +H+ + +D L + ++ +FH
Sbjct: 215 FGDKDTLKKLVDLCHERGIRVLLDAVFNHSGRTFPPFVDVLKNGEKSKYKDWFHIRSLPL 274
Query: 1083 ---DGPRGTHPLWDSRLF-------NYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 1127
DG P +D+ F N +V +LL +++ E DG+R D
Sbjct: 275 EVVDGI----PTYDTFAFEPLMPKLNTEHPDVKEYLLKAAEYWIRETGIDGWRLD 325
>pdb|2ZE0|A Chain A, Alpha-glucosidase Gsj
Length = 555
Score = 37.7 bits (86), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 32/129 (24%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLDGLNEFDGTQACFF--HDGPRG 1087
FGT + L+ + H+ GL V+LD+V +H S ++ + D + ++ DG G
Sbjct: 75 FGTMDDFDELLAQAHRRGLKVILDLVINHTSDEHPWFIESRSSRDNPKRDWYIWRDGKDG 134
Query: 1088 THP-LWDSRL-------------------------FNYSEIEVLRFLLSNLRWYLDEYQF 1121
P W+S N+ EV + L + W+LD+
Sbjct: 135 REPNNWESIFGGSAWQYDERTGQYYLHIFDVKQPDLNWENSEVRQALYEMVNWWLDK-GI 193
Query: 1122 DGFRFDGVT 1130
DGFR D ++
Sbjct: 194 DGFRIDAIS 202
>pdb|2WAN|A Chain A, Pullulanase From Bacillus Acidopullulyticus
Length = 921
Score = 36.6 bits (83), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 6/93 (6%)
Query: 1038 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLF 1097
+LK L+ H+ + V +DVV++H + +V+ +++FD +++ + S
Sbjct: 533 ELKQLIQSLHQQRIGVNMDVVYNH-TFDVM--VSDFDKIVPQYYYRTDSNGNYTNGSGXG 589
Query: 1098 NYSEIE---VLRFLLSNLRWYLDEYQFDGFRFD 1127
N E +F+L ++ ++++EY DGFRFD
Sbjct: 590 NEFATEHPMAQKFVLDSVNYWVNEYHVDGFRFD 622
>pdb|2AAA|A Chain A, Calcium Binding In Alpha-Amylases: An X-Ray Diffraction
Study At 2.1 Angstroms Resolution Of Two Enzymes From
Aspergillus
Length = 484
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSH 1061
FGT + LK L D H G+Y+++DVV H
Sbjct: 94 FGTADNLKSLSDALHARGMYLMVDVVPDH 122
>pdb|1WZL|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt R469l
pdb|1WZL|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt R469l
Length = 585
Score = 34.3 bits (77), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 1014 FGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHA 1062
F +P KY D FG + LVDE H+ G+ ++LD V +HA
Sbjct: 196 FASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHA 245
>pdb|1G1Y|A Chain A, Crystal Structure Of Alpha-Amylase Ii (Tvaii) From
Thermoactinomyces Vulgaris R-47 And Beta-Cyclodextrin
Complex
pdb|1G1Y|B Chain B, Crystal Structure Of Alpha-Amylase Ii (Tvaii) From
Thermoactinomyces Vulgaris R-47 And Beta-Cyclodextrin
Complex
Length = 585
Score = 34.3 bits (77), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 1014 FGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHA 1062
F +P KY D FG + LVDE H+ G+ ++LD V +HA
Sbjct: 196 FASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHA 245
>pdb|1WZK|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt D465n
pdb|1WZK|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt D465n
Length = 585
Score = 34.3 bits (77), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 1014 FGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHA 1062
F +P KY D FG + LVDE H+ G+ ++LD V +HA
Sbjct: 196 FASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHA 245
>pdb|1WZM|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii)
Mutatnt R469k
pdb|1WZM|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii)
Mutatnt R469k
Length = 585
Score = 34.3 bits (77), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 1014 FGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHA 1062
F +P KY D FG + LVDE H+ G+ ++LD V +HA
Sbjct: 196 FASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHA 245
>pdb|1JL8|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From Thermoactinomyces
Vulgaris R-47 With Beta-Cyclodextrin Based On A Co-
Crystallization With Methyl Beta-Cyclodextrin
pdb|1JL8|B Chain B, Complex Of Alpha-Amylase Ii (Tva Ii) From Thermoactinomyces
Vulgaris R-47 With Beta-Cyclodextrin Based On A Co-
Crystallization With Methyl Beta-Cyclodextrin
pdb|1JIB|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From Thermoactinomyces
Vulgaris R-47 With Maltotetraose Based On A Crystal
Soaked With Maltohexaose.
pdb|1JIB|B Chain B, Complex Of Alpha-Amylase Ii (Tva Ii) From Thermoactinomyces
Vulgaris R-47 With Maltotetraose Based On A Crystal
Soaked With Maltohexaose.
pdb|1VB9|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47 Alpha-
Amylase Ii (Tva Ii) Complexed With Transglycosylated
Product
pdb|1VB9|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47 Alpha-
Amylase Ii (Tva Ii) Complexed With Transglycosylated
Product
pdb|2D2O|A Chain A, Structure Of A Complex Of Thermoactinomyces Vulgaris R-47
Alpha-Amylase 2 With Maltohexaose Demonstrates The
Important Role Of Aromatic Residues At The Reducing End
Of The Substrate Binding Cleft
pdb|2D2O|B Chain B, Structure Of A Complex Of Thermoactinomyces Vulgaris R-47
Alpha-Amylase 2 With Maltohexaose Demonstrates The
Important Role Of Aromatic Residues At The Reducing End
Of The Substrate Binding Cleft
Length = 585
Score = 34.3 bits (77), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 1014 FGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHA 1062
F +P KY D FG + LVDE H+ G+ ++LD V +HA
Sbjct: 196 FASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHA 245
>pdb|1VFM|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47 Alpha-
Amylase 2ALPHA-Cyclodextrin Complex
pdb|1VFM|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47 Alpha-
Amylase 2ALPHA-Cyclodextrin Complex
pdb|1VFO|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47 Alpha-
Amylase 2BETA-Cyclodextrin Complex
pdb|1VFO|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47 Alpha-
Amylase 2BETA-Cyclodextrin Complex
pdb|1VFU|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47 Amylase
2GAMMA-Cyclodextrin Complex
pdb|1VFU|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47 Amylase
2GAMMA-Cyclodextrin Complex
Length = 585
Score = 34.3 bits (77), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 1014 FGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHA 1062
F +P KY D FG + LVDE H+ G+ ++LD V +HA
Sbjct: 196 FASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHA 245
>pdb|1BVZ|A Chain A, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris R-
47
pdb|1BVZ|B Chain B, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris R-
47
pdb|1JI2|A Chain A, Improved X-Ray Structure Of Thermoactinomyces Vulgaris R-47
Alpha-Amylase 2
pdb|1JI2|B Chain B, Improved X-Ray Structure Of Thermoactinomyces Vulgaris R-47
Alpha-Amylase 2
pdb|3A6O|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47 Alpha-
Amylase 2ACARBOSE COMPLEX
pdb|3A6O|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47 Alpha-
Amylase 2ACARBOSE COMPLEX
Length = 585
Score = 34.3 bits (77), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 1014 FGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHA 1062
F +P KY D FG + LVDE H+ G+ ++LD V +HA
Sbjct: 196 FASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHA 245
>pdb|1JF5|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47 Alpha-
Amylase 2 Mutant F286a
pdb|1JF5|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47 Alpha-
Amylase 2 Mutant F286a
Length = 585
Score = 34.3 bits (77), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 1014 FGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHA 1062
F +P KY D FG + LVDE H+ G+ ++LD V +HA
Sbjct: 196 FASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHA 245
>pdb|1JF6|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47 Alpha-
Amylase Mutant F286y
pdb|1JF6|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47 Alpha-
Amylase Mutant F286y
Length = 585
Score = 34.3 bits (77), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 1014 FGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHA 1062
F +P KY D FG + LVDE H+ G+ ++LD V +HA
Sbjct: 196 FASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHA 245
>pdb|3DHU|A Chain A, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|B Chain B, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|C Chain C, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|D Chain D, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
Length = 449
Score = 33.9 bits (76), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 77/177 (43%), Gaps = 45/177 (25%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092
+GT K L D H+ G+ V+LD+V++H S + + + F+HD
Sbjct: 80 YGTLADFKALTDRAHELGMKVMLDIVYNHTSPDSVLATEHPE----WFYHDA-------- 127
Query: 1093 DSRLFN----YSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYD 1148
D +L N +S+++ L + L W +YQ D ++LY +S D
Sbjct: 128 DGQLTNKVGDWSDVKDLDYGHHEL-W---QYQID--------TLLY--------WSQFVD 167
Query: 1149 EYFGLNVDTDALI---YLMVANKFLHDKYPEIITIAEDV-SGMPASCRPVTEGGTGF 1201
G D L+ + + A K ++ KYPE + +AE SG R ++G TG
Sbjct: 168 ---GYRCDVAPLVPLDFWLEARKQVNAKYPETLWLAESAGSGFIEELR--SQGYTGL 219
>pdb|1BF2|A Chain A, Structure Of Pseudomonas Isoamylase
Length = 750
Score = 33.1 bits (74), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 12/106 (11%)
Query: 1034 GTPEQLKYLVDECHKAGLYVLLDVVHSH--------ASKNVLDGLNEFDGTQACFFHDGP 1085
G + + +V H AG+ V +DVV++H +S + + G +++
Sbjct: 270 GPTAEFQAMVQAFHNAGIKVYMDVVYNHTAEGGTWTSSDPTTATIYSWRGLDNATYYELT 329
Query: 1086 RGTHPLWDSR----LFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 1127
G +D+ FN ++ +L ++ + DGFRFD
Sbjct: 330 SGNQYFYDNTGIGANFNTYNTVAQNLIVDSLAYWANTMGVDGFRFD 375
>pdb|1AVA|A Chain A, Amy2BASI PROTEIN-Protein Complex From Barley Seed
pdb|1AVA|B Chain B, Amy2BASI PROTEIN-Protein Complex From Barley Seed
pdb|1AMY|A Chain A, Crystal And Molecular Structure Of Barley Alpha-Amylase
pdb|1BG9|A Chain A, Barley Alpha-Amylase With Substrate Analogue Acarbose
Length = 403
Score = 32.3 bits (72), Expect = 2.0, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 31/124 (25%)
Query: 1030 AGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTH 1089
A +G QLK L+ H G+ + D+V +H + DG + C F G
Sbjct: 61 ASKYGNKAQLKSLIGALHGKGVKAIADIVINHRTAEHKDGRGIY-----CIFEGGTPDAR 115
Query: 1090 PLW-------DSRLF-------------------NYSEIEVLRFLLSNLRWYLDEYQFDG 1123
W D R + ++ + V + L+ L W + FDG
Sbjct: 116 LDWGPHMICRDDRPYADGTGNPDTGADFGAAPDIDHLNLRVQKELVEWLNWLKADIGFDG 175
Query: 1124 FRFD 1127
+RFD
Sbjct: 176 WRFD 179
>pdb|2GB3|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|B Chain B, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|C Chain C, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|D Chain D, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|E Chain E, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|F Chain F, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
Length = 409
Score = 32.0 bits (71), Expect = 2.2, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Query: 1006 IIDRACEKFGTPEQLKYLVDE----------CHKAGLFGTPEQLKYLVDECHKAGLYVLL 1055
+ R E F P+ L+ ++E C+ G+ ++ +YLV+ + GL++++
Sbjct: 153 VTRRXEEGFAIPQNLESFINERTKGIVLSNPCNPTGVVYGKDEXRYLVEIAERHGLFLIV 212
Query: 1056 DVVHS 1060
D V+S
Sbjct: 213 DEVYS 217
>pdb|2TAA|A Chain A, Structure And Possible Catalytic Residues Of Taka-Amylase A
pdb|2TAA|B Chain B, Structure And Possible Catalytic Residues Of Taka-Amylase A
pdb|2TAA|C Chain C, Structure And Possible Catalytic Residues Of Taka-Amylase A
Length = 478
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSH 1061
+GT + LK L H+ G+Y+++DVV +H
Sbjct: 94 YGTADDLKALSSALHERGMYLMVDVVANH 122
>pdb|2GUY|A Chain A, Orthorhombic Crystal Structure (Space Group P21212) Of
Aspergillus Niger Alpha-Amylase At 1.6 A Resolution
pdb|2GVY|A Chain A, Monoclinic Crystal Form Of Aspergillus Niger Alpha-Amylase
In Complex With Maltose At 1.8 A Resolution
pdb|2GVY|B Chain B, Monoclinic Crystal Form Of Aspergillus Niger Alpha-Amylase
In Complex With Maltose At 1.8 A Resolution
pdb|6TAA|A Chain A, Structure And Molecular Model Refinement Of Aspergillus
Oryzae (Taka) Alpha-Amylase: An Application Of The
Simulated-Annealing Method
pdb|7TAA|A Chain A, Family 13 Alpha Amylase In Complex With Acarbose
pdb|3KWX|A Chain A, Chemically Modified Taka Alpha-Amylase
Length = 478
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSH 1061
+GT + LK L H+ G+Y+++DVV +H
Sbjct: 94 YGTADDLKALSSALHERGMYLMVDVVANH 122
>pdb|4G1T|A Chain A, Crystal Structure Of Interferon-Stimulated Gene 54
pdb|4G1T|B Chain B, Crystal Structure Of Interferon-Stimulated Gene 54
Length = 472
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 972 ESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDR---ACEKFGTP 1017
E DQA + +++ W +Y HM LSD + +D+ CEKF +P
Sbjct: 84 EHADQAEI--RSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130
>pdb|2WC7|A Chain A, Crystal Structure Of Nostoc Punctiforme Debranching Enzyme(
Npde)(Acarbose Soaked)
pdb|2WCS|A Chain A, Crystal Structure Of Debranching Enzyme From Nostoc
Punctiforme (Npde)
pdb|2WKG|A Chain A, Nostoc Punctiforme Debranching Enzyme (Npde)(Native Form)
Length = 488
Score = 30.0 bits (66), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 17/73 (23%)
Query: 1032 LFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDG-PRGTHP 1090
+ G E K L+D H+ + V+LD V +H+S+ FFHD G H
Sbjct: 98 MLGGNEAFKELLDAAHQRNIKVVLDGVFNHSSRGFF------------FFHDVLENGPHS 145
Query: 1091 LWDSRLFNYSEIE 1103
W N+ +IE
Sbjct: 146 PW----VNWFKIE 154
>pdb|4CGT|A Chain A, Deletion Mutant Delta(145-150), F151d Of Cyclodextrin
Glycosyltransferase
Length = 678
Score = 30.0 bits (66), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 19/118 (16%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDG----------TQACFFH 1082
FGT + L+ H G+ +++D +H S + +D T F H
Sbjct: 112 FGTMADFQNLITTAHAKGIKIVIDFAPNHTSPADAENGRLYDNGTLVGGYTNDTNGYFHH 171
Query: 1083 DG-------PRGTHP-LWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM 1132
+G G + L+D FN++ + ++ ++ +LD DG R D V M
Sbjct: 172 NGGSDFSSLENGIYKNLYDLADFNHNNATIDKYFKDAIKLWLD-MGVDGIRVDAVKHM 228
>pdb|1D7F|A Chain A, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1D7F|B Chain B, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1DED|A Chain A, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
pdb|1DED|B Chain B, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
Length = 686
Score = 30.0 bits (66), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 50/128 (39%), Gaps = 33/128 (25%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASK------------------NVLDGLNEFD 1074
+GT + K L+D H + V++D +H S N+L G +
Sbjct: 112 YGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLYDNGNLLGGYT--N 169
Query: 1075 GTQACFFHDGPRGT----------HPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGF 1124
TQ F H G GT L+D N++ V +L ++ +LD DG
Sbjct: 170 DTQNLFHHYG--GTDFSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMWLD-LGVDGI 226
Query: 1125 RFDGVTSM 1132
R D V +M
Sbjct: 227 RVDAVKNM 234
>pdb|1HOV|A Chain A, Solution Structure Of A Catalytic Domain Of Mmp-2 Complexed
With Sc-74020
Length = 163
Score = 30.0 bits (66), Expect = 9.8, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 1122 DGFRFDGVTSMLYHNHGCGEGFSG--HY-DEYFGLNVDTDALIYLMVANKFLH 1171
DG+ FDG +L H G G G H+ D+ N + ++L+ A++F H
Sbjct: 72 DGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTNTSANYSLFLVAAHEFGH 124
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.140 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,803,195
Number of Sequences: 62578
Number of extensions: 2319520
Number of successful extensions: 7780
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 6642
Number of HSP's gapped (non-prelim): 1113
length of query: 1276
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1166
effective length of database: 8,089,757
effective search space: 9432656662
effective search space used: 9432656662
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)