Query psy9003
Match_columns 1276
No_of_seqs 538 out of 3830
Neff 4.9
Searched_HMMs 46136
Date Sat Aug 17 01:18:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9003.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9003hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02447 1,4-alpha-glucan-bran 100.0 2.9E-77 6.2E-82 729.0 44.3 448 749-1275 90-674 (758)
2 PRK12568 glycogen branching en 100.0 2.4E-66 5.2E-71 632.2 40.1 421 761-1276 122-674 (730)
3 PRK14706 glycogen branching en 100.0 4.4E-65 9.5E-70 620.8 40.6 420 761-1276 22-568 (639)
4 PRK14705 glycogen branching en 100.0 2.1E-65 4.5E-70 648.4 38.9 422 763-1276 620-1168(1224)
5 PLN02960 alpha-amylase 100.0 1.2E-64 2.6E-69 617.8 43.6 447 749-1275 103-834 (897)
6 KOG0470|consensus 100.0 9.3E-63 2E-67 584.0 30.3 451 754-1275 93-696 (757)
7 TIGR01515 branching_enzym alph 100.0 1.3E-60 2.8E-65 582.0 39.6 421 761-1276 12-560 (613)
8 PRK12313 glycogen branching en 100.0 2.8E-60 6.1E-65 581.5 42.0 420 763-1275 24-572 (633)
9 PRK05402 glycogen branching en 100.0 1.4E-59 3E-64 582.5 43.4 427 755-1275 104-668 (726)
10 PLN03244 alpha-amylase; Provis 100.0 1E-58 2.3E-63 556.5 39.4 415 752-1276 109-810 (872)
11 COG0296 GlgB 1,4-alpha-glucan 100.0 1.4E-58 3.1E-63 553.7 30.4 353 760-1206 20-380 (628)
12 TIGR02103 pullul_strch alpha-1 100.0 2.5E-54 5.4E-59 536.7 31.2 352 758-1185 114-528 (898)
13 TIGR02104 pulA_typeI pullulana 100.0 3.1E-53 6.6E-58 517.1 30.2 327 759-1189 2-355 (605)
14 PLN02877 alpha-amylase/limit d 100.0 6.8E-52 1.5E-56 513.8 31.3 347 758-1185 204-599 (970)
15 TIGR02102 pullulan_Gpos pullul 100.0 2.1E-51 4.5E-56 518.7 33.8 346 758-1186 308-675 (1111)
16 PRK03705 glycogen debranching 100.0 4.9E-50 1.1E-54 490.0 30.7 333 770-1187 9-376 (658)
17 TIGR02100 glgX_debranch glycog 100.0 6.3E-50 1.4E-54 491.8 31.8 328 770-1187 4-382 (688)
18 TIGR02402 trehalose_TreZ malto 100.0 2.9E-49 6.3E-54 476.3 30.7 298 782-1208 1-307 (542)
19 COG1523 PulA Type II secretory 100.0 4.7E-49 1E-53 478.4 25.8 304 770-1135 17-367 (697)
20 PRK14510 putative bifunctional 100.0 5.4E-46 1.2E-50 478.7 31.2 382 769-1249 12-457 (1221)
21 PRK10785 maltodextrin glucosid 100.0 1E-35 2.2E-40 363.0 27.2 357 777-1253 16-457 (598)
22 PLN02447 1,4-alpha-glucan-bran 100.0 1.3E-34 2.9E-39 355.1 19.0 164 16-180 58-315 (758)
23 TIGR02403 trehalose_treC alpha 100.0 3.3E-33 7.2E-38 337.7 19.7 283 892-1253 1-329 (543)
24 TIGR02456 treS_nterm trehalose 100.0 1.5E-32 3.4E-37 331.8 20.3 205 892-1184 2-241 (539)
25 PRK10933 trehalose-6-phosphate 100.0 3.8E-32 8.1E-37 328.8 20.9 284 890-1252 5-334 (551)
26 PRK09505 malS alpha-amylase; R 100.0 5.7E-30 1.2E-34 314.3 22.6 274 890-1252 184-575 (683)
27 PF00128 Alpha-amylase: Alpha 100.0 4E-31 8.8E-36 290.5 9.4 236 913-1249 1-277 (316)
28 PRK09441 cytoplasmic alpha-amy 100.0 4E-29 8.7E-34 298.4 19.9 206 913-1206 19-291 (479)
29 COG0296 GlgB 1,4-alpha-glucan 100.0 4.4E-29 9.5E-34 300.6 13.5 122 59-180 20-229 (628)
30 PLN00196 alpha-amylase; Provis 99.9 1.1E-25 2.5E-30 264.9 16.9 186 895-1186 24-232 (428)
31 PRK14705 glycogen branching en 99.9 8.9E-26 1.9E-30 288.5 14.4 123 58-180 616-830 (1224)
32 PRK12568 glycogen branching en 99.9 1.1E-25 2.4E-30 276.4 14.2 120 59-180 121-334 (730)
33 PLN02361 alpha-amylase 99.9 9.6E-25 2.1E-29 254.8 19.3 169 914-1186 27-208 (401)
34 PRK14706 glycogen branching en 99.9 6.2E-24 1.3E-28 260.7 13.4 122 59-180 21-232 (639)
35 PLN02960 alpha-amylase 99.9 1.5E-23 3.2E-28 258.4 16.3 68 27-94 82-149 (897)
36 COG0366 AmyA Glycosidases [Car 99.9 9.9E-23 2.1E-27 241.3 21.1 164 896-1133 1-204 (505)
37 PLN02784 alpha-amylase 99.9 2E-22 4.4E-27 247.5 18.8 188 894-1186 497-702 (894)
38 PRK13840 sucrose phosphorylase 99.9 6E-21 1.3E-25 227.2 18.6 182 912-1187 16-238 (495)
39 PRK05402 glycogen branching en 99.9 1.5E-21 3.2E-26 243.8 14.1 148 19-180 87-330 (726)
40 PRK12313 glycogen branching en 99.9 3.1E-21 6.7E-26 237.9 14.4 119 60-180 22-235 (633)
41 TIGR01515 branching_enzym alph 99.8 8.6E-21 1.9E-25 233.1 14.1 122 59-180 11-221 (613)
42 TIGR02455 TreS_stutzeri trehal 99.8 5.9E-20 1.3E-24 220.3 18.8 267 895-1244 51-404 (688)
43 TIGR03852 sucrose_gtfA sucrose 99.8 1.8E-20 3.9E-25 222.0 12.3 239 909-1247 13-292 (470)
44 KOG0471|consensus 99.8 2.5E-20 5.4E-25 225.9 12.3 169 891-1133 13-219 (545)
45 PF14872 GHL5: Hypothetical gl 99.8 3.7E-18 8E-23 201.4 24.6 397 765-1246 27-505 (811)
46 KOG0470|consensus 99.8 1.2E-19 2.6E-24 218.0 10.4 166 13-180 51-326 (757)
47 TIGR02401 trehalose_TreY malto 99.8 4E-18 8.7E-23 211.6 16.8 193 912-1203 12-305 (825)
48 cd02854 Glycogen_branching_enz 99.7 1.8E-16 3.9E-21 152.8 11.5 86 780-865 5-90 (99)
49 smart00642 Aamy Alpha-amylase 99.6 2.9E-16 6.3E-21 164.2 9.0 94 901-1064 2-97 (166)
50 PLN03244 alpha-amylase; Provis 99.6 6.8E-16 1.5E-20 188.5 11.7 71 27-99 85-155 (872)
51 PHA02876 ankyrin repeat protei 99.6 4.8E-15 1E-19 184.3 17.0 300 274-617 154-472 (682)
52 PHA02876 ankyrin repeat protei 99.6 2.9E-15 6.4E-20 186.2 12.5 296 389-724 155-465 (682)
53 PHA02946 ankyin-like protein; 99.5 1.2E-13 2.7E-18 164.6 16.1 283 390-724 50-377 (446)
54 PHA02917 ankyrin-like protein; 99.5 3.8E-13 8.2E-18 167.2 20.2 339 306-685 106-507 (661)
55 PRK14511 maltooligosyl trehalo 99.5 2.1E-13 4.6E-18 170.7 16.6 82 913-1066 17-98 (879)
56 PHA02946 ankyin-like protein; 99.5 2.6E-13 5.6E-18 161.8 16.0 77 487-574 188-267 (446)
57 PHA02874 ankyrin repeat protei 99.5 1.3E-13 2.8E-18 162.7 12.8 301 273-648 9-311 (434)
58 PHA02917 ankyrin-like protein; 99.5 4.1E-13 8.9E-18 166.9 17.3 381 218-647 45-507 (661)
59 TIGR02104 pulA_typeI pullulana 99.5 8.8E-14 1.9E-18 171.5 10.5 95 64-160 11-178 (605)
60 cd02860 Pullulanase_N_term Pul 99.5 2E-13 4.4E-18 131.0 10.5 91 773-871 1-95 (100)
61 PHA03100 ankyrin repeat protei 99.5 1.1E-13 2.3E-18 164.2 10.4 218 386-647 80-304 (480)
62 TIGR02402 trehalose_TreZ malto 99.5 1E-13 2.2E-18 168.8 10.4 103 75-180 1-175 (542)
63 PHA02730 ankyrin-like protein; 99.5 8.8E-13 1.9E-17 162.2 17.5 370 246-647 41-519 (672)
64 PHA03100 ankyrin repeat protei 99.5 1.5E-13 3.3E-18 163.0 10.5 284 278-616 15-311 (480)
65 PRK14507 putative bifunctional 99.4 1.4E-12 3E-17 171.8 18.2 92 895-1064 743-834 (1693)
66 PF02922 CBM_48: Carbohydrate- 99.4 4.7E-13 1E-17 123.9 8.4 80 772-857 1-85 (85)
67 PHA02875 ankyrin repeat protei 99.4 2.8E-13 6E-18 158.3 8.2 226 305-577 4-229 (413)
68 PHA02874 ankyrin repeat protei 99.4 1.7E-12 3.6E-17 153.3 12.6 269 347-685 7-276 (434)
69 PHA02730 ankyrin-like protein; 99.4 8.9E-12 1.9E-16 153.5 16.8 374 278-685 20-519 (672)
70 PHA02716 CPXV016; CPX019; EVM0 99.3 2.8E-11 6.1E-16 151.4 20.8 64 549-617 496-569 (764)
71 PHA02875 ankyrin repeat protei 99.3 2.3E-12 5E-17 150.6 9.4 225 345-617 6-231 (413)
72 PHA02878 ankyrin repeat protei 99.3 3.2E-12 6.9E-17 152.8 10.4 278 270-611 42-324 (477)
73 PRK03705 glycogen debranching 99.3 4.2E-12 9.2E-17 157.4 11.5 57 64-122 11-77 (658)
74 PHA02791 ankyrin-like protein; 99.3 7.5E-12 1.6E-16 141.5 11.4 206 389-647 9-215 (284)
75 PHA02716 CPXV016; CPX019; EVM0 99.3 1.2E-11 2.6E-16 154.7 13.9 216 275-535 189-426 (764)
76 cd02856 Glycogen_debranching_e 99.3 5.9E-12 1.3E-16 121.8 8.8 86 772-865 1-95 (103)
77 PHA02791 ankyrin-like protein; 99.3 5.1E-12 1.1E-16 142.9 9.5 176 388-614 70-246 (284)
78 KOG4177|consensus 99.3 3.9E-12 8.5E-17 162.0 9.4 481 212-746 58-631 (1143)
79 cd02854 Glycogen_branching_enz 99.3 4.8E-12 1E-16 122.3 7.6 54 71-124 3-72 (99)
80 PHA02878 ankyrin repeat protei 99.3 5.3E-12 1.2E-16 150.9 8.8 283 301-647 35-322 (477)
81 TIGR02100 glgX_debranch glycog 99.3 1.2E-11 2.6E-16 154.3 11.8 56 64-121 6-73 (688)
82 TIGR02103 pullul_strch alpha-1 99.3 1.3E-11 2.9E-16 156.2 11.2 95 65-160 128-300 (898)
83 PHA02989 ankyrin repeat protei 99.3 2.6E-11 5.7E-16 145.9 12.9 216 389-647 85-310 (494)
84 PHA03095 ankyrin-like protein; 99.3 4.3E-11 9.4E-16 141.6 14.5 59 476-539 85-146 (471)
85 KOG4177|consensus 99.3 1.5E-11 3.2E-16 156.8 11.0 451 245-741 53-593 (1143)
86 cd02852 Isoamylase_N_term Isoa 99.3 1.4E-11 3.1E-16 121.8 8.5 86 774-867 1-101 (119)
87 PHA03095 ankyrin-like protein; 99.2 4.1E-11 8.8E-16 141.9 13.1 286 273-614 22-316 (471)
88 TIGR02102 pullulan_Gpos pullul 99.2 4.7E-11 1E-15 153.9 13.9 96 64-160 318-494 (1111)
89 PHA02989 ankyrin repeat protei 99.2 2.3E-10 4.9E-15 137.9 15.9 288 276-611 14-312 (494)
90 cd02855 Glycogen_branching_enz 99.2 1.7E-10 3.6E-15 110.8 10.7 79 780-865 21-100 (106)
91 PRK14510 putative bifunctional 99.2 8.4E-11 1.8E-15 154.3 11.2 59 63-123 14-84 (1221)
92 cd02855 Glycogen_branching_enz 99.1 1.4E-10 3.1E-15 111.3 9.2 75 57-133 2-106 (106)
93 PHA02798 ankyrin-like protein; 99.1 2.1E-10 4.6E-15 138.0 11.7 290 277-615 17-318 (489)
94 KOG2212|consensus 99.1 7.5E-10 1.6E-14 124.5 14.8 102 1030-1132 88-220 (504)
95 PF02922 CBM_48: Carbohydrate- 99.1 1.9E-10 4.1E-15 106.6 7.4 58 65-124 2-75 (85)
96 KOG4412|consensus 99.0 3.5E-10 7.6E-15 118.4 6.3 162 342-578 39-200 (226)
97 PHA02798 ankyrin-like protein; 99.0 9.1E-10 2E-14 132.5 10.6 288 313-647 15-312 (489)
98 COG3280 TreY Maltooligosyl tre 99.0 2.5E-09 5.5E-14 129.8 13.8 80 914-1065 17-96 (889)
99 PLN02877 alpha-amylase/limit d 99.0 1.7E-09 3.6E-14 137.5 12.5 55 64-120 214-280 (970)
100 cd02853 MTHase_N_term Maltooli 99.0 1.1E-09 2.4E-14 102.5 7.9 72 774-861 1-73 (85)
101 KOG0508|consensus 99.0 1.9E-09 4E-14 125.3 10.8 214 201-455 28-251 (615)
102 KOG0508|consensus 98.9 2.8E-09 6E-14 123.9 10.1 179 272-476 49-236 (615)
103 PHA02792 ankyrin-like protein; 98.9 1.1E-08 2.3E-13 125.8 15.7 240 353-621 194-443 (631)
104 cd02853 MTHase_N_term Maltooli 98.9 4.5E-09 9.7E-14 98.4 8.0 67 66-134 1-84 (85)
105 TIGR01531 glyc_debranch glycog 98.9 2.8E-09 6.1E-14 137.8 7.6 50 1020-1069 162-217 (1464)
106 PHA02792 ankyrin-like protein; 98.9 6.7E-08 1.5E-12 118.9 18.9 338 259-648 72-432 (631)
107 cd02860 Pullulanase_N_term Pul 98.8 7.3E-09 1.6E-13 99.7 8.1 58 65-124 1-71 (100)
108 cd02858 Esterase_N_term Estera 98.8 2.1E-08 4.6E-13 94.3 9.2 70 780-862 6-75 (85)
109 KOG4412|consensus 98.8 7.8E-09 1.7E-13 108.6 5.6 168 410-619 35-203 (226)
110 KOG0510|consensus 98.8 2E-08 4.4E-13 122.9 9.7 381 343-772 90-507 (929)
111 cd02861 E_set_proteins_like E 98.7 6.9E-08 1.5E-12 90.0 8.6 70 781-863 3-72 (82)
112 PHA02795 ankyrin-like protein; 98.6 3.7E-08 8E-13 117.1 6.9 130 476-615 151-289 (437)
113 cd02856 Glycogen_debranching_e 98.6 1.5E-07 3.2E-12 91.3 8.1 56 65-122 2-67 (103)
114 KOG0510|consensus 98.6 1.3E-07 2.8E-12 116.1 8.5 306 298-654 87-405 (929)
115 cd02852 Isoamylase_N_term Isoa 98.5 2.2E-07 4.7E-12 92.2 8.4 54 66-121 1-70 (119)
116 cd02861 E_set_proteins_like E 98.5 1.9E-07 4.1E-12 87.1 6.4 47 73-120 2-56 (82)
117 cd02858 Esterase_N_term Estera 98.5 3.3E-07 7.2E-12 86.3 6.8 58 72-132 5-72 (85)
118 PHA02795 ankyrin-like protein; 98.4 2.8E-07 6.2E-12 109.8 6.9 188 423-647 83-283 (437)
119 PHA02859 ankyrin repeat protei 98.4 3.9E-07 8.6E-12 98.6 5.8 160 418-619 22-190 (209)
120 PLN03192 Voltage-dependent pot 98.3 4.7E-07 1E-11 116.2 6.0 151 386-577 532-682 (823)
121 PHA02859 ankyrin repeat protei 98.2 1E-06 2.2E-11 95.5 5.2 148 389-577 31-186 (209)
122 PLN03192 Voltage-dependent pot 98.2 1.1E-06 2.4E-11 112.8 5.9 159 419-618 527-685 (823)
123 PF02638 DUF187: Glycosyl hydr 98.2 1.2E-05 2.7E-10 92.6 13.1 138 1036-1180 69-226 (311)
124 KOG0509|consensus 98.2 2.7E-06 5.9E-11 103.0 7.0 188 265-494 44-232 (600)
125 KOG0509|consensus 97.9 6.1E-06 1.3E-10 100.1 4.4 191 380-612 45-236 (600)
126 TIGR00870 trp transient-recept 97.9 1.7E-05 3.7E-10 100.8 8.6 180 386-589 24-216 (743)
127 cd02688 E_set E or "early" set 97.9 3E-05 6.5E-10 70.3 7.1 50 73-124 4-64 (83)
128 cd02688 E_set E or "early" set 97.9 3.6E-05 7.8E-10 69.8 7.4 58 780-844 4-61 (83)
129 TIGR00870 trp transient-recept 97.9 4.2E-05 9.1E-10 97.3 10.4 250 300-577 14-284 (743)
130 PF14871 GHL6: Hypothetical gl 97.6 0.00023 5E-09 72.8 9.6 86 1031-1128 39-132 (132)
131 cd02859 AMPKbeta_GBD_like AMP- 97.6 0.00015 3.2E-09 67.7 7.1 64 781-859 3-66 (79)
132 PF14701 hDGE_amylase: glucano 97.6 0.00014 3.1E-09 86.5 8.4 90 912-1068 18-108 (423)
133 PHA02743 Viral ankyrin protein 97.6 5.2E-05 1.1E-09 79.3 3.9 138 403-577 10-155 (166)
134 COG1523 PulA Type II secretory 97.5 0.00022 4.7E-09 89.7 9.3 60 63-122 18-91 (697)
135 KOG4369|consensus 97.5 0.00021 4.6E-09 90.2 8.6 235 342-609 758-1015(2131)
136 KOG0507|consensus 97.5 0.0001 2.3E-09 90.8 4.9 58 288-360 42-101 (854)
137 PLN03218 maturation of RBCL 1; 97.4 0.71 1.5E-05 61.9 39.7 208 445-667 591-798 (1060)
138 PF12796 Ank_2: Ankyrin repeat 97.4 0.00017 3.7E-09 66.7 4.4 87 517-617 2-88 (89)
139 PHA02741 hypothetical protein; 97.4 0.00011 2.4E-09 76.8 3.5 122 304-438 22-153 (169)
140 COG1649 Uncharacterized protei 97.4 0.0016 3.4E-08 77.8 13.1 133 1036-1179 114-268 (418)
141 PLN03218 maturation of RBCL 1; 97.3 0.066 1.4E-06 71.4 28.1 277 447-744 521-799 (1060)
142 PF02324 Glyco_hydro_70: Glyco 97.3 0.00042 9E-09 85.2 7.2 109 895-1064 564-674 (809)
143 PHA02743 Viral ankyrin protein 97.2 0.00027 5.9E-09 74.0 4.3 130 476-620 22-160 (166)
144 KOG0507|consensus 97.2 0.00041 9E-09 85.8 6.3 194 342-573 50-244 (854)
145 PHA02736 Viral ankyrin protein 97.2 0.00017 3.7E-09 73.8 2.6 94 475-577 56-153 (154)
146 PF12796 Ank_2: Ankyrin repeat 97.2 0.00026 5.7E-09 65.5 3.5 87 478-578 1-87 (89)
147 PHA02741 hypothetical protein; 97.1 0.00048 1E-08 72.1 4.7 135 410-575 18-157 (169)
148 KOG0514|consensus 97.1 0.00089 1.9E-08 77.4 6.9 152 270-435 273-425 (452)
149 PLN03077 Protein ECB2; Provisi 97.0 0.84 1.8E-05 59.7 34.1 37 161-197 64-100 (857)
150 PHA02884 ankyrin repeat protei 96.9 0.0013 2.9E-08 75.7 5.8 123 514-647 35-158 (300)
151 PF13637 Ank_4: Ankyrin repeat 96.7 0.00058 1.3E-08 58.4 1.3 48 385-437 7-54 (54)
152 KOG0505|consensus 96.7 0.0018 3.9E-08 78.0 5.5 80 276-365 51-130 (527)
153 PLN03077 Protein ECB2; Provisi 96.7 3.5 7.7E-05 54.0 35.5 119 597-727 566-685 (857)
154 PHA02884 ankyrin repeat protei 96.7 0.0021 4.6E-08 74.1 5.4 123 476-609 35-158 (300)
155 cd00204 ANK ankyrin repeats; 96.6 0.002 4.4E-08 60.7 4.2 118 305-437 9-126 (126)
156 KOG0514|consensus 96.5 0.0061 1.3E-07 70.7 7.9 145 372-536 238-397 (452)
157 cd06597 GH31_transferase_CtsY 96.4 0.0063 1.4E-07 71.4 7.4 93 1038-1131 86-188 (340)
158 PHA02736 Viral ankyrin protein 96.3 0.0026 5.6E-08 65.2 2.8 127 475-615 18-153 (154)
159 PF02065 Melibiase: Melibiase; 96.2 0.028 6.1E-07 67.3 11.5 126 1037-1182 104-233 (394)
160 KOG0502|consensus 96.2 0.0048 1E-07 67.6 4.3 97 331-441 153-250 (296)
161 KOG4369|consensus 96.1 0.019 4.1E-07 73.6 9.7 274 296-614 750-1086(2131)
162 cd06592 GH31_glucosidase_KIAA1 96.1 0.0094 2E-07 68.7 6.5 87 1039-1130 72-165 (303)
163 cd06593 GH31_xylosidase_YicI Y 96.1 0.031 6.8E-07 64.3 10.7 89 1039-1133 68-162 (308)
164 cd06594 GH31_glucosidase_YihQ 96.0 0.009 1.9E-07 69.4 5.9 91 1038-1132 72-168 (317)
165 PF00128 Alpha-amylase: Alpha 96.0 0.0044 9.5E-08 68.9 3.2 37 143-180 2-67 (316)
166 smart00642 Aamy Alpha-amylase 96.0 0.0079 1.7E-07 63.8 4.8 37 143-180 17-85 (166)
167 PF02806 Alpha-amylase_C: Alph 95.6 0.012 2.5E-07 56.1 3.8 39 1237-1275 1-44 (95)
168 PF13199 Glyco_hydro_66: Glyco 95.4 0.079 1.7E-06 66.0 11.0 92 1035-1132 168-270 (559)
169 cd06602 GH31_MGAM_SI_GAA This 95.4 0.03 6.4E-07 65.8 7.0 90 1040-1130 69-165 (339)
170 cd06600 GH31_MGAM-like This fa 95.4 0.025 5.3E-07 65.8 6.2 90 1038-1130 65-160 (317)
171 cd02859 AMPKbeta_GBD_like AMP- 95.4 0.028 6.2E-07 52.5 5.4 42 74-119 3-54 (79)
172 cd00204 ANK ankyrin repeats; 95.3 0.023 5E-07 53.5 4.7 118 513-645 8-125 (126)
173 KOG0515|consensus 95.3 0.023 5E-07 68.4 5.5 48 410-462 613-660 (752)
174 cd06591 GH31_xylosidase_XylS X 95.2 0.032 6.9E-07 64.9 6.4 87 1039-1130 68-159 (319)
175 PLN03081 pentatricopeptide (PP 95.0 10 0.00022 48.7 28.2 221 483-728 302-523 (697)
176 cd06599 GH31_glycosidase_Aec37 94.8 0.045 9.8E-07 63.6 6.3 88 1038-1130 74-168 (317)
177 TIGR02403 trehalose_treC alpha 94.7 0.028 6E-07 69.9 4.3 20 161-180 71-90 (543)
178 PF13857 Ank_5: Ankyrin repeat 94.5 0.012 2.6E-07 51.1 0.6 50 398-452 1-50 (56)
179 KOG0505|consensus 94.5 0.072 1.6E-06 64.8 7.0 186 444-647 48-252 (527)
180 PLN03081 pentatricopeptide (PP 94.4 5.2 0.00011 51.3 23.7 215 523-762 238-452 (697)
181 PRK10933 trehalose-6-phosphate 94.1 0.048 1E-06 68.0 4.5 20 161-180 77-96 (551)
182 PLN02361 alpha-amylase 94.0 0.059 1.3E-06 64.8 5.0 36 144-180 28-91 (401)
183 KOG4214|consensus 93.9 0.037 8.1E-07 53.9 2.5 67 513-584 35-101 (117)
184 KOG0512|consensus 93.7 0.073 1.6E-06 57.0 4.3 147 315-474 23-183 (228)
185 KOG0195|consensus 93.5 0.069 1.5E-06 60.6 3.9 90 340-440 33-123 (448)
186 PLN02784 alpha-amylase 93.4 0.078 1.7E-06 68.3 4.7 36 144-180 520-583 (894)
187 TIGR02456 treS_nterm trehalose 93.4 0.073 1.6E-06 66.2 4.4 46 1216-1262 440-489 (539)
188 PF13637 Ank_4: Ankyrin repeat 93.2 0.066 1.4E-06 45.8 2.5 51 514-569 3-53 (54)
189 PRK09441 cytoplasmic alpha-amy 93.1 0.094 2E-06 64.2 4.7 16 144-160 21-36 (479)
190 PRK10785 maltodextrin glucosid 93.0 0.098 2.1E-06 65.9 4.9 37 143-180 177-241 (598)
191 KOG4214|consensus 93.0 0.076 1.7E-06 51.8 2.9 93 520-623 10-102 (117)
192 TIGR01370 cysRS possible cyste 93.0 0.51 1.1E-05 55.3 10.2 118 1040-1180 84-210 (315)
193 PLN00196 alpha-amylase; Provis 93.0 0.11 2.4E-06 62.9 5.0 20 161-180 88-107 (428)
194 PF00150 Cellulase: Cellulase 92.7 2.8 6.1E-05 46.5 15.2 106 1035-1183 60-172 (281)
195 PRK10658 putative alpha-glucos 92.4 0.16 3.5E-06 64.8 5.5 89 1038-1132 326-420 (665)
196 PF13606 Ank_3: Ankyrin repeat 92.4 0.047 1E-06 42.2 0.5 22 419-440 4-25 (30)
197 cd06604 GH31_glucosidase_II_Ma 92.3 0.19 4E-06 59.0 5.5 88 1039-1130 66-159 (339)
198 PRK10426 alpha-glucosidase; Pr 92.2 0.2 4.3E-06 63.7 6.0 90 1038-1132 270-365 (635)
199 PTZ00322 6-phosphofructo-2-kin 92.1 0.11 2.5E-06 66.1 3.8 89 474-572 82-170 (664)
200 COG0666 Arp FOG: Ankyrin repea 92.1 0.25 5.3E-06 51.1 5.6 122 512-648 73-202 (235)
201 cd06598 GH31_transferase_CtsZ 92.0 0.28 6E-06 57.2 6.5 86 1039-1130 72-164 (317)
202 PF01055 Glyco_hydro_31: Glyco 91.9 0.086 1.9E-06 63.5 2.2 91 1038-1130 84-180 (441)
203 PRK09505 malS alpha-amylase; R 91.5 0.2 4.3E-06 64.1 4.9 17 143-160 228-244 (683)
204 PTZ00322 6-phosphofructo-2-kin 91.2 0.24 5.3E-06 63.1 5.3 90 511-610 81-170 (664)
205 cd02875 GH18_chitobiase Chitob 91.1 0.82 1.8E-05 54.3 9.2 85 1040-1177 67-152 (358)
206 cd06595 GH31_xylosidase_XylS-l 90.6 0.45 9.8E-06 54.8 6.3 84 1038-1129 75-158 (292)
207 PF00023 Ank: Ankyrin repeat H 90.5 0.13 2.8E-06 39.9 1.3 24 419-442 4-27 (33)
208 COG0666 Arp FOG: Ankyrin repea 90.4 0.35 7.6E-06 50.0 4.7 122 475-611 74-203 (235)
209 PLN02635 disproportionating en 90.3 1 2.2E-05 56.2 9.3 139 1036-1189 223-377 (538)
210 COG1501 Alpha-glucosidases, fa 90.2 0.41 8.8E-06 62.1 5.9 88 1040-1132 324-417 (772)
211 KOG0506|consensus 89.9 0.27 5.9E-06 59.1 3.8 82 347-437 512-593 (622)
212 PRK14508 4-alpha-glucanotransf 89.7 1.3 2.9E-05 54.9 9.6 143 1036-1193 197-355 (497)
213 PRK14582 pgaB outer membrane N 89.6 2.2 4.8E-05 54.7 11.7 79 1046-1132 390-470 (671)
214 KOG3625|consensus 89.5 0.5 1.1E-05 60.6 5.7 34 1035-1068 194-228 (1521)
215 cd06603 GH31_GANC_GANAB_alpha 89.2 0.46 1E-05 55.8 5.0 89 1038-1129 65-161 (339)
216 KOG0502|consensus 88.9 0.97 2.1E-05 50.3 6.7 230 351-642 41-277 (296)
217 PRK14511 maltooligosyl trehalo 88.3 0.51 1.1E-05 61.6 4.9 50 1215-1264 767-823 (879)
218 KOG0515|consensus 88.3 0.36 7.9E-06 58.7 3.3 122 389-543 560-684 (752)
219 PLN02763 hydrolase, hydrolyzin 88.2 0.93 2E-05 59.9 7.1 88 1038-1129 242-335 (978)
220 TIGR02401 trehalose_TreY malto 87.6 0.51 1.1E-05 61.3 4.2 49 1215-1263 714-769 (825)
221 cd06542 GH18_EndoS-like Endo-b 87.4 1.5 3.4E-05 49.0 7.5 64 1035-1128 49-112 (255)
222 cd06601 GH31_lyase_GLase GLase 87.1 1.6 3.4E-05 51.6 7.6 66 1040-1129 67-132 (332)
223 PF13857 Ank_5: Ankyrin repeat 87.0 0.21 4.6E-06 43.4 0.3 35 385-424 22-56 (56)
224 PF13200 DUF4015: Putative gly 85.2 2.1 4.6E-05 50.2 7.3 83 1036-1129 60-146 (316)
225 cd06545 GH18_3CO4_chitinase Th 85.0 4.1 8.9E-05 45.8 9.3 87 1036-1173 45-131 (253)
226 PF11941 DUF3459: Domain of un 84.9 1.2 2.7E-05 41.7 4.3 48 1217-1264 1-54 (89)
227 PRK14507 putative bifunctional 84.8 0.83 1.8E-05 63.3 4.3 39 141-180 754-822 (1693)
228 PF07745 Glyco_hydro_53: Glyco 84.5 5 0.00011 47.6 9.9 119 1034-1181 55-174 (332)
229 PRK11052 malQ 4-alpha-glucanot 83.3 5.9 0.00013 51.2 10.7 141 1037-1191 355-507 (695)
230 KOG0512|consensus 82.6 1.8 3.8E-05 46.9 4.7 120 353-501 23-157 (228)
231 PF13606 Ank_3: Ankyrin repeat 82.1 0.65 1.4E-05 35.9 1.0 27 513-539 3-29 (30)
232 PF02324 Glyco_hydro_70: Glyco 81.3 3.8 8.2E-05 52.0 7.6 39 1094-1132 143-190 (809)
233 cd05808 CBM20_alpha_amylase Al 80.8 5.2 0.00011 38.1 6.9 62 782-849 3-70 (95)
234 COG0366 AmyA Glycosidases [Car 79.9 1.5 3.2E-05 53.1 3.5 50 1215-1264 432-486 (505)
235 PLN02950 4-alpha-glucanotransf 79.8 33 0.00072 45.9 15.8 141 782-942 155-304 (909)
236 KOG0782|consensus 79.3 0.77 1.7E-05 56.1 0.9 86 269-362 903-988 (1004)
237 cd02871 GH18_chitinase_D-like 78.4 7.3 0.00016 45.4 8.5 61 1035-1128 58-118 (312)
238 TIGR00217 malQ 4-alpha-glucano 77.6 5.8 0.00013 49.6 7.7 140 1036-1190 211-367 (513)
239 COG2342 Predicted extracellula 77.5 13 0.00028 43.0 9.7 128 1034-1180 61-190 (300)
240 KOG0195|consensus 77.4 2 4.3E-05 49.3 3.3 44 393-440 14-57 (448)
241 cd02742 GH20_hexosaminidase Be 76.5 9.3 0.0002 44.4 8.6 77 1035-1119 70-147 (303)
242 cd06589 GH31 The enzymes of gl 75.3 4.8 0.0001 45.7 5.7 50 1039-1131 68-117 (265)
243 KOG0506|consensus 74.9 2.2 4.8E-05 51.8 3.0 51 270-324 544-594 (622)
244 cd05816 CBM20_DPE2_repeat2 Dis 74.7 7.1 0.00015 38.0 6.0 48 75-123 2-68 (99)
245 cd02874 GH18_CFLE_spore_hydrol 74.7 14 0.0003 42.8 9.4 89 1039-1173 47-136 (313)
246 PF02446 Glyco_hydro_77: 4-alp 74.0 2.9 6.3E-05 51.9 3.9 143 1036-1193 191-344 (496)
247 PF00686 CBM_20: Starch bindin 73.7 9.4 0.0002 36.7 6.5 62 782-849 4-75 (96)
248 cd06562 GH20_HexA_HexB-like Be 73.5 22 0.00048 42.3 10.8 81 1035-1120 68-149 (348)
249 PF08429 PLU-1: PLU-1-like pro 72.2 2.1E+02 0.0044 33.7 18.8 102 482-583 80-202 (335)
250 PF00686 CBM_20: Starch bindin 72.1 7.3 0.00016 37.5 5.3 49 75-124 4-73 (96)
251 KOG0782|consensus 70.5 2.3 4.9E-05 52.3 1.7 51 308-365 904-958 (1004)
252 COG3867 Arabinogalactan endo-1 67.6 44 0.00094 39.3 10.8 114 1038-1180 105-219 (403)
253 cd00598 GH18_chitinase-like Th 67.2 37 0.00079 36.4 10.0 64 1035-1128 47-112 (210)
254 PF01120 Alpha_L_fucos: Alpha- 67.1 38 0.00082 40.3 10.9 106 1036-1181 137-243 (346)
255 cd02857 CD_pullulan_degrading_ 67.0 21 0.00046 34.8 7.5 58 780-844 16-81 (116)
256 KOG1065|consensus 67.0 12 0.00027 48.6 7.1 93 1031-1130 348-448 (805)
257 KOG3676|consensus 64.9 12 0.00026 48.5 6.4 167 410-611 140-331 (782)
258 cd05816 CBM20_DPE2_repeat2 Dis 64.1 29 0.00062 33.8 7.6 60 782-846 2-68 (99)
259 cd06547 GH85_ENGase Endo-beta- 63.5 22 0.00047 42.4 7.9 95 1041-1180 50-145 (339)
260 PF05913 DUF871: Bacterial pro 63.0 5.9 0.00013 47.4 3.2 26 1035-1060 45-70 (357)
261 PF00023 Ank: Ankyrin repeat H 61.6 5 0.00011 31.0 1.5 28 513-540 3-30 (33)
262 COG3589 Uncharacterized conser 58.9 13 0.00028 44.0 4.9 25 1036-1060 48-72 (360)
263 cd05814 CBM20_Prei4 Prei4, N-t 58.1 20 0.00043 36.2 5.5 58 781-844 2-68 (120)
264 cd06546 GH18_CTS3_chitinase GH 57.9 36 0.00079 38.8 8.2 64 1035-1128 57-120 (256)
265 smart00812 Alpha_L_fucos Alpha 56.7 81 0.0018 38.3 11.2 74 1035-1129 126-202 (384)
266 KOG0471|consensus 56.5 7.8 0.00017 48.8 2.8 52 1215-1268 454-510 (545)
267 TIGR01531 glyc_debranch glycog 55.6 20 0.00043 49.5 6.4 60 1101-1188 488-547 (1464)
268 cd06570 GH20_chitobiase-like_1 55.1 78 0.0017 37.3 10.5 78 1035-1119 66-146 (311)
269 PLN02950 4-alpha-glucanotransf 54.8 21 0.00045 47.7 6.4 91 1036-1132 460-559 (909)
270 cd06543 GH18_PF-ChiA-like PF-C 54.0 83 0.0018 36.9 10.4 60 1036-1128 53-112 (294)
271 PF14883 GHL13: Hypothetical g 52.5 2.7E+02 0.0059 32.9 13.9 127 1036-1179 62-189 (294)
272 KOG1710|consensus 51.8 38 0.00082 39.6 6.9 92 554-666 49-145 (396)
273 PF02903 Alpha-amylase_N: Alph 51.3 40 0.00086 33.8 6.4 65 778-850 19-94 (120)
274 PF08429 PLU-1: PLU-1-like pro 50.5 3.9E+02 0.0085 31.4 15.4 60 559-618 81-151 (335)
275 cd06568 GH20_SpHex_like A subg 49.7 1.2E+02 0.0026 36.0 11.0 77 1035-1118 73-152 (329)
276 cd05809 CBM20_beta_amylase Bet 49.0 60 0.0013 31.7 7.0 60 782-847 5-73 (99)
277 smart00248 ANK ankyrin repeats 48.8 7.6 0.00017 26.3 0.6 24 418-441 3-26 (30)
278 COG1640 MalQ 4-alpha-glucanotr 48.5 83 0.0018 39.8 9.7 91 1036-1132 209-308 (520)
279 cd05817 CBM20_DSP Dual-specifi 45.6 62 0.0014 31.6 6.6 56 783-844 3-64 (100)
280 cd06565 GH20_GcnA-like Glycosy 43.9 2.2E+02 0.0048 33.3 11.9 73 1035-1120 58-131 (301)
281 PRK07764 DNA polymerase III su 43.3 4.1E+02 0.0088 35.8 15.3 24 1042-1065 570-594 (824)
282 PF02449 Glyco_hydro_42: Beta- 43.1 35 0.00076 40.7 5.3 86 1037-1129 47-137 (374)
283 KOG1710|consensus 42.7 40 0.00087 39.4 5.4 71 513-587 46-120 (396)
284 KOG0511|consensus 42.7 20 0.00044 42.9 3.2 55 513-574 37-93 (516)
285 cd02877 GH18_hevamine_XipI_cla 41.3 1.6E+02 0.0034 34.4 10.0 23 1035-1057 57-79 (280)
286 smart00636 Glyco_18 Glycosyl h 41.1 65 0.0014 37.5 7.0 55 1100-1173 87-142 (334)
287 cd06563 GH20_chitobiase-like T 40.5 74 0.0016 38.0 7.5 79 1035-1119 84-164 (357)
288 PLN03236 4-alpha-glucanotransf 38.1 67 0.0014 42.2 7.0 90 1037-1132 274-372 (745)
289 cd06564 GH20_DspB_LnbB-like Gl 38.0 54 0.0012 38.6 5.8 75 1035-1120 80-155 (326)
290 cd05467 CBM20 The family 20 ca 37.8 1.1E+02 0.0023 29.1 6.7 59 783-846 3-69 (96)
291 PF00724 Oxidored_FMN: NADH:fl 37.5 1.3E+02 0.0028 35.8 8.7 129 1035-1176 78-215 (341)
292 PRK00440 rfc replication facto 37.3 4E+02 0.0087 30.4 12.6 50 567-621 168-217 (319)
293 TIGR02455 TreS_stutzeri trehal 37.3 32 0.0007 44.2 3.9 49 1215-1264 579-633 (688)
294 PTZ00445 p36-lilke protein; Pr 37.3 44 0.00095 37.7 4.5 42 141-183 24-96 (219)
295 cd05808 CBM20_alpha_amylase Al 36.6 83 0.0018 29.9 5.8 49 75-124 3-68 (95)
296 KOG3676|consensus 36.2 43 0.00094 43.6 4.8 174 522-705 156-350 (782)
297 cd02872 GH18_chitolectin_chito 36.0 68 0.0015 38.0 6.2 63 1100-1178 92-155 (362)
298 PRK12402 replication factor C 35.3 4.3E+02 0.0093 30.5 12.5 90 564-668 188-277 (337)
299 PF00728 Glyco_hydro_20: Glyco 35.1 65 0.0014 37.7 5.8 79 1035-1120 71-156 (351)
300 PF00704 Glyco_hydro_18: Glyco 34.8 73 0.0016 36.8 6.1 64 1101-1181 96-164 (343)
301 PLN03059 beta-galactosidase; P 34.7 4.3E+02 0.0094 35.5 13.3 23 1034-1056 95-117 (840)
302 KOG0511|consensus 34.2 39 0.00084 40.7 3.7 54 552-613 38-94 (516)
303 PF14701 hDGE_amylase: glucano 33.6 70 0.0015 39.4 5.8 48 1101-1176 375-422 (423)
304 KOG3609|consensus 33.6 63 0.0014 42.4 5.6 126 309-449 31-163 (822)
305 cd05813 CBM20_genethonin_1 Gen 33.3 1.5E+02 0.0033 28.4 7.1 55 782-843 3-63 (95)
306 cd02879 GH18_plant_chitinase_c 33.0 1.1E+02 0.0023 35.7 7.1 29 1100-1128 88-116 (299)
307 cd02931 ER_like_FMN Enoate red 32.6 4.1E+02 0.009 32.2 12.1 28 1036-1065 82-110 (382)
308 cd05809 CBM20_beta_amylase Bet 32.3 93 0.002 30.3 5.5 50 74-124 4-73 (99)
309 PRK12402 replication factor C 32.1 5.8E+02 0.012 29.4 12.8 42 526-572 188-229 (337)
310 cd05817 CBM20_DSP Dual-specifi 31.4 1.1E+02 0.0023 29.9 5.8 47 75-122 2-65 (100)
311 cd06549 GH18_trifunctional GH1 31.2 75 0.0016 36.9 5.4 54 1099-1173 83-137 (298)
312 PF03644 Glyco_hydro_85: Glyco 30.9 91 0.002 36.9 6.1 95 1041-1180 46-140 (311)
313 cd02876 GH18_SI-CLP Stabilin-1 30.7 72 0.0016 37.2 5.2 29 1100-1128 88-116 (318)
314 TIGR00106 uncharacterized prot 30.5 79 0.0017 31.3 4.6 34 144-177 17-61 (97)
315 cd04733 OYE_like_2_FMN Old yel 30.4 4.4E+02 0.0095 31.3 11.7 130 1035-1179 80-219 (338)
316 cd04747 OYE_like_5_FMN Old yel 30.1 5.4E+02 0.012 31.2 12.4 133 1035-1177 76-212 (361)
317 PF14871 GHL6: Hypothetical gl 28.2 57 0.0012 33.9 3.4 16 165-180 44-59 (132)
318 smart00638 LPD_N Lipoprotein N 27.9 9.4E+02 0.02 30.5 14.6 90 589-688 313-403 (574)
319 cd02803 OYE_like_FMN_family Ol 27.8 2.4E+02 0.0052 32.8 8.8 133 1035-1180 75-212 (327)
320 KOG3625|consensus 27.7 1.3E+02 0.0028 40.2 6.9 66 1095-1188 499-569 (1521)
321 PF09682 Holin_LLH: Phage holi 27.6 1.2E+02 0.0025 30.5 5.3 28 168-195 75-102 (108)
322 cd02929 TMADH_HD_FMN Trimethyl 27.4 1E+03 0.022 28.9 14.1 128 1035-1175 81-215 (370)
323 PF14488 DUF4434: Domain of un 27.4 1.1E+02 0.0023 33.0 5.4 27 1034-1060 62-88 (166)
324 cd05814 CBM20_Prei4 Prei4, N-t 27.3 1E+02 0.0023 31.1 5.0 44 75-121 3-68 (120)
325 KOG1616|consensus 26.4 1.1E+02 0.0023 36.0 5.5 65 783-860 82-148 (289)
326 PRK07764 DNA polymerase III su 26.4 4.3E+02 0.0094 35.5 11.6 27 490-516 185-211 (824)
327 cd05467 CBM20 The family 20 ca 26.2 1.7E+02 0.0037 27.7 6.0 49 75-124 2-70 (96)
328 KOG2499|consensus 25.5 3E+02 0.0065 34.7 9.1 30 1035-1064 248-278 (542)
329 PF01301 Glyco_hydro_35: Glyco 25.5 79 0.0017 37.4 4.3 24 1036-1059 62-85 (319)
330 PF01910 DUF77: Domain of unkn 25.4 66 0.0014 31.5 3.1 35 144-178 15-60 (92)
331 cd06569 GH20_Sm-chitobiase-lik 24.9 1.6E+02 0.0035 36.5 7.0 84 1035-1118 95-192 (445)
332 PF02777 Sod_Fe_C: Iron/mangan 24.8 92 0.002 30.8 4.0 50 43-94 6-56 (106)
333 cd02932 OYE_YqiM_FMN Old yello 24.7 1.1E+03 0.024 27.8 13.7 137 1035-1179 75-224 (336)
334 PRK10605 N-ethylmaleimide redu 24.5 8.2E+02 0.018 29.6 12.6 29 1035-1065 77-105 (362)
335 COG4724 Endo-beta-N-acetylgluc 24.2 2.2E+02 0.0047 34.9 7.4 61 1041-1128 131-195 (553)
336 TIGR03356 BGL beta-galactosida 23.4 2.8E+02 0.0061 34.1 8.6 58 1036-1120 93-150 (427)
337 PF01522 Polysacc_deac_1: Poly 22.4 71 0.0015 31.1 2.7 48 162-217 15-62 (123)
338 cd05811 CBM20_glucoamylase Glu 22.3 2E+02 0.0044 28.1 5.9 49 75-124 9-78 (106)
339 KOG2983|consensus 22.3 1.2E+02 0.0026 35.2 4.7 77 46-131 205-294 (334)
340 COG2730 BglC Endoglucanase [Ca 22.2 1.1E+02 0.0025 37.2 4.9 21 1037-1057 116-136 (407)
341 PF14587 Glyco_hydr_30_2: O-Gl 22.2 6E+02 0.013 31.3 10.7 119 1039-1183 106-227 (384)
342 PF02638 DUF187: Glycosyl hydr 22.0 96 0.0021 36.6 4.1 13 148-160 21-33 (311)
343 KOG2505|consensus 21.9 53 0.0011 40.9 2.0 56 392-448 404-460 (591)
344 PF11958 DUF3472: Domain of un 21.9 1.2E+02 0.0025 33.3 4.5 73 64-140 1-97 (184)
345 COG0605 SodA Superoxide dismut 21.2 1.4E+02 0.0029 33.6 4.8 50 43-94 99-148 (204)
346 PF03979 Sigma70_r1_1: Sigma-7 20.9 1.4E+02 0.0031 28.3 4.3 37 144-180 5-54 (82)
347 PRK14962 DNA polymerase III su 20.4 9.2E+02 0.02 30.3 12.2 83 667-750 249-331 (472)
348 PRK13762 tRNA-modifying enzyme 20.4 2E+02 0.0044 34.1 6.3 70 110-180 41-160 (322)
349 PRK13523 NADPH dehydrogenase N 20.2 8.9E+02 0.019 29.0 11.6 123 1036-1174 80-206 (337)
No 1
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=100.00 E-value=2.9e-77 Score=728.96 Aligned_cols=448 Identities=49% Similarity=0.871 Sum_probs=402.2
Q ss_pred cccChhhhhhhHhhccccCCCCCcccCeeecCceEEEEEccCCcEEEEEccCCCCccccccceecCCCeEEEEcCCCCCC
Q psy9003 749 LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLLCFMHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDG 828 (1276)
Q Consensus 749 ~~~~~e~l~~F~~~Y~~~G~~Gtp~G~~y~~D~a~FalwAP~A~~VsLvGDFN~wd~~~~pM~r~~~GVWsl~Ip~~~~G 828 (1276)
+.....+|++|+.+|+++|++.++ +++.|++|||+|++|+|+||||+|++..++|++.+.|+|+++||+ .+|
T Consensus 90 i~~~~~~l~~f~~~y~~lGa~~~~-------~g~~FrvWAP~A~~V~LvGdFN~W~~~~~~M~~~~~GvWe~~ip~-~~g 161 (758)
T PLN02447 90 IEKNEGGLEAFSRGYEKFGFNRSE-------GGITYREWAPGAKAAALIGDFNNWNPNAHWMTKNEFGVWEIFLPD-ADG 161 (758)
T ss_pred HhhcCCCHHHHHHHHHhceeEEec-------CCEEEEEECCCCCEEEEEEecCCCCCCccCceeCCCCEEEEEECC-ccc
Confidence 334556799999999998887665 467899999999999999999999988899999889999999999 788
Q ss_pred CcccCcccEEEEEEEEeCCeeeeecCCcceEeecCCCC-CccccceeeCCCCCCCCCcCCCCCCCCCCceEEEEecCCcc
Q psy9003 829 SCKLTHLSQVKLVVRNQHGHLLDRLSPWATYVTEPPVV-GHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICT 907 (1276)
Q Consensus 829 ~~~i~hGs~YkYrV~~~dG~~~~~~DPYAkav~~~~~~-s~v~~~~~~~p~~~~~y~W~~~rp~~~~d~vIYElHVr~ft 907 (1276)
.+++++|+.|+|+|+..+|.+..++||||+++..++.. +.++++.+|+|+..+.|.|++.+|+.+.+++|||+||+.|+
T Consensus 162 ~~~~~~G~~Yky~i~~~~g~~~~r~dpya~~~~~~p~~~~~~~~svv~dp~~~~~y~w~~~~~~~~~~~~IYE~Hvg~~~ 241 (758)
T PLN02447 162 SPAIPHGSRVKIRMETPDGRWVDRIPAWIKYAVQAPGEIGAPYNGVYWDPPEEEKYVFKHPRPPRPAALRIYEAHVGMSS 241 (758)
T ss_pred cccCCCCCEEEEEEEeCCCcEEeecCchHheeeccCCccCCCCceEEeCCCCCCCCCCCCCCCCCCCCCEEEEEeCCccc
Confidence 88999999999999988898889999999998887642 45677889998755579999888777788999999999999
Q ss_pred ccCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCcccccc
Q psy9003 908 QEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFW 987 (1276)
Q Consensus 908 ~~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf 987 (1276)
+++..|+|+++++++|||||+||||+ |||| |++++ +..+ +|||++.+||
T Consensus 242 ~~~~~gty~~~~~~~L~ylk~LG~t~----I~Lm--------------------Pi~e~--~~~~-----~wGY~~~~~f 290 (758)
T PLN02447 242 EEPKVNSYREFADDVLPRIKALGYNA----VQLM--------------------AIQEH--AYYG-----SFGYHVTNFF 290 (758)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCE----EEEC--------------------Ccccc--CCCC-----CCCcCcccCc
Confidence 88889999999988899999999999 9999 44444 3333 4999999999
Q ss_pred ccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCccc
Q psy9003 988 LMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVL 1067 (1276)
Q Consensus 988 ~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~ 1067 (1276)
+|+ ++||+++|||+||++||++||+||||+|+||++.+..
T Consensus 291 ---------------------a~~-------------------~~~Gtp~dlk~LVd~aH~~GI~VilDvV~nH~~~~~~ 330 (758)
T PLN02447 291 ---------------------AVS-------------------SRSGTPEDLKYLIDKAHSLGLRVLMDVVHSHASKNTL 330 (758)
T ss_pred ---------------------ccc-------------------cccCCHHHHHHHHHHHHHCCCEEEEEecccccccccc
Confidence 666 8899999999999999999999999999999998876
Q ss_pred CCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCC
Q psy9003 1068 DGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHY 1147 (1276)
Q Consensus 1068 ~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~ 1147 (1276)
.++..|++..+.||+.++.+.+..|+...+|+++++||+||+++++||++||||||||||++.+|.|.++|.+.+|++++
T Consensus 331 ~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~ 410 (758)
T PLN02447 331 DGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNY 410 (758)
T ss_pred ccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhCcccccccchhhhhccccCcccccccCc
Confidence 67788998887888877777778898889999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCCCccccccCCcccCcccC-CC------------------
Q psy9003 1148 DEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLV-SL------------------ 1208 (1276)
Q Consensus 1148 ~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~~~~p~~~gglGFD~~~n-~l------------------ 1208 (1276)
.++||.+.|.+++.||+++++.|++.+|++++|||+++++|.+|+|+..||+||||+|+ .+
T Consensus 411 ~~~~g~~~d~~a~~fL~~~N~~i~~~~p~~~~IAEd~s~~p~l~~p~~~GGlGFDykw~Mg~~~~~l~~l~~~~d~~~~~ 490 (758)
T PLN02447 411 NEYFGMATDVDAVVYLMLANDLLHGLYPEAVTIAEDVSGMPTLCRPVQEGGVGFDYRLAMAIPDKWIELLKEKRDEDWSM 490 (758)
T ss_pred ccccCCccChHHHHHHHHHHHHHHHhCCCeEEEEEcCCCCCCccccCCCCcCCcceEECCccchHHHHHHhhCCCcccCH
Confidence 99999999999999999999999999999999999999999999999999999999988 33
Q ss_pred -------------c------cc--------------------------------------h------h------------
Q psy9003 1209 -------------E------GS--------------------------------------A------L------------ 1213 (1276)
Q Consensus 1209 -------------E------es--------------------------------------a------L------------ 1213 (1276)
| +| + +
T Consensus 491 ~~l~~sl~~r~~~E~~I~y~eSHDevv~Gkksl~~~l~d~~my~~m~~~~~~~~~~~R~~~lhkmirl~~~~~pG~g~L~ 570 (758)
T PLN02447 491 GDIVHTLTNRRYTEKCVAYAESHDQALVGDKTIAFWLMDKEMYDGMSTLTPATPVVDRGIALHKMIRLITMALGGEGYLN 570 (758)
T ss_pred HHHHHHHhcccccCceEeccCCcCeeecCcchhHhhhcchhhhhcCCCChhhhhhHHHHHHHHHHHHHHHHhCCCCccee
Confidence 0 00 0 0
Q ss_pred ---------------------h---------------------HHHHHHHHHHHHHhcccCCCCCeeEeecCCCeEEEEE
Q psy9003 1214 ---------------------S---------------------ALFDAAMNTTEERFKWLSADPGYVSTKHEGDKVIIFE 1251 (1276)
Q Consensus 1214 ---------------------S---------------------~~F~~~Ln~l~~~~p~L~~~~~~~l~nHD~~RVlsf~ 1251 (1276)
| .+|+++||+++++.|+|.++..|+...|..++|++|+
T Consensus 571 FMGnEFg~~ew~Dfpr~~n~ws~~~~~~~W~L~d~~~l~~~~l~~f~~~L~~l~~~~~~L~~~~~~i~~~d~~~~Viaf~ 650 (758)
T PLN02447 571 FMGNEFGHPEWIDFPREGNGWSYDKCRRRWDLADADHLRYKFLNAFDRAMMHLDEKYGFLTSEHQYVSRKDEGDKVIVFE 650 (758)
T ss_pred ecccccCCchhccCcccccccCcccccCCccccCCCchhhhHHHHHHHHHHHHHhcCccccCCCceeeeecCCCCEEEEE
Confidence 0 4489999999999999998888999999999999999
Q ss_pred cCcEEEEEeCCCCCCccccccccC
Q psy9003 1252 RAGLLFAFNFNGTQSFTDYRGKSN 1275 (1276)
Q Consensus 1252 R~~ll~v~N~~~~~s~~~y~~~~~ 1275 (1276)
|++++|||||+|++|+++|+||||
T Consensus 651 R~~ll~V~NF~p~~s~~~Y~igvp 674 (758)
T PLN02447 651 RGDLVFVFNFHPTNSYSDYRVGCD 674 (758)
T ss_pred eCCeEEEEeCCCCCCCCCcEECCC
Confidence 999999999999999999999997
No 2
>PRK12568 glycogen branching enzyme; Provisional
Probab=100.00 E-value=2.4e-66 Score=632.20 Aligned_cols=421 Identities=26% Similarity=0.453 Sum_probs=344.3
Q ss_pred hhccccCCCCCcccCeeecCceEEEEEccCCcEEEEEccCCCCccccccceecCCCeEEEEcCCCCCCCcccCcccEEEE
Q psy9003 761 DECHKAGLFGTPEQLKYLVDECHKAGLLCFMHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKL 840 (1276)
Q Consensus 761 ~~Y~~~G~~Gtp~G~~y~~D~a~FalwAP~A~~VsLvGDFN~wd~~~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkY 840 (1276)
..|+.+|++-...+ .+++++|+||||+|++|+|+||||+|++..+||.+...|+|+++||+...| ..|+|
T Consensus 122 ~~y~~lGah~~~~~---g~~Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~~~GVWelfipg~~~G-------~~YKY 191 (730)
T PRK12568 122 ALRRALGAQHVQVG---EVPGVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQRIGGFWELFLPRVEAG-------ARYKY 191 (730)
T ss_pred hhHHhcCCeEeeEC---CCCcEEEEEECCCCCEEEEEEecCCCCccceecccCCCCEEEEEECCCCCC-------CEEEE
Confidence 34777888765332 257899999999999999999999999999999888899999999988765 69999
Q ss_pred EEEEeCCeeeeecCCcceEeecCCCC-CccccceeeCCCCCCCCCcC-----CCCCC--CCCCceEEEEecCCccc--cC
Q psy9003 841 VVRNQHGHLLDRLSPWATYVTEPPVV-GHAYEQRIWNPKPQDKHKWT-----SSKPK--KPDNLKIYESHVGICTQ--EQ 910 (1276)
Q Consensus 841 rV~~~dG~~~~~~DPYAkav~~~~~~-s~v~~~~~~~p~~~~~y~W~-----~~rp~--~~~d~vIYElHVr~ft~--~~ 910 (1276)
+|...+|.+..++||||++++.++.. +++.+ +. .|+|. ..+++ .+++++|||+|+|+|+. .+
T Consensus 192 eI~~~~G~~~~k~DPYA~~~e~~p~~asvV~~-----~~---~~~W~d~~W~~~r~~~~~~~~~~IYEvHvgsf~~~~~~ 263 (730)
T PRK12568 192 AITAADGRVLLKADPVARQTELPPATASVVPS-----AA---AFAWTDAAWMARRDPAAVPAPLSIYEVHAASWRRDGHN 263 (730)
T ss_pred EEEcCCCeEeecCCCcceEeecCCCCCeEEcC-----CC---CCCCCChhhhhcccccCCCCCcEEEEEEhHHhcCCCCC
Confidence 99988899888999999999887643 33322 11 24454 33332 45799999999999986 34
Q ss_pred ccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCccccccccc
Q psy9003 911 KCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMD 990 (1276)
Q Consensus 911 ~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d 990 (1276)
.+++|.++++++|||||+||||+ ||||| ++++ +.. .+|||+|.+||
T Consensus 264 ~~~~~~~la~~ll~ylk~LGvt~----I~LmP--------------------i~e~--~~~-----~~wGY~~~~~~--- 309 (730)
T PRK12568 264 QPLDWPTLAEQLIPYVQQLGFTH----IELLP--------------------ITEH--PFG-----GSWGYQPLGLY--- 309 (730)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCE----EEECc--------------------cccC--CCC-----CCCCCCCCcCC---
Confidence 57899999998889999999999 99994 4443 322 35999999999
Q ss_pred cccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCC
Q psy9003 991 KEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL 1070 (1276)
Q Consensus 991 ~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~ 1070 (1276)
+|+ ++||+++|||+||++||++||+||||+|+||++.+. .++
T Consensus 310 ------------------a~~-------------------~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~d~-~~l 351 (730)
T PRK12568 310 ------------------APT-------------------ARHGSPDGFAQFVDACHRAGIGVILDWVSAHFPDDA-HGL 351 (730)
T ss_pred ------------------ccC-------------------cccCCHHHHHHHHHHHHHCCCEEEEEeccccCCccc-ccc
Confidence 666 899999999999999999999999999999999863 355
Q ss_pred cCCCCCCCcccccC-CCCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCC-CCCCCc
Q psy9003 1071 NEFDGTQACFFHDG-PRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEG-FSGHYD 1148 (1276)
Q Consensus 1071 ~~f~g~~~~Yy~~~-~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~-~~~~~~ 1148 (1276)
..|++.. .|.+.+ ..+.+.+|++..||+.+|+||++|+++++||+++|||||||||++..|.+.++++.++ |. +
T Consensus 352 ~~fdg~~-~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~---p 427 (730)
T PRK12568 352 AQFDGAA-LYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYHLDGLRVDAVASMLYRDYGRAEGEWV---P 427 (730)
T ss_pred ccCCCcc-ccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhCceEEEEcCHhHhhhhcccccccccc---c
Confidence 6777753 333333 3466889988889999999999999999999999999999999999998888766543 43 2
Q ss_pred cccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCCCccccccCCcccCcccC-CC-------------------
Q psy9003 1149 EYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLV-SL------------------- 1208 (1276)
Q Consensus 1149 ~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~~~~p~~~gglGFD~~~n-~l------------------- 1208 (1276)
+.+|++.+.+++.||+++++.+++.+|++++|||+++.+|.+++|...||+|||++|| .+
T Consensus 428 n~~gg~en~ea~~Fl~~ln~~v~~~~P~~~~IAEest~~p~vt~p~~~gGlGFd~kwn~gwm~d~l~y~~~dp~~r~~~h 507 (730)
T PRK12568 428 NAHGGRENLEAVAFLRQLNREIASQFPGVLTIAEESTAWPGVTAPISDGGLGFTHKWNMGWMHDTLHYMQRDPAERAHHH 507 (730)
T ss_pred cccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCccccccccCCCCCcCcEeCChhHHHHHHHHhhCchhhhhhh
Confidence 4467788889999999999999999999999999999999999999999999999999 43
Q ss_pred ------------c---------c------c-----------------hh-------------------------h-----
Q psy9003 1209 ------------E---------G------S-----------------AL-------------------------S----- 1214 (1276)
Q Consensus 1209 ------------E---------e------s-----------------aL-------------------------S----- 1214 (1276)
| | + ++ +
T Consensus 508 ~~ltf~~~y~~~e~fvlp~SHDEvvhgk~sl~~kmpGd~~~k~a~lR~~~~~~~~~PGkkLlFmG~Efgq~~ew~~~~~l 587 (730)
T PRK12568 508 SQLTFGLVYAFSERFVLPLSHDEVVHGTGGLLGQMPGDDWRRFANLRAYLALMWAHPGDKLLFMGAEFGQWADWNHDQSL 587 (730)
T ss_pred hhhhhhhhhhhhccEeccCCCcccccCchhhhhcCCCCHHHHHHHHHHHHHHHHhCCCcceeeCchhhCCcccccCCCCc
Confidence 0 0 0 00 0
Q ss_pred -------------HHHHHHHHHHHHHhcccCCC------CCeeEeecCCCeEEEEEcC------c-EEEEEeCCCCCCcc
Q psy9003 1215 -------------ALFDAAMNTTEERFKWLSAD------PGYVSTKHEGDKVIIFERA------G-LLFAFNFNGTQSFT 1268 (1276)
Q Consensus 1215 -------------~~F~~~Ln~l~~~~p~L~~~------~~~~l~nHD~~RVlsf~R~------~-ll~v~N~~~~~s~~ 1268 (1276)
.+|.+.||+++++.|+|... ..|+..+.....|++|.|. + ++||+||+|. .++
T Consensus 588 dW~ll~~~~h~~~~~~~~dLn~ly~~~paL~~~d~~~~gf~wi~~~d~~~sv~af~R~~~~~~~~~v~vV~Nft~~-~~~ 666 (730)
T PRK12568 588 DWHLLDGARHRGMQQLVGDLNAALRRTPALYRGTHRADGFDWSVADDARNSVLAFIRHDPDGGGVPLLAVSNLTPQ-PHH 666 (730)
T ss_pred cccccCChhHHHHHHHHHHHHHHHHhChhhhcccCCCCCeEEEeCCCCCCcEEEEEEecCCCCCCeEEEEECCCCC-Ccc
Confidence 66999999999999998543 2355555556679999993 2 9999999998 799
Q ss_pred ccccccCC
Q psy9003 1269 DYRGKSNC 1276 (1276)
Q Consensus 1269 ~y~~~~~~ 1276 (1276)
+|+||+|+
T Consensus 667 ~Y~ig~p~ 674 (730)
T PRK12568 667 DYRVGVPR 674 (730)
T ss_pred CeEECCCC
Confidence 99999985
No 3
>PRK14706 glycogen branching enzyme; Provisional
Probab=100.00 E-value=4.4e-65 Score=620.77 Aligned_cols=420 Identities=26% Similarity=0.441 Sum_probs=345.0
Q ss_pred hhccccCCCCCcccCeeecCceEEEEEccCCcEEEEEccCCCCccccccceecCCCeEEEEcCCCCCCCcccCcccEEEE
Q psy9003 761 DECHKAGLFGTPEQLKYLVDECHKAGLLCFMHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKL 840 (1276)
Q Consensus 761 ~~Y~~~G~~Gtp~G~~y~~D~a~FalwAP~A~~VsLvGDFN~wd~~~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkY 840 (1276)
..|+.+|++..+.+ .+++++|++|||+|++|+|+||||+|++..+||.+.+.|+|++++|+... |..|+|
T Consensus 22 ~~~~~lGah~~~~~---~~~Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~~~GvW~~~vpg~~~-------g~~Yky 91 (639)
T PRK14706 22 RPDHLLGAHPATEG---GVEGVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRLDFGFWGAFVPGARP-------GQRYKF 91 (639)
T ss_pred chhHhcCccCccCC---CcccEEEEEECCCCCEEEEEEecCCcccccccccccCCCEEEEEECCCCC-------CCEEEE
Confidence 34778888876553 24578999999999999999999999988899998888999999998755 469999
Q ss_pred EEEEeCCeeeeecCCcceEeecCCCCCccccceeeCCCCCCCCCcCCCC------CCCCCCceEEEEecCCccc--cCcc
Q psy9003 841 VVRNQHGHLLDRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSK------PKKPDNLKIYESHVGICTQ--EQKC 912 (1276)
Q Consensus 841 rV~~~dG~~~~~~DPYAkav~~~~~~s~v~~~~~~~p~~~~~y~W~~~r------p~~~~d~vIYElHVr~ft~--~~~~ 912 (1276)
+|++.+|.++.++||||+++..++..+ +.++++ .|+|.+.. |+.+++++|||+|||+|+. ++..
T Consensus 92 ~I~~~~g~~~~~~DPYa~~~~~~~~~~----svv~~~----~~~w~d~~w~~~~~~~~~~~~~IYE~Hvg~f~~~~~g~~ 163 (639)
T PRK14706 92 RVTGAAGQTVDKMDPYGSFFEVRPNTA----SIIWED----RFEWTDTRWMSSRTAGFDQPISIYEVHVGSWARRDDGWF 163 (639)
T ss_pred EEECCCCCEEeccCcceEEEecCCCCc----eEECCC----CCCCCCcccccccCCccCCCcEEEEEehhhcccCCCCCc
Confidence 999878888899999999998765432 223333 36676542 2234579999999999985 3456
Q ss_pred CcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCccccccccccc
Q psy9003 913 ASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKE 992 (1276)
Q Consensus 913 Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~ 992 (1276)
|+|+++++++++|||+||||+ |||| |+.|+ +.. .+|||++.+||
T Consensus 164 ~ty~~~~~~l~~ylk~lG~t~----velm--------------------Pv~e~--~~~-----~~wGY~~~~~~----- 207 (639)
T PRK14706 164 LNYRELAHRLGEYVTYMGYTH----VELL--------------------GVMEH--PFD-----GSWGYQVTGYY----- 207 (639)
T ss_pred cCHHHHHHHHHHHHHHcCCCE----EEcc--------------------chhcC--CCC-----CCCCcCccccc-----
Confidence 899999998679999999999 9999 44444 333 35999999999
Q ss_pred cccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcC
Q psy9003 993 MYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNE 1072 (1276)
Q Consensus 993 ~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~ 1072 (1276)
+|+ ++||+++|||+||++||++||+||||+|+||++.+. .++..
T Consensus 208 ----------------~~~-------------------~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~-~~l~~ 251 (639)
T PRK14706 208 ----------------APT-------------------SRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDE-SGLAH 251 (639)
T ss_pred ----------------ccc-------------------cccCCHHHHHHHHHHHHHCCCEEEEEecccccCcch-hhhhc
Confidence 666 889999999999999999999999999999999863 45566
Q ss_pred CCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccC
Q psy9003 1073 FDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 1152 (1276)
Q Consensus 1073 f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~ 1152 (1276)
|+|..-++|.....+.+.+|++..||+.+|+||++|+++++||++||||||||||++..|.+.|++.++ | .++.+|
T Consensus 252 ~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~-~---~~~~~g 327 (639)
T PRK14706 252 FDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFHVDGLRVDAVASMLYLDFSRTE-W---VPNIHG 327 (639)
T ss_pred cCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeehheeecccCccc-c---cccccC
Confidence 777544445544456778999888999999999999999999999999999999999999888877653 4 356788
Q ss_pred CCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCCCccccccCCcccCcccC-CC-----------------------
Q psy9003 1153 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLV-SL----------------------- 1208 (1276)
Q Consensus 1153 ~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~~~~p~~~gglGFD~~~n-~l----------------------- 1208 (1276)
++.+.+++.||+++++.+++.+|++++|||+|+.+|.+++|+.. |+|||++|+ .+
T Consensus 328 g~~n~~a~~fl~~ln~~v~~~~p~~~~iAE~~~~~~~v~~~~~~-G~gFD~~w~~~w~~~~l~~~~~~~~~r~~~~~~lt 406 (639)
T PRK14706 328 GRENLEAIAFLKRLNEVTHHMAPGCMMIAEESTSFPGVTVPTPY-GLGFDYKWAMGWMNDTLAYFEQDPLWRKYHHHKLT 406 (639)
T ss_pred CcccHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCcCcccccCC-CCccccEeccHHHHHHHHHhccCchhhhhchhccc
Confidence 89999999999999999999999999999999999999999875 999999987 22
Q ss_pred --------c---------c------c--------------------hh--h-----------------------------
Q psy9003 1209 --------E---------G------S--------------------AL--S----------------------------- 1214 (1276)
Q Consensus 1209 --------E---------e------s--------------------aL--S----------------------------- 1214 (1276)
+ + + ++ +
T Consensus 407 ~~~~y~~~e~~il~~SHDev~~~k~sl~~k~~g~~~~~~a~~r~~~~~~~t~PG~pLiFmG~EfG~~~ew~~~~~l~W~l 486 (639)
T PRK14706 407 FFNVYRTSENYVLAISHDEVVHLKKSMVMKMPGDWYTQRAQYRAFLAMMWTTPGKKLLFMGQEFAQGTEWNHDASLPWYL 486 (639)
T ss_pred hhhhhhccccEecCCCCccccCCccchHhHcCCCHHHHHHHHHHHHHHHHhCCCCcEEEeccccCCCCCCCcccCCCCcc
Confidence 0 0 0 00 0
Q ss_pred ---------HHHHHHHHHHHHHhcccCCC------CCeeEeecCCCeEEEEEcCc------EEEEEeCCCCCCccccccc
Q psy9003 1215 ---------ALFDAAMNTTEERFKWLSAD------PGYVSTKHEGDKVIIFERAG------LLFAFNFNGTQSFTDYRGK 1273 (1276)
Q Consensus 1215 ---------~~F~~~Ln~l~~~~p~L~~~------~~~~l~nHD~~RVlsf~R~~------ll~v~N~~~~~s~~~y~~~ 1273 (1276)
.+|.+.|++++++.|+|+.+ ..|+..++..++|++|.|.. ++||+||+| .++++|+||
T Consensus 487 ~~~~~~~~l~~~~k~L~~L~k~~paL~~gd~~~~~f~wi~~~d~~~~VlaF~R~~~~~~~~vlvV~Nfs~-~~~~~y~ig 565 (639)
T PRK14706 487 TDVPDHRGVMNLVRRLNQLYRERPDWHRGDKREEGLYWVSADDTDNSVYAYVRRDSESGAWSLAVANLTP-VYREQYRIG 565 (639)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhCHHHhhCCCCCCCeEEEEeecCCCCEEEEEEecCCCCeeEEEEEeCCC-CCcCCeEEC
Confidence 45889999999999999643 22455566677899999952 999999999 589999999
Q ss_pred cCC
Q psy9003 1274 SNC 1276 (1276)
Q Consensus 1274 ~~~ 1276 (1276)
||.
T Consensus 566 ~p~ 568 (639)
T PRK14706 566 VPQ 568 (639)
T ss_pred CCC
Confidence 983
No 4
>PRK14705 glycogen branching enzyme; Provisional
Probab=100.00 E-value=2.1e-65 Score=648.41 Aligned_cols=422 Identities=26% Similarity=0.463 Sum_probs=344.6
Q ss_pred ccccCCCCCcccCe-eecCceEEEEEccCCcEEEEEccCCCCcccccccee-cCCCeEEEEcCCCCCCCcccCcccEEEE
Q psy9003 763 CHKAGLFGTPEQLK-YLVDECHKAGLLCFMHVVCAAGDFNNWNREEFAYKK-LDFGKWELVLPPNPDGSCKLTHLSQVKL 840 (1276)
Q Consensus 763 Y~~~G~~Gtp~G~~-y~~D~a~FalwAP~A~~VsLvGDFN~wd~~~~pM~r-~~~GVWsl~Ip~~~~G~~~i~hGs~YkY 840 (1276)
|+.+|++-...... -.+++++|+||||+|++|+|+||||+|++..++|.+ ...|+|+++||+...| ..|+|
T Consensus 620 y~~lGah~~~~~~~~~~~~Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~~~~GvW~~fipg~~~G-------~~Yky 692 (1224)
T PRK14705 620 WDVLGAHVQHYKSSLGDVDGVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSLGSSGVWELFIPGVVAG-------ACYKF 692 (1224)
T ss_pred HHhcCCeEeeccCccCCCCeEEEEEECCCCCEEEEEEEecCCCCCcccceECCCCCEEEEEECCCCCC-------CEEEE
Confidence 77788876432100 025789999999999999999999999998899987 4679999999988766 59999
Q ss_pred EEEEeCCeeeeecCCcceEeecCCC-CCccccc-eeeCCCCCCCCCcCCCCC---CCCCCceEEEEecCCccccCccCcH
Q psy9003 841 VVRNQHGHLLDRLSPWATYVTEPPV-VGHAYEQ-RIWNPKPQDKHKWTSSKP---KKPDNLKIYESHVGICTQEQKCASY 915 (1276)
Q Consensus 841 rV~~~dG~~~~~~DPYAkav~~~~~-~s~v~~~-~~~~p~~~~~y~W~~~rp---~~~~d~vIYElHVr~ft~~~~~Gtf 915 (1276)
+|.+.+|.++.+.||||++...++. .|++.+. ..|.+. +|...+. +..++++|||+|+|+|+. .++|
T Consensus 693 ~i~~~~g~~~~k~DPyA~~~e~~p~~aS~V~d~~~~w~d~-----~W~~~r~~~~~~~~p~~IYEvHvgsf~~---~~~~ 764 (1224)
T PRK14705 693 EILTKAGQWVEKADPLAFGTEVPPLTASRVVEASYAFKDA-----EWMSARAERDPHNSPMSVYEVHLGSWRL---GLGY 764 (1224)
T ss_pred EEEcCCCcEEecCCccccccccCCCCCeEEeCCCCCcCCh-----hhhhccccCCCCcCCcEEEEEEeccccc---CCch
Confidence 9998889999999999999887653 3444332 122222 4544332 224789999999999986 4899
Q ss_pred HHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCcccccccccccccc
Q psy9003 916 EDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYT 995 (1276)
Q Consensus 916 ~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~ 995 (1276)
.++++++|||||+||||+ |||| |++|+ |.. .+|||++.+||
T Consensus 765 ~~l~~~lldYlk~LGvt~----IeLm--------------------Pv~e~--p~~-----~swGY~~~~y~-------- 805 (1224)
T PRK14705 765 RELAKELVDYVKWLGFTH----VEFM--------------------PVAEH--PFG-----GSWGYQVTSYF-------- 805 (1224)
T ss_pred HHHHHHHHHHHHHhCCCE----EEEC--------------------ccccC--CCC-----CCCCCCccccC--------
Confidence 999998789999999999 9999 44444 333 35999999999
Q ss_pred ccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCC
Q psy9003 996 HMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDG 1075 (1276)
Q Consensus 996 ~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g 1075 (1276)
+|+ ++||+++|||+||++||++||+||||+|+||++.+ .+++..|+|
T Consensus 806 -------------ap~-------------------~ryGt~~dfk~lVd~~H~~GI~VILD~V~nH~~~d-~~~l~~fdg 852 (1224)
T PRK14705 806 -------------APT-------------------SRFGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKD-SWALAQFDG 852 (1224)
T ss_pred -------------CcC-------------------cccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcc-hhhhhhcCC
Confidence 676 88999999999999999999999999999999877 466777887
Q ss_pred CCCcccccCC-CCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCC-CCCCCccccCC
Q psy9003 1076 TQACFFHDGP-RGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEG-FSGHYDEYFGL 1153 (1276)
Q Consensus 1076 ~~~~Yy~~~~-~g~~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~-~~~~~~~~~~~ 1153 (1276)
.. .|++.++ .+.++.|++..||+++|+||+||+++++||++||||||||||++..|.|.|+++.++ |. .+.+|+
T Consensus 853 ~~-~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w~---pn~~gg 928 (1224)
T PRK14705 853 QP-LYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFHIDGLRVDAVASMLYLDYSREEGQWR---PNRFGG 928 (1224)
T ss_pred Cc-ccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCCcEEEeehhhhhhccccccccccc---ccccCC
Confidence 63 4444443 477899999999999999999999999999999999999999999999988876554 32 467788
Q ss_pred CCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCCCccccccCCcccCcccC-CC-----c------------------
Q psy9003 1154 NVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLV-SL-----E------------------ 1209 (1276)
Q Consensus 1154 ~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~~~~p~~~gglGFD~~~n-~l-----E------------------ 1209 (1276)
+.+.+++.||+++++.+++.+|++++|||+++.+|.+++|+..||+||||+|| .+ +
T Consensus 929 ~en~~ai~fl~~ln~~v~~~~p~~~~IAEest~~p~vt~p~~~GGlGFd~kWnmgwmhd~l~Y~~~dp~~r~~~~~~ltf 1008 (1224)
T PRK14705 929 RENLEAISFLQEVNATVYKTHPGAVMIAEESTAFPGVTAPTSHGGLGFGLKWNMGWMHDSLKYASEDPINRKWHHGTITF 1008 (1224)
T ss_pred ccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCcCccccccCCCccCCcEecchhhHHHHHHhhhCcchhhcccchHHH
Confidence 99999999999999999999999999999999999999999999999999999 33 0
Q ss_pred -------cc------------------------------------hh---------------------------------
Q psy9003 1210 -------GS------------------------------------AL--------------------------------- 1213 (1276)
Q Consensus 1210 -------es------------------------------------aL--------------------------------- 1213 (1276)
|+ ++
T Consensus 1009 ~~~ya~~e~fvl~~SHDevvhgk~sl~~km~Gd~~~k~a~lR~~~a~~~~~PGk~LlFMG~Efgq~~ew~~~~~LdW~ll 1088 (1224)
T PRK14705 1009 SLVYAFTENFLLPISHDEVVHGKGSMLRKMPGDRWQQLANLRAFLAYQWAHPGKQLIFMGTEFGQEAEWSEQHGLDWFLA 1088 (1224)
T ss_pred HHHHHhhcCEecccccccccccchhHHHhCCCcHHHHHHHHHHHHHHHHhcCCcCEEECccccCCCCCccccccCCCccc
Confidence 00 00
Q ss_pred -------hHHHHHHHHHHHHHhcccCCC----CC--eeEeecCCCeEEEEEcC-----cEEEEEeCCCCCCccccccccC
Q psy9003 1214 -------SALFDAAMNTTEERFKWLSAD----PG--YVSTKHEGDKVIIFERA-----GLLFAFNFNGTQSFTDYRGKSN 1275 (1276)
Q Consensus 1214 -------S~~F~~~Ln~l~~~~p~L~~~----~~--~~l~nHD~~RVlsf~R~-----~ll~v~N~~~~~s~~~y~~~~~ 1275 (1276)
-..|.+.||+++++.|+|+.. .. |+..++..+.|++|.|. .+++|+||+|. .+++|+||||
T Consensus 1089 ~~~~h~~~~~~~rdLn~ly~~~paL~~~d~~~~gf~wi~~~d~~~~vlaf~R~~~~~~~vlvv~Nftp~-~~~~y~igvp 1167 (1224)
T PRK14705 1089 DIPAHRGIQLLTKDLNELYTSTPALYQRDNEPGGFQWINGGDADRNVLSFIRWDGDGNPLVCAINFSGG-PHKGYTLGVP 1167 (1224)
T ss_pred CChhhHHHHHHHHHHHHHHhcChhhhccCCCCCceEEeecCCCCCcEEEEEEeCCCCCEEEEEEcCCCC-CccCceECCC
Confidence 066999999999999998632 22 33334556679999993 39999999996 9999999998
Q ss_pred C
Q psy9003 1276 C 1276 (1276)
Q Consensus 1276 ~ 1276 (1276)
.
T Consensus 1168 ~ 1168 (1224)
T PRK14705 1168 A 1168 (1224)
T ss_pred C
Confidence 4
No 5
>PLN02960 alpha-amylase
Probab=100.00 E-value=1.2e-64 Score=617.77 Aligned_cols=447 Identities=39% Similarity=0.704 Sum_probs=374.0
Q ss_pred cccChhhhhhhHhhccccCCCCCcccCeeecCceEEEEEccCCcEEEEEccCCCCccccccce-----ecCCCeEEEEcC
Q psy9003 749 LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLLCFMHVVCAAGDFNNWNREEFAYK-----KLDFGKWELVLP 823 (1276)
Q Consensus 749 ~~~~~e~l~~F~~~Y~~~G~~Gtp~G~~y~~D~a~FalwAP~A~~VsLvGDFN~wd~~~~pM~-----r~~~GVWsl~Ip 823 (1276)
++.....|+.|+.+|+.+|.+-+++. ++.|+.|||.|..++|+||||+|+++.++|. |++.|+|++.++
T Consensus 103 ~~~~~~~~~~~~~~~e~~g~~~~~~~------~~~~~~wap~a~~~~~~gdfn~w~~~~~~~~~g~~~~~~~~~~~~~~~ 176 (897)
T PLN02960 103 IFKRHIDLKEFASGFELLGMHRHPEH------RVDFMEWAPGARYCSLVGDFNNWSPTENRAREGYFGHDDFGYWFIILE 176 (897)
T ss_pred HHHhhccHHHHhhHHHHhccccCccc------CeEEEEEcCCceeEEEeecccCCCcccchhhcccccccccceEEEEec
Confidence 34445578899999999999999874 5688999999999999999999999999877 578999999997
Q ss_pred C-CCCCC-------------------------------------------------------------------------
Q psy9003 824 P-NPDGS------------------------------------------------------------------------- 829 (1276)
Q Consensus 824 ~-~~~G~------------------------------------------------------------------------- 829 (1276)
. ..+|+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (897)
T PLN02960 177 DKLREGEEPDELYFQEYNYVDDYDKGDSGIDIEELFQKMNDEYWEPGEDRFIKNRLEVPAKLYEQMFGPNGPQTLEELGD 256 (897)
T ss_pred hhhhcCCCcchhhhhhhccccccccCCCCCCHHHHHHHhhhhhcCCcchhhhhccchhHHHHHHHhhCCCCCcchhhhhc
Confidence 4 22222
Q ss_pred ---------------------------------------------------------------------------cccCc
Q psy9003 830 ---------------------------------------------------------------------------CKLTH 834 (1276)
Q Consensus 830 ---------------------------------------------------------------------------~~i~h 834 (1276)
+.+.|
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~gw~~~~ip~~~h 336 (897)
T PLN02960 257 IPDAETRYKEWKKEHKDDDPSNLPPLDIIDTGQPYDIFNVVTDPVWREKFLEKKPPLPYWEETRKGRKAWLKKYIPAIPH 336 (897)
T ss_pred cCccchhhhhhhhhccCCChhhCCCeeecCCCcccccceeccCHHHHHHHhccCCCCcceeeeeecCCcEEEEEccCCCC
Confidence 01118
Q ss_pred ccEEEEEEEEeCCeeeeecCCcceEeecCCCCCccccceeeCCCCCCCCCcCCCCCCCCCCceEEEEecCCccccCccCc
Q psy9003 835 LSQVKLVVRNQHGHLLDRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCAS 914 (1276)
Q Consensus 835 Gs~YkYrV~~~dG~~~~~~DPYAkav~~~~~~s~v~~~~~~~p~~~~~y~W~~~rp~~~~d~vIYElHVr~ft~~~~~Gt 914 (1276)
|++|+|+|+..+|. ..++||||+++...+. +......+|+|...+.|+|...+|+.+.+++|||+||++|+.++..||
T Consensus 337 G~~Yky~v~~~~g~-~~~vdpyA~~~qp~~~-~~~~~~v~~d~~~~~~y~W~~~~p~~~~~~vIYElHvg~~~~e~~~gt 414 (897)
T PLN02960 337 GSKYRVYFNTPDGP-LERVPAWATYVLPDPD-GKQWYAIHWEPPPEEAYKWKFERPKVPKSLRIYECHVGISGSEPKISS 414 (897)
T ss_pred CCEEEEEEEeCCCc-eEECCCcceeEeecCC-CccceEEEeCCCCCCCCCCCCCCCCCCCCcEEEEEecccccCCCCCCC
Confidence 99999999877665 5689999998855432 211223456764335699998877777899999999999998888999
Q ss_pred HHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCccccccccccccc
Q psy9003 915 YEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMY 994 (1276)
Q Consensus 915 f~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y 994 (1276)
|.++++++|||||+||||+ |||||+ .++ +.. .+|||++.+||
T Consensus 415 f~~~~e~~LdYLk~LGvt~----IeLmPv--------------------~e~--~~~-----~swGY~~~~yf------- 456 (897)
T PLN02960 415 FKEFTQKVLPHVKKAGYNA----IQLIGV--------------------QEH--KDY-----SSVGYKVTNFF------- 456 (897)
T ss_pred HHHHHHHHHHHHHHcCCCE----EEECCc--------------------ccC--CCC-----CCCCCCcccCC-------
Confidence 9999988899999999999 999944 443 323 34999999999
Q ss_pred cccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCC
Q psy9003 995 THMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFD 1074 (1276)
Q Consensus 995 ~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~ 1074 (1276)
+|+ ++||++++||+||++||++||+||||+|+||++.++..++..|+
T Consensus 457 --------------a~~-------------------~~yGtp~dfk~LVd~aH~~GI~VILDvV~NH~~~d~~~~L~~FD 503 (897)
T PLN02960 457 --------------AVS-------------------SRFGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFD 503 (897)
T ss_pred --------------Ccc-------------------cccCCHHHHHHHHHHHHHCCCEEEEEecccccCCccccchhhcC
Confidence 666 88999999999999999999999999999999998766778899
Q ss_pred CCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCC
Q psy9003 1075 GTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLN 1154 (1276)
Q Consensus 1075 g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~ 1154 (1276)
|....||..+..+.++.|+.+.||+.+|+||+||+++++||++||||||||||++..|.|.++|. ..+.|.+..++...
T Consensus 504 G~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~EyhIDGfR~DAV~sMlY~d~g~-~~~~G~~~~~~n~~ 582 (897)
T PLN02960 504 GSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYRVDGFQFHSLGSMLYTHNGF-ASFTGDLDEYCNQY 582 (897)
T ss_pred CCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHCCCceeecccceeeeeccCc-cccCCcccccCCcc
Confidence 97767887766777889999999999999999999999999999999999999999999988764 23444444444445
Q ss_pred CCchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCCCccccccCCcccCcccC-CC-------------------------
Q psy9003 1155 VDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLV-SL------------------------- 1208 (1276)
Q Consensus 1155 ~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~~~~p~~~gglGFD~~~n-~l------------------------- 1208 (1276)
.+.+++.||+++++.+++..|++++|||+++++|.+++|...||+||||+|+ ..
T Consensus 583 ~d~~Ai~fL~~lN~~v~~~~P~vilIAEdss~~P~vt~P~~~GGLGFDYkwnmG~~~d~l~~l~~~~~r~~~~~~l~~s~ 662 (897)
T PLN02960 583 VDRDALIYLILANEMLHQLHPNIITIAEDATFYPGLCEPTSQGGLGFDYYVNLSPSEMWLSLLENVPDQEWSMSKIVSTL 662 (897)
T ss_pred CCchHHHHHHHHHHHHHhhCCCeEEEEECCCCCCCccccCCCCCCCcccccCCCcHHHHHHHHHhCcCCCCChhccEeee
Confidence 7889999999999999999999999999999999999999999999999988 32
Q ss_pred --------------c---c-----c-----------------------h---------h----h----------------
Q psy9003 1209 --------------E---G-----S-----------------------A---------L----S---------------- 1214 (1276)
Q Consensus 1209 --------------E---e-----s-----------------------a---------L----S---------------- 1214 (1276)
| + . + + +
T Consensus 663 ~~~~~~~~~~v~Y~EnHDQVv~Gkrsl~~rL~g~~~~k~~~~~~~~lRa~al~~~~rllt~~~~Pg~pLlFMG~EFGh~e 742 (897)
T PLN02960 663 VKNKENADKMLSYAENHNQSISGGKSFAEILLGKNKESSPAVKELLLRGVSLHKMIRLITFTLGGSAYLNFMGNEFGHPE 742 (897)
T ss_pred ccCcCCcceEEEEecCcCccccCcccHHHHCCCchhhhhcccChhhhhhhhHHHHHHHHHHHhCCCCCEeeCccccCChh
Confidence 0 0 0 0 0 0
Q ss_pred -------------------------------HHHHHHHHHHHHHhcccCCCCCeeEeecCCCeEEEEEcCcEEEEEeCCC
Q psy9003 1215 -------------------------------ALFDAAMNTTEERFKWLSADPGYVSTKHEGDKVIIFERAGLLFAFNFNG 1263 (1276)
Q Consensus 1215 -------------------------------~~F~~~Ln~l~~~~p~L~~~~~~~l~nHD~~RVlsf~R~~ll~v~N~~~ 1263 (1276)
.+|.+.|++++++.|+|..+..++...++.++|++|.|+.++||+||+|
T Consensus 743 ~~~~PdP~n~~tf~~s~LdW~Ll~~~~h~~l~~f~rdL~~Lr~~~paL~~g~~~i~~~d~~~~Viaf~R~~llvV~NFsp 822 (897)
T PLN02960 743 RVEFPRASNNFSFSLANRRWDLLEDGVHAHLFSFDKALMALDEKYLILSRGLPNIHHVNDTSMVISFTRGPLLFAFNFHP 822 (897)
T ss_pred hhhCcCCCCccccccccCCcccccChhHHHHHHHHHHHHHHHhcChhhcCCcceeeeecCCCCEEEEEeCCeEEEEeCCC
Confidence 3488999999999999988888888888888999999999999999999
Q ss_pred CCCccccccccC
Q psy9003 1264 TQSFTDYRGKSN 1275 (1276)
Q Consensus 1264 ~~s~~~y~~~~~ 1275 (1276)
.+++.+|+||||
T Consensus 823 ~~~~~~Y~vgvP 834 (897)
T PLN02960 823 TNSYEEYEVGVE 834 (897)
T ss_pred CCcCcCceECCC
Confidence 889999999997
No 6
>KOG0470|consensus
Probab=100.00 E-value=9.3e-63 Score=584.04 Aligned_cols=451 Identities=46% Similarity=0.745 Sum_probs=390.4
Q ss_pred hhhhhhHhhccccCCCCCcccCeeecCceEEEEEccCCcEEEEEccCCCCccccccce-ecCCCeEEEEcCCCCCCCccc
Q psy9003 754 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLLCFMHVVCAAGDFNNWNREEFAYK-KLDFGKWELVLPPNPDGSCKL 832 (1276)
Q Consensus 754 e~l~~F~~~Y~~~G~~Gtp~G~~y~~D~a~FalwAP~A~~VsLvGDFN~wd~~~~pM~-r~~~GVWsl~Ip~~~~G~~~i 832 (1276)
.+++.|..+|+.+|.+-+|+|- +.|+.|||.|..|+++||||+|+.....|. +.+.|+|++.+|...+|.+..
T Consensus 93 ~~l~~~~~~y~~~g~h~~~d~~------v~~~ewaP~a~~~s~~gd~n~W~~~~~~~~~k~~~g~w~i~l~~~~~~s~~v 166 (757)
T KOG0470|consen 93 GGLSAFSRGYEPLGTHRTPDGR------VDFTEWAPLAEAVSLIGDFNNWNPSSNELKPKDDLGVWEIDLPPKVNGSGAV 166 (757)
T ss_pred CChhhhhccccccceeccCCCc------eeeeeecccccccccccccCCCCCcccccCcccccceeEEecCcccCCCccc
Confidence 3556888889988888888872 467799999999999999999998877776 788999999999998888999
Q ss_pred CcccEEEEEEEEeCCeeeeecCCcceEeecCCCCCccccceeeCCCCCCCCCcCCCCCCCCC-CceEEEEecCCccc-cC
Q psy9003 833 THLSQVKLVVRNQHGHLLDRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPD-NLKIYESHVGICTQ-EQ 910 (1276)
Q Consensus 833 ~hGs~YkYrV~~~dG~~~~~~DPYAkav~~~~~~s~v~~~~~~~p~~~~~y~W~~~rp~~~~-d~vIYElHVr~ft~-~~ 910 (1276)
+|++.+++++.++.|++....||||+.+...+ ....+....|+|+...+|+|...+|+.|+ +++|||+|||+||. ++
T Consensus 167 ~H~s~~~~~~~~p~g~~~~~~~~~~~~~~~~~-~~~q~~~~~~~~~~e~~w~~~~~~p~~P~~sL~IYE~HVrgfS~~E~ 245 (757)
T KOG0470|consen 167 PHGSVSKIHLSTPYGETCKRIPAWATYVDQEG-EGPQYYGIYWDPSPEFDWGFKHSRPKIPESSLRIYELHVRGFSSHES 245 (757)
T ss_pred cccceeEEEeecCCcceeeccChHhhcccCCC-cccceeeccCCCCCcccccccCCCCCCChhheEEEEEeeccccCCCC
Confidence 99999999999999999999999999987765 35566677888874444555556777775 99999999999985 22
Q ss_pred c---cCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCcccccc
Q psy9003 911 K---CASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFW 987 (1276)
Q Consensus 911 ~---~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf 987 (1276)
. +|.|++++++.|||||.||+|| |||| |++|+ . +..+.|||.|++||
T Consensus 246 ~v~~~~gY~~FteKvlphlK~LG~Na----iqLm--------------------pi~Ef--~----~~~~s~GY~~~nFF 295 (757)
T KOG0470|consen 246 KVNTRGGYLGFTEKVLPHLKKLGYNA----IQLM--------------------PIFEF--G----HYYASWGYQVTNFF 295 (757)
T ss_pred ccccccchhhhhhhhhhHHHHhCccc----eEEe--------------------ehhhh--h----hhhhccCcceeEee
Confidence 2 3449999999999999999999 9999 55554 1 23446999999999
Q ss_pred ccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCccc
Q psy9003 988 LMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVL 1067 (1276)
Q Consensus 988 ~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~ 1067 (1276)
+|.++|+|++ ..+++.|||.||++||..||.|+||||+||++.+..
T Consensus 296 ---------------------apssrYgt~~-------------s~~ri~efK~lVd~aHs~GI~VlLDVV~sHaa~n~~ 341 (757)
T KOG0470|consen 296 ---------------------APSSRYGTPE-------------SPCRINEFKELVDKAHSLGIEVLLDVVHSHAAKNSK 341 (757)
T ss_pred ---------------------cccccccCCC-------------cccchHHHHHHHHHHhhCCcEEehhhhhhhcccCcC
Confidence 8887788752 246688999999999999999999999999999777
Q ss_pred CCCcCCCCCC-CcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCC
Q psy9003 1068 DGLNEFDGTQ-ACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGH 1146 (1276)
Q Consensus 1068 ~~~~~f~g~~-~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~ 1146 (1276)
++++.|+|++ ..||+.++.+.+..|+++.||+++|+|+++|+++++||++||+|||||||+++.|.|.+++.+.+|.|+
T Consensus 342 d~l~~fdGid~~~Yf~~~~r~~h~~~~~r~fn~~~~~V~rflL~nLr~WVtEY~vDGFRFD~~ssm~~~~~g~~~~f~gd 421 (757)
T KOG0470|consen 342 DGLNMFDGIDNSVYFHSGPRGYHNSWCSRLFNYNHPVVLRFLLSNLRWWVTEYHVDGFRFDLVSSMLYTHHGNAAGFDGD 421 (757)
T ss_pred CcchhccCcCCceEEEeCCcccccccccccccCCCHHHHHHHHHHHHHHHHheeccceEEcchhhhhhhccccccccCCc
Confidence 8888999999 689999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred CccccCCC---CCchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCCC-ccccccCCcccC--cccC---CC---------
Q psy9003 1147 YDEYFGLN---VDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPAS-CRPVTEGGTGFD--YRLV---SL--------- 1208 (1276)
Q Consensus 1147 ~~~~~~~~---~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~~-~~p~~~gglGFD--~~~n---~l--------- 1208 (1276)
+..++|.. .+.+++-++...++.++...|+.+.+||+.+++|.+ +.|..+|+.||| |+.+ +.
T Consensus 422 ~~~y~g~~g~~~d~~~l~~lmlAnd~~l~~~~~~It~~~D~~gm~~~~~~P~~~g~~~~d~~yr~~~~~~~k~~~~Lk~~ 501 (757)
T KOG0470|consen 422 YIEYFGTDGSFVDVDALVYLMLANDPLLGGTPGLITDAEDVSGMPGLGCFPVWQGGAGFDGLYRLAVRLFDKWIQLLKGS 501 (757)
T ss_pred chhhhccCCCcccccHHHHHHhhcchhhhcCCcceEeeeccccCCCcCCccccccccccchhhhHHhhhHHHHHHHhccC
Confidence 99999886 778899999999999999999999999999999999 999999999999 6533 11
Q ss_pred --------------------c------cc-------------------------------------------------hh
Q psy9003 1209 --------------------E------GS-------------------------------------------------AL 1213 (1276)
Q Consensus 1209 --------------------E------es-------------------------------------------------aL 1213 (1276)
+ ++ ++
T Consensus 502 ~~~~~~~gs~~~~ltN~R~~e~~v~y~~~HDq~~v~d~~T~af~~l~d~~~~~~~~~g~p~~~~idR~r~~h~~~~lit~ 581 (757)
T KOG0470|consen 502 SDAEWIMGSIDYTLTNRRYPEKSVNYAESHDQALVGDLVTIAFKWLMDETSWNCGSEGTPGTSVIDRGRALHKMIRLITL 581 (757)
T ss_pred chhheeccCcceeeeccccccceeeeeeccCCccccceeeecchhhcchhhhcccccCCCcchHHHHHHHHHHHHHHHHH
Confidence 0 00 00
Q ss_pred ------------------------------h-----------------------HHHHHHHHHHHHHhcccCCCCCeeEe
Q psy9003 1214 ------------------------------S-----------------------ALFDAAMNTTEERFKWLSADPGYVST 1240 (1276)
Q Consensus 1214 ------------------------------S-----------------------~~F~~~Ln~l~~~~p~L~~~~~~~l~ 1240 (1276)
| .+|++.++.+..+.-++.....++..
T Consensus 582 ~lg~g~pl~fmGdEfGh~e~~d~~~~~nn~s~~~~r~~~f~~~~~~~~r~~~~l~~F~~~~~~L~~~~~~~~~~~~~~~~ 661 (757)
T KOG0470|consen 582 GLGGGAPLNFMGDEFGHPEWLDFPRYGNNFSYNYARRKRFDLADSDLLRYRRQLNSFDREMNLLEERNGFTTSELQYISL 661 (757)
T ss_pred hccCccceeccccccCCccccCCCcccCCccccccCccccccccchhhhhhhhhhhhhhHHHHHHHhccccccccccccc
Confidence 0 67888899888888888777778899
Q ss_pred ecCCCeEEEEEcCcEEEEEeCCCCCCccccccccC
Q psy9003 1241 KHEGDKVIIFERAGLLFAFNFNGTQSFTDYRGKSN 1275 (1276)
Q Consensus 1241 nHD~~RVlsf~R~~ll~v~N~~~~~s~~~y~~~~~ 1275 (1276)
.|+.+++++|+|+.++|||||.+++|+.+|+||++
T Consensus 662 k~e~~~~i~fer~~~~~vfn~h~~~s~~d~~vg~n 696 (757)
T KOG0470|consen 662 KHEADEVIVFERGPLLFVFNFHDSNSYIDYRVGFN 696 (757)
T ss_pred cchhhheeeeccCCeEEEEEecCCCCCceeEEEec
Confidence 99999999999999999999999999999999986
No 7
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=100.00 E-value=1.3e-60 Score=582.04 Aligned_cols=421 Identities=29% Similarity=0.492 Sum_probs=332.2
Q ss_pred hhccccCCCCCcccCeeecCceEEEEEccCCcEEEEEccCCCCccccccceecC-CCeEEEEcCCCCCCCcccCcccEEE
Q psy9003 761 DECHKAGLFGTPEQLKYLVDECHKAGLLCFMHVVCAAGDFNNWNREEFAYKKLD-FGKWELVLPPNPDGSCKLTHLSQVK 839 (1276)
Q Consensus 761 ~~Y~~~G~~Gtp~G~~y~~D~a~FalwAP~A~~VsLvGDFN~wd~~~~pM~r~~-~GVWsl~Ip~~~~G~~~i~hGs~Yk 839 (1276)
+.|+.+|.+.++.+ .+++++|++|||+|++|+|++|||+|+....+|.+.. .|+|++.+|+...| ..|+
T Consensus 12 ~~~~~LGah~~~~~---~~~g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~~~~Gvw~~~i~~~~~g-------~~Y~ 81 (613)
T TIGR01515 12 RSYELLGSHYMELD---GVSGTRFCVWAPNAREVRVAGDFNYWDGREHPMRRRNDNGIWELFIPGIGEG-------ELYK 81 (613)
T ss_pred ChHHhcCceEeccC---CcCcEEEEEECCCCCEEEEEEecCCCCCceecceEecCCCEEEEEeCCCCCC-------CEEE
Confidence 44667777766422 1267899999999999999999999988888998764 89999999976554 6999
Q ss_pred EEEEEeCCeeeeecCCcceEeecCCC-CCcccc--ceeeCCCCCCCCCcCCCCCC---CCCCceEEEEecCCccccCccC
Q psy9003 840 LVVRNQHGHLLDRLSPWATYVTEPPV-VGHAYE--QRIWNPKPQDKHKWTSSKPK---KPDNLKIYESHVGICTQEQKCA 913 (1276)
Q Consensus 840 YrV~~~dG~~~~~~DPYAkav~~~~~-~s~v~~--~~~~~p~~~~~y~W~~~rp~---~~~d~vIYElHVr~ft~~~~~G 913 (1276)
|+|...+|....+.||||+++..++. .|++++ ...|+|. .|...+++ ..++++|||+|||+|++. |
T Consensus 82 y~v~~~~g~~~~~~DPYA~~~~~~~~~~s~v~d~~~~~w~~~-----~w~~~~~~~~~~~~~~~iYe~hv~~~~~~---g 153 (613)
T TIGR01515 82 YEIVTNNGEIRLKADPYAFYAEVRPNTASLVYDLEGYSWQDQ-----KWQEKRKAKTPYEKPVSIYELHLGSWRHG---L 153 (613)
T ss_pred EEEECCCCcEEEeCCCCEeeeccCCCCcEEEECCccCccCch-----hhhhcccccCcccCCceEEEEehhhccCC---C
Confidence 99987778877899999999887653 333333 1223332 56555432 235799999999999864 9
Q ss_pred cHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCcccccccccccc
Q psy9003 914 SYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEM 993 (1276)
Q Consensus 914 tf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~ 993 (1276)
+|+++++++|||||+||||+ |||||++ ++ + ...+|||++.+||
T Consensus 154 ~~~~i~~~l~dyl~~LGvt~----i~L~Pi~--------------------e~--~-----~~~~wGY~~~~y~------ 196 (613)
T TIGR01515 154 SYRELADQLIPYVKELGFTH----IELLPVA--------------------EH--P-----FDGSWGYQVTGYY------ 196 (613)
T ss_pred CHHHHHHHHHHHHHHcCCCE----EEECCcc--------------------cC--C-----CCCCCCCCcccCc------
Confidence 99999998669999999999 9999544 33 2 1246999999999
Q ss_pred ccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCC
Q psy9003 994 YTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF 1073 (1276)
Q Consensus 994 y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f 1073 (1276)
+|+ ++||+++|||+||++||++||+||||+|+||++.+.. .+..|
T Consensus 197 ---------------~~~-------------------~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~~-~~~~~ 241 (613)
T TIGR01515 197 ---------------APT-------------------SRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKDDH-GLAEF 241 (613)
T ss_pred ---------------ccc-------------------cccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCccc-hhhcc
Confidence 666 8899999999999999999999999999999998742 33455
Q ss_pred CCCCCcccccC-CCCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCC-CCCCCcccc
Q psy9003 1074 DGTQACFFHDG-PRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEG-FSGHYDEYF 1151 (1276)
Q Consensus 1074 ~g~~~~Yy~~~-~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~-~~~~~~~~~ 1151 (1276)
++. +.|+..+ ..+.++.|+.++||+++|+||++|+++++||++||||||||||++..|.+.+++..++ |. .+.+
T Consensus 242 ~~~-~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~---~~~~ 317 (613)
T TIGR01515 242 DGT-PLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAVASMLYLDYSRDEGEWS---PNED 317 (613)
T ss_pred CCC-cceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCHHHhhhhcccccccccc---cccc
Confidence 554 3344333 3455678998999999999999999999999999999999999998888777665543 32 1344
Q ss_pred CCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCCCccccccCCcccCcccC-CC----------------------
Q psy9003 1152 GLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLV-SL---------------------- 1208 (1276)
Q Consensus 1152 ~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~~~~p~~~gglGFD~~~n-~l---------------------- 1208 (1276)
+++.+.+++.||+++++.||+.+|++++|||+++.+|.++.|...||+|||++|+ .+
T Consensus 318 ~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~~~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (613)
T TIGR01515 318 GGRENLEAVDFLRKLNQTVYEAFPGVVTIAEESTEWPGVTRPTDEGGLGFHYKWNMGWMHDTLDYMSTDPVERQYHHQLI 397 (613)
T ss_pred CCcCChHHHHHHHHHHHHHHHHCCCeEEEEEeCCCCccccccccCCcCCcCeeeCchHHHHHHHHHhhChhhHhhccccc
Confidence 5566788999999999999999999999999999999999999999999999886 11
Q ss_pred ---------c---------c--------------------c------hh------------------------------h
Q psy9003 1209 ---------E---------G--------------------S------AL------------------------------S 1214 (1276)
Q Consensus 1209 ---------E---------e--------------------s------aL------------------------------S 1214 (1276)
+ + . ++ +
T Consensus 398 ~~~~~~~~~e~~~~~~sHD~~~~g~~~i~~~~~g~~~~~~~~~r~~~~~~~t~pG~plif~G~E~g~~~~~~~~~~l~W~ 477 (613)
T TIGR01515 398 TFSMLYAFSENFVLPLSHDEVVHGKKSLLNKMPGDYWQKFANYRALLGYMWAHPGKKLLFMGSEFAQGSEWNDTEQLDWH 477 (613)
T ss_pred cHHHHHHhhhccccCCCCCCcccCcccHHHhCCCchHHHHHHHHHHHHHHHhCCCCCEEEcchhcCcCCCCCCCccCCCc
Confidence 0 0 0 00 0
Q ss_pred ----------HHHHHHHHHHHHHhcccCCCC------CeeEeecCCCeEEEEEcC------cEEEEEeCCCCCCcccccc
Q psy9003 1215 ----------ALFDAAMNTTEERFKWLSADP------GYVSTKHEGDKVIIFERA------GLLFAFNFNGTQSFTDYRG 1272 (1276)
Q Consensus 1215 ----------~~F~~~Ln~l~~~~p~L~~~~------~~~l~nHD~~RVlsf~R~------~ll~v~N~~~~~s~~~y~~ 1272 (1276)
.+|.+.|++||++.|.|..+. .++..++..++|++|.|. .+++|+||++. ++.+|+|
T Consensus 478 ~~~~~~~~~l~~~~k~L~~Lr~~~paL~~~~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~~~vv~N~~~~-~~~~Y~i 556 (613)
T TIGR01515 478 LLSFPMHQGVSVFVRDLNRTYQKSKALYEHDFDPQGFEWIDVDDDEQSVFSFIRRAKKHGEALVIICNFTPV-VRHQYRV 556 (613)
T ss_pred cccCcccHHHHHHHHHHHHHHhhCHHhhccCCCCCceEEEEcccCCCCEEEEEEecCCCCCeEEEEEeCCCC-CccceEe
Confidence 468999999999999986431 234444567789999994 49999999996 8899999
Q ss_pred ccCC
Q psy9003 1273 KSNC 1276 (1276)
Q Consensus 1273 ~~~~ 1276 (1276)
|+|.
T Consensus 557 ~~p~ 560 (613)
T TIGR01515 557 GVPQ 560 (613)
T ss_pred CCCC
Confidence 9863
No 8
>PRK12313 glycogen branching enzyme; Provisional
Probab=100.00 E-value=2.8e-60 Score=581.46 Aligned_cols=420 Identities=26% Similarity=0.461 Sum_probs=330.2
Q ss_pred ccccCCCCCcccCeeecCceEEEEEccCCcEEEEEccCCCCccccccceecCCCeEEEEcCCCCCCCcccCcccEEEEEE
Q psy9003 763 CHKAGLFGTPEQLKYLVDECHKAGLLCFMHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVV 842 (1276)
Q Consensus 763 Y~~~G~~Gtp~G~~y~~D~a~FalwAP~A~~VsLvGDFN~wd~~~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV 842 (1276)
|+.+|++.+..+- ..+++|++|||.|++|+|+||||+|++..++|.+...|+|++++|+... |..|+|++
T Consensus 24 ~~~lGah~~~~~~---~~gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~~~Gvw~~~i~~~~~-------g~~Y~y~v 93 (633)
T PRK12313 24 YEYLGAHLEEVDG---EKGTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRRESGVWEGFIPGAKE-------GQLYKYHI 93 (633)
T ss_pred hhcCCcEEeccCC---cccEEEEEECCCCCEEEEEEecCCCCcccccccccCCCEEEEEeCCCCC-------CCEEEEEE
Confidence 5555555443310 1278999999999999999999999988899998889999999997654 46999999
Q ss_pred EEeCCeeeeecCCcceEeecCCCCCccccceeeCCCCCCCCCcCCCC-----CC---CCCCceEEEEecCCccc--cCcc
Q psy9003 843 RNQHGHLLDRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSK-----PK---KPDNLKIYESHVGICTQ--EQKC 912 (1276)
Q Consensus 843 ~~~dG~~~~~~DPYAkav~~~~~~s~v~~~~~~~p~~~~~y~W~~~r-----p~---~~~d~vIYElHVr~ft~--~~~~ 912 (1276)
...+|.+....||||+++...+.. .+.+++|. .|.|.... ++ ..++++|||+|||+|+. ++..
T Consensus 94 ~~~~g~~~~~~DPya~~~~~~~~~----~s~v~d~~---~~~w~~~~~~~~~~~~~~~~~~~~iYe~hv~~f~~~~~~~~ 166 (633)
T PRK12313 94 SRQDGYQVEKIDPFAFYFEARPGT----ASIVWDLP---EYKWKDGLWLARRKRWNALDRPISIYEVHLGSWKRNEDGRP 166 (633)
T ss_pred ECCCCeEEecCCCceEEEecCCCC----ceEECCCc---ccCCCChhhhhccccCCCCCCCceEEEEehhccccCCCCCc
Confidence 777888888999999998775432 23445553 46676542 21 22679999999999986 3567
Q ss_pred CcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCccccccccccc
Q psy9003 913 ASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKE 992 (1276)
Q Consensus 913 Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~ 992 (1276)
|+|+++++++|||||+||||+ |||||++ ++ +.. .+|||++.+||
T Consensus 167 g~~~~~~~~ll~yl~~LGv~~----i~L~Pi~--------------------~~--~~~-----~~~GY~~~~y~----- 210 (633)
T PRK12313 167 LSYRELADELIPYVKEMGYTH----VEFMPLM--------------------EH--PLD-----GSWGYQLTGYF----- 210 (633)
T ss_pred cCHHHHHHHHHHHHHHcCCCE----EEeCchh--------------------cC--CCC-----CCCCCCCcCcC-----
Confidence 999999998679999999999 9999544 43 222 35999999999
Q ss_pred cccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcC
Q psy9003 993 MYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNE 1072 (1276)
Q Consensus 993 ~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~ 1072 (1276)
+|+ |+||++++||+||++||++||+||||+|+||++.++ +++..
T Consensus 211 ----------------~i~-------------------~~~Gt~~d~k~lv~~~H~~Gi~VilD~V~nH~~~~~-~~~~~ 254 (633)
T PRK12313 211 ----------------APT-------------------SRYGTPEDFMYLVDALHQNGIGVILDWVPGHFPKDD-DGLAY 254 (633)
T ss_pred ----------------cCC-------------------CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCc-ccccc
Confidence 565 899999999999999999999999999999999874 33455
Q ss_pred CCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccC
Q psy9003 1073 FDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 1152 (1276)
Q Consensus 1073 f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~ 1152 (1276)
|++...++|.....+.++.|++.+||+++|+||++|+++++||+++|||||||||++..|.+.+++....|.+ +.++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~~---~~~~ 331 (633)
T PRK12313 255 FDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYHLDGLRVDAVSNMLYLDYDEEGEWTP---NKYG 331 (633)
T ss_pred cCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCcEEEEcChhhhhhcccccccCcCC---cccC
Confidence 6664323333333455678999999999999999999999999999999999999998887766551112432 2344
Q ss_pred CCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCCCccccccCCcccCcccC-CC-----------------------
Q psy9003 1153 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLV-SL----------------------- 1208 (1276)
Q Consensus 1153 ~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~~~~p~~~gglGFD~~~n-~l----------------------- 1208 (1276)
++.+.+++.||+++++.+|+.+|++++|||+++.+|.+++|...+|+|||++|+ .+
T Consensus 332 ~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~~~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (633)
T PRK12313 332 GRENLEAIYFLQKLNEVVYLEHPDVLMIAEESTAWPKVTGPVEVGGLGFDYKWNMGWMNDTLRYFEEDPIYRKYHHNLLT 411 (633)
T ss_pred CCCCcHHHHHHHHHHHHHHHHCCCeEEEEECCCCCccccccccCCCCCcCceeCcHHHHHHHHHhhhCccccccccccch
Confidence 556678899999999999999999999999999999999999999999999986 11
Q ss_pred --------c---------c--------------------ch------h--h-----------------------------
Q psy9003 1209 --------E---------G--------------------SA------L--S----------------------------- 1214 (1276)
Q Consensus 1209 --------E---------e--------------------sa------L--S----------------------------- 1214 (1276)
+ + +. + +
T Consensus 412 ~~~~~~~~e~~~l~~sHD~~~~g~~~~~~~~~g~~~~~~~~~r~~~~~~~t~pG~Plif~G~E~g~~~~~~~~~~l~W~~ 491 (633)
T PRK12313 412 FSFMYAFSENFVLPFSHDEVVHGKKSLMHKMPGDRWQQFANLRLLYTYMITHPGKKLLFMGSEFGQFLEWKHDESLEWHL 491 (633)
T ss_pred HHHhhhhhcccccCCCCcccccCCccHHHhcCCCHHHHHHHHHHHHHHHHhCCCCcEeecccccccCccCCccCCCCccc
Confidence 0 0 00 0 0
Q ss_pred ---------HHHHHHHHHHHHHhcccCCC----C--CeeEeecCCCeEEEEEcCc------EEEEEeCCCCCCccccccc
Q psy9003 1215 ---------ALFDAAMNTTEERFKWLSAD----P--GYVSTKHEGDKVIIFERAG------LLFAFNFNGTQSFTDYRGK 1273 (1276)
Q Consensus 1215 ---------~~F~~~Ln~l~~~~p~L~~~----~--~~~l~nHD~~RVlsf~R~~------ll~v~N~~~~~s~~~y~~~ 1273 (1276)
.+|.+.|+++|+++|+|+.+ . .++..++..++|++|.|.. ++||+||++. .+++|+|+
T Consensus 492 ~~~~~~~~l~~~~r~Li~LRr~~paL~~~d~~~~~~~~l~~~~~~~~vlaf~R~~~~~~~~llvv~N~s~~-~~~~y~i~ 570 (633)
T PRK12313 492 LEDPMNAGMQRFTSDLNQLYKDEPALWELDFSPDGFEWIDADDADQSVLSFIRKGKNKGDFLVVVFNFTPV-EREDYRIG 570 (633)
T ss_pred cCChhHHHHHHHHHHHHHHHHhChHhhcccCCCCCcEEEECcCCCCCEEEEEEeCCCCCceEEEEEeCCCC-cccceeEC
Confidence 45899999999999999732 2 2333344467899999965 9999999986 68899999
Q ss_pred cC
Q psy9003 1274 SN 1275 (1276)
Q Consensus 1274 ~~ 1275 (1276)
+|
T Consensus 571 ~p 572 (633)
T PRK12313 571 VP 572 (633)
T ss_pred CC
Confidence 86
No 9
>PRK05402 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.4e-59 Score=582.46 Aligned_cols=427 Identities=28% Similarity=0.497 Sum_probs=337.8
Q ss_pred hhhhhHhh-----ccccCCCCCcccCeeecCceEEEEEccCCcEEEEEccCCCCccccccceec-CCCeEEEEcCCCCCC
Q psy9003 755 QLKYLVDE-----CHKAGLFGTPEQLKYLVDECHKAGLLCFMHVVCAAGDFNNWNREEFAYKKL-DFGKWELVLPPNPDG 828 (1276)
Q Consensus 755 ~l~~F~~~-----Y~~~G~~Gtp~G~~y~~D~a~FalwAP~A~~VsLvGDFN~wd~~~~pM~r~-~~GVWsl~Ip~~~~G 828 (1276)
-+..|..+ |+.+|++.++.. ..++++|++|||.|++|+|+||||+|++..++|.+. ..|+|++++|+...
T Consensus 104 ~~~~~~~g~~~~~~~~LGah~~~~~---~~~gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~~~~Gvw~~~i~~~~~- 179 (726)
T PRK05402 104 DLYLFGEGTHLRLYETLGAHPVTVD---GVSGVRFAVWAPNARRVSVVGDFNGWDGRRHPMRLRGESGVWELFIPGLGE- 179 (726)
T ss_pred HHHHHhCCccchhhhccccEEeccC---CCCcEEEEEECCCCCEEEEEEEcCCCCCccccceEcCCCCEEEEEeCCCCC-
Confidence 34455444 556666544321 136789999999999999999999999888999987 78999999997655
Q ss_pred CcccCcccEEEEEEEEeCCeeeeecCCcceEeecCCCCCccccceeeCCCCCCCCCcCCC-----CC---CCCCCceEEE
Q psy9003 829 SCKLTHLSQVKLVVRNQHGHLLDRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSS-----KP---KKPDNLKIYE 900 (1276)
Q Consensus 829 ~~~i~hGs~YkYrV~~~dG~~~~~~DPYAkav~~~~~~s~v~~~~~~~p~~~~~y~W~~~-----rp---~~~~d~vIYE 900 (1276)
|..|+|++...+|.+....||||+++..++.. .+.++++. .|+|..+ ++ +.+++++|||
T Consensus 180 ------g~~Y~y~v~~~~g~~~~~~DPYa~~~~~~~~~----~s~v~d~~---~~~w~~~~~~~~~~~~~~~~~~~~iYe 246 (726)
T PRK05402 180 ------GELYKFEILTADGELLLKADPYAFAAEVRPAT----ASIVADLS---QYQWNDAAWMEKRAKRNPLDAPISIYE 246 (726)
T ss_pred ------CCEEEEEEeCCCCcEeecCCCceEEEecCCCC----cEEEeCCc---cCCCCCcchhhcccccCcccCCcEEEE
Confidence 46999999877788888999999999886542 13344443 4666654 22 2347899999
Q ss_pred EecCCccc---cCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcc
Q psy9003 901 SHVGICTQ---EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQA 977 (1276)
Q Consensus 901 lHVr~ft~---~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~ 977 (1276)
+|||+|+. .+..|+|+++++++|||||+||||+ |||||++ ++ +.. .
T Consensus 247 ~hv~~f~~~~~~~~~g~~~~i~~~l~~ylk~LGv~~----i~L~Pi~--------------------e~--~~~-----~ 295 (726)
T PRK05402 247 VHLGSWRRHEDGGRFLSYRELADQLIPYVKEMGFTH----VELLPIA--------------------EH--PFD-----G 295 (726)
T ss_pred EehhhhccCCCCCcccCHHHHHHHHHHHHHHcCCCE----EEECCcc--------------------cC--CCC-----C
Confidence 99999984 4567999999998669999999999 9999544 43 222 3
Q ss_pred cCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q psy9003 978 LVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDV 1057 (1276)
Q Consensus 978 ~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDv 1057 (1276)
+|||++.+|| +|+ |+||+++|||+||++||++||+||||+
T Consensus 296 ~~GY~~~~y~---------------------ai~-------------------~~~Gt~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 296 SWGYQPTGYY---------------------APT-------------------SRFGTPDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred CCCCCcccCC---------------------CcC-------------------cccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 5999999999 666 899999999999999999999999999
Q ss_pred eccccCCcccCCCcCCCCCCCcccc-cCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCcccccccc
Q psy9003 1058 VHSHASKNVLDGLNEFDGTQACFFH-DGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHN 1136 (1276)
Q Consensus 1058 V~NHt~~~~~~~~~~f~g~~~~Yy~-~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d 1136 (1276)
|+||++.++ +++..|++.. .|+. ....+.++.|++..||+++|+||++|+++++||++||||||||||++..|.+.+
T Consensus 336 V~NH~~~~~-~~~~~~~~~~-~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~iDG~R~D~v~~~~~~~ 413 (726)
T PRK05402 336 VPAHFPKDA-HGLARFDGTA-LYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFHIDGLRVDAVASMLYLD 413 (726)
T ss_pred CCCCCCCCc-cchhccCCCc-ceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhCCcEEEECCHHHhhhcc
Confidence 999998764 3455666653 3433 333466789999899999999999999999999999999999999998888777
Q ss_pred CCCCCC-CCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCCCccccccCCcccCcccC-CC------
Q psy9003 1137 HGCGEG-FSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLV-SL------ 1208 (1276)
Q Consensus 1137 ~g~g~~-~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~~~~p~~~gglGFD~~~n-~l------ 1208 (1276)
++..++ |. .+.++++.+.+++.||+++++.+|+.+|++++|||+++.+|.+++|...+|+|||++|| .+
T Consensus 414 ~~~~~g~~~---~~~~~~~~~~~~~~fl~~~~~~~~~~~p~~~liaE~~~~~~~~~~~~~~~G~gfd~~wn~~~~~~~l~ 490 (726)
T PRK05402 414 YSRKEGEWI---PNIYGGRENLEAIDFLRELNAVVHEEFPGALTIAEESTAWPGVTRPTEEGGLGFGYKWNMGWMHDTLD 490 (726)
T ss_pred ccccccccc---cccccCcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCcCccccccCCCCCCCceecCCcchHHHH
Confidence 665443 22 23455667778899999999999999999999999999999999998889999999876 11
Q ss_pred -------------------------c---------c------c--------------------hh--h------------
Q psy9003 1209 -------------------------E---------G------S--------------------AL--S------------ 1214 (1276)
Q Consensus 1209 -------------------------E---------e------s--------------------aL--S------------ 1214 (1276)
+ + + ++ +
T Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~sHD~~~~g~~~l~~~~~g~~~~~~~~lrl~~~~~~t~pG~Plif~G~E 570 (726)
T PRK05402 491 YMERDPIYRKYHHNELTFSLLYAYSENFVLPLSHDEVVHGKGSLLGKMPGDDWQKFANLRAYYGYMWAHPGKKLLFMGGE 570 (726)
T ss_pred HHhhCcccccccccchhHHHhHhhhccccCCCCCceeeeCcccHHhhCCCCHHHHHHHHHHHHHHHHHCCCcCEeeCchh
Confidence 0 0 0 00 0
Q ss_pred --------------------------HHHHHHHHHHHHHhcccCCCC------CeeEeecCCCeEEEEEcC------cEE
Q psy9003 1215 --------------------------ALFDAAMNTTEERFKWLSADP------GYVSTKHEGDKVIIFERA------GLL 1256 (1276)
Q Consensus 1215 --------------------------~~F~~~Ln~l~~~~p~L~~~~------~~~l~nHD~~RVlsf~R~------~ll 1256 (1276)
.+|.+.|+++|+++|+|+.+. .++..++..++|++|.|. .++
T Consensus 571 ~g~~~~~~~~~~l~W~~~~~~~~~~l~~~~k~Li~Lr~~~~aL~~g~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~vl 650 (726)
T PRK05402 571 FGQGREWNHDASLDWHLLDFPWHRGVQRLVRDLNHLYRAEPALHELDFDPEGFEWIDADDAENSVLSFLRRGKDDGEPLL 650 (726)
T ss_pred cCCCCCCCccCcCCccccCCcchHHHHHHHHHHHHHHHhChhhhccccCcCCeeEEecccCCCCEEEEEEecCCCCCeEE
Confidence 568899999999999996431 233345557789999994 399
Q ss_pred EEEeCCCCCCccccccccC
Q psy9003 1257 FAFNFNGTQSFTDYRGKSN 1275 (1276)
Q Consensus 1257 ~v~N~~~~~s~~~y~~~~~ 1275 (1276)
||+||++. .+++|+|++|
T Consensus 651 vv~N~~~~-~~~~y~i~~p 668 (726)
T PRK05402 651 VVCNFTPV-PRHDYRLGVP 668 (726)
T ss_pred EEEeCCCC-cccceEECCC
Confidence 99999985 7889999987
No 10
>PLN03244 alpha-amylase; Provisional
Probab=100.00 E-value=1e-58 Score=556.46 Aligned_cols=415 Identities=37% Similarity=0.692 Sum_probs=364.3
Q ss_pred ChhhhhhhHhhccccCCCCCcccCeeecCceEEEEEccCCcEEEEEccCCCCcccccc-----ceecCCCeEEEEcCCC-
Q psy9003 752 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLLCFMHVVCAAGDFNNWNREEFA-----YKKLDFGKWELVLPPN- 825 (1276)
Q Consensus 752 ~~e~l~~F~~~Y~~~G~~Gtp~G~~y~~D~a~FalwAP~A~~VsLvGDFN~wd~~~~p-----M~r~~~GVWsl~Ip~~- 825 (1276)
....++.|+.+|+.+|.+-+|.. ++.|+-|||.|.-++|+||||+|+++.++ |-+++.|+|++.++..
T Consensus 109 ~~~~~~~~~~~~e~~g~~r~~~~------~~~~~ewapga~~~~~~gdfn~w~~~~~~~r~~~~~~~~~g~~~~~~~~~~ 182 (872)
T PLN03244 109 RHFDFQDFASGFEILGMHRHMEH------RVDFMDWAPGARYCAIIGDFNGWSPTENAAREGHFGHDDYGYWFIILEDKL 182 (872)
T ss_pred hhccHHHhhhhhhhhccccCccc------CceeEeecCCcceeeeeccccCCCccccccccccccccccceEEEEechhh
Confidence 34567899999999999988863 24677999999999999999999987665 6678899999998742
Q ss_pred CCCC----------------------------------------------------------------------------
Q psy9003 826 PDGS---------------------------------------------------------------------------- 829 (1276)
Q Consensus 826 ~~G~---------------------------------------------------------------------------- 829 (1276)
.+|+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (872)
T PLN03244 183 REGEEPDELYFQQYNYVDDNDKGDSGVSAEEIFKKANDEYWEPGEDRFIKNRFEVAAKLYEQIFGPNGPETEEELEDIPD 262 (872)
T ss_pred hcCCCchhhhHhhhccccccccCcCCCCHHHHHHHhhhhhcCCchhhHHHhHHHHHHHHHHHhhCCCCccchhhhccCcc
Confidence 2221
Q ss_pred --------------------------------------------------------------------------cccCcc
Q psy9003 830 --------------------------------------------------------------------------CKLTHL 835 (1276)
Q Consensus 830 --------------------------------------------------------------------------~~i~hG 835 (1276)
++|+||
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~i~H~ 342 (872)
T PLN03244 263 AETRYKAWKEEHKDDPPSNLPPCDIIDKGQGKEYDIFNVVDDPEWREKFRAKEPPIAYWLESRKGRKAWLKKYIPAIPHG 342 (872)
T ss_pred hHHHHHhhhhhcccCChhcCCCeEeeecCCCcccceeeeccCHHHHHHhhccCCChhhHHHhhcccCceeecccCCCCCC
Confidence 234499
Q ss_pred cEEEEEEEEeCCeeeeecCCcceEeecCCCCCccccceeeCCCCCCCCCcCCCCCCCCCCceEEEEecCCccccCccCcH
Q psy9003 836 SQVKLVVRNQHGHLLDRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASY 915 (1276)
Q Consensus 836 s~YkYrV~~~dG~~~~~~DPYAkav~~~~~~s~v~~~~~~~p~~~~~y~W~~~rp~~~~d~vIYElHVr~ft~~~~~Gtf 915 (1276)
+.|++++..++|. .+++.+|++++..+.. +..++..+|+|+..+.|.|+..+|+.|..+.|||+||+..+++++.|||
T Consensus 343 s~~k~~~~~~~g~-~~RiPaw~~~~~~~~~-~~~~~~~~w~P~~~~~y~~k~~~p~~p~~lrIYE~HvGms~~e~kv~ty 420 (872)
T PLN03244 343 SKYRLYFNTPDGP-LERIPAWATYVLPDDD-GKQAFAIHWEPPPEAAHKWKNMKPKVPESLRIYECHVGISGSEPKISSF 420 (872)
T ss_pred CeEEEEEEcCCCC-cccCCCCeeeEEecCC-CCceeeeEeCCCcccCCccCCCCCCCCCCceEEEEEeeecCCCCCcccH
Confidence 9999999888888 7899999999988764 4478888999987667999999998889999999999999999999999
Q ss_pred HHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCcccccccccccccc
Q psy9003 916 EDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYT 995 (1276)
Q Consensus 916 ~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~ 995 (1276)
+.+++. + .+||
T Consensus 421 ~eF~~~---------v----------------------------------------------------t~fF-------- 431 (872)
T PLN03244 421 EEFTEK---------V----------------------------------------------------TNFF-------- 431 (872)
T ss_pred HHHhhc---------c----------------------------------------------------Cccc--------
Confidence 999874 1 1366
Q ss_pred ccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCC
Q psy9003 996 HMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDG 1075 (1276)
Q Consensus 996 ~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g 1075 (1276)
||+ ++||+++|||+||++||++||+||||||+||++.+...++..|+|
T Consensus 432 -------------Aps-------------------sRYGTPeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~GL~~fDG 479 (872)
T PLN03244 432 -------------AAS-------------------SRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDG 479 (872)
T ss_pred -------------ccC-------------------cccCCHHHHHHHHHHHHHCCCEEEEEecCccCCCccccchhhcCC
Confidence 666 899999999999999999999999999999999987778889999
Q ss_pred CCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCC
Q psy9003 1076 TQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNV 1155 (1276)
Q Consensus 1076 ~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~ 1155 (1276)
....||+.++.|.++.|+++.+|+.+|+||+||+++++||++||||||||||++..|.|.++|. .+|.+++..+++...
T Consensus 480 t~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna~yWleEyhIDGFRfDaVtSMLY~d~G~-~~f~g~~~~y~n~~~ 558 (872)
T PLN03244 480 SNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNLNWWITEYQIDGFQFHSLASMIYTHNGF-ASFNGDLDDYCNQYV 558 (872)
T ss_pred CccceeccCCCCccCCCCCceecCCCHHHHHHHHHHHHHHHHHhCcCcceeecchhheeecccc-ccccCCccccccccC
Confidence 8778888777788899999999999999999999999999999999999999999999999987 677777777777788
Q ss_pred CchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCCCccccccCCcccCcccC-CC-------------c------------
Q psy9003 1156 DTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLV-SL-------------E------------ 1209 (1276)
Q Consensus 1156 d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~~~~p~~~gglGFD~~~n-~l-------------E------------ 1209 (1276)
|.+++.||+.+++.+++.+|++++|||+++++|.+|+|+..||+||||+|+ .+ +
T Consensus 559 d~dAv~fL~laN~~ih~~~P~~itIAEDsS~~P~vt~Pv~~GGLGFDYKWnMgwmdd~lkylk~~pderw~~~~ItfsL~ 638 (872)
T PLN03244 559 DKDALMYLILANEILHALHPKIITIAEDATYYPGLCEPTSQGGLGFDYYVNLSAPDMWLDFLDNIPDHEWSMSKIVSTLI 638 (872)
T ss_pred CchHHHHHHHHHHHHHHhCCCeEEEEEcCCCCcCccccCCCCCCCccceecCcchHHHHHHHHhCCCcccCHHHHhhhhh
Confidence 999999999999999999999999999999999999999999999999988 42 0
Q ss_pred -------------cc----------------------------h------h-----------------------------
Q psy9003 1210 -------------GS----------------------------A------L----------------------------- 1213 (1276)
Q Consensus 1210 -------------es----------------------------a------L----------------------------- 1213 (1276)
|+ . |
T Consensus 639 ~nrr~~ek~~aYsESHDqaLvGdKTlaf~l~d~~~y~~~~~~~vv~Rg~aLhKMiRllt~~~~G~kkLnFMGNEFGhpe~ 718 (872)
T PLN03244 639 ANKEYADKMLSYAENHNQSISGGRSFAEILFGAIDEDPLGGKELLDRGCSLHKMIRLITFTIGGHAYLNFMGNEFGHPER 718 (872)
T ss_pred cccCCcceEEEEecccceeccccchHHhhhcccccccccccchhhhhhhHHHHHHHHHHHHccCccceeecccccCCchh
Confidence 00 0 0
Q ss_pred ----------h-------------------HHHHHHHHHHHHHhcccCCCCCeeEeecCCCeEEEEEcCcEEEEEeCCCC
Q psy9003 1214 ----------S-------------------ALFDAAMNTTEERFKWLSADPGYVSTKHEGDKVIIFERAGLLFAFNFNGT 1264 (1276)
Q Consensus 1214 ----------S-------------------~~F~~~Ln~l~~~~p~L~~~~~~~l~nHD~~RVlsf~R~~ll~v~N~~~~ 1264 (1276)
| ..|+++|++++++.|+|.++..|+...|+.++|++|+|++++|||||+|+
T Consensus 719 ~dfPr~gN~~s~~~arrdW~Lld~~~hk~L~~FdrdLn~Ly~~~~aL~~gf~wI~~~d~e~kVIAF~R~~LLfVfNF~P~ 798 (872)
T PLN03244 719 IEFPMPSNNFSFSLANRCWDLLENEVHHHLFSFDKDLMDLDENEGILSRGLPNIHHVKDAAMVISFMRGPFLFIFNFHPS 798 (872)
T ss_pred eeccccCCCccccccccCccccCChhHHHHHHHHHHHHHHHhcCcccccCCcEEeeecCCCCEEEEEecCEEEEEeCCCC
Confidence 0 45889999999999999988889999999999999999999999999999
Q ss_pred CCccccccccCC
Q psy9003 1265 QSFTDYRGKSNC 1276 (1276)
Q Consensus 1265 ~s~~~y~~~~~~ 1276 (1276)
+|+++|+||||.
T Consensus 799 ~sy~dYrIGVp~ 810 (872)
T PLN03244 799 NSYEGYDVGVEE 810 (872)
T ss_pred CCccCCEECCCC
Confidence 999999999984
No 11
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-58 Score=553.73 Aligned_cols=353 Identities=30% Similarity=0.496 Sum_probs=298.8
Q ss_pred HhhccccCCCCCcccCeeecCceEEEEEccCCcEEEEEccCCCCcccccccee-cCCCeEEEEcCCCCCCCcccCcccEE
Q psy9003 760 VDECHKAGLFGTPEQLKYLVDECHKAGLLCFMHVVCAAGDFNNWNREEFAYKK-LDFGKWELVLPPNPDGSCKLTHLSQV 838 (1276)
Q Consensus 760 ~~~Y~~~G~~Gtp~G~~y~~D~a~FalwAP~A~~VsLvGDFN~wd~~~~pM~r-~~~GVWsl~Ip~~~~G~~~i~hGs~Y 838 (1276)
..-|+.+|++..+.| +.+++|++|||+|++|+|+||||+|+....+|.. .+.|+|++++|+..+| ..|
T Consensus 20 ~~~~~~~GA~~~~~g----~~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~~~~G~we~~vp~~~~G-------~~Y 88 (628)
T COG0296 20 LRLYEKLGAHPIENG----VSGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDRKESGIWELFVPGAPPG-------TRY 88 (628)
T ss_pred hhhHhhhCcccccCC----CCceEEEEECCCCCeEEEEeecCCccceecccccCCCCceEEEeccCCCCC-------CeE
Confidence 345778888887775 6789999999999999999999999988888864 3779999999987765 699
Q ss_pred EEEEEEeCCeeeeecCCcceEeecCCCCCccccceeeCCCCCCCCCcCC----CCC--CCCCCceEEEEecCCccccCcc
Q psy9003 839 KLVVRNQHGHLLDRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTS----SKP--KKPDNLKIYESHVGICTQEQKC 912 (1276)
Q Consensus 839 kYrV~~~dG~~~~~~DPYAkav~~~~~~s~v~~~~~~~p~~~~~y~W~~----~rp--~~~~d~vIYElHVr~ft~~~~~ 912 (1276)
||++.+.+|....+.||||++....+.. .+.++++. +|.|++ .++ +.+++++|||+||++|+++...
T Consensus 89 ky~l~~~~g~~~~~~DP~a~~~~~~p~~----aS~v~~~~---~y~W~d~~~~~~~~~~~~e~~vIYElHvGs~~~~~~~ 161 (628)
T COG0296 89 KYELIDPSGQLRLKADPYARRQEVGPHT----ASQVVDLP---DYEWQDERWDRAWRGRFWEPIVIYELHVGSFTPDRFL 161 (628)
T ss_pred EEEEeCCCCceeeccCchhhccCCCCCC----cceecCCC---CcccccccccccccCCCCCCceEEEEEeeeccCCCCc
Confidence 9999999998889999999998765531 23334432 366663 222 3457999999999999986223
Q ss_pred CcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCccccccccccc
Q psy9003 913 ASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKE 992 (1276)
Q Consensus 913 Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~ 992 (1276)
|+|...++ +|||||+||||| |+|| |+.|+ |+.+| |||+++.||
T Consensus 162 ~~~e~a~~-llpYl~elG~T~----IELM--------------------Pv~e~--p~~~s-----WGYq~~g~y----- 204 (628)
T COG0296 162 GYFELAIE-LLPYLKELGITH----IELM--------------------PVAEH--PGDRS-----WGYQGTGYY----- 204 (628)
T ss_pred CHHHHHHH-HhHHHHHhCCCE----EEEc--------------------ccccC--CCCCC-----CCCCcceec-----
Confidence 55555555 699999999999 9999 77887 77777 999999999
Q ss_pred cccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcC
Q psy9003 993 MYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNE 1072 (1276)
Q Consensus 993 ~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~ 1072 (1276)
||+ ++||++++||+||++||++||.||||+||||++.+ ..++..
T Consensus 205 ----------------Ap~-------------------sryGtPedfk~fVD~aH~~GIgViLD~V~~HF~~d-~~~L~~ 248 (628)
T COG0296 205 ----------------APT-------------------SRYGTPEDFKALVDAAHQAGIGVILDWVPNHFPPD-GNYLAR 248 (628)
T ss_pred ----------------ccc-------------------ccCCCHHHHHHHHHHHHHcCCEEEEEecCCcCCCC-cchhhh
Confidence 777 89999999999999999999999999999999996 456778
Q ss_pred CCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCC-CCCCCcccc
Q psy9003 1073 FDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEG-FSGHYDEYF 1151 (1276)
Q Consensus 1073 f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~-~~~~~~~~~ 1151 (1276)
|++..-+.+.+...|.++.|+...+|+.+++||+||+++++||+++|||||||+|++..|.+.|+.+..+ | ..+..
T Consensus 249 fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal~Wl~~yHiDGlRvDAV~smly~d~~~~~~~~---~~n~~ 325 (628)
T COG0296 249 FDGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANALYWLEEYHIDGLRVDAVASMLYLDYSRAEGEW---VPNEY 325 (628)
T ss_pred cCCccccccCCcccccCCCcccchhccCcHHHHHHHHHHHHHHHHHhCCcceeeehhhhhhccchhhhhhcc---ccccc
Confidence 8887655555555788999999999999999999999999999999999999999999999887654432 2 13455
Q ss_pred CCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCCCccccccCCcccCcccC
Q psy9003 1152 GLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLV 1206 (1276)
Q Consensus 1152 ~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~~~~p~~~gglGFD~~~n 1206 (1276)
|++.+.++++|++.+++.|+...|++++|+|+|+++|.++.|...+|+||+|+||
T Consensus 326 ggr~n~~a~efl~~~n~~i~~~~pg~~~iaeestd~~~~t~~~~~gG~gf~yk~n 380 (628)
T COG0296 326 GGRENLEAAEFLRNLNSLIHEEEPGAMTIAEESTDDPHVTLPVAIGGLGFGYKWN 380 (628)
T ss_pred CCcccHHHHHHhhhhhhhhcccCCCceeeeeeccCCCCceeeecccccchhhhhh
Confidence 6778899999999999999999999999999999999999999999999999998
No 12
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=100.00 E-value=2.5e-54 Score=536.68 Aligned_cols=352 Identities=15% Similarity=0.151 Sum_probs=261.9
Q ss_pred hhHhhccccCCCCCcccCeeecCceEEEEEccCCcEEEEEccCCCC-ccccccceec-CCCeEEEEcCCCCCCCcccCcc
Q psy9003 758 YLVDECHKAGLFGTPEQLKYLVDECHKAGLLCFMHVVCAAGDFNNW-NREEFAYKKL-DFGKWELVLPPNPDGSCKLTHL 835 (1276)
Q Consensus 758 ~F~~~Y~~~G~~Gtp~G~~y~~D~a~FalwAP~A~~VsLvGDFN~w-d~~~~pM~r~-~~GVWsl~Ip~~~~G~~~i~hG 835 (1276)
.|++.|.+-| ...++|++|..++++|+||||+|++|+|+...+++ ....++|.+. ..|+|++++++...|
T Consensus 114 ~lD~~y~y~~-~~~~LGa~~~~~gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~~~~GVWsv~v~g~~~G------- 185 (898)
T TIGR02103 114 VLDALYAYAG-PALSLGATLTDSGVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRDSTSGVWSAEGGSSWKG------- 185 (898)
T ss_pred hhhHHhhcCC-CCCCCCcEEeCCcEEEEEECCCCCEEEEEEEcCCCCccceEeCccCCCCCEEEEEECcCCCC-------
Confidence 4455555422 22358999999999999999999999999433333 3467899886 689999999987665
Q ss_pred cEEEEEEEEe---CCe--eeeecCCcceEeecCCCCCccccce--eeCCCCCCCCCcCCCC---CC--CCCCceEEEEec
Q psy9003 836 SQVKLVVRNQ---HGH--LLDRLSPWATYVTEPPVVGHAYEQR--IWNPKPQDKHKWTSSK---PK--KPDNLKIYESHV 903 (1276)
Q Consensus 836 s~YkYrV~~~---dG~--~~~~~DPYAkav~~~~~~s~v~~~~--~~~p~~~~~y~W~~~r---p~--~~~d~vIYElHV 903 (1276)
.+|+|+|+.. .|. ...++||||++++.++.+|.+++.. .|.| .+|...+ |+ .+++++|||+||
T Consensus 186 ~~Y~Y~V~v~~p~~G~v~~~~v~DPYA~als~n~~~S~VvDl~~~~~~p-----~~W~~~~~p~p~~~~~~d~iIYElHV 260 (898)
T TIGR02103 186 AYYRYEVTVYHPSTGKVETYLVTDPYSVSLSANSEYSQVVDLNDPALKP-----EGWDALAMPKPQLASFADMVLYELHI 260 (898)
T ss_pred CEeEEEEEEecCCCCeECCeEEeCcCcceEcCCCCCeEEeCCccccCCC-----cchhhcccccCCcCCCcccEEEEEec
Confidence 6999999852 253 4578999999999888888776632 2344 3898754 32 568999999999
Q ss_pred CCccc------cCccCcHHHHHHh---h---hhHHHHcCCCCCccceeeccccccccccccc-----c---eeeccCc-c
Q psy9003 904 GICTQ------EQKCASYEDFVRV---V---IPRIVKQGMAIPDKWIELLKKFKDEDWNMGN-----I---VHTLTNR-R 962 (1276)
Q Consensus 904 r~ft~------~~~~Gtf~gl~ek---~---LdyLK~LGVna~d~wV~LmP~f~~eew~~~~-----p---i~~l~~~-P 962 (1276)
|+||. ...+|||.+++++ + |++|++||||| |+|||+|+|.+.+-.+ + ...++.. |
T Consensus 261 RDFS~~d~s~~~~~rGtYla~tE~~t~gi~hLk~L~eLGVTh----VeLLPv~df~tvdE~~~~~~~~~~~~~~l~~~~~ 336 (898)
T TIGR02103 261 RDFSANDESVPAELRGKYLAFTAADSAGVQHLKKLADAGVTH----LHLLPTFDIATVNEEKEKVADIQQPFSKLCELNP 336 (898)
T ss_pred cccccCCCCCCcCcCceeeehhccchhhhHHHHHHHhCCCcE----EEEcChhhcCccccccccccccccchhhhhcccc
Confidence 99984 2568999999984 3 45555779999 9999999984322110 1 1111100 0
Q ss_pred c--------------------------cccccccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCC
Q psy9003 963 Y--------------------------MEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGT 1016 (1276)
Q Consensus 963 i--------------------------~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas 1016 (1276)
- .+..+......+.+||||+|.+|| +|++||++
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~~d~yNWGYDP~~y~---------------------aPegSYat 395 (898)
T TIGR02103 337 DSKSSEFAGYCDSGSQLKQNDSKDNPEVQALNTLVRNLDSYNWGYDPFHYT---------------------VPEGSYAT 395 (898)
T ss_pred ccccccccccccccccccccccccchhhhhhhhhhccCCCCCCCCCCcccC---------------------CcChhhcc
Confidence 0 000000000124689999999999 66666665
Q ss_pred CCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCccc-ccCCCCCCCCCC-C
Q psy9003 1017 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFF-HDGPRGTHPLWD-S 1094 (1276)
Q Consensus 1017 ~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy-~~~~~g~~~~W~-g 1094 (1276)
.. ....++.|||+||++||++||+||||||||||+..++.....|++..|.|| +.+.+|...++. .
T Consensus 396 dp------------~g~~Ri~Efk~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~~~n~~~~ 463 (898)
T TIGR02103 396 DP------------EGPARIKEFREMVQALNKTGLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGGVENSTCC 463 (898)
T ss_pred CC------------CCchHHHHHHHHHHHHHHCCCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCCeecCCCC
Confidence 31 112468999999999999999999999999999987655566788777555 445556554443 4
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhC
Q psy9003 1095 RLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKY 1174 (1276)
Q Consensus 1095 ~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~ 1174 (1276)
+++|++|||||++|+|+++||++||||||||||+|+++. ..||+++++.+++++
T Consensus 464 ~d~a~e~~~Vrk~iiDsl~~W~~ey~VDGFRfDlm~~~~--------------------------~~f~~~~~~~l~~i~ 517 (898)
T TIGR02103 464 SNTATEHRMMAKLIVDSLVVWAKDYKVDGFRFDLMGHHP--------------------------KAQMLAAREAIKALT 517 (898)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEEechhhCC--------------------------HHHHHHHHHHHHHhC
Confidence 678999999999999999999999999999999999882 459999999999999
Q ss_pred CCeEEEEEccC
Q psy9003 1175 PEIITIAEDVS 1185 (1276)
Q Consensus 1175 PdvilIAE~~s 1185 (1276)
|+++++||.|.
T Consensus 518 pdi~l~GEgW~ 528 (898)
T TIGR02103 518 PEIYFYGEGWD 528 (898)
T ss_pred CCEEEEecCCC
Confidence 99999999986
No 13
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=100.00 E-value=3.1e-53 Score=517.09 Aligned_cols=327 Identities=18% Similarity=0.220 Sum_probs=257.5
Q ss_pred hHhhccccCCCCCcccCeeecCceEEEEEccCCcEEEEEccCCCCcc----ccccceecCCCeEEEEcCCCCCCCcccCc
Q psy9003 759 LVDECHKAGLFGTPEQLKYLVDECHKAGLLCFMHVVCAAGDFNNWNR----EEFAYKKLDFGKWELVLPPNPDGSCKLTH 834 (1276)
Q Consensus 759 F~~~Y~~~G~~Gtp~G~~y~~D~a~FalwAP~A~~VsLvGDFN~wd~----~~~pM~r~~~GVWsl~Ip~~~~G~~~i~h 834 (1276)
|++.|.+ .| |+|+++..++++|+||||+|++|+|++ |++|+. ..++|.+...|+|+++||+...|
T Consensus 2 ~~~~~~~---~~-~lG~~~~~~~~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~~~gvw~~~i~~~~~g------ 70 (605)
T TIGR02104 2 FDDKFYY---DG-ELGAVYTPEKTVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRGENGVWSAVLEGDLHG------ 70 (605)
T ss_pred cccccCC---CC-CCccEEECCeeEEEEECCCCCEEEEEE-EcCCCCCccceEEecccCCCCEEEEEECCCCCC------
Confidence 5555544 45 899999999999999999999999996 777753 36899988899999999987654
Q ss_pred ccEEEEEEEEeCCeeeeecCCcceEeecCCCCCccccceeeCCCCCCCCCcCCCC-C--CCCCCceEEEEecCCcccc--
Q psy9003 835 LSQVKLVVRNQHGHLLDRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSK-P--KKPDNLKIYESHVGICTQE-- 909 (1276)
Q Consensus 835 Gs~YkYrV~~~dG~~~~~~DPYAkav~~~~~~s~v~~~~~~~p~~~~~y~W~~~r-p--~~~~d~vIYElHVr~ft~~-- 909 (1276)
..|+|+|+. +|.+..++||||+++..++.+|++++...+ ..++|..++ + +.+++++|||+|||+||..
T Consensus 71 -~~Y~y~v~~-~~~~~~~~DPya~~~~~~~~~s~v~d~~~~-----~~~~w~~~~~~~~~~~~~~vIYElhv~~ft~~~~ 143 (605)
T TIGR02104 71 -YFYTYQVCI-NGKWRETVDPYAKAVTVNGKRGAVIDLERT-----NPEGWEKDHRPRLENPEDAIIYELHIRDFSIHEN 143 (605)
T ss_pred -CEEEEEEEc-CCCeEEEcCCCcceeccCCCcEEEEccccc-----CccCcccccCCCCCChhHcEEEEEecchhccCCC
Confidence 699999986 466667999999999887665655443222 235788764 3 3568999999999999852
Q ss_pred ---CccCcHHHHHHh----------hhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCc
Q psy9003 910 ---QKCASYEDFVRV----------VIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQ 976 (1276)
Q Consensus 910 ---~~~Gtf~gl~ek----------~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~ 976 (1276)
..+|||.|++++ +|||||+||||+ |||||++++..- .+. .+ ...
T Consensus 144 ~~~~~~G~f~~~~e~~~~~~~g~~~~LdyL~~LGvt~----I~L~Pi~~~~~~--------------~~~----~~-~~~ 200 (605)
T TIGR02104 144 SGVKNKGKYLGLTETGTKGPNGVSTGLDYLKELGVTH----VQLLPVFDFAGV--------------DEE----DP-NNA 200 (605)
T ss_pred CCcCCCCceeeeeccCccccccchhHHHHHHHcCCCE----EEeCCccccccc--------------ccc----cC-CCC
Confidence 237999999975 499999999999 999988765211 000 01 124
Q ss_pred ccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCC--CCHHHHHHHHHHHHHcCCEEE
Q psy9003 977 ALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLF--GTPEQLKYLVDECHKAGLYVL 1054 (1276)
Q Consensus 977 ~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~--Gt~eEfK~LV~alHk~GI~VI 1054 (1276)
++|||++.+|| +|+++|++. |.+ ++++|||+||++||++||+||
T Consensus 201 ~~wGY~~~~y~---------------------~~~~~y~~~-------------p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 201 YNWGYDPLNYN---------------------VPEGSYSTN-------------PYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred CCCCCCCccCC---------------------CcChhhhcC-------------CCccchHHHHHHHHHHHHHHCCCEEE
Confidence 56999999999 677666653 333 358999999999999999999
Q ss_pred EEEeccccCCcccCCCcCCCCCCCcc-cccCCCCCCCCCC--CcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccc
Q psy9003 1055 LDVVHSHASKNVLDGLNEFDGTQACF-FHDGPRGTHPLWD--SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTS 1131 (1276)
Q Consensus 1055 LDvV~NHt~~~~~~~~~~f~g~~~~Y-y~~~~~g~~~~W~--g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~ 1131 (1276)
||||+|||+... ...|++..+.| |+.++.+.+.++. ++++|+++|+||++|+++++||++||||||||||+|..
T Consensus 247 lDvV~NH~~~~~---~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e~~iDGfR~D~~~~ 323 (605)
T TIGR02104 247 MDVVYNHTYSRE---ESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVKEYNIDGFRFDLMGI 323 (605)
T ss_pred EEEEcCCccCCC---CCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHHHcCCCEEEEechhc
Confidence 999999998642 23577776644 4555566555443 57899999999999999999999999999999999876
Q ss_pred cccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCC
Q psy9003 1132 MLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPA 1189 (1276)
Q Consensus 1132 L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~ 1189 (1276)
+. ..||+++++.+++.+|++++|||.|...+.
T Consensus 324 ~~--------------------------~~~~~~~~~~~~~~~p~~~ligE~w~~~~~ 355 (605)
T TIGR02104 324 HD--------------------------IETMNEIRKALNKIDPNILLYGEGWDLGTP 355 (605)
T ss_pred CC--------------------------HHHHHHHHHHHHhhCCCeEEEEccCCCCCC
Confidence 62 358999999999999999999999876543
No 14
>PLN02877 alpha-amylase/limit dextrinase
Probab=100.00 E-value=6.8e-52 Score=513.83 Aligned_cols=347 Identities=17% Similarity=0.162 Sum_probs=252.0
Q ss_pred hhHhhccccCCCCCcccCeeecCceEEEEEccCCcEEEEEccCCCCc---c-ccccceecCCCeEEEEcCCCCCCCcccC
Q psy9003 758 YLVDECHKAGLFGTPEQLKYLVDECHKAGLLCFMHVVCAAGDFNNWN---R-EEFAYKKLDFGKWELVLPPNPDGSCKLT 833 (1276)
Q Consensus 758 ~F~~~Y~~~G~~Gtp~G~~y~~D~a~FalwAP~A~~VsLvGDFN~wd---~-~~~pM~r~~~GVWsl~Ip~~~~G~~~i~ 833 (1276)
.|++.|.+ . .|+|++|..++++|+||||+|++|+|+. |+.++ . ..++|. ...|+|++++++...|
T Consensus 204 ~lD~~y~y---~-~~LGA~~~~~g~~F~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m~-~~~GVWsv~v~~~~~G----- 272 (970)
T PLN02877 204 VLDDLFAY---D-GPLGAHFSKDAVSLYLWAPTAQAVSLCL-YDDPRGKEPLEIVQLK-ESNGVWSVEGPKSWEG----- 272 (970)
T ss_pred hhhhhccC---C-CCCcceEecCCEEEEEECCCCCEEEEEE-ecCCCCccceEEeccc-CCCCEEEEEeccCCCC-----
Confidence 44555544 2 3799999999999999999999999983 33332 1 356787 6799999999987665
Q ss_pred cccEEEEEEEEe---CCe--eeeecCCcceEeecCCCCCccccc--eeeCCCCCCCCCcCCC---CCC--CCCCceEEEE
Q psy9003 834 HLSQVKLVVRNQ---HGH--LLDRLSPWATYVTEPPVVGHAYEQ--RIWNPKPQDKHKWTSS---KPK--KPDNLKIYES 901 (1276)
Q Consensus 834 hGs~YkYrV~~~---dG~--~~~~~DPYAkav~~~~~~s~v~~~--~~~~p~~~~~y~W~~~---rp~--~~~d~vIYEl 901 (1276)
.+|+|+|+.. .|. +..++||||++++.++.++.+.+. ..+.|. +|... +|+ .+++++|||+
T Consensus 273 --~~Y~Y~V~v~~p~~g~~~~~~v~DPYA~als~ng~~S~vvDl~~~~~~p~-----gW~~~~~~~p~~~~~~D~VIYEl 345 (970)
T PLN02877 273 --CYYVYEVSVYHPSTGKVETCYANDPYARGLSADGRRTLLVDLDSDDLKPE-----GWDNLAKEKPCLLSFSDISIYEL 345 (970)
T ss_pred --CeeEEEEeecccCCCcccccccCCccceEEecCCCceEEECCccccCCCh-----hhhhcccccCccCCCcccEEEEE
Confidence 6999999742 133 356899999999988777766553 234444 79863 342 5689999999
Q ss_pred ecCCccc------cCccCcHHHHHHh---hhhH---HHHcCCCCCccceeecccccccccccccc-----e-eeccCccc
Q psy9003 902 HVGICTQ------EQKCASYEDFVRV---VIPR---IVKQGMAIPDKWIELLKKFKDEDWNMGNI-----V-HTLTNRRY 963 (1276)
Q Consensus 902 HVr~ft~------~~~~Gtf~gl~ek---~Ldy---LK~LGVna~d~wV~LmP~f~~eew~~~~p-----i-~~l~~~Pi 963 (1276)
|||+||. ...+|||.+++++ +++| |++||||| |||||+|+|...+-.+. . ..+...|.
T Consensus 346 HVRDFS~~d~sv~~~~RGtylgftE~~s~gi~hLk~LkelGVTh----VeLLPvfDf~tvdE~~~~~~~~~~~~l~~~~~ 421 (970)
T PLN02877 346 HVRDFSANDETVHPDFRGGYLAFTSQDSAGVLHLKKLADAGLTH----VHLLPTFQFGSVDDEKENWKCVDPKELEKLPP 421 (970)
T ss_pred eccccccCCCCCCcCCCCcchhhhhhhhhHHHHHHHHHHcCCCE----EEeCCccccCCcccccccccccccchhccccc
Confidence 9999985 2568999999984 3455 55559999 99999999843211000 0 00000000
Q ss_pred ----cccccccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHH
Q psy9003 964 ----MEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQL 1039 (1276)
Q Consensus 964 ----~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEf 1039 (1276)
....+......+.+||||+|.+|| +|+++|++.. ++. .++.||
T Consensus 422 ~s~~~q~~v~~~~~~d~yNWGYDP~~Yf---------------------aPEgSYatdP-----------~g~-~RI~ef 468 (970)
T PLN02877 422 DSEEQQAAITAIQDDDGYNWGYNPVLWG---------------------VPKGSYASNP-----------DGP-CRIIEF 468 (970)
T ss_pred cchhhhhcccccccCCCCCCCCCccccC---------------------CCCcccccCC-----------CCc-chHHHH
Confidence 000000001125699999999999 6666666521 011 478999
Q ss_pred HHHHHHHHHcCCEEEEEEeccccCCcccCC-CcCCCCCCC-cccccCCCCCCCCCC-CcCCCCCcHHHHHHHHHHHHHHH
Q psy9003 1040 KYLVDECHKAGLYVLLDVVHSHASKNVLDG-LNEFDGTQA-CFFHDGPRGTHPLWD-SRLFNYSEIEVLRFLLSNLRWYL 1116 (1276)
Q Consensus 1040 K~LV~alHk~GI~VILDvV~NHt~~~~~~~-~~~f~g~~~-~Yy~~~~~g~~~~W~-g~~LN~~np~Vr~~Iidsl~~Wv 1116 (1276)
|+||++||++||+||||||||||+..++++ .+.+++..+ +||+.+++|.+.++. +++++.+++|||++|+|+++||+
T Consensus 469 k~mV~~lH~~GI~VImDVVyNHt~~~g~~~~~s~ld~~vP~YY~r~~~~G~~~ns~c~n~~Ase~~mvrklIlDsl~yW~ 548 (970)
T PLN02877 469 RKMVQALNRIGLRVVLDVVYNHLHSSGPFDENSVLDKIVPGYYLRRNSDGFIENSTCVNNTASEHYMVDRLIVDDLLNWA 548 (970)
T ss_pred HHHHHHHHHCCCEEEEEECCccccCCCCcchhhcccCCCCCceEEECCCCCcccCCccCCCccCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999877665 367888887 555667777766654 56779999999999999999999
Q ss_pred HhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhC--------CCeEEEEEccC
Q psy9003 1117 DEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKY--------PEIITIAEDVS 1185 (1276)
Q Consensus 1117 ~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~--------PdvilIAE~~s 1185 (1276)
+||||||||||+|+++. ...|..+++.++++. |+++++||.|.
T Consensus 549 ~ey~VDGFRFDlmg~i~--------------------------~~tm~~~~~~L~~i~~~~~~~dg~~i~lyGEgW~ 599 (970)
T PLN02877 549 VNYKVDGFRFDLMGHLM--------------------------KRTMVRAKDALQSLTLERDGVDGSSIYLYGEGWD 599 (970)
T ss_pred HHhCCCEEEEEcccccc--------------------------HHHHHHHHHHHHHHhhhhcccCCCceEEEEeCCC
Confidence 99999999999999883 124556666666663 78999999995
No 15
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=100.00 E-value=2.1e-51 Score=518.69 Aligned_cols=346 Identities=21% Similarity=0.242 Sum_probs=255.7
Q ss_pred hhHhhccccCCCCCcccCeeecCc-eEEEEEccCCcEEEEEc-cCCCCcc--ccccceecCCCeEEEEcCCCCCCCcccC
Q psy9003 758 YLVDECHKAGLFGTPEQLKYLVDE-CHKAGLLCFMHVVCAAG-DFNNWNR--EEFAYKKLDFGKWELVLPPNPDGSCKLT 833 (1276)
Q Consensus 758 ~F~~~Y~~~G~~Gtp~G~~y~~D~-a~FalwAP~A~~VsLvG-DFN~wd~--~~~pM~r~~~GVWsl~Ip~~~~G~~~i~ 833 (1276)
.|++.|.+ .| ++|+++..++ ++|+||||+|++|+|+. ++++|+. ..++|.+...|+|++++++...|. ...
T Consensus 308 ~~d~~y~y---~g-~LGa~~~~~g~v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~~~GvW~v~v~~~~~G~-~d~ 382 (1111)
T TIGR02102 308 LKDEMYAY---DG-KLGAQLHEDGTVTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKGDRGVWEVQLTKENTGI-DSL 382 (1111)
T ss_pred hhhhhhcc---CC-CCCCEEecCCCEEEEEECCCCCEEEEEEEeCCCCCCceeeEecccCCCCEEEEEECCcccCc-ccC
Confidence 45555543 33 6999998876 79999999999999984 4555543 478999988999999999754442 235
Q ss_pred cccEEEEEEEEeCCeeeeecCCcceEeecCCC-C----CccccceeeCCCCC--CCCCcCCCCC-CCCCCceEEEEecCC
Q psy9003 834 HLSQVKLVVRNQHGHLLDRLSPWATYVTEPPV-V----GHAYEQRIWNPKPQ--DKHKWTSSKP-KKPDNLKIYESHVGI 905 (1276)
Q Consensus 834 hGs~YkYrV~~~dG~~~~~~DPYAkav~~~~~-~----s~v~~~~~~~p~~~--~~y~W~~~rp-~~~~d~vIYElHVr~ 905 (1276)
+|.+|+|+|.. .|....++||||+++..... . .....+.++++... ..++|....+ ..+++++|||+|||+
T Consensus 383 ~G~~Y~Y~V~~-~~~~~~~~DPYA~al~~~n~~~~~~~~~~~ks~vvD~~~~~p~~~~~~~~~~~~~~~d~vIYElHVrd 461 (1111)
T TIGR02102 383 TGYYYHYEITR-GGDKVLALDPYAKSLAAWNDATSDDQIKVAKAAFVDPSSLGPQELDFAKIENFKKREDAIIYEAHVRD 461 (1111)
T ss_pred CCceEEEEEEC-CCceEEEeChhheEEeccCcccccccCCCCceEEEcCcccCccccccccccccCCccceEEEEEechh
Confidence 78899999985 46667899999999875221 0 01122334444321 2466775322 356899999999999
Q ss_pred cccc--------CccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcc
Q psy9003 906 CTQE--------QKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQA 977 (1276)
Q Consensus 906 ft~~--------~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~ 977 (1276)
||.. ..+|+|+|++++ |||||+||||+ |||||+|++..-+ +.+......++..+...+
T Consensus 462 Ft~d~~~~~~~~~~~Gtf~gl~ek-LdYLkeLGVT~----I~LmPv~d~~~~~---------e~~~~~~~~~~~~~~~~y 527 (1111)
T TIGR02102 462 FTSDPAIAGDLTAQFGTFAAFVEK-LDYLQDLGVTH----IQLLPVLSYFFVN---------EFKNKERMLDYASSNTNY 527 (1111)
T ss_pred hCcCCCCCcccccCCcCHHHHHHh-HHHHHHcCCCE----EEEcCcccccccc---------cccccccccccccccccc
Confidence 9842 147999999997 99999999999 9999998741100 000000000111122456
Q ss_pred cCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEE
Q psy9003 978 LVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDV 1057 (1276)
Q Consensus 978 ~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDv 1057 (1276)
+|||+|.+|| +|+++|++.. . .+.++++|||+||++||++||+|||||
T Consensus 528 nWGYdp~~yf---------------------ape~~Ygtdp--------~---dp~~ri~EfK~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 528 NWGYDPQNYF---------------------ALSGMYSEDP--------K---DPELRIAEFKNLINEIHKRGMGVILDV 575 (1111)
T ss_pred ccCCCcCcCc---------------------ccccccccCC--------c---CccccHHHHHHHHHHHHHCCCEEEEec
Confidence 7999999999 6666666521 0 233579999999999999999999999
Q ss_pred eccccCCcccCCCcCCCCCCCcccc-cCCCCC-CCCCCCcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccc
Q psy9003 1058 VHSHASKNVLDGLNEFDGTQACFFH-DGPRGT-HPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYH 1135 (1276)
Q Consensus 1058 V~NHt~~~~~~~~~~f~g~~~~Yy~-~~~~g~-~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~ 1135 (1276)
|||||+..+ .|++..+.||+ .+.+|. ...|+++++|+++||||++|+++++||++||||||||||+|+.+.
T Consensus 576 VyNHt~~~~-----~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ey~VDGFRfDl~g~~d-- 648 (1111)
T TIGR02102 576 VYNHTAKVY-----IFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDEFKVDGFRFDMMGDHD-- 648 (1111)
T ss_pred ccccccccc-----cccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHhcCCcEEEEeccccCC--
Confidence 999999863 57777776654 444554 346778899999999999999999999999999999999987541
Q ss_pred cCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCC
Q psy9003 1136 NHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSG 1186 (1276)
Q Consensus 1136 d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~ 1186 (1276)
..+|+.++..++++.|++++|||.|..
T Consensus 649 ------------------------~~~~~~~~~~l~~~dP~~~liGE~W~~ 675 (1111)
T TIGR02102 649 ------------------------AASIEIAYKEAKAINPNIIMIGEGWRT 675 (1111)
T ss_pred ------------------------HHHHHHHHHHHHHhCcCEEEEEecccc
Confidence 247888888899999999999999874
No 16
>PRK03705 glycogen debranching enzyme; Provisional
Probab=100.00 E-value=4.9e-50 Score=489.99 Aligned_cols=333 Identities=20% Similarity=0.246 Sum_probs=246.9
Q ss_pred CCcccCeeecCceEEEEEccCCcEEEEEccCCCC-ccccccceecCCCeEEEEcCCCCCCCcccCcccEEEEEEEEe---
Q psy9003 770 GTPEQLKYLVDECHKAGLLCFMHVVCAAGDFNNW-NREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQ--- 845 (1276)
Q Consensus 770 Gtp~G~~y~~D~a~FalwAP~A~~VsLvGDFN~w-d~~~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~~--- 845 (1276)
..|+|+++..++++|+||||+|++|+|+. |+.+ ....++|.+..+|+|++++|+...| .+|+|+|+++
T Consensus 9 ~~pLGa~~~~~g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~~gvW~~~v~~~~~G-------~~Y~yrv~g~~~p 80 (658)
T PRK03705 9 PTPLGAHYDGQGVNFTLFSAHAERVELCV-FDENGQEQRYDLPARSGDIWHGYLPGARPG-------LRYGYRVHGPWQP 80 (658)
T ss_pred CCCcceEEeCCCEEEEEECCCCCEEEEEE-EcCCCCeeeEeeeeccCCEEEEEECCCCCC-------CEEEEEEccccCc
Confidence 35789999999999999999999999984 4443 2346899888899999999987655 6999999863
Q ss_pred -CCee----eeecCCcceEeecCCCCCcc----------ccceeeCCCC---CCCCCcCCCCCC--CCCCceEEEEecCC
Q psy9003 846 -HGHL----LDRLSPWATYVTEPPVVGHA----------YEQRIWNPKP---QDKHKWTSSKPK--KPDNLKIYESHVGI 905 (1276)
Q Consensus 846 -dG~~----~~~~DPYAkav~~~~~~s~v----------~~~~~~~p~~---~~~y~W~~~rp~--~~~d~vIYElHVr~ 905 (1276)
.|.+ ...+||||++++.....+.. .++....|++ ..+|+|++++++ .++++||||+|||+
T Consensus 81 ~~g~~~~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~W~~~~~p~~~~~~~vIYE~hvr~ 160 (658)
T PRK03705 81 AQGHRFNPAKLLIDPCARQVEGEVKDDPRLHGGHDEPDYRDNAAIAPKCVVVDDHYDWEDDAPPRTPWGSTVIYEAHVRG 160 (658)
T ss_pred ccCcccCCCcEecCcCceEEccccccCccccccccCCccccccccCCceEEecCCCCCCCCCCCCCCccccEEEEEehhh
Confidence 3543 46899999999864311100 0111112221 135899987543 45899999999999
Q ss_pred ccc------cCccCcHHHHHHh-hhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCccc
Q psy9003 906 CTQ------EQKCASYEDFVRV-VIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQAL 978 (1276)
Q Consensus 906 ft~------~~~~Gtf~gl~ek-~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~ 978 (1276)
||. ...+|||+|++++ .|||||+||||+ |||||+|++.+- +.. ...+ ..++
T Consensus 161 ft~~~~~~~~~~~Gtf~g~~~~~~LdYLk~LGvt~----I~L~Pv~~~~~~------------~~~----~~~g--~~~y 218 (658)
T PRK03705 161 LTYLHPEIPVEIRGTYAALGHPVMIAYLKQLGITA----LELLPVAQFASE------------PRL----QRMG--LSNY 218 (658)
T ss_pred hcccCCCCCccccccHHHhhcccchHHHHHcCCCE----EEecCcccCCCc------------ccc----cccc--cccc
Confidence 984 2457999999973 599999999999 999988875211 000 0011 2467
Q ss_pred CCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEe
Q psy9003 979 VGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVV 1058 (1276)
Q Consensus 979 WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV 1058 (1276)
|||+|.+|| +|+++|++. + .++++|||+||++||++||+||||||
T Consensus 219 wGYd~~~yf---------------------a~d~~ygt~-------------~-~~~~~efk~LV~~~H~~GI~VIlDvV 263 (658)
T PRK03705 219 WGYNPLAMF---------------------ALDPAYASG-------------P-ETALDEFRDAVKALHKAGIEVILDVV 263 (658)
T ss_pred cCccccccc---------------------ccccccCCC-------------C-cchHHHHHHHHHHHHHCCCEEEEEEc
Confidence 999999999 777667763 1 15689999999999999999999999
Q ss_pred ccccCCcccCCC-cCCCCCC-CcccccCCCCCCCCCC--CcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCcccccc
Q psy9003 1059 HSHASKNVLDGL-NEFDGTQ-ACFFHDGPRGTHPLWD--SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLY 1134 (1276)
Q Consensus 1059 ~NHt~~~~~~~~-~~f~g~~-~~Yy~~~~~g~~~~W~--g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~ 1134 (1276)
||||+.....+. ..+++.+ ++||+.++++.+.+|. +++||+++|+||++|+++++||++||||||||||+|..|.+
T Consensus 264 ~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid~l~~W~~e~gVDGFRfD~a~~l~~ 343 (658)
T PRK03705 264 FNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAIDCLRYWVETCHVDGFRFDLATVLGR 343 (658)
T ss_pred ccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHHHHHHHHHHhCCCEEEEEcHhhhCc
Confidence 999997543332 3456665 4677766777788887 48999999999999999999999999999999999999842
Q ss_pred ccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCC
Q psy9003 1135 HNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGM 1187 (1276)
Q Consensus 1135 ~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~ 1187 (1276)
. ++|. . ...+++.++. ..+.|++++|||.|...
T Consensus 344 ~-----~~~~------------~-~~~~~~ai~~--d~vl~~~~ligE~Wd~~ 376 (658)
T PRK03705 344 T-----PEFR------------Q-DAPLFTAIQN--DPVLSQVKLIAEPWDIG 376 (658)
T ss_pred C-----cccc------------h-hhHHHHHHhh--CccccceEEEEecccCC
Confidence 1 1111 0 1224444432 24678999999998654
No 17
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=100.00 E-value=6.3e-50 Score=491.84 Aligned_cols=328 Identities=22% Similarity=0.289 Sum_probs=246.6
Q ss_pred CCcccCeeecCceEEEEEccCCcEEEEEccCCCCc---cccccceecCCCeEEEEcCCCCCCCcccCcccEEEEEEEEe-
Q psy9003 770 GTPEQLKYLVDECHKAGLLCFMHVVCAAGDFNNWN---REEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQ- 845 (1276)
Q Consensus 770 Gtp~G~~y~~D~a~FalwAP~A~~VsLvGDFN~wd---~~~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~~- 845 (1276)
..|+|+++..++++|+||||+|++|+|+- |+.++ ..+++|.+..+|+|+++|++..+| .+|+|+|+++
T Consensus 4 ~~~LGa~~~~~g~~F~vwap~A~~V~L~l-~~~~~~~~~~~~~m~~~~~gvW~~~v~~~~~g-------~~Y~yrv~g~~ 75 (688)
T TIGR02100 4 PFPLGATWDGQGVNFALFSANAEKVELCL-FDAQGEKEEARLPLPERTDDIWHGYLPGAQPG-------QLYGYRVHGPY 75 (688)
T ss_pred CcCCCeEEeCCcEEEEEECCCCCEEEEEE-EcCCCCceeeEEecccCCCCEEEEEECCCCCC-------CEEEEEEeeee
Confidence 35789999999999999999999999872 33332 136799888899999999987665 6999999863
Q ss_pred ---CCee----eeecCCcceEeecCCCCCc------------------------cccceeeCCCCCCCCCcCCC--CCC-
Q psy9003 846 ---HGHL----LDRLSPWATYVTEPPVVGH------------------------AYEQRIWNPKPQDKHKWTSS--KPK- 891 (1276)
Q Consensus 846 ---dG~~----~~~~DPYAkav~~~~~~s~------------------------v~~~~~~~p~~~~~y~W~~~--rp~- 891 (1276)
+|.+ ...+||||+++..+..++. ...+.++++ .|+|..+ +|.
T Consensus 76 ~~~~g~~f~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~d~----~~~w~~~~~~p~~ 151 (688)
T TIGR02100 76 DPENGHRFNPNKLLLDPYAKALDGDLIWDDALFGYRIGHPDQDLSFDERDSAPGMPKAVVVDP----DFDWGGDEQRPRT 151 (688)
T ss_pred CCCCCcccCcCceecCcCceeecCCCcccccccccccccccccccccccccccccCceEEeCC----CCCCCCcccCCCC
Confidence 3543 4689999999986532111 012333333 4889876 333
Q ss_pred CCCCceEEEEecCCccc------cCccCcHHHHHHh-hhhHHHHcCCCCCccceeecccccccccccccceeeccCcccc
Q psy9003 892 KPDNLKIYESHVGICTQ------EQKCASYEDFVRV-VIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYM 964 (1276)
Q Consensus 892 ~~~d~vIYElHVr~ft~------~~~~Gtf~gl~ek-~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~ 964 (1276)
.++++||||+|||+||. ...+|||+|++++ .|||||+||||+ |||||+|++.+- ....
T Consensus 152 ~~~d~iIYE~hvr~Ft~~~~~~~~~~~Gtf~Gi~~~~~LdyLk~LGvta----I~L~Pi~~~~~~-----------~~~~ 216 (688)
T TIGR02100 152 PWEDTIIYEAHVKGFTQLHPDIPEELRGTYAGLAHPAMIDYLKKLGVTA----VELLPVHAFIDD-----------RHLL 216 (688)
T ss_pred CccccEEEEEEhHHhcCCCCCCCcccccCHHHHhccchhHHHHHcCCCE----EEECCcccCCcc-----------cccc
Confidence 56899999999999985 2457999999984 699999999999 999988875210 0000
Q ss_pred ccccccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHH
Q psy9003 965 EKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 1044 (1276)
Q Consensus 965 E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~ 1044 (1276)
+ ....++|||+|.+|| +|+++|++. |+++|||+||+
T Consensus 217 ~-------~~~~~ywGYd~~~y~---------------------a~d~~y~~~----------------g~~~efk~LV~ 252 (688)
T TIGR02100 217 E-------KGLRNYWGYNTLGFF---------------------APEPRYLAS----------------GQVAEFKTMVR 252 (688)
T ss_pred c-------cCCCCccCcCccccc---------------------ccChhhcCC----------------CCHHHHHHHHH
Confidence 0 012467999999999 777556541 68999999999
Q ss_pred HHHHcCCEEEEEEeccccCCcccCCC-cCCCCCCC-cccccCCC--CCCCCCC--CcCCCCCcHHHHHHHHHHHHHHHHh
Q psy9003 1045 ECHKAGLYVLLDVVHSHASKNVLDGL-NEFDGTQA-CFFHDGPR--GTHPLWD--SRLFNYSEIEVLRFLLSNLRWYLDE 1118 (1276)
Q Consensus 1045 alHk~GI~VILDvV~NHt~~~~~~~~-~~f~g~~~-~Yy~~~~~--g~~~~W~--g~~LN~~np~Vr~~Iidsl~~Wv~e 1118 (1276)
+||++||+||||||||||+..+..+. ..|++.++ +||+..++ +.+.+|. ++++|+++|+||++|+++++||++|
T Consensus 253 ~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~i~d~l~~W~~e 332 (688)
T TIGR02100 253 ALHDAGIEVILDVVYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQMVMDSLRYWVTE 332 (688)
T ss_pred HHHHCCCEEEEEECcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998765433 35666553 67766543 4455554 5899999999999999999999999
Q ss_pred CCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCC
Q psy9003 1119 YQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGM 1187 (1276)
Q Consensus 1119 ygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~ 1187 (1276)
|||||||||+|..|.+... +|. . ...|++++++ ....|++++|||.|...
T Consensus 333 ~gIDGfR~D~a~~l~~~~~----~~~------------~-~~~~~~~i~~--d~~~~~~~ligE~W~~~ 382 (688)
T TIGR02100 333 MHVDGFRFDLATTLGRELY----GFD------------M-LSGFFTAIRQ--DPVLAQVKLIAEPWDIG 382 (688)
T ss_pred cCCcEEEEechhhhccccC----CCc------------c-cHHHHHHHHh--CcccCCeEEEEeeecCC
Confidence 9999999999998853211 111 1 2347777765 24789999999998653
No 18
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=100.00 E-value=2.9e-49 Score=476.32 Aligned_cols=298 Identities=24% Similarity=0.336 Sum_probs=242.0
Q ss_pred eEEEEEccCCcEEEEEccCCCCccccccceecCCCeEEEEcCCCCCCCcccCcccEEEEEEEEeCCeeeeecCCcceEee
Q psy9003 782 CHKAGLLCFMHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATYVT 861 (1276)
Q Consensus 782 a~FalwAP~A~~VsLvGDFN~wd~~~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~~dG~~~~~~DPYAkav~ 861 (1276)
++|++|||+|++|+|+.+ +..++|.+.+.|+|++++++... |..|+|+|+ | ...++||||+++.
T Consensus 1 v~FrlwAP~A~~V~L~l~-----~~~~~m~k~~~GvW~~~v~~~~~-------G~~Y~y~v~---g-~~~v~DPya~~~~ 64 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLN-----GALHAMQRLGDGWFEITVPPVGP-------GDRYGYVLD---D-GTPVPDPASRRQP 64 (542)
T ss_pred CEEEEECCCCCEEEEEeC-----CCEEeCeECCCCEEEEEECCCCC-------CCEEEEEEe---e-eEEecCccccccc
Confidence 479999999999999852 24689999899999999997765 469999995 3 3468999999864
Q ss_pred cCCCCCccccceeeCCCCCCCCCcCCCCC--CCCCCceEEEEecCCccccCccCcHHHHHHhhhhHHHHcCCCCCcccee
Q psy9003 862 EPPVVGHAYEQRIWNPKPQDKHKWTSSKP--KKPDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIE 939 (1276)
Q Consensus 862 ~~~~~s~v~~~~~~~p~~~~~y~W~~~rp--~~~~d~vIYElHVr~ft~~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~ 939 (1276)
.... ..+.+++|. .|+|+.+.+ +.+++++|||+|||+|++ .|+|+|++++ |||||+||||+ ||
T Consensus 65 ~~~~----~~S~V~d~~---~~~w~~~~~~~~~~~~~viYE~hv~~f~~---~G~~~gi~~~-l~yl~~LGv~~----i~ 129 (542)
T TIGR02402 65 DGVH----GPSQVVDPD---RYAWQDTGWRGRPLEEAVIYELHVGTFTP---EGTFDAAIEK-LPYLADLGITA----IE 129 (542)
T ss_pred cCCC----CCeEEecCc---ccCCCCccccCCCccccEEEEEEhhhcCC---CCCHHHHHHh-hHHHHHcCCCE----EE
Confidence 3221 124556664 478887654 346899999999999986 6999999996 99999999999 99
Q ss_pred ecccccccccccccceeeccCccccccccccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCC
Q psy9003 940 LLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQ 1019 (1276)
Q Consensus 940 LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~ 1019 (1276)
|||+++ + + ..++|||++.+|| +|+
T Consensus 130 L~Pi~~--------------------~--~-----~~~~~GY~~~~~~---------------------~~~-------- 153 (542)
T TIGR02402 130 LMPVAQ--------------------F--P-----GTRGWGYDGVLPY---------------------APH-------- 153 (542)
T ss_pred eCcccc--------------------C--C-----CCCCCCCCccCcc---------------------ccc--------
Confidence 995543 2 1 1257999999999 555
Q ss_pred ccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCC
Q psy9003 1020 LKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNY 1099 (1276)
Q Consensus 1020 hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~ 1099 (1276)
++||+++|||+||++||++||+||||+|+||++.++.. +....+ ||... ....| ++.+|+
T Consensus 154 -----------~~~G~~~e~k~lV~~aH~~Gi~VilD~V~NH~~~~~~~----~~~~~~-y~~~~---~~~~w-g~~~n~ 213 (542)
T TIGR02402 154 -----------NAYGGPDDLKALVDAAHGLGLGVILDVVYNHFGPEGNY----LPRYAP-YFTDR---YSTPW-GAAINF 213 (542)
T ss_pred -----------cccCCHHHHHHHHHHHHHCCCEEEEEEccCCCCCcccc----ccccCc-cccCC---CCCCC-CCcccc
Confidence 88999999999999999999999999999999876432 112223 66532 23445 568999
Q ss_pred CcH---HHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCC
Q psy9003 1100 SEI---EVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPE 1176 (1276)
Q Consensus 1100 ~np---~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~Pd 1176 (1276)
++| +||++|+++++||++||||||||||++..|.. .++..||+++++.++++.|+
T Consensus 214 ~~~~~~~vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~~----------------------~~~~~~l~~~~~~~~~~~p~ 271 (542)
T TIGR02402 214 DGPGSDEVRRYILDNALYWLREYHFDGLRLDAVHAIAD----------------------TSAKHILEELAREVHELAAE 271 (542)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhCCcEEEEeCHHHhcc----------------------ccHHHHHHHHHHHHHHHCCC
Confidence 999 99999999999999999999999999988831 12467999999999999999
Q ss_pred ---eEEEEEccCCCCCCccccccCCcccCcccC-CC
Q psy9003 1177 ---IITIAEDVSGMPASCRPVTEGGTGFDYRLV-SL 1208 (1276)
Q Consensus 1177 ---vilIAE~~s~~p~~~~p~~~gglGFD~~~n-~l 1208 (1276)
+++|||.|...|..+.|...++.|||+.|+ .+
T Consensus 272 ~~~~~li~E~~~~~~~~~~~~~~~~~~~d~~~~~~~ 307 (542)
T TIGR02402 272 LRPVHLIAESDLNDPSLVTPREDGGYGLDAQWNDDF 307 (542)
T ss_pred CceEEEEEecCCCCCcccccccCCccceEEEECchH
Confidence 999999998888888777778899999999 44
No 19
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.7e-49 Score=478.43 Aligned_cols=304 Identities=24% Similarity=0.297 Sum_probs=236.0
Q ss_pred CCcccCeeec---CceEEEEEccCCcEEEEE-ccCCC-Ccc-ccccceecCCCeEEEEcCCCCCCCcccCcccEEEEEEE
Q psy9003 770 GTPEQLKYLV---DECHKAGLLCFMHVVCAA-GDFNN-WNR-EEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVR 843 (1276)
Q Consensus 770 Gtp~G~~y~~---D~a~FalwAP~A~~VsLv-GDFN~-wd~-~~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~ 843 (1276)
-.|.|.++.. ++++|++|+..|.+|+|+ -|... -.. +.++|..+.+.+|++.+|+...| ..|.|++.
T Consensus 17 ~~plga~~~~~~~~g~~f~l~s~~a~~v~l~l~d~~~~~~~~~~~~~~~~~G~iw~~~~p~~~~g-------~~y~yr~~ 89 (697)
T COG1523 17 PYPLGATVIDIDGDGVNFALFSSHAERVELCLFDEAGNTEEGRLYPYDGELGAIWHLWLPGAKPG-------QVYGYRVH 89 (697)
T ss_pred cccccceeeeccCcceEEeeeccccceEEEEecCcccccccccccccCCccccEEEEEcCCCcee-------eEEEEecC
Confidence 3578888744 899999999999999998 22221 111 22778777778999999988776 69999996
Q ss_pred Ee----CCeee----eecCCcceEeecCCCCC-cccc----------------ceeeCCCC--CCC-CCcCCCCCC--CC
Q psy9003 844 NQ----HGHLL----DRLSPWATYVTEPPVVG-HAYE----------------QRIWNPKP--QDK-HKWTSSKPK--KP 893 (1276)
Q Consensus 844 ~~----dG~~~----~~~DPYAkav~~~~~~s-~v~~----------------~~~~~p~~--~~~-y~W~~~rp~--~~ 893 (1276)
++ .|.++ ...||||+.+.+....+ ..+. +....|+. .+. ++|..++++ ++
T Consensus 90 g~~~~~~g~~f~~~k~l~dpya~~l~g~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~Ksvv~~~~~~w~~~~~~~~p~ 169 (697)
T COG1523 90 GPYDPEEGHRFDPNKLLLDPYAKALDGDLKWGTPALFGYYYGYQITNLSPDRDSADPYPKSVVIDPLFDWENDKPPRIPW 169 (697)
T ss_pred CCcCCccCeeeccccccccceeEEeccccccCccccccccccccccccCccccccccCCceEEeccccccccCCCCCCCc
Confidence 52 35555 46899999998765433 1110 00111221 122 789988654 45
Q ss_pred CCceEEEEecCCcc------ccCccCcHHHHHHh-hhhHHHHcCCCCCccceeecccccccccccccceeeccCcccccc
Q psy9003 894 DNLKIYESHVGICT------QEQKCASYEDFVRV-VIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEK 966 (1276)
Q Consensus 894 ~d~vIYElHVr~ft------~~~~~Gtf~gl~ek-~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~ 966 (1276)
.++||||+|||+|| ++..+|||.|+++. .|+|||+||||+ |+|||++++.+- |..
T Consensus 170 ~~~vIYE~HVr~fT~~~~~v~~~~rGTy~gl~~~~~i~yLk~LGvta----VeLLPV~~~~~~------------~~l-- 231 (697)
T COG1523 170 EDTVIYEAHVRDFTQLHPGVPEELRGTYLGLAEPVIIDYLKDLGVTA----VELLPVFDFYDE------------PHL-- 231 (697)
T ss_pred cceEEEEeeecccccCCCCCchhhccceehhccccHHHHHHHhCCce----EEEecceEEecc------------ccc--
Confidence 89999999999999 24678999999983 499999999999 999988876322 111
Q ss_pred ccccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHH
Q psy9003 967 TVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 1046 (1276)
Q Consensus 967 ~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~al 1046 (1276)
..+...|||||+|.+|| ||+++|+++. .+-+++.|||.||+++
T Consensus 232 ----~~~gl~n~WGYdP~~fF---------------------Ap~~~Yss~p------------~p~~~i~EfK~mV~~l 274 (697)
T COG1523 232 ----DKSGLNNNWGYDPLNFF---------------------APEGRYASNP------------EPATRIKEFKDMVKAL 274 (697)
T ss_pred ----cccccccccCCCccccc---------------------CCCccccCCC------------CcchHHHHHHHHHHHH
Confidence 12246799999999999 7888888742 1346789999999999
Q ss_pred HHcCCEEEEEEeccccCCcccCCC-cCCCCCCC-cccccCCCCCCCCCC--CcCCCCCcHHHHHHHHHHHHHHHHhCCCc
Q psy9003 1047 HKAGLYVLLDVVHSHASKNVLDGL-NEFDGTQA-CFFHDGPRGTHPLWD--SRLFNYSEIEVLRFLLSNLRWYLDEYQFD 1122 (1276)
Q Consensus 1047 Hk~GI~VILDvV~NHt~~~~~~~~-~~f~g~~~-~Yy~~~~~g~~~~W~--g~~LN~~np~Vr~~Iidsl~~Wv~eygVD 1122 (1276)
|++||+||||||||||++....+. .+|+++++ +||+.+++|.+.+|+ ||++|.+|||||++|+|+|+||++|||||
T Consensus 275 HkaGI~VILDVVfNHTae~~~~g~t~~f~~id~~~Yyr~~~dg~~~N~TGcGNtln~~hpmvrk~ivDsLrYWv~e~hVD 354 (697)
T COG1523 275 HKAGIEVILDVVFNHTAEGNELGPTLSFRGIDPNYYYRLDPDGYYSNGTGCGNTLNTEHPMVRKLIVDSLRYWVEEYHVD 354 (697)
T ss_pred HHcCCEEEEEEeccCcccccCcCcccccccCCcCceEEECCCCCeecCCccCcccccCChHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999998655443 68999997 677888889998887 69999999999999999999999999999
Q ss_pred EEccCCccccccc
Q psy9003 1123 GFRFDGVTSMLYH 1135 (1276)
Q Consensus 1123 GFRfD~a~~L~~~ 1135 (1276)
|||||+|+.+.+.
T Consensus 355 GFRFDLa~~l~r~ 367 (697)
T COG1523 355 GFRFDLAGVLGRE 367 (697)
T ss_pred ceeecchhhcccc
Confidence 9999999988644
No 20
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=100.00 E-value=5.4e-46 Score=478.67 Aligned_cols=382 Identities=18% Similarity=0.202 Sum_probs=273.3
Q ss_pred CCCcccCeeecCceEEEEEccCCcEEEEEccCCCCcc---ccccceecCCCeEEEEcCCCCCCCcccCcccEEEEEEEEe
Q psy9003 769 FGTPEQLKYLVDECHKAGLLCFMHVVCAAGDFNNWNR---EEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQ 845 (1276)
Q Consensus 769 ~Gtp~G~~y~~D~a~FalwAP~A~~VsLvGDFN~wd~---~~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~~ 845 (1276)
+..|.|+++..++++|+||||+|++|+|+ .|+.|+. ..++|.+..+|+|++++++...| ..|+|++.++
T Consensus 12 ~~~plGA~~~~~gv~F~v~ap~A~~V~L~-lf~~~~~~~~~~~~l~~~~g~vW~~~i~~~~~g-------~~Ygyrv~g~ 83 (1221)
T PRK14510 12 FREPLGAVPDGGGVNLALFSGAAERVEFC-LFDLWGVREEARIKLPGRTGDVWHGFIVGVGPG-------ARYGNRQEGP 83 (1221)
T ss_pred CCCCCceEEECCeEEEEEECCCCCEEEEE-EEECCCCCeeEEEECCCCcCCEEEEEEccCCCC-------cEEEEEeccC
Confidence 44689999999999999999999999998 4666643 35788777899999999987665 5999999764
Q ss_pred C----Cee----eeecCCcceEeecCCCCCc-cc------------cceeeCCCC--CCCCCcCCCCCC--CCCCceEEE
Q psy9003 846 H----GHL----LDRLSPWATYVTEPPVVGH-AY------------EQRIWNPKP--QDKHKWTSSKPK--KPDNLKIYE 900 (1276)
Q Consensus 846 d----G~~----~~~~DPYAkav~~~~~~s~-v~------------~~~~~~p~~--~~~y~W~~~rp~--~~~d~vIYE 900 (1276)
. |.+ ...+||||+.+......+. ++ ++....|+. .+.|+|..++++ .+++++|||
T Consensus 84 ~~p~~g~rf~p~~~~lDPYA~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~pk~vv~~~~~W~~~~~~~~~~~d~vIYE 163 (1221)
T PRK14510 84 GGPGEGHRFNPPKLLVDPYARPLDRPFWLHQAIFDDRFFNGDEDLTDSAVLVPKVVVPTPFTWAPRSPLHGDWDDSPLYE 163 (1221)
T ss_pred CCcccccccCCCeEeeCCCCceEeCCcccCcccccccccCCCcccccCcccCccceeecccccCCCCCCCCCcccCeEEE
Confidence 3 222 3589999999987432110 11 122233332 135899876543 568999999
Q ss_pred EecCCccc------cCccCcHHHHHH-hhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccC
Q psy9003 901 SHVGICTQ------EQKCASYEDFVR-VVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAES 973 (1276)
Q Consensus 901 lHVr~ft~------~~~~Gtf~gl~e-k~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S 973 (1276)
+|||+||. .+.+|+|+++.+ +.|||||+||||+ |||||+|++.+ +..... .+
T Consensus 164 ~hvr~ft~~~~~~gg~~~Gt~~~l~~~~~i~yLk~LGvt~----I~L~Pi~~~~~-----------~~~~~~-----~g- 222 (1221)
T PRK14510 164 MNVRGFTLRHDFFPGNLRGTFAKLAAPEAISYLKKLGVSI----VELNPIFASVD-----------EHHLPQ-----LG- 222 (1221)
T ss_pred EccchhhccCCCCCcccCcHHhhcCCchhHHHHHHcCCCE----EEeCCccccCc-----------cccccc-----cc-
Confidence 99999985 345799999882 3599999999999 99998886421 001101 11
Q ss_pred CCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCC--CHHHHHHHHHHHHHcCC
Q psy9003 974 HDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFG--TPEQLKYLVDECHKAGL 1051 (1276)
Q Consensus 974 ~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~G--t~eEfK~LV~alHk~GI 1051 (1276)
..+||||++.+|| +|+ |+|| +++|||+||++||++||
T Consensus 223 -~~~yWGY~~~~yf---------------------a~d-------------------p~yg~~~~~efk~lV~~~H~~GI 261 (1221)
T PRK14510 223 -LSNYWGYNTVAFL---------------------APD-------------------PRLAPGGEEEFAQAIKEAQSAGI 261 (1221)
T ss_pred -CcCcCCCCCCCCC---------------------CcC-------------------hhhccCcHHHHHHHHHHHHHCCC
Confidence 2478999999999 666 6777 99999999999999999
Q ss_pred EEEEEEeccccCCcccCCC-cCCCCCC-CcccccCC--CCCCCCCC--CcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEc
Q psy9003 1052 YVLLDVVHSHASKNVLDGL-NEFDGTQ-ACFFHDGP--RGTHPLWD--SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFR 1125 (1276)
Q Consensus 1052 ~VILDvV~NHt~~~~~~~~-~~f~g~~-~~Yy~~~~--~g~~~~W~--g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFR 1125 (1276)
+||||||||||+.++.++. .++.+.+ +.||+..+ .+.+.+|. ++.+|+++|+|+++|+++++||++ |||||||
T Consensus 262 ~VILDvV~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~~i~d~lr~Wv~-~gVDGfR 340 (1221)
T PRK14510 262 AVILDVVFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILRLPMDVLRSWAK-RGVDGFR 340 (1221)
T ss_pred EEEEEEccccccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHHHHHHHHHHHHH-hCCCEEE
Confidence 9999999999998865543 2455544 46776542 34455554 468899999999999999999999 9999999
Q ss_pred cCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEE-----EEEccCCCCCCccccccCCcc
Q psy9003 1126 FDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIIT-----IAEDVSGMPASCRPVTEGGTG 1200 (1276)
Q Consensus 1126 fD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~Pdvil-----IAE~~s~~p~~~~p~~~gglG 1200 (1276)
||+|..|.+. +..||+.++..++++.|+.++ |||.|...+.-. . ...
T Consensus 341 fDla~~l~r~-----------------------~~~f~~~~~~~l~ai~~d~~l~~~~ligE~Wd~~~~~~---~--~g~ 392 (1221)
T PRK14510 341 LDLADELARE-----------------------PDGFIDEFRQFLKAMDQDPVLRRLKMIAEVWDDGLGGY---Q--YGK 392 (1221)
T ss_pred EechhhhccC-----------------------ccchHHHHHHHHHHhCCCcCcccCcEEEecccCCCCcc---c--cCC
Confidence 9999988421 124899999999999999887 999886543211 1 112
Q ss_pred cC---cccC-CCccc---------hhhHHHHHHHHHHHHHhcccC---CCCCeeEeecCCCeEEE
Q psy9003 1201 FD---YRLV-SLEGS---------ALSALFDAAMNTTEERFKWLS---ADPGYVSTKHEGDKVII 1249 (1276)
Q Consensus 1201 FD---~~~n-~lEes---------aLS~~F~~~Ln~l~~~~p~L~---~~~~~~l~nHD~~RVls 1249 (1276)
|+ ..|| .+... ....+|.+.+......+|.-. ....+++.+||..|+..
T Consensus 393 f~~~~~~~N~~frd~vr~f~~g~~~~~~~~a~~l~gs~d~~~~~~~~~~~~iNfi~~HD~~rl~d 457 (1221)
T PRK14510 393 FPQYWGEWNDPLRDIMRRFWLGDIGMAGELATRLAGSADIFPHRRRNFSRSINFITAHDGFTLLD 457 (1221)
T ss_pred CCcceeeeccHHHHHHHHHhcCCCchHHHHHHHHhCcHhhcCccCCCcccceEEEeeCCchHHHH
Confidence 33 2344 22100 001456666655555555211 11236788999999665
No 21
>PRK10785 maltodextrin glucosidase; Provisional
Probab=100.00 E-value=1e-35 Score=363.02 Aligned_cols=357 Identities=13% Similarity=0.098 Sum_probs=236.8
Q ss_pred eecCceEEEEEccC---CcEEEEEccCCCCccccccceec----CCCeEEEEcCCC-CCCCcccCcccEEEEEEEEeCCe
Q psy9003 777 YLVDECHKAGLLCF---MHVVCAAGDFNNWNREEFAYKKL----DFGKWELVLPPN-PDGSCKLTHLSQVKLVVRNQHGH 848 (1276)
Q Consensus 777 y~~D~a~FalwAP~---A~~VsLvGDFN~wd~~~~pM~r~----~~GVWsl~Ip~~-~~G~~~i~hGs~YkYrV~~~dG~ 848 (1276)
+..+..++++..+. .++|.|.-...+ .....+|.+. ....|++.++.. ..+ -..|.|++... ++
T Consensus 16 ~~~~~~~~~lr~~~~~~~~~v~l~~~~~~-~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~------~~~Y~F~l~~~-~~ 87 (598)
T PRK10785 16 QSKDQLLITLWLTGEDPPQRVMLRCEPDN-EEYLLPMEKQRSQPQVTAWRASLPLNSGQP------RRRYSFKLLWH-DR 87 (598)
T ss_pred cCCCEEEEEEEEcCCCceEEEEEEEEcCC-CEEEEEeEEeecCCCceEEEEEEEcCCCCc------eEEEEEEEEeC-CE
Confidence 45677889998874 457777522211 1245788762 235799998732 222 26788888643 33
Q ss_pred eeeecCCcceEeecCCCCCccccceeeCCCCCCCCCcCCC-CCC-CCCCceEEEEecCCcccc-------C---------
Q psy9003 849 LLDRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSS-KPK-KPDNLKIYESHVGICTQE-------Q--------- 910 (1276)
Q Consensus 849 ~~~~~DPYAkav~~~~~~s~v~~~~~~~p~~~~~y~W~~~-rp~-~~~d~vIYElHVr~ft~~-------~--------- 910 (1276)
..+ +... +.+.. .|.....|++... .+| +.+++||||+.|..|... .
T Consensus 88 ~~~--------~~~~-g~~~~------~~~~~~~f~~~~~~~~P~W~~~~v~YqIfpDRF~ng~~~n~~~~~~~~~~~~~ 152 (598)
T PRK10785 88 QRW--------FTPQ-GFSRR------PPARLEQFAVDVPDQGPQWVADQVFYQIFPDRFARSLPREAVQDHVYYHHAAG 152 (598)
T ss_pred EEE--------EcCC-ceeec------cCCCccceEeeCCCCCCchhhcCEEEEechhhhcCCCcccCccCCceeeccCC
Confidence 211 1110 00000 0110011222221 223 448999999999988420 0
Q ss_pred ---------------------ccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccc
Q psy9003 911 ---------------------KCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVA 969 (1276)
Q Consensus 911 ---------------------~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~ 969 (1276)
..|+|+|++++ ||||++||||+ |||+|+| +.
T Consensus 153 ~~~~~~~w~~~~~~~~~~~~f~GGDl~GI~~k-LdYL~~LGv~~----I~L~Pif--------------------~s--- 204 (598)
T PRK10785 153 QEIILRDWDEPVTAQAGGSTFYGGDLDGISEK-LPYLKKLGVTA----LYLNPIF--------------------TA--- 204 (598)
T ss_pred CcccccCcCCCcccccccccccCcCHHHHHHH-HHHHHHcCCCE----EEeCCcc--------------------cC---
Confidence 13899999997 99999999999 9999544 21
Q ss_pred cccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHc
Q psy9003 970 YAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 1049 (1276)
Q Consensus 970 ~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~ 1049 (1276)
..+|||++.||+ + |||.||+.++|++||++||++
T Consensus 205 ------~s~hgYd~~Dy~---------------------~-------------------iDp~~Gt~~df~~Lv~~aH~r 238 (598)
T PRK10785 205 ------PSVHKYDTEDYR---------------------H-------------------VDPQLGGDAALLRLRHATQQR 238 (598)
T ss_pred ------CCCCCcCccccc---------------------c-------------------cCcccCCHHHHHHHHHHHHHC
Confidence 125788888877 3 459999999999999999999
Q ss_pred CCEEEEEEeccccCCcccCCCcC-------CCCCC---CcccccCCCCCCCCCCC----cCCCCCcHHHHHHHHH----H
Q psy9003 1050 GLYVLLDVVHSHASKNVLDGLNE-------FDGTQ---ACFFHDGPRGTHPLWDS----RLFNYSEIEVLRFLLS----N 1111 (1276)
Q Consensus 1050 GI~VILDvV~NHt~~~~~~~~~~-------f~g~~---~~Yy~~~~~g~~~~W~g----~~LN~~np~Vr~~Iid----s 1111 (1276)
||+||||+|+|||+.+++|+... +.... ..||...+++.+..|.+ ++||++||+||++|++ +
T Consensus 239 GikVilD~V~NH~~~~~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~~~~w~g~~~lPdLN~~np~v~~~l~~~~~~v 318 (598)
T PRK10785 239 GMRLVLDGVFNHTGDSHPWFDRHNRGTGGACHHPDSPWRDWYSFSDDGRALDWLGYASLPKLDFQSEEVVNEIYRGEDSI 318 (598)
T ss_pred CCEEEEEECCCcCCCCCHHHHHhhccccccccCCCCCcceeeEECCCCCcCCcCCCCcCccccCCCHHHHHHHHhhhhHH
Confidence 99999999999999988764211 11111 24665555566666763 7999999999999995 8
Q ss_pred HHHHHHh-CCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCCC
Q psy9003 1112 LRWYLDE-YQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPAS 1190 (1276)
Q Consensus 1112 l~~Wv~e-ygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~~ 1190 (1276)
+++|+++ |||||||+|+|..+... . .....+.||+++++.+++.+|++++|||.|.....
T Consensus 319 ~~~Wl~~~~giDG~RlDva~~v~~~-----~-------------~~~~~~~f~~~~~~~vk~~~pd~~ligE~~~~~~~- 379 (598)
T PRK10785 319 VRHWLKAPYNIDGWRLDVVHMLGEG-----G-------------GARNNLQHVAGITQAAKEENPEAYVLGEHFGDARQ- 379 (598)
T ss_pred HHHhhcCCCCCcEEEEecHhHhccc-----c-------------CccccHHHHHHHHHHHHhhCCCeEEEEeccCChhh-
Confidence 9999997 99999999999877311 0 01124679999999999999999999998865322
Q ss_pred ccccccCCcccCcccCC--Cc----------c-c----hh-hHHHHHHHHHHHHHhcccCCC-CCeeEeecCCCeEEEEE
Q psy9003 1191 CRPVTEGGTGFDYRLVS--LE----------G-S----AL-SALFDAAMNTTEERFKWLSAD-PGYVSTKHEGDKVIIFE 1251 (1276)
Q Consensus 1191 ~~p~~~gglGFD~~~n~--lE----------e-s----aL-S~~F~~~Ln~l~~~~p~L~~~-~~~~l~nHD~~RVlsf~ 1251 (1276)
+. .+.+||..+|. +. . . .+ ...|...+++.+..+|.-... ..+++.|||++|+++..
T Consensus 380 ---~l-~~~~~d~~mny~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~l~nHD~~R~~~~~ 455 (598)
T PRK10785 380 ---WL-QADVEDAAMNYRGFAFPLRAFLANTDIAYHPQQIDAQTCAAWMDEYRAGLPHQQQLRQFNQLDSHDTARFKTLL 455 (598)
T ss_pred ---hc-cCccccccccchhhhhHHHHHhhccccccCccCCCHHHHHHHHHHHHHhCCHHHHHHhhhccCCCccchhhhhh
Confidence 21 23344444331 10 0 0 01 156777788888877752211 22568899999999876
Q ss_pred cC
Q psy9003 1252 RA 1253 (1276)
Q Consensus 1252 R~ 1253 (1276)
.+
T Consensus 456 ~~ 457 (598)
T PRK10785 456 GG 457 (598)
T ss_pred CC
Confidence 53
No 22
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=100.00 E-value=1.3e-34 Score=355.12 Aligned_cols=164 Identities=30% Similarity=0.472 Sum_probs=151.7
Q ss_pred hcccccccCCCCCccHHHHHHHHHHHHHHHHHHhhccCchHHhhHHHhhccceEecCCcEEEEEEccCCceEEEEeecc-
Q psy9003 16 ELHKLLERDPYLNPYQYEMKRRYGLMVNFLEQFEKHEGGIEKFTTSYNKYGIHVQADNSVRCFEWAPSAQQLYLTGNVS- 94 (1276)
Q Consensus 16 ~~~~l~~~dp~L~~~~~~~~~Ry~~~~~~~~~i~~~~ggl~~Fs~~y~~fGah~~~~gg~~f~~wAP~A~~v~l~gdfn- 94 (1276)
+..+|+++||||+||+++|++||++|++++++|++.||||++||++|++||||+.. +||+||||||+|++|+|+||||
T Consensus 58 ~~~~~~~~d~~l~~~~~~~~~r~~~~~~~~~~i~~~~~~l~~f~~~y~~lGa~~~~-~g~~FrvWAP~A~~V~LvGdFN~ 136 (758)
T PLN02447 58 DGLGIYEIDPMLEPYEDHLRYRYSRYRRRREEIEKNEGGLEAFSRGYEKFGFNRSE-GGITYREWAPGAKAAALIGDFNN 136 (758)
T ss_pred CcceeeecCcchhhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHhceeEEec-CCEEEEEECCCCCEEEEEEecCC
Confidence 34689999999999999999999999999999999999999999999999999877 6899999999999999999995
Q ss_pred CCCcc--e------EEEEEccC------ccccceEEEEEecCCC---------------CCCc-----cccccc------
Q psy9003 95 LTPWS--I------MEEASLSS------IKLIQSIQYILTGVFG---------------TPEQ-----LKYLVD------ 134 (1276)
Q Consensus 95 ~~~w~--m------~~~~~~~~------~~~g~~yky~i~~~~g---------------rp~~-----as~~~d------ 134 (1276)
|+... | +|++|||+ ++.|+.|||+|.+++| +|++ +|+|+|
T Consensus 137 W~~~~~~M~~~~~GvWe~~ip~~~g~~~~~~G~~Yky~i~~~~g~~~~r~dpya~~~~~~p~~~~~~~~svv~dp~~~~~ 216 (758)
T PLN02447 137 WNPNAHWMTKNEFGVWEIFLPDADGSPAIPHGSRVKIRMETPDGRWVDRIPAWIKYAVQAPGEIGAPYNGVYWDPPEEEK 216 (758)
T ss_pred CCCCccCceeCCCCEEEEEECCccccccCCCCCEEEEEEEeCCCcEEeecCchHheeeccCCccCCCCceEEeCCCCCCC
Confidence 53333 6 99999999 9999999999999877 6776 788877
Q ss_pred -----------------cccccc------CCChHHHHHHHHHHHHhcCc------------------------------C
Q psy9003 135 -----------------ECHKAG------LFGTPEQLKYLVDECHKAGL------------------------------F 161 (1276)
Q Consensus 135 -----------------e~h~gs------~~~y~e~a~~li~y~~~~~y------------------------------y 161 (1276)
|+|+|+ +.+|+++++.++||+|++|| |
T Consensus 217 y~w~~~~~~~~~~~~IYE~Hvg~~~~~~~~gty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~ 296 (758)
T PLN02447 217 YVFKHPRPPRPAALRIYEAHVGMSSEEPKVNSYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRS 296 (758)
T ss_pred CCCCCCCCCCCCCCEEEEEeCCcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccccccc
Confidence 999998 58999999999999999999 8
Q ss_pred CCHHHHHHHHHHHHHcCCC
Q psy9003 162 GTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 162 gtp~~l~~~vd~~h~~~i~ 180 (1276)
|||+||++|||+||++||+
T Consensus 297 Gtp~dlk~LVd~aH~~GI~ 315 (758)
T PLN02447 297 GTPEDLKYLIDKAHSLGLR 315 (758)
T ss_pred CCHHHHHHHHHHHHHCCCE
Confidence 9999999999999999998
No 23
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=100.00 E-value=3.3e-33 Score=337.74 Aligned_cols=283 Identities=17% Similarity=0.186 Sum_probs=195.3
Q ss_pred CCCCceEEEEecCCccc--cCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccc
Q psy9003 892 KPDNLKIYESHVGICTQ--EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVA 969 (1276)
Q Consensus 892 ~~~d~vIYElHVr~ft~--~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~ 969 (1276)
++++++|||+++|+|++ ....|+|+|++++ ||||++||||+ |||+|+|+ .
T Consensus 1 W~~~~v~Y~i~~~~f~~~~~~~~G~~~gi~~~-l~yl~~lG~~~----i~l~Pi~~--------------------~--- 52 (543)
T TIGR02403 1 WWQKKVIYQIYPKSFYDSTGDGTGDLRGIIEK-LDYLKKLGVDY----IWLNPFYV--------------------S--- 52 (543)
T ss_pred CcccCEEEEEEhHHHhcCCCCCccCHHHHHHh-HHHHHHcCCCE----EEECCccc--------------------C---
Confidence 35789999999999975 4567999999996 99999999999 99995442 2
Q ss_pred cccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHc
Q psy9003 970 YAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 1049 (1276)
Q Consensus 970 ~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~ 1049 (1276)
+...+||++.||+ + |||+||+.++|++||++||++
T Consensus 53 -----~~~~~gY~~~d~~---------------------~-------------------id~~~Gt~~~~~~lv~~ah~~ 87 (543)
T TIGR02403 53 -----PQKDNGYDVSDYY---------------------A-------------------INPLFGTMADFEELVSEAKKR 87 (543)
T ss_pred -----CCCCCCCCccccC---------------------c-------------------cCcccCCHHHHHHHHHHHHHC
Confidence 1234689988888 3 348999999999999999999
Q ss_pred CCEEEEEEeccccCCcccCCCcCCCC--CCCcccc-cCCCCCC-C---------CCC----------------CcCCCCC
Q psy9003 1050 GLYVLLDVVHSHASKNVLDGLNEFDG--TQACFFH-DGPRGTH-P---------LWD----------------SRLFNYS 1100 (1276)
Q Consensus 1050 GI~VILDvV~NHt~~~~~~~~~~f~g--~~~~Yy~-~~~~g~~-~---------~W~----------------g~~LN~~ 1100 (1276)
||+||||+|+|||+.+++|+.....+ .-..||. .++.+.. . .|. .++||++
T Consensus 88 gi~vilD~v~NH~~~~~~~f~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdln~~ 167 (543)
T TIGR02403 88 NIKIMLDMVFNHTSTEHEWFKKALAGDSPYRDFYIWRDPKGKPPTNWQSKFGGSAWEYFGDTGQYYLHLFDKTQADLNWE 167 (543)
T ss_pred CCEEEEEECccccccchHHHHHhhcCCCcccCceEecCCCCCCCCcccccCCCcCccccCCCCceEEeccCCcCCccCCC
Confidence 99999999999999988765322222 1123332 1111110 1 121 3789999
Q ss_pred cHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCC-CccccCCCCCchHHHHHHHHHHHHHhhCCCeEE
Q psy9003 1101 EIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGH-YDEYFGLNVDTDALIYLMVANKFLHDKYPEIIT 1179 (1276)
Q Consensus 1101 np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~-~~~~~~~~~d~~a~~Fl~el~~~Vr~~~Pdvil 1179 (1276)
||+||++|.++++||++ +||||||||++.+|..... + ++.... -..++. ..++..+||+++++.+++ .|++++
T Consensus 168 np~v~~~i~~~~~~W~~-~giDGfRlDa~~~i~~~~~-~-~~~~~~~~~~~~~--~~~~~~~f~~~~~~~~~~-~~~~~l 241 (543)
T TIGR02403 168 NPEVREELKDVVNFWRD-KGVDGFRLDVINLISKDQF-F-EDDEIGDGRRFYT--DGPRVHEYLQEMNQEVFG-DNDSVT 241 (543)
T ss_pred CHHHHHHHHHHHHHHHH-cCCCEEEEeeehhhccCcc-c-CCCCCCCCccccC--CChHHHHHHHHHHHHhhc-cCCeEE
Confidence 99999999999999998 6999999999999853210 0 000000 000111 124567899999999988 899999
Q ss_pred EEEccCCCCCCccccc-cCCcccCcccCCC--c-----cch-----h-hHHHHHHHHHHHHHhcccCCCCCeeEeecCCC
Q psy9003 1180 IAEDVSGMPASCRPVT-EGGTGFDYRLVSL--E-----GSA-----L-SALFDAAMNTTEERFKWLSADPGYVSTKHEGD 1245 (1276)
Q Consensus 1180 IAE~~s~~p~~~~p~~-~gglGFD~~~n~l--E-----esa-----L-S~~F~~~Ln~l~~~~p~L~~~~~~~l~nHD~~ 1245 (1276)
|||.|...+.....+. ..+.+||+.||+- . ... . ...+...+..+.+.++....+..+++.|||++
T Consensus 242 vgE~~~~~~~~~~~y~~~~~~~~d~~~nf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~fl~NHD~~ 321 (543)
T TIGR02403 242 VGEMSSTTIENCIRYSNPENKELSMVFTFHHLKVDYPNGEKWTLAKFDFAKLKEIFSTWQTGMQAGGGWNALFWNNHDQP 321 (543)
T ss_pred EEEeCCCCHHHHHhhhCCCCCeeCeEEChhhhhchhccccccccCCCCHHHHHHHHHHHHHhccccCcceeeecCCCChh
Confidence 9999876554333332 2234566666611 0 100 1 13566666666665553234455678999999
Q ss_pred eEEEEEcC
Q psy9003 1246 KVIIFERA 1253 (1276)
Q Consensus 1246 RVlsf~R~ 1253 (1276)
|+++..++
T Consensus 322 R~~s~~g~ 329 (543)
T TIGR02403 322 RAVSRFGD 329 (543)
T ss_pred hHHHhcCC
Confidence 99886653
No 24
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=100.00 E-value=1.5e-32 Score=331.83 Aligned_cols=205 Identities=22% Similarity=0.306 Sum_probs=158.0
Q ss_pred CCCCceEEEEecCCcccc--CccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccc
Q psy9003 892 KPDNLKIYESHVGICTQE--QKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVA 969 (1276)
Q Consensus 892 ~~~d~vIYElHVr~ft~~--~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~ 969 (1276)
++++++|||++|++|++. ++.|+|+|++++ ||||++||||+ |||+|+|+ .
T Consensus 2 W~~~~viYqi~~~~f~d~~~~~~Gdl~gi~~~-Ldyl~~LGv~~----i~L~Pi~~--------------------~--- 53 (539)
T TIGR02456 2 WYKDAVFYEVHVRSFFDSNGDGIGDFPGLTSK-LDYLKWLGVDA----LWLLPFFQ--------------------S--- 53 (539)
T ss_pred ccccceEEEEehhHhhcCCCCCccCHHHHHHh-HHHHHHCCCCE----EEECCCcC--------------------C---
Confidence 457899999999999853 457999999996 99999999999 99995442 1
Q ss_pred cccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHc
Q psy9003 970 YAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 1049 (1276)
Q Consensus 970 ~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~ 1049 (1276)
+..+|||++.||+ +++ |+||+.++||+||++||++
T Consensus 54 -----~~~~~gY~~~dy~---------------------~vd-------------------~~~Gt~~df~~Lv~~ah~~ 88 (539)
T TIGR02456 54 -----PLRDDGYDVSDYR---------------------AIL-------------------PEFGTIDDFKDFVDEAHAR 88 (539)
T ss_pred -----CCCCCCCCccccc---------------------ccC-------------------hhhCCHHHHHHHHHHHHHC
Confidence 1235899999988 444 8999999999999999999
Q ss_pred CCEEEEEEeccccCCcccCCCcCCC---CCCCccccc-CCC------------CCCCCCC----------------CcCC
Q psy9003 1050 GLYVLLDVVHSHASKNVLDGLNEFD---GTQACFFHD-GPR------------GTHPLWD----------------SRLF 1097 (1276)
Q Consensus 1050 GI~VILDvV~NHt~~~~~~~~~~f~---g~~~~Yy~~-~~~------------g~~~~W~----------------g~~L 1097 (1276)
||+||||+|+||++.+++|+..... ...+.||.. +.. ....+|. .++|
T Consensus 89 Gi~vilD~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdl 168 (539)
T TIGR02456 89 GMRVIIDLVLNHTSDQHPWFQEARSNPDGPYRDFYVWSDTDEKYKDTRIIFVDTEKSNWTFDPVAKQYYWHRFFSHQPDL 168 (539)
T ss_pred CCEEEEEeccCcCCCCCHHHHHHhhCCCCCCCceEEecCCCcccccccccccccCCCCccccCCcCeeEEecccCCCCcc
Confidence 9999999999999998876432111 111234422 100 0112231 3789
Q ss_pred CCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCC-chHHHHHHHHHHHHHhhCCC
Q psy9003 1098 NYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVD-TDALIYLMVANKFLHDKYPE 1176 (1276)
Q Consensus 1098 N~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d-~~a~~Fl~el~~~Vr~~~Pd 1176 (1276)
|+++|+||++|++++++|++ +||||||||++.+|... .+ .. ..+ ++..+||+++++.+++.+|+
T Consensus 169 n~~np~vr~~l~~~~~~w~~-~GvDGfRlDav~~~~~~-~~--~~-----------~~~~p~~~~f~~~~~~~v~~~~p~ 233 (539)
T TIGR02456 169 NYDNPAVHDAVHDVMRFWLD-LGVDGFRLDAVPYLYER-EG--TS-----------CENLPETHEFLKRLRKMVDREYPG 233 (539)
T ss_pred CCCCHHHHHHHHHHHHHHHH-cCCCEEEEecHHhhhcc-CC--Cc-----------cCCCchHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999998 89999999999988422 11 00 111 23578999999999999999
Q ss_pred eEEEEEcc
Q psy9003 1177 IITIAEDV 1184 (1276)
Q Consensus 1177 vilIAE~~ 1184 (1276)
+++|||.+
T Consensus 234 ~~~iaE~~ 241 (539)
T TIGR02456 234 RMLLAEAN 241 (539)
T ss_pred eEEEEEeC
Confidence 99999974
No 25
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=100.00 E-value=3.8e-32 Score=328.85 Aligned_cols=284 Identities=17% Similarity=0.213 Sum_probs=191.5
Q ss_pred CCCCCCceEEEEecCCccc--cCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccc
Q psy9003 890 PKKPDNLKIYESHVGICTQ--EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKT 967 (1276)
Q Consensus 890 p~~~~d~vIYElHVr~ft~--~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~ 967 (1276)
|.++++.||||+++|+|.+ ....|+|+|++++ ||||++||||+ |||+|+|+ .
T Consensus 5 ~~W~~~~v~Yqi~~~~f~d~~~~~~Gdl~gi~~~-ldyl~~lGv~~----i~l~P~~~--------------------~- 58 (551)
T PRK10933 5 PHWWQNGVIYQIYPKSFQDTTGSGTGDLRGVTQR-LDYLQKLGVDA----IWLTPFYV--------------------S- 58 (551)
T ss_pred chhhhcCeEEEEEchHhhcCCCCCCcCHHHHHHh-hHHHHhCCCCE----EEECCCCC--------------------C-
Confidence 3466899999999999975 4567999999996 99999999999 99995442 1
Q ss_pred cccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHH
Q psy9003 968 VAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 1047 (1276)
Q Consensus 968 i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alH 1047 (1276)
++..|||++.||+ ++ ||+||+.++|++||++||
T Consensus 59 -------~~~~~gY~~~d~~---------------------~i-------------------d~~~Gt~~d~~~lv~~~h 91 (551)
T PRK10933 59 -------PQVDNGYDVANYT---------------------AI-------------------DPTYGTLDDFDELVAQAK 91 (551)
T ss_pred -------CCCCCCCCcccCC---------------------Cc-------------------CcccCCHHHHHHHHHHHH
Confidence 1234899999888 44 489999999999999999
Q ss_pred HcCCEEEEEEeccccCCcccCCCcCCCCCCC--ccccc--C-----CC-------CCCCCCC--------------CcCC
Q psy9003 1048 KAGLYVLLDVVHSHASKNVLDGLNEFDGTQA--CFFHD--G-----PR-------GTHPLWD--------------SRLF 1097 (1276)
Q Consensus 1048 k~GI~VILDvV~NHt~~~~~~~~~~f~g~~~--~Yy~~--~-----~~-------g~~~~W~--------------g~~L 1097 (1276)
++||+||||+|+||++.+++|+........+ .||.. + +. +....|+ .++|
T Consensus 92 ~~gi~vilD~V~NH~s~~~~wf~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdL 171 (551)
T PRK10933 92 SRGIRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYYLHLFAPEQADL 171 (551)
T ss_pred HCCCEEEEEECCCCccCchhHHHhhcCCCCCCcCceEecCCCCCCCCCcccccCCCccccccCCCCceEeecccccCCcc
Confidence 9999999999999999998775433222222 23321 1 00 0001111 3699
Q ss_pred CCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCe
Q psy9003 1098 NYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEI 1177 (1276)
Q Consensus 1098 N~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~Pdv 1177 (1276)
|++||+||++|++++++|++ +||||||+|++.+|... .++.........+++ ...++...||+++++.+. ..+++
T Consensus 172 n~~np~V~~~l~~~~~~W~~-~GvDGfRlDa~~~i~~~-~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~-~~~~~ 246 (551)
T PRK10933 172 NWENPAVRAELKKVCEFWAD-RGVDGLRLDVVNLISKD-QDFPDDLDGDGRRFY--TDGPRAHEFLQEMNRDVF-TPRGL 246 (551)
T ss_pred CCCCHHHHHHHHHHHHHHHH-CCCcEEEEcchhhcCcC-CCCCCCccccccccc--CCChHHHHHHHHHHHHhh-cccCc
Confidence 99999999999999999996 89999999999999532 111110000011111 112456789999987654 34578
Q ss_pred EEEEEccCCCCCCccccc-cCCcccCcccC--CCc-----cch--h---h-HHHHHHHHHHHHHhcccCCCCCeeEeecC
Q psy9003 1178 ITIAEDVSGMPASCRPVT-EGGTGFDYRLV--SLE-----GSA--L---S-ALFDAAMNTTEERFKWLSADPGYVSTKHE 1243 (1276)
Q Consensus 1178 ilIAE~~s~~p~~~~p~~-~gglGFD~~~n--~lE-----esa--L---S-~~F~~~Ln~l~~~~p~L~~~~~~~l~nHD 1243 (1276)
++|||.|...+..+..+. ..+..+++.|+ .+. ... + + ..+.+.+.+++...+. ..++.+++.|||
T Consensus 247 ~~vgE~~~~~~~~~~~y~~~~~~~~~~~fnf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fl~NHD 325 (551)
T PRK10933 247 MTVGEMSSTSLEHCQRYAALTGSELSMTFNFHHLKVDYPNGEKWTLAKPDFVALKTLFRHWQQGMHN-VAWNALFWCNHD 325 (551)
T ss_pred EEEEeecCCCHHHHHHhhcccCCeeeeEecHHHhhhhhccCCcccccccCHHHHHHHHHHHHHhhcc-cCeeccccCCCC
Confidence 999998865443322221 12223444444 110 000 0 1 3455666666665542 346677889999
Q ss_pred CCeEEEEEc
Q psy9003 1244 GDKVIIFER 1252 (1276)
Q Consensus 1244 ~~RVlsf~R 1252 (1276)
++|+++-.+
T Consensus 326 ~~R~~sr~g 334 (551)
T PRK10933 326 QPRIVSRFG 334 (551)
T ss_pred cccHHHHcC
Confidence 999888654
No 26
>PRK09505 malS alpha-amylase; Reviewed
Probab=99.97 E-value=5.7e-30 Score=314.30 Aligned_cols=274 Identities=16% Similarity=0.137 Sum_probs=170.5
Q ss_pred CCCCCCceEEEEecCCccccC--------------------ccCcHHHHHHhhhhHHHHcCCCCCccceeeccccccccc
Q psy9003 890 PKKPDNLKIYESHVGICTQEQ--------------------KCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDW 949 (1276)
Q Consensus 890 p~~~~d~vIYElHVr~ft~~~--------------------~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew 949 (1276)
|..|++++||++.++.|.... ..|+|+|++++ ||||++||||+ |||+|+|+-
T Consensus 184 ~~~W~~aviYqI~~DRF~nGd~~Nd~~~g~~~d~~~~~~~f~GGdl~Gi~~k-Ldyl~~LGv~a----IwlsPi~~~--- 255 (683)
T PRK09505 184 PFDWHNATVYFVLTDRFENGDPSNDHSYGRHKDGMQEIGTFHGGDLRGLTEK-LDYLQQLGVNA----LWISSPLEQ--- 255 (683)
T ss_pred ChhhccCcEEEEehhhhcCCCcccccccCcCCCCccccCcccCCCHHHHHHh-hHHHHHcCCCE----EEeCccccc---
Confidence 346789999999999995211 13999999997 99999999999 999965541
Q ss_pred ccccceeeccCccccccccccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccc-cccccc
Q psy9003 950 NMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKY-LVDECH 1028 (1276)
Q Consensus 950 ~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkY-t~D~~~ 1028 (1276)
+... ...+. +| .|.+.++|+| +.||++
T Consensus 256 -------------~~~~--~~~g~-----~g--------------------------------~~~~~~yhgY~~~D~~~ 283 (683)
T PRK09505 256 -------------IHGW--VGGGT-----KG--------------------------------DFPHYAYHGYYTLDWTK 283 (683)
T ss_pred -------------cccc--ccccc-----cc--------------------------------CCCcCCCCCCCcccccc
Confidence 0000 00000 00 0111124556 667777
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCccc------CCCcCC-------CCCCCcccc-------------
Q psy9003 1029 KAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVL------DGLNEF-------DGTQACFFH------------- 1082 (1276)
Q Consensus 1029 ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~------~~~~~f-------~g~~~~Yy~------------- 1082 (1276)
|||+||+.+|||+||++||++||+||||+|+||++.... ++...+ .+....|+.
T Consensus 284 id~~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~~~~d~~~~~f~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 363 (683)
T PRK09505 284 LDANMGTEADLRTLVDEAHQRGIRILFDVVMNHTGYATLADMQEFQFGALYLSGDENKKTLGERWSDWQPAAGQNWHSFN 363 (683)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEEECcCCCcccccccccccchhhhhhhccccccccCcccccccccccccccccc
Confidence 889999999999999999999999999999999995321 000000 000011100
Q ss_pred ----cCCCCCCCC-CC-------------------------CcCCCCC-----------------------cHHHHHHHH
Q psy9003 1083 ----DGPRGTHPL-WD-------------------------SRLFNYS-----------------------EIEVLRFLL 1109 (1276)
Q Consensus 1083 ----~~~~g~~~~-W~-------------------------g~~LN~~-----------------------np~Vr~~Ii 1109 (1276)
......... |+ -|+||.+ ||+||++|+
T Consensus 364 ~~~~~~~~~~~~~wwg~~w~~~~~~~~~~~~~~~~~~~l~~LPdl~te~~~~~~lp~f~~~~p~~~~~~~~n~~Vr~yL~ 443 (683)
T PRK09505 364 DYINFSDSTAWDKWWGKDWIRTDIGDYDNPGFDDLTMSLAFLPDIKTESTQASGLPVFYANKPDTRAKAIDGYTPRDYLT 443 (683)
T ss_pred cccccCCccccccccccccccccccccccccccccccccccCCcccccCccccccchhhhcCcccccccccCHHHHHHHH
Confidence 000001111 10 1344443 669999999
Q ss_pred HHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHH-------HhhCCC------
Q psy9003 1110 SNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFL-------HDKYPE------ 1176 (1276)
Q Consensus 1110 dsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~V-------r~~~Pd------ 1176 (1276)
+++++|+++|||||||+|++.++. ..||+++++.+ ++.+|+
T Consensus 444 ~~ik~Wv~e~GIDGfRlDaakhV~--------------------------~~FW~~~~~~~~~~l~~~k~~~~d~~~~~~ 497 (683)
T PRK09505 444 HWLSQWVRDYGIDGFRVDTAKHVE--------------------------LPAWQQLKQEASAALAEWKKANPDKALDDA 497 (683)
T ss_pred HHHHHHHHhcCCCEEEEechHhCC--------------------------HHHHHHHHHHHHHHHHHHHHhccccccccC
Confidence 999999999999999999999882 34788887666 345554
Q ss_pred -eEEEEEccCCCCCCccccccCCcccCcccC-CCccchh-hHHHHHHHHHHHHHhccc-CCCCC-eeEeecCCCeEEEEE
Q psy9003 1177 -IITIAEDVSGMPASCRPVTEGGTGFDYRLV-SLEGSAL-SALFDAAMNTTEERFKWL-SADPG-YVSTKHEGDKVIIFE 1251 (1276)
Q Consensus 1177 -vilIAE~~s~~p~~~~p~~~gglGFD~~~n-~lEesaL-S~~F~~~Ln~l~~~~p~L-~~~~~-~~l~nHD~~RVlsf~ 1251 (1276)
+++|||.|...+.. ..+. +.|||..+| .+...+. ...+...+..+.+.++.. ..... .++.|||++|+++..
T Consensus 498 ~~~~vGEvw~~~~~~-~~y~--~~~fDsv~NF~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~FLdNHDt~Rf~s~~ 574 (683)
T PRK09505 498 PFWMTGEAWGHGVMK-SDYY--RHGFDAMINFDYQEQAAKAVDCLAQMDPTYQQMAEKLQDFNVLSYLSSHDTRLFFEGG 574 (683)
T ss_pred CeEEEEEecCCchhh-HHHH--hhcCccccCchHHHHHHHHHHHHHHHHHHHHHHhhhcCccceeecccCCChhhhhhhc
Confidence 89999999765432 2222 257888777 3321111 011223344444433321 11122 367899999998866
Q ss_pred c
Q psy9003 1252 R 1252 (1276)
Q Consensus 1252 R 1252 (1276)
.
T Consensus 575 ~ 575 (683)
T PRK09505 575 Q 575 (683)
T ss_pred C
Confidence 4
No 27
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=99.97 E-value=4e-31 Score=290.46 Aligned_cols=236 Identities=21% Similarity=0.318 Sum_probs=162.9
Q ss_pred CcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCccccccccccc
Q psy9003 913 ASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKE 992 (1276)
Q Consensus 913 Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~ 992 (1276)
|+|+|++++ |||||+||||+ |||+|+ .+. + ..+|||+|.||+
T Consensus 1 Gd~~gi~~k-Ldyl~~lGv~~----I~l~Pi--------------------~~~--~------~~~~gY~~~d~~----- 42 (316)
T PF00128_consen 1 GDFRGIIDK-LDYLKDLGVNA----IWLSPI--------------------FES--P------NGYHGYDPSDYY----- 42 (316)
T ss_dssp SSHHHHHHT-HHHHHHHTESE----EEESS---------------------EES--S------SSTTTTSESEEE-----
T ss_pred CCHHHHHHh-hHHHHHcCCCc----eecccc--------------------ccc--c------cccccccceeee-----
Confidence 899999997 99999999999 999944 332 1 156999999999
Q ss_pred cccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCC--
Q psy9003 993 MYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL-- 1070 (1276)
Q Consensus 993 ~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~-- 1070 (1276)
+++ |+||+.+|||+||++||++||+||||+|+||++..+.++.
T Consensus 43 ----------------~vd-------------------~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~~~~~~~~~~ 87 (316)
T PF00128_consen 43 ----------------AVD-------------------PRFGTMEDFKELVDAAHKRGIKVILDVVPNHTSDDHPWFQDS 87 (316)
T ss_dssp ----------------EES-------------------TTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEETTSHHHHHH
T ss_pred ----------------ccc-------------------cccchhhhhhhhhhccccccceEEEeeecccccccccccccc
Confidence 444 9999999999999999999999999999999999987631
Q ss_pred -cCCCCCCCccccc-----CCCC------CCC------------CCC-CcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEc
Q psy9003 1071 -NEFDGTQACFFHD-----GPRG------THP------------LWD-SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFR 1125 (1276)
Q Consensus 1071 -~~f~g~~~~Yy~~-----~~~g------~~~------------~W~-g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFR 1125 (1276)
..+....+.||.. .+++ ... .|. .++||+++|+||++|++++++|+++ +|||||
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~i~~~~~~w~~~-giDGfR 166 (316)
T PF00128_consen 88 LNYFDNPYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVREYIIDVLKFWIEE-GIDGFR 166 (316)
T ss_dssp HTHTTSTTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTTSEEBETTSHHHHHHHHHHHHHHHHT-TESEEE
T ss_pred ccccccccccceeecccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhcccccchhhc-eEeEEE
Confidence 1122222333321 0110 011 121 3789999999999999999999995 699999
Q ss_pred cCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCCCCCccccc-cCCcccCcc
Q psy9003 1126 FDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVT-EGGTGFDYR 1204 (1276)
Q Consensus 1126 fD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~p~~~~p~~-~gglGFD~~ 1204 (1276)
||++.+|. ..||+++++.+++..|+.++|||.|.......+... .+..+.+..
T Consensus 167 ~D~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~ 220 (316)
T PF00128_consen 167 LDAAKHIP--------------------------KEFWKEFRDEVKEEKPDFFLIGEVWGGDNEDLRQYAYDGYFDLDSV 220 (316)
T ss_dssp ETTGGGSS--------------------------HHHHHHHHHHHHHHHTTSEEEEEESSSSHHHHHHHHHHGTTSHSEE
T ss_pred Eccccccc--------------------------hhhHHHHhhhhhhhccccceeeeeccCCccccchhhhccccccchh
Confidence 99999883 259999999999999999999998876543221111 111121111
Q ss_pred cC----CCccc--------hh-hHHHHHHHHHHHHHhcccCCCCCeeEeecCCCeEEE
Q psy9003 1205 LV----SLEGS--------AL-SALFDAAMNTTEERFKWLSADPGYVSTKHEGDKVII 1249 (1276)
Q Consensus 1205 ~n----~lEes--------aL-S~~F~~~Ln~l~~~~p~L~~~~~~~l~nHD~~RVls 1249 (1276)
++ .+..+ .. ...+...+......++. .....+++.|||++|+.+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~f~~nHD~~r~~~ 277 (316)
T PF00128_consen 221 FDFPDYGLRSSFFDFWRHGDGDASDLANWLSSWQSSYPD-PYRAVNFLENHDTPRFAS 277 (316)
T ss_dssp EHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHHSTT-GGGEEEESSHTTSSTHHH
T ss_pred hcccccccccchhhhhccccchhhhhhhhhhhhhhhhcc-cceeeecccccccccchh
Confidence 11 00000 00 13445555555555553 223346678999999644
No 28
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=99.96 E-value=4e-29 Score=298.36 Aligned_cols=206 Identities=21% Similarity=0.299 Sum_probs=147.5
Q ss_pred CcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCccccccccccc
Q psy9003 913 ASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKE 992 (1276)
Q Consensus 913 Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~ 992 (1276)
.+|++++++ ||||++||||+ |||+|++ +. + + ...+|||++.|||
T Consensus 19 ~~~~~I~~k-ldyl~~LGvta----Iwl~P~~--------------------~~--~---~-~~~~hgY~~~D~~----- 62 (479)
T PRK09441 19 KLWNRLAER-APELAEAGITA----VWLPPAY--------------------KG--T---S-GGYDVGYGVYDLF----- 62 (479)
T ss_pred cHHHHHHHH-HHHHHHcCCCE----EEeCCCc--------------------cC--C---C-CCCCCCCCeeccc-----
Confidence 467899997 99999999999 9999544 32 1 1 2356999999999
Q ss_pred cccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCccc--CCC
Q psy9003 993 MYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVL--DGL 1070 (1276)
Q Consensus 993 ~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~--~~~ 1070 (1276)
... .|..+ -+|||+||+.+|||+||++||++||+||+|+|+||++.... |+.
T Consensus 63 ----------------~~~-~~~~~---------~~id~~fGt~~dl~~Li~~~H~~Gi~vi~D~V~NH~~~~~~~~~~~ 116 (479)
T PRK09441 63 ----------------DLG-EFDQK---------GTVRTKYGTKEELLNAIDALHENGIKVYADVVLNHKAGADEKETFR 116 (479)
T ss_pred ----------------ccc-ccccc---------CCcCcCcCCHHHHHHHHHHHHHCCCEEEEEECcccccCCCcceeee
Confidence 221 01100 14789999999999999999999999999999999986432 211
Q ss_pred ----------------------cCC--CCCCC-------cccccCCC---------------CCCCCCC-----------
Q psy9003 1071 ----------------------NEF--DGTQA-------CFFHDGPR---------------GTHPLWD----------- 1093 (1276)
Q Consensus 1071 ----------------------~~f--~g~~~-------~Yy~~~~~---------------g~~~~W~----------- 1093 (1276)
..| .+..+ .|+...+. +....|.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 196 (479)
T PRK09441 117 VVEVDPDDRTQIISEPYEIEGWTRFTFPGRGGKYSDFKWHWYHFSGTDYDENPDESGIFKIVGDGKGWDDQVDDENGNFD 196 (479)
T ss_pred eeeeCccccccccCCceeecccccccCCCCCCcCCcceeCCcCCCCcccccccCcCceEEecCCCCCCccccccccCCcc
Confidence 001 11100 12221110 0112342
Q ss_pred ---CcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHH
Q psy9003 1094 ---SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFL 1170 (1276)
Q Consensus 1094 ---g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~V 1170 (1276)
.++||++||+||++|++++++|++++||||||+|++.+|. ..||+.+.+.+
T Consensus 197 ~~~lpDLn~~np~V~~~l~~~~~~w~~~~giDGfRlDavk~v~--------------------------~~f~~~~~~~~ 250 (479)
T PRK09441 197 YLMGADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVKHID--------------------------AWFIKEWIEHV 250 (479)
T ss_pred cccccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCCC--------------------------HHHHHHHHHHH
Confidence 3699999999999999999999999999999999999882 34899999999
Q ss_pred HhhC-CCeEEEEEccCCCCCCccccccC----CcccCcccC
Q psy9003 1171 HDKY-PEIITIAEDVSGMPASCRPVTEG----GTGFDYRLV 1206 (1276)
Q Consensus 1171 r~~~-PdvilIAE~~s~~p~~~~p~~~g----glGFD~~~n 1206 (1276)
++.. |++++|||.|.+.+.....+..+ ...|||.++
T Consensus 251 ~~~~~~~~~~vGE~~~~~~~~~~~y~~~~~~~~~~~Df~~~ 291 (479)
T PRK09441 251 REVAGKDLFIVGEYWSHDVDKLQDYLEQVEGKTDLFDVPLH 291 (479)
T ss_pred HHhcCCCeEEEEeecCCChHHHHHHHHhcCCCceEecHHHH
Confidence 8776 69999999998876544444321 235776655
No 29
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=99.96 E-value=4.4e-29 Score=300.61 Aligned_cols=122 Identities=30% Similarity=0.429 Sum_probs=114.1
Q ss_pred hHHHhhccceEecCC--cEEEEEEccCCceEEEEeecc-CCCcce---------EEEEEccCccccceEEEEEecCCC--
Q psy9003 59 TTSYNKYGIHVQADN--SVRCFEWAPSAQQLYLTGNVS-LTPWSI---------MEEASLSSIKLIQSIQYILTGVFG-- 124 (1276)
Q Consensus 59 s~~y~~fGah~~~~g--g~~f~~wAP~A~~v~l~gdfn-~~~w~m---------~~~~~~~~~~~g~~yky~i~~~~g-- 124 (1276)
.+.|+.||||..+.| |++|++|||+|+.|+|+|||| |....| +|++|||++.+|+.|||+|.+.+|
T Consensus 20 ~~~~~~~GA~~~~~g~~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~~~~G~we~~vp~~~~G~~Yky~l~~~~g~~ 99 (628)
T COG0296 20 LRLYEKLGAHPIENGVSGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDRKESGIWELFVPGAPPGTRYKYELIDPSGQL 99 (628)
T ss_pred hhhHhhhCcccccCCCCceEEEEECCCCCeEEEEeecCCccceecccccCCCCceEEEeccCCCCCCeEEEEEeCCCCce
Confidence 367999999977757 899999999999999999995 555444 999999999999999999999998
Q ss_pred -------------CCCccccccc--------------------------ccccccC-----CChHHHHHHHHHHHHhcCc
Q psy9003 125 -------------TPEQLKYLVD--------------------------ECHKAGL-----FGTPEQLKYLVDECHKAGL 160 (1276)
Q Consensus 125 -------------rp~~as~~~d--------------------------e~h~gs~-----~~y~e~a~~li~y~~~~~y 160 (1276)
||.|||+|+| |+|+||| ++|.|+|++|+||||||||
T Consensus 100 ~~~~DP~a~~~~~~p~~aS~v~~~~~y~W~d~~~~~~~~~~~~e~~vIYElHvGs~~~~~~~~~~e~a~~llpYl~elG~ 179 (628)
T COG0296 100 RLKADPYARRQEVGPHTASQVVDLPDYEWQDERWDRAWRGRFWEPIVIYELHVGSFTPDRFLGYFELAIELLPYLKELGI 179 (628)
T ss_pred eeccCchhhccCCCCCCcceecCCCCcccccccccccccCCCCCCceEEEEEeeeccCCCCcCHHHHHHHHhHHHHHhCC
Confidence 9999999999 9999998 8999999999999999999
Q ss_pred ------------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 161 ------------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 161 ------------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
||||+|||+|||+|||+||-
T Consensus 180 T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIg 229 (628)
T COG0296 180 THIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIG 229 (628)
T ss_pred CEEEEcccccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCE
Confidence 99999999999999999996
No 30
>PLN00196 alpha-amylase; Provisional
Probab=99.93 E-value=1.1e-25 Score=264.89 Aligned_cols=186 Identities=19% Similarity=0.214 Sum_probs=133.2
Q ss_pred CceEEEEecC-CccccCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccC
Q psy9003 895 NLKIYESHVG-ICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAES 973 (1276)
Q Consensus 895 d~vIYElHVr-~ft~~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S 973 (1276)
+-+|.|.+-- ++ ....|.|++++++ ||||++||||+ |||+|++ +.
T Consensus 24 ~~v~~Q~F~W~~~--~~~gg~~~~i~~k-ldyL~~LGvta----IWL~P~~--------------------~s------- 69 (428)
T PLN00196 24 GQVLFQGFNWESW--KQNGGWYNFLMGK-VDDIAAAGITH----VWLPPPS--------------------HS------- 69 (428)
T ss_pred CCEEEEeeccCCC--CCCCcCHHHHHHH-HHHHHHcCCCE----EEeCCCC--------------------CC-------
Confidence 4466665441 12 2345789999986 99999999999 9999433 21
Q ss_pred CCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccC-CCCCCHHHHHHHHHHHHHcCCE
Q psy9003 974 HDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLY 1052 (1276)
Q Consensus 974 ~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID-~~~Gt~eEfK~LV~alHk~GI~ 1052 (1276)
..++||+|.||| . +| ++||+.+|||+||++||++||+
T Consensus 70 --~s~hGY~~~D~y---------------------~-------------------ld~~~fGt~~elk~Lv~~aH~~GIk 107 (428)
T PLN00196 70 --VSEQGYMPGRLY---------------------D-------------------LDASKYGNEAQLKSLIEAFHGKGVQ 107 (428)
T ss_pred --CCCCCCCccccC---------------------C-------------------CCcccCCCHHHHHHHHHHHHHCCCE
Confidence 124789888888 2 33 5899999999999999999999
Q ss_pred EEEEEeccccCCcccCCC---cCCCCCC----Cccccc----C------CCCCCCCC----CCcCCCCCcHHHHHHHHHH
Q psy9003 1053 VLLDVVHSHASKNVLDGL---NEFDGTQ----ACFFHD----G------PRGTHPLW----DSRLFNYSEIEVLRFLLSN 1111 (1276)
Q Consensus 1053 VILDvV~NHt~~~~~~~~---~~f~g~~----~~Yy~~----~------~~g~~~~W----~g~~LN~~np~Vr~~Iids 1111 (1276)
||+|+|+||++.++..+. ..|.+.. ..||.. + ..+.+..| ..++||++||+||++|+++
T Consensus 108 VilDvV~NH~~~~~~~~~~~y~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~ 187 (428)
T PLN00196 108 VIADIVINHRTAEHKDGRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGADFAAAPDIDHLNKRVQRELIGW 187 (428)
T ss_pred EEEEECccCcccccccCCCceEECCCCCCCCccccccccCCCCcccccCCCCceeCCCCCCCCCccCCCCHHHHHHHHHH
Confidence 999999999997654321 1122211 123211 0 01111111 1489999999999999999
Q ss_pred HHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCC
Q psy9003 1112 LRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSG 1186 (1276)
Q Consensus 1112 l~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~ 1186 (1276)
++||++++||||||||++.++. ..|++++ +++.+| .++|||.|.+
T Consensus 188 ~~wl~~~~GiDG~RlD~ak~~~--------------------------~~f~~~~---v~~~~p-~f~VGE~W~~ 232 (428)
T PLN00196 188 LLWLKSDIGFDAWRLDFAKGYS--------------------------AEVAKVY---IDGTEP-SFAVAEIWTS 232 (428)
T ss_pred HHHHhhCCCCCEEEeehhhhCC--------------------------HHHHHHH---HHccCC-cEEEEEEecc
Confidence 9999889999999999998772 2366654 556667 7899999976
No 31
>PRK14705 glycogen branching enzyme; Provisional
Probab=99.93 E-value=8.9e-26 Score=288.51 Aligned_cols=123 Identities=27% Similarity=0.441 Sum_probs=112.2
Q ss_pred hhHHHhhccceEec-C----C--cEEEEEEccCCceEEEEeecc-CCCcc--e-------EEEEEccCccccceEEEEEe
Q psy9003 58 FTTSYNKYGIHVQA-D----N--SVRCFEWAPSAQQLYLTGNVS-LTPWS--I-------MEEASLSSIKLIQSIQYILT 120 (1276)
Q Consensus 58 Fs~~y~~fGah~~~-~----g--g~~f~~wAP~A~~v~l~gdfn-~~~w~--m-------~~~~~~~~~~~g~~yky~i~ 120 (1276)
-.++|++||||+.. + | ||+|+||||+|++|+|+|||| |+.-. | ||++|||++++|+.|||+|.
T Consensus 616 ~~~~y~~lGah~~~~~~~~~~~~Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~~~~GvW~~fipg~~~G~~Yky~i~ 695 (1224)
T PRK14705 616 HEKLWDVLGAHVQHYKSSLGDVDGVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSLGSSGVWELFIPGVVAGACYKFEIL 695 (1224)
T ss_pred hhhHHHhcCCeEeeccCccCCCCeEEEEEECCCCCEEEEEEEecCCCCCcccceECCCCCEEEEEECCCCCCCEEEEEEE
Confidence 34789999999765 3 4 999999999999999999995 43322 5 99999999999999999999
Q ss_pred cCCC---------------CCCccccccc---------------------------ccccccC---CChHHHHHHHHHHH
Q psy9003 121 GVFG---------------TPEQLKYLVD---------------------------ECHKAGL---FGTPEQLKYLVDEC 155 (1276)
Q Consensus 121 ~~~g---------------rp~~as~~~d---------------------------e~h~gs~---~~y~e~a~~li~y~ 155 (1276)
+.+| +|.+||+|+| |+|+||| ++|+|++++||||+
T Consensus 696 ~~~g~~~~k~DPyA~~~e~~p~~aS~V~d~~~~w~d~~W~~~r~~~~~~~~p~~IYEvHvgsf~~~~~~~~l~~~lldYl 775 (1224)
T PRK14705 696 TKAGQWVEKADPLAFGTEVPPLTASRVVEASYAFKDAEWMSARAERDPHNSPMSVYEVHLGSWRLGLGYRELAKELVDYV 775 (1224)
T ss_pred cCCCcEEecCCccccccccCCCCCeEEeCCCCCcCChhhhhccccCCCCcCCcEEEEEEecccccCCchHHHHHHHHHHH
Confidence 9877 8999999998 9999996 79999999999999
Q ss_pred HhcCc------------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 156 HKAGL------------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 156 ~~~~y------------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
|+||| ||||+|||+|||+||++||.
T Consensus 776 k~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~ 830 (1224)
T PRK14705 776 KWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIG 830 (1224)
T ss_pred HHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCE
Confidence 99999 99999999999999999998
No 32
>PRK12568 glycogen branching enzyme; Provisional
Probab=99.93 E-value=1.1e-25 Score=276.40 Aligned_cols=120 Identities=25% Similarity=0.453 Sum_probs=111.6
Q ss_pred hHHHhhccceEec-CC--cEEEEEEccCCceEEEEeeccCCCcc-----e------EEEEEccCccccceEEEEEecCCC
Q psy9003 59 TTSYNKYGIHVQA-DN--SVRCFEWAPSAQQLYLTGNVSLTPWS-----I------MEEASLSSIKLIQSIQYILTGVFG 124 (1276)
Q Consensus 59 s~~y~~fGah~~~-~g--g~~f~~wAP~A~~v~l~gdfn~~~w~-----m------~~~~~~~~~~~g~~yky~i~~~~g 124 (1276)
.++|++||||+.. +| ||+|+||||+|++|+|+||| |+|+ | ||++|||++++|+.|||+|.+.+|
T Consensus 121 ~~~y~~lGah~~~~~g~~Gv~FaVWAPnA~~VsVvGDF--N~Wdg~~~pM~~~~~GVWelfipg~~~G~~YKYeI~~~~G 198 (730)
T PRK12568 121 QALRRALGAQHVQVGEVPGVRFAVWAPHAQRVAVVGDF--NGWDVRRHPMRQRIGGFWELFLPRVEAGARYKYAITAADG 198 (730)
T ss_pred hhhHHhcCCeEeeECCCCcEEEEEECCCCCEEEEEEec--CCCCccceecccCCCCEEEEEECCCCCCCEEEEEEEcCCC
Confidence 4799999999776 66 99999999999999999999 5555 6 999999999999999999998877
Q ss_pred ---------------CCCccccccc---------------------------cccccc--------CCChHHHHHHHHHH
Q psy9003 125 ---------------TPEQLKYLVD---------------------------ECHKAG--------LFGTPEQLKYLVDE 154 (1276)
Q Consensus 125 ---------------rp~~as~~~d---------------------------e~h~gs--------~~~y~e~a~~li~y 154 (1276)
||.|||+|.| |||+|| +++|+++|++||||
T Consensus 199 ~~~~k~DPYA~~~e~~p~~asvV~~~~~~~W~d~~W~~~r~~~~~~~~~~IYEvHvgsf~~~~~~~~~~~~~la~~ll~y 278 (730)
T PRK12568 199 RVLLKADPVARQTELPPATASVVPSAAAFAWTDAAWMARRDPAAVPAPLSIYEVHAASWRRDGHNQPLDWPTLAEQLIPY 278 (730)
T ss_pred eEeecCCCcceEeecCCCCCeEEcCCCCCCCCChhhhhcccccCCCCCcEEEEEEhHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 8999999986 999999 57899999999999
Q ss_pred HHhcCc------------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 155 CHKAGL------------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 155 ~~~~~y------------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
||++|+ ||||+||++|||+||++||+
T Consensus 279 lk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~ 334 (730)
T PRK12568 279 VQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHGSPDGFAQFVDACHRAGIG 334 (730)
T ss_pred HHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcccCCHHHHHHHHHHHHHCCCE
Confidence 999999 89999999999999999998
No 33
>PLN02361 alpha-amylase
Probab=99.92 E-value=9.6e-25 Score=254.83 Aligned_cols=169 Identities=17% Similarity=0.257 Sum_probs=124.5
Q ss_pred cHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCcccccccccccc
Q psy9003 914 SYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEM 993 (1276)
Q Consensus 914 tf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~ 993 (1276)
-|++++++ ||||++||||+ |||+|++ +. ..++||+|.|||
T Consensus 27 ~w~~i~~k-l~~l~~lG~t~----iwl~P~~--------------------~~---------~~~~GY~~~d~y------ 66 (401)
T PLN02361 27 WWRNLEGK-VPDLAKSGFTS----AWLPPPS--------------------QS---------LAPEGYLPQNLY------ 66 (401)
T ss_pred HHHHHHHH-HHHHHHcCCCE----EEeCCCC--------------------cC---------CCCCCCCccccc------
Confidence 67899986 99999999999 9999433 21 123799998888
Q ss_pred ccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccC--C-C
Q psy9003 994 YTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLD--G-L 1070 (1276)
Q Consensus 994 y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~--~-~ 1070 (1276)
.+ |++||+.+||++||++||++||+||+|+|+||++..... + .
T Consensus 67 ---------------~~-------------------~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH~~g~~~~~~~~y 112 (401)
T PLN02361 67 ---------------SL-------------------NSAYGSEHLLKSLLRKMKQYNVRAMADIVINHRVGTTQGHGGMY 112 (401)
T ss_pred ---------------cc-------------------CcccCCHHHHHHHHHHHHHcCCEEEEEEccccccCCCCCCCCCc
Confidence 33 389999999999999999999999999999999643211 1 1
Q ss_pred cCCCCCCCccc-----cc-CCCCCCC---CCC-CcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCC
Q psy9003 1071 NEFDGTQACFF-----HD-GPRGTHP---LWD-SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCG 1140 (1276)
Q Consensus 1071 ~~f~g~~~~Yy-----~~-~~~g~~~---~W~-g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g 1140 (1276)
..|.+....|. .. ...+... ++. .++||++||.||++|++++++|++++||||||+|++.++.
T Consensus 113 ~~~~g~~~~wd~~~~~~~~~g~~~~~~~~~~~~lpDLd~~np~Vr~~l~~~~~wl~~~~GiDGfRlDavk~~~------- 185 (401)
T PLN02361 113 NRYDGIPLPWDEHAVTSCTGGLGNRSTGDNFNGVPNIDHTQHFVRKDIIGWLIWLRNDVGFQDFRFDFAKGYS------- 185 (401)
T ss_pred ccCCCCcCCCCccccccccCCCCCccCCCCCccCCccCCCCHHHHHHHHHHHHHHHhcCCCCEEEEeccccCC-------
Confidence 12333211111 11 0001111 111 4899999999999999999877778999999999999882
Q ss_pred CCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCC
Q psy9003 1141 EGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSG 1186 (1276)
Q Consensus 1141 ~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~ 1186 (1276)
..||+++.+.+ .| .+++||.|.+
T Consensus 186 -------------------~~f~~~~~~~~---~p-~f~VGE~w~~ 208 (401)
T PLN02361 186 -------------------AKFVKEYIEAA---KP-LFSVGEYWDS 208 (401)
T ss_pred -------------------HHHHHHHHHhh---CC-eEEEEEEecC
Confidence 34888886543 45 8899999976
No 34
>PRK14706 glycogen branching enzyme; Provisional
Probab=99.90 E-value=6.2e-24 Score=260.66 Aligned_cols=122 Identities=25% Similarity=0.409 Sum_probs=111.2
Q ss_pred hHHHhhccceEec-CC--cEEEEEEccCCceEEEEeecc-CCCcc--e------EEEEEccCccccceEEEEEecCCC--
Q psy9003 59 TTSYNKYGIHVQA-DN--SVRCFEWAPSAQQLYLTGNVS-LTPWS--I------MEEASLSSIKLIQSIQYILTGVFG-- 124 (1276)
Q Consensus 59 s~~y~~fGah~~~-~g--g~~f~~wAP~A~~v~l~gdfn-~~~w~--m------~~~~~~~~~~~g~~yky~i~~~~g-- 124 (1276)
.+.|++||||+.. +| |++||||||+|++|+|+|||| |+... | +|++|||+++.|+.|||+|.+++|
T Consensus 21 ~~~~~~lGah~~~~~~~~Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~~~GvW~~~vpg~~~g~~Yky~I~~~~g~~ 100 (639)
T PRK14706 21 VRPDHLLGAHPATEGGVEGVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRLDFGFWGAFVPGARPGQRYKFRVTGAAGQT 100 (639)
T ss_pred cchhHhcCccCccCCCcccEEEEEECCCCCEEEEEEecCCcccccccccccCCCEEEEEECCCCCCCEEEEEEECCCCCE
Confidence 3689999999777 45 899999999999999999995 53333 5 999999999999999999999876
Q ss_pred -------------CCCccccccc-------------------------cccccc--------CCChHHHHHHHHHHHHhc
Q psy9003 125 -------------TPEQLKYLVD-------------------------ECHKAG--------LFGTPEQLKYLVDECHKA 158 (1276)
Q Consensus 125 -------------rp~~as~~~d-------------------------e~h~gs--------~~~y~e~a~~li~y~~~~ 158 (1276)
+|++||+|+| |||+|| |+||+|++++||||+|+|
T Consensus 101 ~~~~DPYa~~~~~~~~~~svv~~~~~~w~d~~w~~~~~~~~~~~~~IYE~Hvg~f~~~~~g~~~ty~~~~~~l~~ylk~l 180 (639)
T PRK14706 101 VDKMDPYGSFFEVRPNTASIIWEDRFEWTDTRWMSSRTAGFDQPISIYEVHVGSWARRDDGWFLNYRELAHRLGEYVTYM 180 (639)
T ss_pred EeccCcceEEEecCCCCceEECCCCCCCCCcccccccCCccCCCcEEEEEehhhcccCCCCCccCHHHHHHHHHHHHHHc
Confidence 8999999965 999999 479999999999999999
Q ss_pred Cc------------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 159 GL------------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 159 ~y------------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
|| ||||+||++|||+||++||+
T Consensus 181 G~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~ 232 (639)
T PRK14706 181 GYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIG 232 (639)
T ss_pred CCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCE
Confidence 99 99999999999999999998
No 35
>PLN02960 alpha-amylase
Probab=99.90 E-value=1.5e-23 Score=258.44 Aligned_cols=68 Identities=19% Similarity=0.399 Sum_probs=64.9
Q ss_pred CCccHHHHHHHHHHHHHHHHHHhhccCchHHhhHHHhhccceEecCCcEEEEEEccCCceEEEEeecc
Q psy9003 27 LNPYQYEMKRRYGLMVNFLEQFEKHEGGIEKFTTSYNKYGIHVQADNSVRCFEWAPSAQQLYLTGNVS 94 (1276)
Q Consensus 27 L~~~~~~~~~Ry~~~~~~~~~i~~~~ggl~~Fs~~y~~fGah~~~~gg~~f~~wAP~A~~v~l~gdfn 94 (1276)
-+-|+..++.||+.+++.+.+|.+++|||+.||++|++||+|+....||+|+||||+|+.++|+||||
T Consensus 82 ~~~f~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~~~~~~~~~~~~wap~a~~~~~~gdfn 149 (897)
T PLN02960 82 DRAFAQFLRERHKALKDLKWEIFKRHIDLKEFASGFELLGMHRHPEHRVDFMEWAPGARYCSLVGDFN 149 (897)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHhhHHHHhccccCcccCeEEEEEcCCceeEEEeeccc
Confidence 36799999999999999999999999999999999999999999965799999999999999999995
No 36
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=99.90 E-value=9.9e-23 Score=241.31 Aligned_cols=164 Identities=24% Similarity=0.311 Sum_probs=126.4
Q ss_pred ceEEEEecCCcccc--------CccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccc
Q psy9003 896 LKIYESHVGICTQE--------QKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKT 967 (1276)
Q Consensus 896 ~vIYElHVr~ft~~--------~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~ 967 (1276)
++||++.++.|... .+.|+++|++++ ||||++|||++ |||+|+|+ .
T Consensus 1 ~viyqi~~~~f~d~~~~~~~~~~G~Gdl~Gi~~~-LdYl~~LGv~a----iwl~Pi~~--------------------s- 54 (505)
T COG0366 1 AVIYQIYPDRFADSNGSNGPDYDGGGDLKGITEK-LDYLKELGVDA----IWLSPIFE--------------------S- 54 (505)
T ss_pred CcEEEEechhhcCCCCCCccCCCCcccHHhHHHh-hhHHHHhCCCE----EEeCCCCC--------------------C-
Confidence 48999999999753 235999999986 99999999999 99995543 1
Q ss_pred cccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHH
Q psy9003 968 VAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 1047 (1276)
Q Consensus 968 i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alH 1047 (1276)
...+.||++.||+ +|||.+|+.++|++||+++|
T Consensus 55 -------~~~~~gY~~~Dy~----------------------------------------~id~~~Gt~~d~~~li~~~H 87 (505)
T COG0366 55 -------PQADHGYDVSDYT----------------------------------------KVDPHFGTEEDFKELVEEAH 87 (505)
T ss_pred -------CccCCCccccchh----------------------------------------hcCcccCCHHHHHHHHHHHH
Confidence 1345677777776 45589999999999999999
Q ss_pred HcCCEEEEEEeccccCCcccCCCcCCCCCC----Cccccc-C-------C-----CCCCCCCC---------------Cc
Q psy9003 1048 KAGLYVLLDVVHSHASKNVLDGLNEFDGTQ----ACFFHD-G-------P-----RGTHPLWD---------------SR 1095 (1276)
Q Consensus 1048 k~GI~VILDvV~NHt~~~~~~~~~~f~g~~----~~Yy~~-~-------~-----~g~~~~W~---------------g~ 1095 (1276)
++||+||||+|+||++..++|+........ ..||.. . + ......|. .+
T Consensus 88 ~~gi~vi~D~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (505)
T COG0366 88 KRGIKVILDLVFNHTSDEHPWFKEARSSKPNPKRSDYYIWRDPDPDGTPPNNWFSVFGGDAWTWGNTGEYYLHLFSSEQP 167 (505)
T ss_pred HCCCEEEEEeccCcCCCccHHHHHHhcCCCCcccCCCceEccCcccCCCCCcchhhcCCCCCCcCCCCceEEEecCCCCC
Confidence 999999999999999999977542221111 133321 0 0 00011221 26
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccc
Q psy9003 1096 LFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSML 1133 (1276)
Q Consensus 1096 ~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~ 1133 (1276)
+||+.+|+||+.+.++++||++ +||||||+|++.++.
T Consensus 168 dln~~n~~v~~~~~~~~~~W~~-~gvDGfRlDa~~~~~ 204 (505)
T COG0366 168 DLNWENPEVREELLDVVKFWLD-KGVDGFRLDAAKHIS 204 (505)
T ss_pred CcCCCCHHHHHHHHHHHHHHHH-cCCCeEEeccHhhhc
Confidence 7999999999999999999999 799999999999984
No 37
>PLN02784 alpha-amylase
Probab=99.89 E-value=2e-22 Score=247.53 Aligned_cols=188 Identities=21% Similarity=0.263 Sum_probs=133.2
Q ss_pred CCceEEEEecCCcc-c-cCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccc
Q psy9003 894 DNLKIYESHVGICT-Q-EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYA 971 (1276)
Q Consensus 894 ~d~vIYElHVr~ft-~-~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~ 971 (1276)
.....|++.+..|. . .....-|++++++ +|||++||||+ |||+|. .+.
T Consensus 497 ~~~~~~eVmlQgF~Wds~~dg~w~~~I~ek-ldyL~~LG~ta----IWLpP~--------------------~~s----- 546 (894)
T PLN02784 497 GTGSGFEILCQGFNWESHKSGRWYMELGEK-AAELSSLGFTV----VWLPPP--------------------TES----- 546 (894)
T ss_pred cccCCceEEEEeEEcCcCCCCchHHHHHHH-HHHHHHhCCCE----EEeCCC--------------------CCC-----
Confidence 35668888888875 1 1122237899886 99999999999 999943 321
Q ss_pred cCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCC
Q psy9003 972 ESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 1051 (1276)
Q Consensus 972 ~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI 1051 (1276)
..++||+|.||| .++ ++||+.+||++||++||++||
T Consensus 547 ----~s~~GY~p~D~y---------------------~ld-------------------s~yGT~~ELk~LI~a~H~~GI 582 (894)
T PLN02784 547 ----VSPEGYMPKDLY---------------------NLN-------------------SRYGTIDELKDLVKSFHEVGI 582 (894)
T ss_pred ----CCCCCcCccccc---------------------ccC-------------------cCcCCHHHHHHHHHHHHHCCC
Confidence 134899999999 343 899999999999999999999
Q ss_pred EEEEEEeccccCCcccC--CC-cCCCCCCCccccc-----CC----CCC---CCCCC-CcCCCCCcHHHHHHHHHHHHHH
Q psy9003 1052 YVLLDVVHSHASKNVLD--GL-NEFDGTQACFFHD-----GP----RGT---HPLWD-SRLFNYSEIEVLRFLLSNLRWY 1115 (1276)
Q Consensus 1052 ~VILDvV~NHt~~~~~~--~~-~~f~g~~~~Yy~~-----~~----~g~---~~~W~-g~~LN~~np~Vr~~Iidsl~~W 1115 (1276)
+||+|+|+||++..+.. +. ..|.+.. .|... ++ .|. ..+|. .++||++||.||+.|.++++||
T Consensus 583 kVIlDiViNH~ag~f~~~~g~~~~f~g~~-dW~d~~i~~ddp~F~GrG~~~sgddf~~lPDLDh~npeVR~eL~~WlkWL 661 (894)
T PLN02784 583 KVLGDAVLNHRCAHFQNQNGVWNIFGGRL-NWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDLKEWLCWM 661 (894)
T ss_pred EEEEEECcccccccccCCCCcccccCCee-cCCCCcccCCCcccCCcCCcCcccccCcCCcCCCCCHHHHHHHHHHHHHH
Confidence 99999999999865321 11 1122110 01000 00 000 11122 4899999999999999999999
Q ss_pred HHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCC
Q psy9003 1116 LDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSG 1186 (1276)
Q Consensus 1116 v~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~ 1186 (1276)
++++||||||||++.++. ..|+++. +++..| .++|||.|.+
T Consensus 662 ~~e~G~DGfRLDaVKgf~--------------------------~~Fvkey---v~a~kp-~F~VGEyWd~ 702 (894)
T PLN02784 662 RKEVGYDGWRLDFVRGFW--------------------------GGYVKDY---MEASEP-YFAVGEYWDS 702 (894)
T ss_pred HhccCCCEEEEeccCCCC--------------------------HHHHHHH---HhccCC-cEEEEEeccc
Confidence 999999999999987551 1244444 444556 7999999976
No 38
>PRK13840 sucrose phosphorylase; Provisional
Probab=99.86 E-value=6e-21 Score=227.17 Aligned_cols=182 Identities=15% Similarity=0.159 Sum_probs=132.5
Q ss_pred cCcHHHHHHhhhh-HHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCccccccccc
Q psy9003 912 CASYEDFVRVVIP-RIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMD 990 (1276)
Q Consensus 912 ~Gtf~gl~ek~Ld-yLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d 990 (1276)
.|+++|++++ || ||++| |++ |||||.|+ | . +.+..||++.||+
T Consensus 16 ~GdL~gl~~k-Ld~yL~~l-v~~----vhllPff~----------------p-------s----p~sD~GYdv~DY~--- 59 (495)
T PRK13840 16 DGGLKSLTAL-LDGRLDGL-FGG----VHILPFFY----------------P-------I----DGADAGFDPIDHT--- 59 (495)
T ss_pred CCCHhHHHHH-HHHHHHHH-hCe----EEECCCcc----------------C-------C----CCCCCCCCCcChh---
Confidence 3899999996 99 59999 999 99996552 1 1 1234688888887
Q ss_pred cccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCC
Q psy9003 991 KEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL 1070 (1276)
Q Consensus 991 ~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~ 1070 (1276)
+|||+||+.+||++|++ ||+||+|+|+|||+..|+|+.
T Consensus 60 -------------------------------------~VDP~fGt~eDf~~L~~-----giklmlDlV~NHtS~~h~WFq 97 (495)
T PRK13840 60 -------------------------------------KVDPRLGDWDDVKALGK-----THDIMADLIVNHMSAESPQFQ 97 (495)
T ss_pred -------------------------------------hcCcccCCHHHHHHHHh-----CCeEEEEECCCcCCCCcHHHH
Confidence 35599999999999995 999999999999999998865
Q ss_pred cCC-CCCC---Cccccc-C---C---------------CCC-CC-----------CCC-----CcCCCCCcHHHHHHHHH
Q psy9003 1071 NEF-DGTQ---ACFFHD-G---P---------------RGT-HP-----------LWD-----SRLFNYSEIEVLRFLLS 1110 (1276)
Q Consensus 1071 ~~f-~g~~---~~Yy~~-~---~---------------~g~-~~-----------~W~-----g~~LN~~np~Vr~~Iid 1110 (1276)
... .+.. ..||.. + + .+. +. .|. -++||+.||+|+++|.+
T Consensus 98 d~l~~~~~s~Y~D~fi~~d~~~~~~~~~~~~~~if~~~~g~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~NP~V~~~i~~ 177 (495)
T PRK13840 98 DVLAKGEASEYWPMFLTKDKVFPDGATEEDLAGIYRPRPGLPFTTYTLADGKTRLVWTTFTPQQIDIDVHSAAGWEYLMS 177 (495)
T ss_pred HHHHhCCCCCccCeEEECCCCCcCCCCCcccccccCCCCCCcccceEecCCCceEEeccCCcccceeCCCCHHHHHHHHH
Confidence 322 1111 233421 1 0 011 11 122 28899999999999999
Q ss_pred HHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCC
Q psy9003 1111 NLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGM 1187 (1276)
Q Consensus 1111 sl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~ 1187 (1276)
++++|++ .||||||+|++..+... . |.. . -..++.+.||+++++.++.. +..+|+|.++..
T Consensus 178 il~fwl~-~GVDgfRLDAv~~l~K~-~--gt~-------c---~~~pe~~~~l~~lr~~~~~~--~~~ll~Ei~~y~ 238 (495)
T PRK13840 178 ILDRFAA-SHVTLIRLDAAGYAIKK-A--GTS-------C---FMIPETFEFIDRLAKEARAR--GMEVLVEIHSYY 238 (495)
T ss_pred HHHHHHH-CCCCEEEEechhhhhcC-C--CCC-------c---CCChHHHHHHHHHHHHhhhc--CCEEEEeCcccc
Confidence 9999998 59999999999877422 1 110 0 01256789999999998765 567899976543
No 39
>PRK05402 glycogen branching enzyme; Provisional
Probab=99.86 E-value=1.5e-21 Score=243.82 Aligned_cols=148 Identities=27% Similarity=0.441 Sum_probs=123.6
Q ss_pred cccccCCCCCcc-HHHHHHHHHHHHHHHHHHhhccCchHHhhHHHhhccceEec-C--CcEEEEEEccCCceEEEEeecc
Q psy9003 19 KLLERDPYLNPY-QYEMKRRYGLMVNFLEQFEKHEGGIEKFTTSYNKYGIHVQA-D--NSVRCFEWAPSAQQLYLTGNVS 94 (1276)
Q Consensus 19 ~l~~~dp~L~~~-~~~~~~Ry~~~~~~~~~i~~~~ggl~~Fs~~y~~fGah~~~-~--gg~~f~~wAP~A~~v~l~gdfn 94 (1276)
.++|.|||-.+. -.+. -+..+- +| +..++|+.||||+.. + +||+||+|||+|++|+|+||||
T Consensus 87 ~~~k~DPyaf~~~~~~~---------~~~~~~--~g---~~~~~~~~LGah~~~~~~~~gv~FrvwAP~A~~V~l~gdfn 152 (726)
T PRK05402 87 EQLIDDPYRFGPLLGEL---------DLYLFG--EG---THLRLYETLGAHPVTVDGVSGVRFAVWAPNARRVSVVGDFN 152 (726)
T ss_pred eeEeccccccCCCCCHH---------HHHHHh--CC---ccchhhhccccEEeccCCCCcEEEEEECCCCCEEEEEEEcC
Confidence 378999998754 1111 112221 22 567899999999876 3 5899999999999999999994
Q ss_pred -CCCcc--e-------EEEEEccCccccceEEEEEecCCC---------------CCCccccccc---------------
Q psy9003 95 -LTPWS--I-------MEEASLSSIKLIQSIQYILTGVFG---------------TPEQLKYLVD--------------- 134 (1276)
Q Consensus 95 -~~~w~--m-------~~~~~~~~~~~g~~yky~i~~~~g---------------rp~~as~~~d--------------- 134 (1276)
|..-. | +|+++||+++.|+.|||+|.+.+| +|+++|+|+|
T Consensus 153 ~w~~~~~~m~~~~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPYa~~~~~~~~~~s~v~d~~~~~w~~~~~~~~~ 232 (726)
T PRK05402 153 GWDGRRHPMRLRGESGVWELFIPGLGEGELYKFEILTADGELLLKADPYAFAAEVRPATASIVADLSQYQWNDAAWMEKR 232 (726)
T ss_pred CCCCccccceEcCCCCEEEEEeCCCCCCCEEEEEEeCCCCcEeecCCCceEEEecCCCCcEEEeCCccCCCCCcchhhcc
Confidence 43222 5 999999999999999999998776 8999999988
Q ss_pred -------------ccccccC---------CChHHHHHHHHHHHHhcCc------------------------------CC
Q psy9003 135 -------------ECHKAGL---------FGTPEQLKYLVDECHKAGL------------------------------FG 162 (1276)
Q Consensus 135 -------------e~h~gs~---------~~y~e~a~~li~y~~~~~y------------------------------yg 162 (1276)
|+|+||| .+|++|+++||||+|++|+ ||
T Consensus 233 ~~~~~~~~~~~iYe~hv~~f~~~~~~~~~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~G 312 (726)
T PRK05402 233 AKRNPLDAPISIYEVHLGSWRRHEDGGRFLSYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFG 312 (726)
T ss_pred cccCcccCCcEEEEEehhhhccCCCCCcccCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccC
Confidence 9999995 5899999999999999999 99
Q ss_pred CHHHHHHHHHHHHHcCCC
Q psy9003 163 TPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 163 tp~~l~~~vd~~h~~~i~ 180 (1276)
||+||++|||+||++||+
T Consensus 313 t~~dfk~lV~~~H~~Gi~ 330 (726)
T PRK05402 313 TPDDFRYFVDACHQAGIG 330 (726)
T ss_pred CHHHHHHHHHHHHHCCCE
Confidence 999999999999999998
No 40
>PRK12313 glycogen branching enzyme; Provisional
Probab=99.85 E-value=3.1e-21 Score=237.89 Aligned_cols=119 Identities=27% Similarity=0.448 Sum_probs=109.1
Q ss_pred HHHhhccceEecCC---cEEEEEEccCCceEEEEeeccCCCcc-----e------EEEEEccCccccceEEEEEecCCC-
Q psy9003 60 TSYNKYGIHVQADN---SVRCFEWAPSAQQLYLTGNVSLTPWS-----I------MEEASLSSIKLIQSIQYILTGVFG- 124 (1276)
Q Consensus 60 ~~y~~fGah~~~~g---g~~f~~wAP~A~~v~l~gdfn~~~w~-----m------~~~~~~~~~~~g~~yky~i~~~~g- 124 (1276)
+.|+.||||+..++ ||+||+|||+|++|+|+||| |+|+ | +|++++|++++|+.|||+|.+.+|
T Consensus 22 ~~~~~lGah~~~~~~~~gv~Frv~AP~A~~V~v~gdf--n~w~~~~~~m~~~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~ 99 (633)
T PRK12313 22 RLYEYLGAHLEEVDGEKGTYFRVWAPNAQAVSVVGDF--NDWRGNAHPLVRRESGVWEGFIPGAKEGQLYKYHISRQDGY 99 (633)
T ss_pred cchhcCCcEEeccCCcccEEEEEECCCCCEEEEEEec--CCCCcccccccccCCCEEEEEeCCCCCCCEEEEEEECCCCe
Confidence 57999999988853 89999999999999999999 5554 5 999999999999999999987666
Q ss_pred --------------CCCccccccc----------------------------ccccccC--------CChHHHHHHHHHH
Q psy9003 125 --------------TPEQLKYLVD----------------------------ECHKAGL--------FGTPEQLKYLVDE 154 (1276)
Q Consensus 125 --------------rp~~as~~~d----------------------------e~h~gs~--------~~y~e~a~~li~y 154 (1276)
+|.++|+|+| |+|+||| .+|++|+++|+||
T Consensus 100 ~~~~~DPya~~~~~~~~~~s~v~d~~~~~w~~~~~~~~~~~~~~~~~~~~iYe~hv~~f~~~~~~~~g~~~~~~~~ll~y 179 (633)
T PRK12313 100 QVEKIDPFAFYFEARPGTASIVWDLPEYKWKDGLWLARRKRWNALDRPISIYEVHLGSWKRNEDGRPLSYRELADELIPY 179 (633)
T ss_pred EEecCCCceEEEecCCCCceEECCCcccCCCChhhhhccccCCCCCCCceEEEEehhccccCCCCCccCHHHHHHHHHHH
Confidence 7899999987 9999984 5899999999999
Q ss_pred HHhcCc------------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 155 CHKAGL------------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 155 ~~~~~y------------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
+|++|+ ||||+||++|||+||++||+
T Consensus 180 l~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~ 235 (633)
T PRK12313 180 VKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIG 235 (633)
T ss_pred HHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCE
Confidence 999999 99999999999999999999
No 41
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=99.84 E-value=8.6e-21 Score=233.09 Aligned_cols=122 Identities=27% Similarity=0.470 Sum_probs=109.7
Q ss_pred hHHHhhccceEec-C--CcEEEEEEccCCceEEEEeecc-CCCcc--e-------EEEEEccCccccceEEEEEecCCC-
Q psy9003 59 TTSYNKYGIHVQA-D--NSVRCFEWAPSAQQLYLTGNVS-LTPWS--I-------MEEASLSSIKLIQSIQYILTGVFG- 124 (1276)
Q Consensus 59 s~~y~~fGah~~~-~--gg~~f~~wAP~A~~v~l~gdfn-~~~w~--m-------~~~~~~~~~~~g~~yky~i~~~~g- 124 (1276)
.++|+.||||... + +|++||+|||+|++|.|+|||| |+... | +|+++||+++.|+.|+|+|.+.+|
T Consensus 11 ~~~~~~LGah~~~~~~~~g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~ 90 (613)
T TIGR01515 11 FRSYELLGSHYMELDGVSGTRFCVWAPNAREVRVAGDFNYWDGREHPMRRRNDNGIWELFIPGIGEGELYKYEIVTNNGE 90 (613)
T ss_pred CChHHhcCceEeccCCcCcEEEEEECCCCCEEEEEEecCCCCCceecceEecCCCEEEEEeCCCCCCCEEEEEEECCCCc
Confidence 4689999999876 3 3899999999999999999994 43322 5 999999999999999999998776
Q ss_pred --------------CCCccccccc----------------------------ccccccC---CChHHHHHHHHHHHHhcC
Q psy9003 125 --------------TPEQLKYLVD----------------------------ECHKAGL---FGTPEQLKYLVDECHKAG 159 (1276)
Q Consensus 125 --------------rp~~as~~~d----------------------------e~h~gs~---~~y~e~a~~li~y~~~~~ 159 (1276)
+|+++|+|+| |+|+||| .+|++|+++||||+|++|
T Consensus 91 ~~~~~DPYA~~~~~~~~~~s~v~d~~~~~w~~~~w~~~~~~~~~~~~~~~iYe~hv~~~~~~g~~~~i~~~l~dyl~~LG 170 (613)
T TIGR01515 91 IRLKADPYAFYAEVRPNTASLVYDLEGYSWQDQKWQEKRKAKTPYEKPVSIYELHLGSWRHGLSYRELADQLIPYVKELG 170 (613)
T ss_pred EEEeCCCCEeeeccCCCCcEEEECCccCccCchhhhhcccccCcccCCceEEEEehhhccCCCCHHHHHHHHHHHHHHcC
Confidence 7889999986 9999996 469999999999999999
Q ss_pred c------------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 160 L------------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 160 y------------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
+ ||||+||++|||+||++||+
T Consensus 171 vt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~ 221 (613)
T TIGR01515 171 FTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIG 221 (613)
T ss_pred CCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCE
Confidence 9 99999999999999999999
No 42
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=99.83 E-value=5.9e-20 Score=220.27 Aligned_cols=267 Identities=13% Similarity=0.133 Sum_probs=171.5
Q ss_pred CceEEEEecCCccccCccCcHHHHHH-hhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccC
Q psy9003 895 NLKIYESHVGICTQEQKCASYEDFVR-VVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAES 973 (1276)
Q Consensus 895 d~vIYElHVr~ft~~~~~Gtf~gl~e-k~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S 973 (1276)
..+=+.+++.++...++..-+..+.+ ...+||++|||++ |||+|+|+ .
T Consensus 51 a~~W~~~~P~s~i~~~~~s~~~~L~~~~~wdyL~~LGV~~----iwl~P~~~--------------------S------- 99 (688)
T TIGR02455 51 ASVWFTAYPAAIIAPEGCSVLEALADDALWKALSEIGVQG----IHNGPIKL--------------------S------- 99 (688)
T ss_pred cCeeEEecchhhcCCCCCcHHHHhcChHHHHHHHHhCCCE----EEeCccee--------------------c-------
Confidence 45566777887754444444444443 5699999999999 99995553 1
Q ss_pred CCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccc-cccccccCCCCCCHHHHHHHHHHHHHcCCE
Q psy9003 974 HDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLY 1052 (1276)
Q Consensus 974 ~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkY-t~D~~~ID~~~Gt~eEfK~LV~alHk~GI~ 1052 (1276)
..-|||+-+-.. ...| ..| +.|||.|||.+||++|++++|++||+
T Consensus 100 --Ggi~g~~~tP~~-------------------------------D~gyDi~d-~~Idp~~GT~eDf~~L~~~Ah~~G~~ 145 (688)
T TIGR02455 100 --GGIRGREFTPSI-------------------------------DGNFDRIS-FDIDPLLGSEEELIQLSRMAAAHNAI 145 (688)
T ss_pred --ccccccCCCCCC-------------------------------CCCCCccc-CccCcccCCHHHHHHHHHHHHHCCCE
Confidence 012444321110 0123 334 36789999999999999999999999
Q ss_pred EEEEEeccccCCcccCCCcCC--CCCCCcccc-------------cCCCC------------------------------
Q psy9003 1053 VLLDVVHSHASKNVLDGLNEF--DGTQACFFH-------------DGPRG------------------------------ 1087 (1276)
Q Consensus 1053 VILDvV~NHt~~~~~~~~~~f--~g~~~~Yy~-------------~~~~g------------------------------ 1087 (1276)
||+|+|+|||+..++ +..+- .+.-+.||+ ..+.+
T Consensus 146 vi~DlVpnHTs~ghd-F~lAr~~~~~Y~g~Y~mvei~~~~W~vwpd~~~~~~~~~l~~~~~~~L~~~g~i~~~l~rviF~ 224 (688)
T TIGR02455 146 TIDDIIPAHTGKGAD-FRLAELAHGDYPGLYHMVEIREEDWALLPEVPAGRDAVNLLPAQCDELKAKHYIVGQLQRVIFF 224 (688)
T ss_pred EEEEeCCCCCCCCcc-hHHHhhcCCCCCCceeeccccccccccCCCCCcccccccccHHHHHHHhhccCcccccccceec
Confidence 999999999999986 43211 222345551 01111
Q ss_pred ----CCCCCC------------------------CcCCCCCcHH--HHHHHH-HHHHHHHHhCCCcEEccCCcccccccc
Q psy9003 1088 ----THPLWD------------------------SRLFNYSEIE--VLRFLL-SNLRWYLDEYQFDGFRFDGVTSMLYHN 1136 (1276)
Q Consensus 1088 ----~~~~W~------------------------g~~LN~~np~--Vr~~Ii-dsl~~Wv~eygVDGFRfD~a~~L~~~d 1136 (1276)
+-++|+ -|+|||.||. ||+.|+ +++++|++ .|+||||+|+++.|.-..
T Consensus 225 ~pg~e~s~Wt~d~~v~g~dG~~Rrw~Y~H~F~~~QPdLNw~dPs~av~~~~~gdal~~w~~-lG~~GfRLDAvpfLg~e~ 303 (688)
T TIGR02455 225 EPGIKDTDWSATGEITGVDGKTRRWVYLHYFKEGQPSLNWLDPTFAAQQLIIGDALHAIDC-LGARGLRLDANGFLGVER 303 (688)
T ss_pred CCCcccCCceecccccCCCccchhhhhhhhccCCCCccCccCccHHHHHHHHHHHHHHHHH-hccccceeccccceeeec
Confidence 123553 1789999999 999999 99999999 699999999999885332
Q ss_pred CCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHH--hhCCCeEEEEEccCCCCCCccccccCCcccCcccCCCccc---
Q psy9003 1137 HGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLH--DKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLVSLEGS--- 1211 (1276)
Q Consensus 1137 ~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr--~~~PdvilIAE~~s~~p~~~~p~~~gglGFD~~~n~lEes--- 1211 (1276)
...++.| .+.+.|++.+++.|. ..+|+.++++|.-- +|...+.+.. + |.|+.++++-..
T Consensus 304 ~~~~~~~-------------~e~h~ll~~~r~~l~~~~r~~Gg~ll~E~nl-~~~d~~~~~g-~-~~dl~~dF~t~p~~~ 367 (688)
T TIGR02455 304 RAEGTAW-------------SEGHPLSLTGNQLIAGAIRKAGGFSFQELNL-TIDDIAAMSH-G-GADLSYDFITRPAYH 367 (688)
T ss_pred CCCCCCC-------------CccCHHHHHHHHHHHHhhhcCCeeEeeeccC-CHHHHHHHhC-C-CcceeecccccHHHH
Confidence 2222222 235678999999988 78999999999533 3333334433 3 777777644211
Q ss_pred -hh---hHHHHHHHHHHHHHhcccCCCCCeeEeecCC
Q psy9003 1212 -AL---SALFDAAMNTTEERFKWLSADPGYVSTKHEG 1244 (1276)
Q Consensus 1212 -aL---S~~F~~~Ln~l~~~~p~L~~~~~~~l~nHD~ 1244 (1276)
|| ..++.+.+.+.....|.-.+.-...+-|||+
T Consensus 368 ~AL~tgda~pLr~~L~~~~~~gid~~~~~~~LrNHDE 404 (688)
T TIGR02455 368 HALLTGDTEFLRLMLKEMHAFGIDPASLIHALQNHDE 404 (688)
T ss_pred HHHHcCCHHHHHHHHHhhhcCCCCchhhhhhccCccc
Confidence 22 2555555555444444211111244668887
No 43
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=99.83 E-value=1.8e-20 Score=222.01 Aligned_cols=239 Identities=14% Similarity=0.123 Sum_probs=154.5
Q ss_pred cCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCccccccc
Q psy9003 909 EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWL 988 (1276)
Q Consensus 909 ~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~ 988 (1276)
.+..|++.+++++ ||++ ||++ |||+|.|+ . + .+.||++.||+
T Consensus 13 g~glgdl~g~l~~---yL~~-~v~~----i~LlPffp--------------------s--------~-sD~GYdv~DY~- 54 (470)
T TIGR03852 13 GKNLKELNKVLEN---YFKD-AVGG----VHLLPFFP--------------------S--------T-GDRGFAPMDYT- 54 (470)
T ss_pred CCChhhHHHHHHH---HHHH-hCCE----EEECCCCc--------------------C--------C-CCCCcCchhhc-
Confidence 3567888888875 9999 8999 99995542 1 1 24688887777
Q ss_pred cccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccC
Q psy9003 989 MDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLD 1068 (1276)
Q Consensus 989 ~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~ 1068 (1276)
+|||+||+.++|++|+++ |+||+|+|+|||+..|+|
T Consensus 55 ---------------------------------------~VDP~~Gt~~Df~~L~~~-----~kvmlDlV~NHtS~~h~W 90 (470)
T TIGR03852 55 ---------------------------------------EVDPAFGDWSDVEALSEK-----YYLMFDFMINHISRQSEY 90 (470)
T ss_pred ---------------------------------------eeCcccCCHHHHHHHHHh-----hhHHhhhcccccccchHH
Confidence 455999999999999997 899999999999999988
Q ss_pred CCcCCCC-CC---Ccccc-c----C---CC-C------------CCCC-----------CC-----CcCCCCCcHHHHHH
Q psy9003 1069 GLNEFDG-TQ---ACFFH-D----G---PR-G------------THPL-----------WD-----SRLFNYSEIEVLRF 1107 (1276)
Q Consensus 1069 ~~~~f~g-~~---~~Yy~-~----~---~~-g------------~~~~-----------W~-----g~~LN~~np~Vr~~ 1107 (1276)
+.....+ .. ..||. . . +. . .+.. |+ .++||+.||.|+++
T Consensus 91 Fq~~~~~~~~s~y~d~fi~~~~~w~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~np~v~e~ 170 (470)
T TIGR03852 91 YQDFLEKKDNSKYKDLFIRYKDFWPNGRPTQEDVDLIYKRKDRAPYQEVTFADGSTEKVWNTFGEEQIDLDVTSETTKRF 170 (470)
T ss_pred HHHHHhcCCCCCccceEEecccccCCCCccccccccccCCCCCCCCCceEEcCCCCeEEEccCCccccccCCCCHHHHHH
Confidence 7543322 11 24444 1 0 10 0 0012 11 37899999999999
Q ss_pred HHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEccCCC
Q psy9003 1108 LLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGM 1187 (1276)
Q Consensus 1108 Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~s~~ 1187 (1276)
|.+++++|++ .||||||+|+++.+... .| .+ . ....++.+++|+++++.+ ..|++++|+|.+..+
T Consensus 171 i~~il~fwl~-~GvdgfRLDAv~~l~K~-~G--t~-----c----~~l~pet~~~l~~~r~~~--~~~~~~ll~E~~~~~ 235 (470)
T TIGR03852 171 IRDNLENLAE-HGASIIRLDAFAYAVKK-LG--TN-----D----FFVEPEIWELLDEVRDIL--APTGAEILPEIHEHY 235 (470)
T ss_pred HHHHHHHHHH-cCCCEEEEecchhhccc-CC--CC-----c----ccCChhHHHHHHHHHHHh--ccCCCEEEeHhhhhc
Confidence 9999999997 69999999999988422 11 10 0 012257889999999877 557999999986543
Q ss_pred CCCccccccCCcccCcccCCCccchhhHHHHHHHHHHHHHhcccCCCCCeeEeecCCCeE
Q psy9003 1188 PASCRPVTEGGTGFDYRLVSLEGSALSALFDAAMNTTEERFKWLSADPGYVSTKHEGDKV 1247 (1276)
Q Consensus 1188 p~~~~p~~~gglGFD~~~n~lEesaLS~~F~~~Ln~l~~~~p~L~~~~~~~l~nHD~~RV 1247 (1276)
.....--..+.+=|+|....+-=.++...-.+.+.++.+..|.. +-+++.|||.=-+
T Consensus 236 ~~~~~~gde~~mvY~F~lppl~l~al~~~~~~~l~~wl~~~p~~---~~nfL~sHDgigl 292 (470)
T TIGR03852 236 TIQFKIAEHGYYVYDFALPMLVLYSLYSGKTNRLADWLRKSPMK---QFTTLDTHDGIGV 292 (470)
T ss_pred ccccccccceeEEccCccchhhHHHhhccCHHHHHHHHHhCccc---ceEEeecCCCCCC
Confidence 32110001222334444332200011011123444444556641 1256789997655
No 44
>KOG0471|consensus
Probab=99.82 E-value=2.5e-20 Score=225.93 Aligned_cols=169 Identities=21% Similarity=0.226 Sum_probs=130.0
Q ss_pred CCCCCceEEEEecCCccc--cCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCcccccccc
Q psy9003 891 KKPDNLKIYESHVGICTQ--EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTV 968 (1276)
Q Consensus 891 ~~~~d~vIYElHVr~ft~--~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i 968 (1276)
.+|+..+|||+.+++|.. ....|+++|+.++ |+||+++|+|+ ||+.|+++ .
T Consensus 13 ~~W~~~~~YQI~~~sF~~s~~d~~G~~~GI~~k-ldyi~~lG~ta----iWisP~~~--------------------s-- 65 (545)
T KOG0471|consen 13 DWWKTESIYQIYPDSFADSDGDGVGDLKGITSK-LDYIKELGFTA----IWLSPFTK--------------------S-- 65 (545)
T ss_pred hhhhcCceeEEeccccccccCCCccccccchhh-hhHHHhcCCce----EEeCCCcC--------------------C--
Confidence 356789999999999975 4566999999996 99999999999 99995442 1
Q ss_pred ccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHH
Q psy9003 969 AYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHK 1048 (1276)
Q Consensus 969 ~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk 1048 (1276)
..-+.||++.||+ +++|+||+.++|++||+++|+
T Consensus 66 ------~~~~~GY~~~d~~----------------------------------------~l~p~fGt~edf~~Li~~~h~ 99 (545)
T KOG0471|consen 66 ------SKPDFGYDASDLE----------------------------------------QLRPRFGTEEDFKELILAMHK 99 (545)
T ss_pred ------CHHHhccCccchh----------------------------------------hhcccccHHHHHHHHHHHHhh
Confidence 1125788887777 355999999999999999999
Q ss_pred cCCEEEEEEeccccCCcccCCCcCCCCCCC--cccccCCCCC--------CCCC---------C----------------
Q psy9003 1049 AGLYVLLDVVHSHASKNVLDGLNEFDGTQA--CFFHDGPRGT--------HPLW---------D---------------- 1093 (1276)
Q Consensus 1049 ~GI~VILDvV~NHt~~~~~~~~~~f~g~~~--~Yy~~~~~g~--------~~~W---------~---------------- 1093 (1276)
+||++|+|+|+||++..++|+......... .||...+.+. +.+| .
T Consensus 100 ~gi~ii~D~viNh~~~~~~wf~~~~~~~~~y~d~~~~~~~~~~~~g~~~~p~nw~~~~~~s~~~~~e~~~~~~l~~~~~~ 179 (545)
T KOG0471|consen 100 LGIKIIADLVINHRSDEVEWFKASPTSKTGYEDWYPWHDGSSLDVGKRIPPLNWLSVFGGSAWPFDEGRQKYYLGQFAVL 179 (545)
T ss_pred cceEEEEeeccccCCccccccccCccccccceeeeeccCcccccccCCCCccchHhhhccccCcccccccceeccchhhc
Confidence 999999999999999888776533222111 1221111100 1111 0
Q ss_pred CcCCCCCcHHHHHHHHHHHH-HHHHhCCCcEEccCCccccc
Q psy9003 1094 SRLFNYSEIEVLRFLLSNLR-WYLDEYQFDGFRFDGVTSML 1133 (1276)
Q Consensus 1094 g~~LN~~np~Vr~~Iidsl~-~Wv~eygVDGFRfD~a~~L~ 1133 (1276)
.+++|+++|.|++.|.++++ +|.+ +||||||+|++..+.
T Consensus 180 ~pDln~~n~~V~~~~~~~l~~~~~~-~gvdGfRiD~v~~~~ 219 (545)
T KOG0471|consen 180 QPDLNYENPDVRKAIKEWLRDFWLE-KGVDGFRIDAVKGYA 219 (545)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhh-cCCCeEEEEcccccc
Confidence 27899999999999999999 7777 799999999999885
No 45
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=99.80 E-value=3.7e-18 Score=201.42 Aligned_cols=397 Identities=20% Similarity=0.219 Sum_probs=243.6
Q ss_pred ccCCCCCcccCeeecCceEEEEEccCCc-------EEEEE-------ccCCC------CccccccceecCCCeEEEEcCC
Q psy9003 765 KAGLFGTPEQLKYLVDECHKAGLLCFMH-------VVCAA-------GDFNN------WNREEFAYKKLDFGKWELVLPP 824 (1276)
Q Consensus 765 ~~G~~Gtp~G~~y~~D~a~FalwAP~A~-------~VsLv-------GDFN~------wd~~~~pM~r~~~GVWsl~Ip~ 824 (1276)
.+|++-.++|+ +.|-.|.|... .|+|. -|+.. |....+|+.+.+.-.|.+ +.|
T Consensus 27 rLGAh~~~dGl------teiGFWtPel~~~~i~~~~i~LEVftP~~~ID~~~~~q~v~f~R~~~~L~~qgey~WgV-v~G 99 (811)
T PF14872_consen 27 RLGAHYRPDGL------TEIGFWTPELAGDVIQPRDIYLEVFTPLEPIDPRAPEQTVRFRRDRLPLERQGEYHWGV-VAG 99 (811)
T ss_pred HhcCccCCCCc------eEEeeccchhhhhhccccceEEEEecCCCCCCCcCCCceeEEEEEEEeeccccceeeeh-hhc
Confidence 35555555554 57889999876 66653 22221 112345666677778877 778
Q ss_pred CCCCCcccCcccEEEEEEEEeCCeeeeecCCcceEeecCCCCCc--cccceeeCCCCC-CCC-CcC-----CCC-CCCCC
Q psy9003 825 NPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATYVTEPPVVGH--AYEQRIWNPKPQ-DKH-KWT-----SSK-PKKPD 894 (1276)
Q Consensus 825 ~~~G~~~i~hGs~YkYrV~~~dG~~~~~~DPYAkav~~~~~~s~--v~~~~~~~p~~~-~~y-~W~-----~~r-p~~~~ 894 (1276)
...|. ....|+.|..+....+|.+..+.||.|+++.. +.++. +|+......... .+| .-. .+. +..+.
T Consensus 100 lraGt-r~q~GsfYwLry~d~~~~~~~I~DpLaySlPy-GvfaPAElYDl~~lq~~RaD~~Yf~~~~a~~~~~~~~rv~~ 177 (811)
T PF14872_consen 100 LRAGT-RDQAGSFYWLRYRDQDGEVQIIRDPLAYSLPY-GVFAPAELYDLERLQRRRADLDYFEATGAADPSDGIPRVPA 177 (811)
T ss_pred cCCCC-cccccceEEEEEccCCCCeEEecccccccCcc-cccChHHhhchHhHhhhhhhHHHHHhhccccCCCCCcccCC
Confidence 88886 77899999999988889988999999987643 22221 233211111110 011 100 011 22446
Q ss_pred CceEEEEecCCccccCccCcHHHHHHhhhhHHH---------------HcCCCCCccceeecccccc-----------cc
Q psy9003 895 NLKIYESHVGICTQEQKCASYEDFVRVVIPRIV---------------KQGMAIPDKWIELLKKFKD-----------ED 948 (1276)
Q Consensus 895 d~vIYElHVr~ft~~~~~Gtf~gl~ek~LdyLK---------------~LGVna~d~wV~LmP~f~~-----------ee 948 (1276)
+..|-++||++.|++ ||+.|+++ +...|. -.|+++ |||||+-+- +.
T Consensus 178 P~nILQiHv~TAsp~---GtlaGLT~-iyqria~K~~~g~pLtp~E~ny~GYDA----vQLLPiEPtieyr~e~~~~h~F 249 (811)
T PF14872_consen 178 PRNILQIHVGTASPE---GTLAGLTR-IYQRIADKLAAGEPLTPAEENYVGYDA----VQLLPIEPTIEYRAENEPGHEF 249 (811)
T ss_pred CceeEEEecCCCCCC---cchHHHHH-HHHHHHHHHhcCCCCChhHHhcccccc----eeeeccCCcceeccccCCCCce
Confidence 789999999999876 78888876 233332 389999 999986553 22
Q ss_pred ccccccee-ecc--Ccccccc---ccccccCCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccc
Q psy9003 949 WNMGNIVH-TLT--NRRYMEK---TVAYAESHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKY 1022 (1276)
Q Consensus 949 w~~~~pi~-~l~--~~Pi~E~---~i~~~~S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkY 1022 (1276)
|+...+-. .++ ..++.+. .+. -...+..|||||+.-+- |.+++|. +-
T Consensus 250 f~~~~~d~~~~~~~~~~~~~~~~v~v~-L~kPdtqNWGYDv~I~G----------saAtNPa-----lL----------- 302 (811)
T PF14872_consen 250 FSIRPEDEDELDPETEGVHEDGDVTVT-LRKPDTQNWGYDVVILG----------SAATNPA-----LL----------- 302 (811)
T ss_pred eeecccccccccccccccccCceEEEE-ecCCCccccCcceeeec----------cCCCCHH-----HH-----------
Confidence 33222100 000 0011000 000 01135689999987555 6677774 22
Q ss_pred cccccccCCCCCCHHHHHHHHHHHHH---cCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCC
Q psy9003 1023 LVDECHKAGLFGTPEQLKYLVDECHK---AGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNY 1099 (1276)
Q Consensus 1023 t~D~~~ID~~~Gt~eEfK~LV~alHk---~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~ 1099 (1276)
.-++++|+-.||.+||. ..|.||+|+||.|....... -.++.|+.. ++..|.++|+
T Consensus 303 ---------~TlRPDElVdfiatLHnFp~gPIqvIyDlVyGHADNQ~~~------LLn~~flkG------PnMYGQdlnh 361 (811)
T PF14872_consen 303 ---------ETLRPDELVDFIATLHNFPTGPIQVIYDLVYGHADNQALD------LLNRRFLKG------PNMYGQDLNH 361 (811)
T ss_pred ---------hcCCcHHHHHHHHHHhcCCCCCeEEEEeeecccccchhhH------hhhhhhccC------Cccccccccc
Confidence 12689999999999996 66999999999998876432 222344432 3566789999
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCC---
Q psy9003 1100 SEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPE--- 1176 (1276)
Q Consensus 1100 ~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~Pd--- 1176 (1276)
.+|.||..+++.-|.-++ +|+||+|+|.+....+.+ ...+.+..+- .|+.+|.+.+.++.+.
T Consensus 362 q~P~VRAILLEmQRRK~n-~GaDGIRVDGgQDFk~fn-------------plt~~ve~DD-~YL~~M~dvvQ~I~~~~r~ 426 (811)
T PF14872_consen 362 QNPVVRAILLEMQRRKIN-TGADGIRVDGGQDFKFFN-------------PLTGRVEYDD-AYLLAMSDVVQEIGGARRL 426 (811)
T ss_pred cChHHHHHHHHHHHhhcc-cCCceeEecccccceeec-------------ccccccccch-HHHHHHHHHHhhcccccee
Confidence 999999999999999888 899999999987553221 1112222221 3899999999887654
Q ss_pred eEEEEEccCCCCCCccccccC--------CcccCcccCCC---ccc-hhhHHHHHHHHHHHHHhcccCCCCCeeEe--ec
Q psy9003 1177 IITIAEDVSGMPASCRPVTEG--------GTGFDYRLVSL---EGS-ALSALFDAAMNTTEERFKWLSADPGYVST--KH 1242 (1276)
Q Consensus 1177 vilIAE~~s~~p~~~~p~~~g--------glGFD~~~n~l---Ees-aLS~~F~~~Ln~l~~~~p~L~~~~~~~l~--nH 1242 (1276)
.++|-|+-..||.- .|..- -.-=.|+|.++ .+. +|-.=|.+...|+.+.+- .+..|+.+ ||
T Consensus 427 ~f~IfEDGRPWP~e--gWE~~StYr~lie~~P~sfQWGPLiFAHNTP~L~~FW~~KW~RVcEv~~---~G~~WITGcaNH 501 (811)
T PF14872_consen 427 PFTIFEDGRPWPQE--GWEEISTYRDLIELRPDSFQWGPLIFAHNTPALQGFWDRKWRRVCEVMF---QGENWITGCANH 501 (811)
T ss_pred EEEEecCCCcCCcc--chHHHHHHHHHHHhCCccccccceeeecCChHHHHHHHHHHHHHHHHHh---cccceeeccccc
Confidence 67899987777752 11100 00112455533 121 121334555555555433 34557765 99
Q ss_pred CCCe
Q psy9003 1243 EGDK 1246 (1276)
Q Consensus 1243 D~~R 1246 (1276)
|+-|
T Consensus 502 DTvR 505 (811)
T PF14872_consen 502 DTVR 505 (811)
T ss_pred cccc
Confidence 9876
No 46
>KOG0470|consensus
Probab=99.79 E-value=1.2e-19 Score=217.99 Aligned_cols=166 Identities=29% Similarity=0.470 Sum_probs=141.1
Q ss_pred CCh--hcccccccCCCCCccHHHHHHHHHHHHHHHHHHhhccCchHHhhHHHhhccceEecCCcEEEEEEccCCceEEEE
Q psy9003 13 HIP--ELHKLLERDPYLNPYQYEMKRRYGLMVNFLEQFEKHEGGIEKFTTSYNKYGIHVQADNSVRCFEWAPSAQQLYLT 90 (1276)
Q Consensus 13 ~~p--~~~~l~~~dp~L~~~~~~~~~Ry~~~~~~~~~i~~~~ggl~~Fs~~y~~fGah~~~~gg~~f~~wAP~A~~v~l~ 90 (1276)
.+| .+.+++++||||.||...+++||+.+.+.++.|.+.+|||+.|+.+|+.||+|+..++.+.|++|||.|+.|+++
T Consensus 51 ~~p~~~ve~~~~~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~y~~~g~h~~~d~~v~~~ewaP~a~~~s~~ 130 (757)
T KOG0470|consen 51 DLPADVVEKFYEIDPFLVPFALFLRERYKQLDDGLEFIGKSEGGLSAFSRGYEPLGTHRTPDGRVDFTEWAPLAEAVSLI 130 (757)
T ss_pred CCChHHhhcccccccccccccccchhhHHHHHHHhhhhhhccCChhhhhccccccceeccCCCceeeeeecccccccccc
Confidence 445 779999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred eeccCCCcc---e---------EEEEEccCc-------cccceEEEEEecCCC-----CCCccc----------------
Q psy9003 91 GNVSLTPWS---I---------MEEASLSSI-------KLIQSIQYILTGVFG-----TPEQLK---------------- 130 (1276)
Q Consensus 91 gdfn~~~w~---m---------~~~~~~~~~-------~~g~~yky~i~~~~g-----rp~~as---------------- 130 (1276)
||| |+|+ | +|++++|.- .-|.-+|+.+.++.| +|..|.
T Consensus 131 gd~--n~W~~~~~~~~~k~~~g~w~i~l~~~~~~s~~v~H~s~~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~q~~~~~~ 208 (757)
T KOG0470|consen 131 GDF--NNWNPSSNELKPKDDLGVWEIDLPPKVNGSGAVPHGSVSKIHLSTPYGETCKRIPAWATYVDQEGEGPQYYGIYW 208 (757)
T ss_pred ccc--CCCCCcccccCcccccceeEEecCcccCCCccccccceeEEEeecCCcceeeccChHhhcccCCCcccceeeccC
Confidence 999 6666 2 999999854 223445556777877 222222
Q ss_pred ---------------------cccccccc-cc------CCC---hHHHHHHHHHHHHhcCc-------------------
Q psy9003 131 ---------------------YLVDECHK-AG------LFG---TPEQLKYLVDECHKAGL------------------- 160 (1276)
Q Consensus 131 ---------------------~~~de~h~-gs------~~~---y~e~a~~li~y~~~~~y------------------- 160 (1276)
...=|+|. |= =-+ |.+.+++.+|.+|+.||
T Consensus 209 ~~~~e~~w~~~~~~p~~P~~sL~IYE~HVrgfS~~E~~v~~~~gY~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~G 288 (757)
T KOG0470|consen 209 DPSPEFDWGFKHSRPKIPESSLRIYELHVRGFSSHESKVNTRGGYLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWG 288 (757)
T ss_pred CCCCcccccccCCCCCCChhheEEEEEeeccccCCCCccccccchhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccC
Confidence 22229999 42 345 99999999999999999
Q ss_pred ------------CCCHH------HHHHHHHHHHHcCCC
Q psy9003 161 ------------FGTPE------QLKYLVDECHKAGLF 180 (1276)
Q Consensus 161 ------------ygtp~------~l~~~vd~~h~~~i~ 180 (1276)
||||+ |||+|||++|..||.
T Consensus 289 Y~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~ 326 (757)
T KOG0470|consen 289 YQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIE 326 (757)
T ss_pred cceeEeecccccccCCCcccchHHHHHHHHHHhhCCcE
Confidence 99999 999999999999998
No 47
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=99.76 E-value=4e-18 Score=211.63 Aligned_cols=193 Identities=17% Similarity=0.227 Sum_probs=137.0
Q ss_pred cCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCcccccccccc
Q psy9003 912 CASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDK 991 (1276)
Q Consensus 912 ~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~ 991 (1276)
.+||.+++++ ||||++||||+ |||+|+|+ . .+..+|||++.||+
T Consensus 12 ~~tf~~~~~~-L~YL~~LGv~~----V~lsPi~~--------------------a-------~~gs~hGYdv~D~~---- 55 (825)
T TIGR02401 12 GFTFDDAAAL-LPYLKSLGVSH----LYLSPILT--------------------A-------VPGSTHGYDVVDHS---- 55 (825)
T ss_pred CCCHHHHHHh-hHHHHHcCCCE----EEeCcCcc--------------------C-------CCCCCCCCCCCCCC----
Confidence 4799999985 99999999999 99995442 1 11235899998888
Q ss_pred ccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCc---ccC
Q psy9003 992 EMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLD 1068 (1276)
Q Consensus 992 ~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~---~~~ 1068 (1276)
. |||.+|+.++|++||++||++||+||||+|+||++.+ ++|
T Consensus 56 -----------------~-------------------idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~a~~~~~n~w 99 (825)
T TIGR02401 56 -----------------E-------------------INPELGGEEGLRRLSEAARARGLGLIVDIVPNHMAVHLEQNPW 99 (825)
T ss_pred -----------------C-------------------cCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccccccccChH
Confidence 3 3489999999999999999999999999999999976 222
Q ss_pred CCcCC-CCCCC-------------------------------------------------ccccc----CCCC-------
Q psy9003 1069 GLNEF-DGTQA-------------------------------------------------CFFHD----GPRG------- 1087 (1276)
Q Consensus 1069 ~~~~f-~g~~~-------------------------------------------------~Yy~~----~~~g------- 1087 (1276)
+.... .|..+ .||.. .|..
T Consensus 100 f~dvl~~g~~S~y~~~Fdidw~~~~~~gkvllP~Lg~~y~~~l~~g~l~l~~d~~~~~~l~y~~~~~Pi~p~ty~~il~~ 179 (825)
T TIGR02401 100 WWDVLKNGPSSAYAEYFDIDWDPLGGDGKLLLPILGDQYGAVLDRGEIKLRFDGDGTLALRYYDHRLPLAPGTLPELEVL 179 (825)
T ss_pred HHHHHHhCCCCCccCceEEeCCCCCCCCceeecccCchhhhHHhcCceeeeecCCCceeEEecCccCCcCccchhhhhhh
Confidence 21000 00000 12221 1100
Q ss_pred -----C--------------CCCCC----------------CcCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCcccc
Q psy9003 1088 -----T--------------HPLWD----------------SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM 1132 (1276)
Q Consensus 1088 -----~--------------~~~W~----------------g~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L 1132 (1276)
. ...|- -+.++.++|+|.+.....+..|+++..|||+|+|.+..+
T Consensus 180 ~~~~~~~~~l~~ll~~Q~yRL~~Wr~a~~~inYRrFf~i~~L~~lr~E~~~Vf~~~h~~i~~lv~~g~vdGlRIDh~dGL 259 (825)
T TIGR02401 180 EDVPGDGDALKKLLERQHYRLTWWRVAAGEINYRRFFDINDLAGVRVEDPAVFDATHRLVLELVAEGLVDGLRIDHIDGL 259 (825)
T ss_pred ccccCChhhHHHHHHHHHHHhhhhhccccccCcccccCccccccccCCCHHHHHHHHHHHHHHHHcCCCceEEecccccc
Confidence 0 01232 145678899999999999999999977999999988877
Q ss_pred ccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEE-ccCCCCCCccccc-cCCcccCc
Q psy9003 1133 LYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAE-DVSGMPASCRPVT-EGGTGFDY 1203 (1276)
Q Consensus 1133 ~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE-~~s~~p~~~~p~~-~gglGFD~ 1203 (1276)
. ++..||+++++. ..|+.+++.| ++.....+...|. .|-.||||
T Consensus 260 ~------------------------dP~~Yl~rLr~~---~~~~~yivvEKIl~~~E~Lp~~W~v~GTtGYdf 305 (825)
T TIGR02401 260 A------------------------DPEGYLRRLREL---VGPARYLVVEKILAPGEHLPADWPVDGTTGYDF 305 (825)
T ss_pred C------------------------ChHHHHHHHHHh---cCCCceEEEEEeccCCCcCCCCCCcCcccCChh
Confidence 2 245699999864 3456889999 6655444444443 45678886
No 48
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=99.68 E-value=1.8e-16 Score=152.81 Aligned_cols=86 Identities=35% Similarity=0.639 Sum_probs=79.9
Q ss_pred CceEEEEEccCCcEEEEEccCCCCccccccceecCCCeEEEEcCCCCCCCcccCcccEEEEEEEEeCCeeeeecCCcceE
Q psy9003 780 DECHKAGLLCFMHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATY 859 (1276)
Q Consensus 780 D~a~FalwAP~A~~VsLvGDFN~wd~~~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~~dG~~~~~~DPYAka 859 (1276)
.++.|++|||+|++|+|+||||+|++..++|.+.+.|+|++++|++.+|.+++++|+.|+|+|...+|++.+++||||++
T Consensus 5 ~g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~~~DPyA~~ 84 (99)
T cd02854 5 GGVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWIDRIPAWIKY 84 (99)
T ss_pred CeEEEEEECCCCCEEEEEccCCCCCCcCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEEEcCcceeE
Confidence 46789999999999999999999998889999988999999999988888889999999999998889999999999999
Q ss_pred eecCCC
Q psy9003 860 VTEPPV 865 (1276)
Q Consensus 860 v~~~~~ 865 (1276)
+..++.
T Consensus 85 ~~~~~~ 90 (99)
T cd02854 85 VTQDKE 90 (99)
T ss_pred EEeCCC
Confidence 988765
No 49
>smart00642 Aamy Alpha-amylase domain.
Probab=99.64 E-value=2.9e-16 Score=164.23 Aligned_cols=94 Identities=23% Similarity=0.279 Sum_probs=77.4
Q ss_pred EecCCccc--cCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCccc
Q psy9003 901 SHVGICTQ--EQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQAL 978 (1276)
Q Consensus 901 lHVr~ft~--~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~ 978 (1276)
+.++.|.. ....|+|++++++ |+||++||||+ |||+|+++ . +.. ...+
T Consensus 2 i~~~~F~~~~~~~~G~~~gi~~~-l~yl~~lG~~~----I~l~Pi~~--------------------~--~~~---~~~~ 51 (166)
T smart00642 2 IYPDRFADGNGDGGGDLQGIIEK-LDYLKDLGVTA----IWLSPIFE--------------------S--PQG---YPSY 51 (166)
T ss_pred eeeccccCCCCCCCcCHHHHHHH-HHHHHHCCCCE----EEECccee--------------------C--CCC---CCCC
Confidence 45677753 4568999999997 99999999999 99995443 2 100 1256
Q ss_pred CCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEe
Q psy9003 979 VGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVV 1058 (1276)
Q Consensus 979 WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV 1058 (1276)
|||++.+|+ +++ |+||+++||++||++||++||+||||+|
T Consensus 52 ~gY~~~d~~---------------------~i~-------------------~~~Gt~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 52 HGYDISDYK---------------------QID-------------------PRFGTMEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred CCcCccccC---------------------CCC-------------------cccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 899999998 444 8899999999999999999999999999
Q ss_pred ccccCC
Q psy9003 1059 HSHASK 1064 (1276)
Q Consensus 1059 ~NHt~~ 1064 (1276)
+||++.
T Consensus 92 ~NH~~~ 97 (166)
T smart00642 92 INHTSD 97 (166)
T ss_pred CCCCCC
Confidence 999987
No 50
>PLN03244 alpha-amylase; Provisional
Probab=99.63 E-value=6.8e-16 Score=188.49 Aligned_cols=71 Identities=18% Similarity=0.440 Sum_probs=66.8
Q ss_pred CCccHHHHHHHHHHHHHHHHHHhhccCchHHhhHHHhhccceEecCCcEEEEEEccCCceEEEEeeccCCCcc
Q psy9003 27 LNPYQYEMKRRYGLMVNFLEQFEKHEGGIEKFTTSYNKYGIHVQADNSVRCFEWAPSAQQLYLTGNVSLTPWS 99 (1276)
Q Consensus 27 L~~~~~~~~~Ry~~~~~~~~~i~~~~ggl~~Fs~~y~~fGah~~~~gg~~f~~wAP~A~~v~l~gdfn~~~w~ 99 (1276)
-+.|+.-+|-||+-.++.+.+|.+++++|+.||++|++||.|+....|+.|++|||+|+-.+|+||| |+|+
T Consensus 85 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~g~~r~~~~~~~~~ewapga~~~~~~gdf--n~w~ 155 (872)
T PLN03244 85 DKIFAQFLRERHKALKDLKDEIFKRHFDFQDFASGFEILGMHRHMEHRVDFMDWAPGARYCAIIGDF--NGWS 155 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHhhhhhhhhccccCcccCceeEeecCCcceeeeeccc--cCCC
Confidence 3678999999999999999999999999999999999999999998889999999999999999999 5555
No 51
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.62 E-value=4.8e-15 Score=184.34 Aligned_cols=300 Identities=13% Similarity=-0.010 Sum_probs=162.5
Q ss_pred cCCChHHHHHHHhhhhccCCCCCccccchhhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhccccccccCCC
Q psy9003 274 LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT 353 (1276)
Q Consensus 274 ~~~~ie~~~yli~e~~~~~~~~~~~~~t~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~ 353 (1276)
..++.+++++|++.. .++-..+. .+.|++|-|+..|+++++++|++..-.++..+.+ ..+..+.|+..|+
T Consensus 154 ~~~~~~i~k~Ll~~G-advn~~d~----~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~-----g~t~L~~A~~~~~ 223 (682)
T PHA02876 154 QQDELLIAEMLLEGG-ADVNAKDI----YCITPIHYAAERGNAKMVNLLLSYGADVNIIALD-----DLSVLECAVDSKN 223 (682)
T ss_pred HCCcHHHHHHHHhCC-CCCCCCCC----CCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCC-----CCCHHHHHHHcCC
Confidence 358899999999843 33333333 3556668888899999999999986655533221 1355677788899
Q ss_pred hhhhHHhhhhhccccCCCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCH-hH
Q psy9003 354 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP-EQ 432 (1276)
Q Consensus 354 ie~~~yLi~~~h~~~~~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~-~~ 432 (1276)
+|++++|++....++.+. ..++ .++..++++.+++|+... .+.-..+..+. ||||.|+..++. ++
T Consensus 224 ~~ivk~Ll~~~~~~~~~~-~~L~--------~ai~~~~~~~~~~Ll~~g-~~vn~~d~~g~----TpLh~Aa~~~~~~~i 289 (682)
T PHA02876 224 IDTIKAIIDNRSNINKND-LSLL--------KAIRNEDLETSLLLYDAG-FSVNSIDDCKN----TPLHHASQAPSLSRL 289 (682)
T ss_pred HHHHHHHHhcCCCCCCCc-HHHH--------HHHHcCCHHHHHHHHHCC-CCCCCCCCCCC----CHHHHHHhCCCHHHH
Confidence 999999998655443322 1111 223358999999998754 34444455677 999999988886 57
Q ss_pred HHhhcccccccccCCChhhHHHHHHHHhHhccCC-ChhhHHHh--------------hhhhcccccC-CChhhhhhhhhh
Q psy9003 433 LKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG-TPEQLKYL--------------VDECHKAGLF-GTPEQLKYLVDE 496 (1276)
Q Consensus 433 ~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~-~~~~~~~~--------------v~~~~~a~~~-~~~e~~~~lv~~ 496 (1276)
+++|+..+-.... .+....+.|.- +..++ ..+.++.| .|..|.|... +..+.+++|++.
T Consensus 290 v~lLl~~gadin~-~d~~g~TpLh~----Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~ 364 (682)
T PHA02876 290 VPKLLERGADVNA-KNIKGETPLYL----MAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLEL 364 (682)
T ss_pred HHHHHHCCCCCCC-cCCCCCCHHHH----HHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHc
Confidence 8888765432211 11112111111 11111 12223322 2444444432 344455555555
Q ss_pred hhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCC-CHHHHHHHHHhhhh
Q psy9003 497 CHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG-TPEQLKYLVDECHK 575 (1276)
Q Consensus 497 ~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~-~~e~~~~l~~~~~~ 575 (1276)
.+++|.... ...|+.+.|...|+++++++|++.+++++.-+.. .-|..|.|...+ ..+.+++|++.+++
T Consensus 365 gadin~~d~-----~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~-----g~T~Lh~A~~~~~~~~~vk~Ll~~gad 434 (682)
T PHA02876 365 GANVNARDY-----CDKTPIHYAAVRNNVVIINTLLDYGADIEALSQK-----IGTALHFALCGTNPYMSVKTLIDRGAN 434 (682)
T ss_pred CCCCccCCC-----CCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCC-----CCchHHHHHHcCCHHHHHHHHHhCCCC
Confidence 555554332 2345555566666666666666655555532221 112222222222 23445566665555
Q ss_pred ccCCCChhhhhhhhhhhcccccCC-CHHHHHHHHhhhhhccCC
Q psy9003 576 AGLFGTPEQLKYLVDECHKAGLFG-TPEQLKYLVDECHKAGLF 617 (1276)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~l~~~~~~~~~~ 617 (1276)
+|....+- .|..+-|...| +++.+++|++.++++|.+
T Consensus 435 in~~d~~G-----~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~ 472 (682)
T PHA02876 435 VNSKNKDL-----STPLHYACKKNCKLDVIEMLLDNGADVNAI 472 (682)
T ss_pred CCcCCCCC-----ChHHHHHHHhCCcHHHHHHHHHCCCCCCCC
Confidence 55211111 22333333333 455666666666555544
No 52
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.60 E-value=2.9e-15 Score=186.20 Aligned_cols=296 Identities=13% Similarity=-0.015 Sum_probs=175.2
Q ss_pred CCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCCh
Q psy9003 389 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP 468 (1276)
Q Consensus 389 ~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~ 468 (1276)
+|+.+++++|++..--.+ ..+..|. ||||.|+..|+.++|++|+..+--. ...+.++.. ..+-+...+..
T Consensus 155 ~~~~~i~k~Ll~~Gadvn-~~d~~G~----TpLh~Aa~~G~~~iv~~LL~~Gad~-n~~~~~g~t----~L~~A~~~~~~ 224 (682)
T PHA02876 155 QDELLIAEMLLEGGADVN-AKDIYCI----TPIHYAAERGNAKMVNLLLSYGADV-NIIALDDLS----VLECAVDSKNI 224 (682)
T ss_pred CCcHHHHHHHHhCCCCCC-CCCCCCC----CHHHHHHHCCCHHHHHHHHHCCCCc-CccCCCCCC----HHHHHHHcCCH
Confidence 577888888876554222 3344566 8888888888888888877654211 111112211 11122222333
Q ss_pred hhHHHhhh----------hhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCH-HHHHHHHhhhhh
Q psy9003 469 EQLKYLVD----------ECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP-EQLKYLVDECHK 537 (1276)
Q Consensus 469 ~~~~~~v~----------~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~-e~~~~lv~~~~~ 537 (1276)
+++++++. ..+.|..+++.|.+.+|++.+.++|.... ...|+.+.|+..|++ +.+++|.+.+++
T Consensus 225 ~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~-----~g~TpLh~Aa~~~~~~~iv~lLl~~gad 299 (682)
T PHA02876 225 DTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDD-----CKNTPLHHASQAPSLSRLVPKLLERGAD 299 (682)
T ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-----CCCCHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 44444431 23455567788888888888777776543 346788888888887 588888888888
Q ss_pred cCCCCCcchhhhhhhhhhccccCC-CHHHHHHHHHhhhhccCCCChhhhhhhhhhhccccc-CCCHHHHHHHHhhhhhcc
Q psy9003 538 AGLFGTPEQLKYLVDECHKAGLFG-TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL-FGTPEQLKYLVDECHKAG 615 (1276)
Q Consensus 538 ~~~~~t~~~l~~~~~~~~~~~~~~-~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~l~~~~~~~~ 615 (1276)
+|..+. ..-|..+.|...| +.+.+++|+..++++|.....- .|..+.|.. .++.+.+++|++.++++|
T Consensus 300 in~~d~-----~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g-----~TpLh~A~~~~~~~~iv~lLl~~gadin 369 (682)
T PHA02876 300 VNAKNI-----KGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLY-----ITPLHQASTLDRNKDIVITLLELGANVN 369 (682)
T ss_pred CCCcCC-----CCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCC-----CcHHHHHHHhCCcHHHHHHHHHcCCCCc
Confidence 775544 2334445555677 6888888888888887322211 233333333 346788888888888887
Q ss_pred CCCChhhhhhhHHHhhhccCCCCHHHHHHHHHHHHhhcCCCChHHHhhhhhhhhhcccCCC-hhHHHHHHHHHHhhccCC
Q psy9003 616 LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT-PEQLKYLVDECHKAGLFG 694 (1276)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 694 (1276)
.+-..- .++.+-|...|.++.+++|++.....+. .-...-+++|.|...+. .+.+|+|++.-...+.
T Consensus 370 ~~d~~G-----~TpLh~Aa~~~~~~iv~~Ll~~gad~~~-----~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~-- 437 (682)
T PHA02876 370 ARDYCD-----KTPIHYAAVRNNVVIINTLLDYGADIEA-----LSQKIGTALHFALCGTNPYMSVKTLIDRGANVNS-- 437 (682)
T ss_pred cCCCCC-----CCHHHHHHHcCCHHHHHHHHHCCCCccc-----cCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCc--
Confidence 654433 5677777777888988888864322111 11122357777766554 4567777762211110
Q ss_pred ChhHHHhhHHHHhhcccCC-CHHHHHHHHHH
Q psy9003 695 TPEQLKYLVDECHKAGLFG-TPEQLKYLVDE 724 (1276)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 724 (1276)
+=+.--+.+|-|+..| +++.+++|++.
T Consensus 438 ---~d~~G~TpLh~Aa~~~~~~~iv~lLl~~ 465 (682)
T PHA02876 438 ---KNKDLSTPLHYACKKNCKLDVIEMLLDN 465 (682)
T ss_pred ---CCCCCChHHHHHHHhCCcHHHHHHHHHC
Confidence 0012234566666655 56777777653
No 53
>PHA02946 ankyin-like protein; Provisional
Probab=99.52 E-value=1.2e-13 Score=164.57 Aligned_cols=283 Identities=11% Similarity=-0.001 Sum_probs=163.3
Q ss_pred CChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChh
Q psy9003 390 GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPE 469 (1276)
Q Consensus 390 ~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~ 469 (1276)
++.|+|++|+... +++-..+.++. ||||.|+..|+.++|++||..+-. ....+.+.
T Consensus 50 ~~~~iv~~Ll~~G-advn~~d~~G~----TpLh~Aa~~g~~eiv~lLL~~GAd-in~~d~~g------------------ 105 (446)
T PHA02946 50 LDERFVEELLHRG-YSPNETDDDGN----YPLHIASKINNNRIVAMLLTHGAD-PNACDKQH------------------ 105 (446)
T ss_pred CCHHHHHHHHHCc-CCCCccCCCCC----CHHHHHHHcCCHHHHHHHHHCcCC-CCCCCCCC------------------
Confidence 4677788887643 45555666677 888888888888888877764421 11112121
Q ss_pred hHHHhhhhhcccccC--CChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchh
Q psy9003 470 QLKYLVDECHKAGLF--GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQL 547 (1276)
Q Consensus 470 ~~~~~v~~~~~a~~~--~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l 547 (1276)
.|..|.|... +.+|-+++|+..++++|..... ...|+.+ |+..|+.+++++|+..+++++..+.
T Consensus 106 -----~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~----~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~---- 171 (446)
T PHA02946 106 -----KTPLYYLSGTDDEVIERINLLVQYGAKINNSVDE----EGCGPLL-ACTDPSERVFKKIMSIGFEARIVDK---- 171 (446)
T ss_pred -----CCHHHHHHHcCCchHHHHHHHHHcCCCcccccCC----CCCcHHH-HHHCCChHHHHHHHhccccccccCC----
Confidence 3444443322 3466667777766666642211 1123332 3445777777777777766664444
Q ss_pred hhhhhhhhcccc--CCCHHHHHHHHHhhhhccC--CCChhhhhhhhhhhcccccC--CCHHHHHHHHhhhhhccCCCChh
Q psy9003 548 KYLVDECHKAGL--FGTPEQLKYLVDECHKAGL--FGTPEQLKYLVDECHKAGLF--GTPEQLKYLVDECHKAGLFGTPE 621 (1276)
Q Consensus 548 ~~~~~~~~~~~~--~~~~e~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~e~~~~l~~~~~~~~~~~~~~ 621 (1276)
+.-|..+.|+. .+.++.+++|.+.++++|. +....-|++.+ .+ ++++.+++|+. ++++|.+-..-
T Consensus 172 -~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa-------~~~~~~~~iv~lLl~-gadin~~d~~G 242 (446)
T PHA02946 172 -FGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVC-------SKTVKNVDIINLLLP-STDVNKQNKFG 242 (446)
T ss_pred -CCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH-------HcCCCcHHHHHHHHc-CCCCCCCCCCC
Confidence 33333333332 3446777777777777762 23333333333 33 36777777764 56665443222
Q ss_pred hhhhhHHHhhhccCCCCH-HHHHHHHHHHH--------hhcCCCChHH---H-----hhhhhhhhhcccCCChhHHHHHH
Q psy9003 622 QLKYLVDECHKAGLFGTP-EQLKYLVDECH--------KAGLFGTPEQ---L-----KYLVDECHKAGLFGTPEQLKYLV 684 (1276)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~ 684 (1276)
-++.+-|...++. +.+++|..... .+-+++..+. + ++.-+++|.|..+|+.|.+|+|+
T Consensus 243 -----~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll 317 (446)
T PHA02946 243 -----DSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLL 317 (446)
T ss_pred -----CCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHH
Confidence 3444444444553 55666654211 1111111111 1 12336899999999999999999
Q ss_pred H-------HHHhhccCCChhHHHhhHH-------------HHhhcccCCCHHHHHHHHHH
Q psy9003 685 D-------ECHKAGLFGTPEQLKYLVD-------------ECHKAGLFGTPEQLKYLVDE 724 (1276)
Q Consensus 685 ~-------~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~ 724 (1276)
+ ++|-|-++++.|.+++|+. ++|-|..+++.+.++.|+..
T Consensus 318 ~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~n~~~~G~t~l~~a~~~~~~~~~~~ll~~ 377 (446)
T PHA02946 318 DNDIICEDAMYYAVLSEYETMVDYLLFNHFSVDSVVNGHTCMSECVRLNNPVILSKLMLH 377 (446)
T ss_pred HCCCccccHHHHHHHhCHHHHHHHHHHCCCCCCCccccccHHHHHHHcCCHHHHHHHHhc
Confidence 8 6777777777777877765 47888888888888888873
No 54
>PHA02917 ankyrin-like protein; Provisional
Probab=99.51 E-value=3.8e-13 Score=167.22 Aligned_cols=339 Identities=10% Similarity=-0.057 Sum_probs=194.7
Q ss_pred hhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhccccccc--cCCChhhhHHhhhhhccccCC-CCh---------
Q psy9003 306 ECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG--LFGTPEQLKYLVDECHKAGLF-GTP--------- 373 (1276)
Q Consensus 306 ~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~--~~g~ie~~~yLi~~~h~~~~~-~~~--------- 373 (1276)
.++.|+..|++|++++|++..-.++..+. . .-|+.+.++ ..|+.|+|++|+.-.-.++.. ..+
T Consensus 106 ~~~~a~~~~~~e~vk~Ll~~Gadin~~d~--~---g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~ 180 (661)
T PHA02917 106 FSYMKSKNVDVDLIKVLVEHGFDLSVKCE--N---HRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDY 180 (661)
T ss_pred HHHHHhhcCCHHHHHHHHHcCCCCCccCC--C---CccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccc
Confidence 34567778999999999988665554322 1 123334332 358999999999865443321 111
Q ss_pred -----hhHHHHHhhhc-----ccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCH--hHHHhhccccc
Q psy9003 374 -----EQLKYLVDECH-----KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP--EQLKYLVDECH 441 (1276)
Q Consensus 374 -----e~~~~~~~~~~-----~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~--~~~~yli~~~~ 441 (1276)
....+....++ ...-.++.|+|++||.-. .+.-..+..|. ||||.|+..|++ |+|++|+..
T Consensus 181 ~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~G-advn~~d~~G~----TpLh~A~~~g~~~~eivk~Li~g-- 253 (661)
T PHA02917 181 QPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHG-IKPSSIDKNYC----TALQYYIKSSHIDIDIVKLLMKG-- 253 (661)
T ss_pred cccccccHHHHHHhhcccccccccccCcHHHHHHHHHCC-CCcccCCCCCC----cHHHHHHHcCCCcHHHHHHHHhC--
Confidence 12333222110 011236899999999665 33444466777 999999999986 799999853
Q ss_pred ccccC-CChhhHH-HHHHHHhH----hcc---CCChhhHHHhhhhhc--------ccccCCChhhhhhhhhhhhhhccCC
Q psy9003 442 KAGLF-GTPEQLK-YLVDECHK----AGL---FGTPEQLKYLVDECH--------KAGLFGTPEQLKYLVDECHKAGLFG 504 (1276)
Q Consensus 442 ~~~~~-~~~e~l~-~l~~~~~~----~~~---~~~~~~~~~~v~~~~--------~a~~~~~~e~~~~lv~~~~~~~~~~ 504 (1276)
++..+ .+++... ..-...|- ..+ ....|+++.||.... .+.--++.|-+++|.. ..+
T Consensus 254 ~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 327 (661)
T PHA02917 254 IDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILK------TMN 327 (661)
T ss_pred CcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHH------Hhc
Confidence 22221 1111100 00001110 011 225677777765542 2223355555555552 111
Q ss_pred CHHHHHHHhhhhcccccCCC--HHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHH-hhhhccC--C
Q psy9003 505 TPEQLKYLVDECHKAGLFGT--PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD-ECHKAGL--F 579 (1276)
Q Consensus 505 ~~~~~~~~~t~~~~a~~~g~--~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~-~~~~~~~--~ 579 (1276)
..=+ .+...+++..|+ ++++++|++.++++|...- +..+ ++.+.+.+.+++|+. .++.++. +
T Consensus 328 ~~~~----~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~-----~g~~----~~~~~~~~~i~~LL~~~ga~~~~~~~ 394 (661)
T PHA02917 328 SDVL----QHILIEYMTFGDIDIPLVECMLEYGAVVNKEAI-----HGYF----RNINIDSYTMKYLLKKEGGDAVNHLD 394 (661)
T ss_pred hHHH----HHHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCc-----cccc----hhhcCCHHHHHHHHHhcCCCccccCC
Confidence 1111 223333444555 7799999999999985322 2222 345788999999997 4766662 2
Q ss_pred CChhhhhhhhhhhc-------cccc---------CCCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHHH
Q psy9003 580 GTPEQLKYLVDECH-------KAGL---------FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLK 643 (1276)
Q Consensus 580 ~~~~~~~~~~~~~~-------~~~~---------~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (1276)
.+..-|+..|.+.. -.+. .+.++.+++|+..++++|.+-..- .+.++.|..++..+.++
T Consensus 395 ~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~GAdIN~kd~~G-----~TpLh~Aa~~~~~~~v~ 469 (661)
T PHA02917 395 DGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPYLKDINMIDKRG-----ETLLHKAVRYNKQSLVS 469 (661)
T ss_pred CCCChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHHCCCCCCCCCCCC-----cCHHHHHHHcCCHHHHH
Confidence 22222333231100 0011 235778899999999998765444 67788888889999999
Q ss_pred HHHHHHHhhcCCCChHHHhhhhhhhhhccc-CCChhHHHHHHH
Q psy9003 644 YLVDECHKAGLFGTPEQLKYLVDECHKAGL-FGTPEQLKYLVD 685 (1276)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 685 (1276)
+|+..-...+. .=.+-.+.+|.|.. .++.+++++|+.
T Consensus 470 ~Ll~~GAdin~-----~d~~G~T~L~~A~~~~~~~~iv~~LL~ 507 (661)
T PHA02917 470 LLLESGSDVNI-----RSNNGYTCIAIAINESRNIELLKMLLC 507 (661)
T ss_pred HHHHCcCCCCC-----CCCCCCCHHHHHHHhCCCHHHHHHHHH
Confidence 99874333221 01223457888875 678888888885
No 55
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=99.50 E-value=2.1e-13 Score=170.72 Aligned_cols=82 Identities=18% Similarity=0.283 Sum_probs=69.7
Q ss_pred CcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCccccccccccc
Q psy9003 913 ASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKE 992 (1276)
Q Consensus 913 Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~ 992 (1276)
++|.+++++ ||||++||||+ |||+|+|+ . .+..+|||++.||+
T Consensus 17 ~tf~~~~~~-l~YL~~LGis~----IyLsPi~~--------------------a-------~~gs~hGYdv~D~~----- 59 (879)
T PRK14511 17 FTFDDAAEL-VPYFADLGVSH----LYLSPILA--------------------A-------RPGSTHGYDVVDHT----- 59 (879)
T ss_pred CCHHHHHHH-hHHHHHcCCCE----EEECcCcc--------------------C-------CCCCCCCCCcCCCC-----
Confidence 689999985 99999999999 99995442 1 11235899988888
Q ss_pred cccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcc
Q psy9003 993 MYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNV 1066 (1276)
Q Consensus 993 ~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~ 1066 (1276)
. |||.+|+.++|++||++||++||+||||+|+||++.++
T Consensus 60 ----------------~-------------------idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~~~~~ 98 (879)
T PRK14511 60 ----------------R-------------------INPELGGEEGLRRLAAALRAHGMGLILDIVPNHMAVGG 98 (879)
T ss_pred ----------------C-------------------cCCCCCCHHHHHHHHHHHHHCCCEEEEEeccccccCcC
Confidence 3 44899999999999999999999999999999999765
No 56
>PHA02946 ankyin-like protein; Provisional
Probab=99.49 E-value=2.6e-13 Score=161.80 Aligned_cols=77 Identities=5% Similarity=-0.060 Sum_probs=35.2
Q ss_pred hhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCC--CHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCH-
Q psy9003 487 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG--TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP- 563 (1276)
Q Consensus 487 ~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g--~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~- 563 (1276)
.+.+++|++.+.++|.+.. ...|+.|.|...| +++++++|+. ++++|.-+. +.-|..+.|...++.
T Consensus 188 ~~~v~~Ll~~Gadin~~d~-----~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~-----~G~TpLh~A~~~~~~~ 256 (446)
T PHA02946 188 ASTISWMMKLGISPSKPDH-----DGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNK-----FGDSPLTLLIKTLSPA 256 (446)
T ss_pred HHHHHHHHHcCCCCcccCC-----CCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCC-----CCCCHHHHHHHhCChH
Confidence 3445555555555544332 2345555555543 5555555553 444443322 222333333344442
Q ss_pred HHHHHHHHhhh
Q psy9003 564 EQLKYLVDECH 574 (1276)
Q Consensus 564 e~~~~l~~~~~ 574 (1276)
|.+++|...++
T Consensus 257 ~~~~~Ll~~g~ 267 (446)
T PHA02946 257 HLINKLLSTSN 267 (446)
T ss_pred HHHHHHHhCCC
Confidence 45555555443
No 57
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.49 E-value=1.3e-13 Score=162.75 Aligned_cols=301 Identities=13% Similarity=0.022 Sum_probs=202.7
Q ss_pred ccCCChHHHHHHHhhhhccCCCCCccccchhhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhccccccccCC
Q psy9003 273 GLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG 352 (1276)
Q Consensus 273 ~~~~~ie~~~yli~e~~~~~~~~~~~~~t~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~~~g 352 (1276)
...|++|.|+.|+.+........+.. ..|+++.|+..|+.+++++|++..-..+. .+. ...++.+.|+..|
T Consensus 9 i~~gd~~~v~~ll~~~~~~~n~~~~~----~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~--~~~---~~~t~L~~A~~~~ 79 (434)
T PHA02874 9 IYSGDIEAIEKIIKNKGNCINISVDE----TTTPLIDAIRSGDAKIVELFIKHGADINH--INT---KIPHPLLTAIKIG 79 (434)
T ss_pred HhcCCHHHHHHHHHcCCCCCCCcCCC----CCCHHHHHHHcCCHHHHHHHHHCCCCCCC--CCC---CCCCHHHHHHHcC
Confidence 34567777888876543222222222 34666888889999999999987544432 111 1235667888999
Q ss_pred ChhhhHHhhhhhccccCCCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhH
Q psy9003 353 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQ 432 (1276)
Q Consensus 353 ~ie~~~yLi~~~h~~~~~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~ 432 (1276)
++|++++|++-.-....- .....+.|++++|+.. ..++...+..+. ||||.|+..|+.++
T Consensus 80 ~~~iv~~Ll~~g~~~~~~---------------~~~~~~~~~i~~ll~~-g~d~n~~~~~g~----T~Lh~A~~~~~~~~ 139 (434)
T PHA02874 80 AHDIIKLLIDNGVDTSIL---------------PIPCIEKDMIKTILDC-GIDVNIKDAELK----TFLHYAIKKGDLES 139 (434)
T ss_pred CHHHHHHHHHCCCCCCcc---------------hhccCCHHHHHHHHHC-cCCCCCCCCCCc----cHHHHHHHCCCHHH
Confidence 999999998754311110 1113467899999874 345555667777 99999999999999
Q ss_pred HHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHH
Q psy9003 433 LKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYL 512 (1276)
Q Consensus 433 ~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~ 512 (1276)
|++|+..+.- ++..+... -|..|.|...++.|.+++|++.....+.... ..
T Consensus 140 v~~Ll~~gad-------------------~n~~d~~g-----~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~-----~g 190 (434)
T PHA02874 140 IKMLFEYGAD-------------------VNIEDDNG-----CYPIHIAIKHNFFDIIKLLLEKGAYANVKDN-----NG 190 (434)
T ss_pred HHHHHhCCCC-------------------CCCcCCCC-----CCHHHHHHHCCcHHHHHHHHHCCCCCCCCCC-----CC
Confidence 9999875421 11111112 4677888888999999999998887776554 45
Q ss_pred hhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhh
Q psy9003 513 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 592 (1276)
Q Consensus 513 ~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 592 (1276)
.|+.+.|...|+.+++++|.+.+.+++..+. +.-|..+.|...+ .+.+.+|. .++++|....+ --|..
T Consensus 191 ~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~-----~g~TpL~~A~~~~-~~~i~~Ll-~~~~in~~d~~-----G~TpL 258 (434)
T PHA02874 191 ESPLHNAAEYGDYACIKLLIDHGNHIMNKCK-----NGFTPLHNAIIHN-RSAIELLI-NNASINDQDID-----GSTPL 258 (434)
T ss_pred CCHHHHHHHcCCHHHHHHHHhCCCCCcCCCC-----CCCCHHHHHHHCC-hHHHHHHH-cCCCCCCcCCC-----CCCHH
Confidence 7889999999999999999999988875554 3334445554544 45666666 45666622111 13444
Q ss_pred cccccCC-CHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccCCC-CHHHHHHHHHH
Q psy9003 593 HKAGLFG-TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG-TPEQLKYLVDE 648 (1276)
Q Consensus 593 ~~~~~~~-~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 648 (1276)
+-|..++ +.+.+++|+..++++|.+-+.- -++.+-|..++ ..+.+|.|+..
T Consensus 259 h~A~~~~~~~~iv~~Ll~~gad~n~~d~~g-----~TpL~~A~~~~~~~~~ik~ll~~ 311 (434)
T PHA02874 259 HHAINPPCDIDIIDILLYHKADISIKDNKG-----ENPIDTAFKYINKDPVIKDIIAN 311 (434)
T ss_pred HHHHhcCCcHHHHHHHHHCcCCCCCCCCCC-----CCHHHHHHHhCCccHHHHHHHHh
Confidence 4454555 8899999999999998875544 44555555555 56677777763
No 58
>PHA02917 ankyrin-like protein; Provisional
Probab=99.48 E-value=4.1e-13 Score=166.94 Aligned_cols=381 Identities=11% Similarity=-0.027 Sum_probs=222.3
Q ss_pred CCCcchhhhhhhccccccCCCCccccchhhhhhhcccCCCCHHH----HHhhhhh------------hcccccCCChHHH
Q psy9003 218 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQ----LKYLVDE------------CHKAGLFGTPEQL 281 (1276)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~g~~~~----~~~li~~------------~h~~~~~~~ie~~ 281 (1276)
+++.|++++|++ +.+++- .......+.+|.|+..|..++ ++.|+.. .|.|...+++|+|
T Consensus 45 ~~~~~~v~~Ll~-~ga~v~----~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~v 119 (661)
T PHA02917 45 CNNVEVVKLLLD-SGTNPL----HKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYMKSKNVDVDLI 119 (661)
T ss_pred cCcHHHHHHHHH-CCCCcc----ccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHHHhhcCCHHHH
Confidence 355666676663 344443 222333445577777676443 3445422 1345556899999
Q ss_pred HHHHhhhhccCCCCCccccchhhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhh-----------hhcccccccc
Q psy9003 282 KYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKY-----------LVDECHKAGL 350 (1276)
Q Consensus 282 ~yli~e~~~~~~~~~~~~~t~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~-----------~~~~~~~a~~ 350 (1276)
|+||+- ..|+-..+..|.|.++..+ +...|+.|++++|+++.-.++. .|.-.++ .-|+.|.|+.
T Consensus 120 k~Ll~~-Gadin~~d~~g~T~L~~~~--a~~~~~~eivklLi~~Ga~vn~--~d~~~~~g~~~~~~~~~~~~t~L~~a~~ 194 (661)
T PHA02917 120 KVLVEH-GFDLSVKCENHRSVIENYV--MTDDPVPEIIDLFIENGCSVLY--EDEDDEYGYAYDDYQPRNCGTVLHLYII 194 (661)
T ss_pred HHHHHc-CCCCCccCCCCccHHHHHH--HccCCCHHHHHHHHHcCCCccc--cccccccccccccccccccccHHHHHHh
Confidence 999963 4555444545555554211 1236999999999987644432 1110000 0133444432
Q ss_pred -----------CCChhhhHHhhhhhccccC-CCChhhHHHHHhhhcccccCCCh--hHHHHHhhhcccccCCCChhhhhc
Q psy9003 351 -----------FGTPEQLKYLVDECHKAGL-FGTPEQLKYLVDECHKAGLFGTP--EQLKYLVDECHKAGLFGTPEQLKY 416 (1276)
Q Consensus 351 -----------~g~ie~~~yLi~~~h~~~~-~~~~e~~~~~~~~~~~a~~~~~i--d~vkyLi~~~h~~~~~~~~~~~~~ 416 (1276)
.|+.|+|++||.-.-.++. +.....- .+.|+..|++ |+|++|+. .++..+.....-..
T Consensus 195 ~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~Tp------Lh~A~~~g~~~~eivk~Li~--g~d~~~~~~~~~~~ 266 (661)
T PHA02917 195 SHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTA------LQYYIKSSHIDIDIVKLLMK--GIDNTAYSYIDDLT 266 (661)
T ss_pred hcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcH------HHHHHHcCCCcHHHHHHHHh--CCcccccccccCcc
Confidence 5689999999987765553 2222222 2233334675 79999985 44444322111112
Q ss_pred ccccchhccc---------cCCHhHHHhhccccc-----ccccC---CChhhHHHHHHHHhHhccCCChhhHHHhhhhhc
Q psy9003 417 LVDECHKAGL---------FGTPEQLKYLVDECH-----KAGLF---GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 479 (1276)
Q Consensus 417 ~vt~lh~a~~---------~~~~~~~~yli~~~~-----~~~~~---~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~ 479 (1276)
..|++|.|+. ....++|+.||..+. |.+.+ .+.|-++++.. ..+++=++.. ..
T Consensus 267 ~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~----l~ 336 (661)
T PHA02917 267 CCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILK------TMNSDVLQHI----LI 336 (661)
T ss_pred cccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHH------HhchHHHHHH----HH
Confidence 3477888872 127799999999884 22212 23233333331 1111112111 22
Q ss_pred ccccCCC--hhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHh-hhhhcCCCCCcc--hhhhhhh--
Q psy9003 480 KAGLFGT--PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD-ECHKAGLFGTPE--QLKYLVD-- 552 (1276)
Q Consensus 480 ~a~~~~~--~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~-~~~~~~~~~t~~--~l~~~~~-- 552 (1276)
++...|+ ++-+++|++.++.+|.+.- ...| ++.+.+.+++++|+. .++.++..+.+. .|+..+-
T Consensus 337 ~~~~~g~~~~~~v~~Ll~~GAdvn~~~~-----~g~~----~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~ 407 (661)
T PHA02917 337 EYMTFGDIDIPLVECMLEYGAVVNKEAI-----HGYF----RNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSN 407 (661)
T ss_pred HHHHcCCCcHHHHHHHHHcCCCCCCCCc-----cccc----hhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhc
Confidence 2333454 6689999999999996531 1112 334778889999997 466655333222 4443321
Q ss_pred ----------------hhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccC
Q psy9003 553 ----------------ECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 616 (1276)
Q Consensus 553 ----------------~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~ 616 (1276)
.+.++. +.++.++.|...+++||...... -|..+.|..+++.+.+++|+..++++|.
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~Ll~~GAdIN~kd~~G-----~TpLh~Aa~~~~~~~v~~Ll~~GAdin~ 480 (661)
T PHA02917 408 YGCYNFYTYTYKKGLCDMSYAC--PILSTINICLPYLKDINMIDKRG-----ETLLHKAVRYNKQSLVSLLLESGSDVNI 480 (661)
T ss_pred ccchhhhhhhhhhccchhhhhh--hhHHHHHHHHHCCCCCCCCCCCC-----cCHHHHHHHcCCHHHHHHHHHCcCCCCC
Confidence 111222 25888999999999999333222 4555566678999999999999999988
Q ss_pred CCChhhhhhhHHHhhhccC-CCCHHHHHHHHH
Q psy9003 617 FGTPEQLKYLVDECHKAGL-FGTPEQLKYLVD 647 (1276)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 647 (1276)
+-... .++++.|.. .+..+.++.|+.
T Consensus 481 ~d~~G-----~T~L~~A~~~~~~~~iv~~LL~ 507 (661)
T PHA02917 481 RSNNG-----YTCIAIAINESRNIELLKMLLC 507 (661)
T ss_pred CCCCC-----CCHHHHHHHhCCCHHHHHHHHH
Confidence 76555 667777764 578899998885
No 59
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=99.47 E-value=8.8e-14 Score=171.50 Aligned_cols=95 Identities=15% Similarity=0.019 Sum_probs=75.9
Q ss_pred hccceEecCCcEEEEEEccCCceEEEEeecc-CCCc---c---e------EEEEEccCccccceEEEEEecCCC------
Q psy9003 64 KYGIHVQADNSVRCFEWAPSAQQLYLTGNVS-LTPW---S---I------MEEASLSSIKLIQSIQYILTGVFG------ 124 (1276)
Q Consensus 64 ~fGah~~~~gg~~f~~wAP~A~~v~l~gdfn-~~~w---~---m------~~~~~~~~~~~g~~yky~i~~~~g------ 124 (1276)
.+|||...+ |++|++|||+|++|.|++ |+ |++. . | +|+++||+++.|+.|+|+|.+.++
T Consensus 11 ~lG~~~~~~-~~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~~~gvw~~~i~~~~~g~~Y~y~v~~~~~~~~~~D 88 (605)
T TIGR02104 11 ELGAVYTPE-KTVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRGENGVWSAVLEGDLHGYFYTYQVCINGKWRETVD 88 (605)
T ss_pred CCccEEECC-eeEEEEECCCCCEEEEEE-EcCCCCCccceEEecccCCCCEEEEEECCCCCCCEEEEEEEcCCCeEEEcC
Confidence 799998665 599999999999999998 74 5432 2 5 999999999999999999987443
Q ss_pred -------CCCccccccc--------------------------ccccccCC-----------ChHHHHHH----------
Q psy9003 125 -------TPEQLKYLVD--------------------------ECHKAGLF-----------GTPEQLKY---------- 150 (1276)
Q Consensus 125 -------rp~~as~~~d--------------------------e~h~gs~~-----------~y~e~a~~---------- 150 (1276)
-++.+|+|+| |+|+++|- +|+.+++.
T Consensus 89 Pya~~~~~~~~~s~v~d~~~~~~~~w~~~~~~~~~~~~~~vIYElhv~~ft~~~~~~~~~~G~f~~~~e~~~~~~~g~~~ 168 (605)
T TIGR02104 89 PYAKAVTVNGKRGAVIDLERTNPEGWEKDHRPRLENPEDAIIYELHIRDFSIHENSGVKNKGKYLGLTETGTKGPNGVST 168 (605)
T ss_pred CCcceeccCCCcEEEEcccccCccCcccccCCCCCChhHcEEEEEecchhccCCCCCcCCCCceeeeeccCccccccchh
Confidence 2234566655 99999864 57777765
Q ss_pred HHHHHHhcCc
Q psy9003 151 LVDECHKAGL 160 (1276)
Q Consensus 151 li~y~~~~~y 160 (1276)
-+||+|++|+
T Consensus 169 ~LdyL~~LGv 178 (605)
T TIGR02104 169 GLDYLKELGV 178 (605)
T ss_pred HHHHHHHcCC
Confidence 4899999998
No 60
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.47 E-value=2e-13 Score=131.02 Aligned_cols=91 Identities=13% Similarity=0.103 Sum_probs=77.0
Q ss_pred ccCeeecCceEEEEEccCCcEEEEEccCCCCc----cccccceecCCCeEEEEcCCCCCCCcccCcccEEEEEEEEeCCe
Q psy9003 773 EQLKYLVDECHKAGLLCFMHVVCAAGDFNNWN----REEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGH 848 (1276)
Q Consensus 773 ~G~~y~~D~a~FalwAP~A~~VsLvGDFN~wd----~~~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~~dG~ 848 (1276)
+|+++..++++|++|||+|++|+|+. |++|+ ...++|.+..+|+|++++++...| ..|+|+|.+.++.
T Consensus 1 lGa~~~~~~~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~~~~gvw~~~v~~~~~g-------~~Y~y~i~~~~~~ 72 (100)
T cd02860 1 LGAVYTPEKTTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKRGENGVWSVTLDGDLEG-------YYYLYEVKVYKGE 72 (100)
T ss_pred CCCEEeCCCEEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeecCCCCEEEEEeCCccCC-------cEEEEEEEEeceE
Confidence 47788888999999999999999985 66664 146899988899999999977554 6999999877677
Q ss_pred eeeecCCcceEeecCCCCCcccc
Q psy9003 849 LLDRLSPWATYVTEPPVVGHAYE 871 (1276)
Q Consensus 849 ~~~~~DPYAkav~~~~~~s~v~~ 871 (1276)
....+||||+++..++.+|++++
T Consensus 73 ~~~~~DPyA~~~~~~~~~s~i~d 95 (100)
T cd02860 73 TNEVVDPYAKALSANGERSVDLD 95 (100)
T ss_pred EEEEcCcccEeEeeCCCceEECC
Confidence 77899999999999998887655
No 61
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.47 E-value=1.1e-13 Score=164.20 Aligned_cols=218 Identities=18% Similarity=0.094 Sum_probs=136.8
Q ss_pred cccCCChhHHHHHhhhcccccCCCChhhhhcccccchhcc--ccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhc
Q psy9003 386 AGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG--LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 463 (1276)
Q Consensus 386 a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~--~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~ 463 (1276)
|...|++|++++|+...- ++-..+..+. ||||.|+ ..|+.++|++|+..+. .....
T Consensus 80 a~~~~~~~iv~~Ll~~ga-~i~~~d~~g~----tpL~~A~~~~~~~~~iv~~Ll~~g~-~~~~~---------------- 137 (480)
T PHA03100 80 YNLTDVKEIVKLLLEYGA-NVNAPDNNGI----TPLLYAISKKSNSYSIVEYLLDNGA-NVNIK---------------- 137 (480)
T ss_pred HHhhchHHHHHHHHHCCC-CCCCCCCCCC----chhhHHHhcccChHHHHHHHHHcCC-CCCcc----------------
Confidence 444567777777776433 2234445555 8888888 8888888888776432 11111
Q ss_pred cCCChhhHHHhhhhhcccccCC--ChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCC
Q psy9003 464 LFGTPEQLKYLVDECHKAGLFG--TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLF 541 (1276)
Q Consensus 464 ~~~~~~~~~~~v~~~~~a~~~~--~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~ 541 (1276)
+... .|..|.|...| +.|.+++|++.+.++|.... ...|+.+.|+..|+.+++++|++.+++.+..
T Consensus 138 --~~~g-----~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~-----~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~ 205 (480)
T PHA03100 138 --NSDG-----ENLLHLYLESNKIDLKILKLLIDKGVDINAKNR-----YGYTPLHIAVEKGNIDVIKFLLDNGADINAG 205 (480)
T ss_pred --CCCC-----CcHHHHHHHcCCChHHHHHHHHHCCCCcccccC-----CCCCHHHHHHHhCCHHHHHHHHHcCCCccCC
Confidence 1111 35666666666 77777777777776665443 4467777788888888888888877777643
Q ss_pred CCcc-hhhhhhhhhhccccCCC--HHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCC
Q psy9003 542 GTPE-QLKYLVDECHKAGLFGT--PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG 618 (1276)
Q Consensus 542 ~t~~-~l~~~~~~~~~~~~~~~--~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~ 618 (1276)
+... ...+.-|..+.|...|+ ++.+++|.+.++++|..... ..|..+.|...|++|.+++|++.++++|.+-
T Consensus 206 ~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~-----g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d 280 (480)
T PHA03100 206 DIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVY-----GFTPLHYAVYNNNPEFVKYLLDLGANPNLVN 280 (480)
T ss_pred CCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCC-----CCCHHHHHHHcCCHHHHHHHHHcCCCCCccC
Confidence 3221 22222455666677777 88888888887777732221 2455555567778888888888887776654
Q ss_pred ChhhhhhhHHHhhhccCCCCHHHHHHHHH
Q psy9003 619 TPEQLKYLVDECHKAGLFGTPEQLKYLVD 647 (1276)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (1276)
... -++.+.|...+..+.+++|++
T Consensus 281 ~~g-----~tpl~~A~~~~~~~iv~~Ll~ 304 (480)
T PHA03100 281 KYG-----DTPLHIAILNNNKEIFKLLLN 304 (480)
T ss_pred CCC-----CcHHHHHHHhCCHHHHHHHHh
Confidence 433 445555555666666666665
No 62
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=99.47 E-value=1e-13 Score=168.80 Aligned_cols=103 Identities=26% Similarity=0.301 Sum_probs=89.5
Q ss_pred EEEEEEccCCceEEEEeeccCCCcce------EEEEEccCccccceEEEEEecCCC-----------CCCccccccc---
Q psy9003 75 VRCFEWAPSAQQLYLTGNVSLTPWSI------MEEASLSSIKLIQSIQYILTGVFG-----------TPEQLKYLVD--- 134 (1276)
Q Consensus 75 ~~f~~wAP~A~~v~l~gdfn~~~w~m------~~~~~~~~~~~g~~yky~i~~~~g-----------rp~~as~~~d--- 134 (1276)
|+|++|||+|++|.|+++- ....| +|+++|+++++|..|+|+|.+..- .++..|+|+|
T Consensus 1 v~FrlwAP~A~~V~L~l~~--~~~~m~k~~~GvW~~~v~~~~~G~~Y~y~v~g~~~v~DPya~~~~~~~~~~S~V~d~~~ 78 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLNG--ALHAMQRLGDGWFEITVPPVGPGDRYGYVLDDGTPVPDPASRRQPDGVHGPSQVVDPDR 78 (542)
T ss_pred CEEEEECCCCCEEEEEeCC--CEEeCeECCCCEEEEEECCCCCCCEEEEEEeeeEEecCccccccccCCCCCeEEecCcc
Confidence 5899999999999999854 33446 999999999999999999975111 3456788877
Q ss_pred -------------------ccccccC---CChHHHHHHHHHHHHhcCc------------------------------CC
Q psy9003 135 -------------------ECHKAGL---FGTPEQLKYLVDECHKAGL------------------------------FG 162 (1276)
Q Consensus 135 -------------------e~h~gs~---~~y~e~a~~li~y~~~~~y------------------------------yg 162 (1276)
|+|+++| =+|+.|++.| ||+|++|+ ||
T Consensus 79 ~~w~~~~~~~~~~~~~viYE~hv~~f~~~G~~~gi~~~l-~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~G 157 (542)
T TIGR02402 79 YAWQDTGWRGRPLEEAVIYELHVGTFTPEGTFDAAIEKL-PYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAYG 157 (542)
T ss_pred cCCCCccccCCCccccEEEEEEhhhcCCCCCHHHHHHhh-HHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccccC
Confidence 9999998 7899999997 99999999 99
Q ss_pred CHHHHHHHHHHHHHcCCC
Q psy9003 163 TPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 163 tp~~l~~~vd~~h~~~i~ 180 (1276)
|++||+.||++||++||+
T Consensus 158 ~~~e~k~lV~~aH~~Gi~ 175 (542)
T TIGR02402 158 GPDDLKALVDAAHGLGLG 175 (542)
T ss_pred CHHHHHHHHHHHHHCCCE
Confidence 999999999999999998
No 63
>PHA02730 ankyrin-like protein; Provisional
Probab=99.46 E-value=8.8e-13 Score=162.21 Aligned_cols=370 Identities=9% Similarity=-0.028 Sum_probs=198.3
Q ss_pred hhhhhhcccCCC---CHHHHHhhhhhh--------------cccccCC--ChHHHHHHHhhhhccC--CCCCccccchhh
Q psy9003 246 LVDECHKAGLFG---TPEQLKYLVDEC--------------HKAGLFG--TPEQLKYLVDECHKAG--LFGTPEQLKYLV 304 (1276)
Q Consensus 246 l~~~~~~~~~~g---~~~~~~~li~~~--------------h~~~~~~--~ie~~~yli~e~~~~~--~~~~~~~~t~~~ 304 (1276)
.-+-+|.|+.+| ++|++++|+++. |.|...+ +.|+|++|+..- +++ -..+. .+.
T Consensus 41 G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~-~~~~~~~~~~----~~d 115 (672)
T PHA02730 41 GNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSY-SNASNELTSN----IND 115 (672)
T ss_pred CCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcC-CCCCcccccc----cCC
Confidence 344457777665 477777777554 2222223 699999999832 221 11221 233
Q ss_pred hhhccccc--CCCHHHHHHHhhhhhccCCCCcccch--hhhhccccccccCCChhhhHHhhhhhcccc-------CCCCh
Q psy9003 305 DECHKAGL--FGTPEQLKYLVDECHKAGLFGTPEQL--KYLVDECHKAGLFGTPEQLKYLVDECHKAG-------LFGTP 373 (1276)
Q Consensus 305 ~~~~~a~~--~gsi~~l~~Lv~~~~~~~~~~~~~~~--~~~~~~~~~a~~~g~ie~~~yLi~~~h~~~-------~~~~~ 373 (1276)
+..+.+.. ++.+|.||||+..+ .++++.++..- ...+++-..+.-.+++||||+||+-.-+.+ +-.++
T Consensus 116 ~~l~~y~~s~n~~~~~vk~Li~~~-~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~ 194 (672)
T PHA02730 116 FDLYSYMSSDNIDLRLLKYLIVDK-RIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSD 194 (672)
T ss_pred chHHHHHHhcCCcHHHHHHHHHhc-CCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCC
Confidence 33344444 89999999999632 22222111000 012456667778899999999998754332 11111
Q ss_pred ---hhHH-HHHhhhcccccCCChhHHHHHhhhcccccC-CCChhhhhcccccchh--ccccCCHhHHHhhcc-cccccc-
Q psy9003 374 ---EQLK-YLVDECHKAGLFGTPEQLKYLVDECHKAGL-FGTPEQLKYLVDECHK--AGLFGTPEQLKYLVD-ECHKAG- 444 (1276)
Q Consensus 374 ---e~~~-~~~~~~~~a~~~~~id~vkyLi~~~h~~~~-~~~~~~~~~~vt~lh~--a~~~~~~~~~~yli~-~~~~~~- 444 (1276)
-++- +.++++. ..+++.|++++||.-. +++ ..+..|. ||||. |+..++.|+|++||+ .-+|-.
T Consensus 195 ~c~~~l~~~il~~~~--~~~n~~eiv~lLIs~G--adIN~kd~~G~----TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~ 266 (672)
T PHA02730 195 RCKNSLHYYILSHRE--SESLSKDVIKCLIDNN--VSIHGRDEGGS----LPIQYYWSCSTIDIEIVKLLIKDVDTCSVY 266 (672)
T ss_pred ccchhHHHHHHhhhh--hhccCHHHHHHHHHCC--CCCCCCCCCCC----CHHHHHHHcCcccHHHHHHHHhcccccccc
Confidence 1222 4555543 4689999999999765 343 3566777 99994 667788999999997 222311
Q ss_pred ------------------------cCCChhhHHHHH-------HHHhHhccCCCh-------------------hhHHHh
Q psy9003 445 ------------------------LFGTPEQLKYLV-------DECHKAGLFGTP-------------------EQLKYL 474 (1276)
Q Consensus 445 ------------------------~~~~~e~l~~l~-------~~~~~~~~~~~~-------------------~~~~~~ 474 (1276)
.-.+++-+.+|. +|+..|-..++. .+++.+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~ 346 (672)
T PHA02730 267 DDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAM 346 (672)
T ss_pred ccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHH
Confidence 122223333332 233332201111 112222
Q ss_pred hhhhccccc---CCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCC----HHHHHHHHhhhhhcCCCCCcc--
Q psy9003 475 VDECHKAGL---FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT----PEQLKYLVDECHKAGLFGTPE-- 545 (1276)
Q Consensus 475 v~~~~~a~~---~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~----~e~~~~lv~~~~~~~~~~t~~-- 545 (1276)
. |.=+. .+++|.+++|+..++.+|.+ . ...|+.|.|...++ +|++++|+..+++.+++..+.
T Consensus 347 l---~~Y~~~~~~v~ieIvelLIs~GAdIN~k-~-----~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G 417 (672)
T PHA02730 347 L---INYLHYGDMVSIPILRCMLDNGATMDKT-T-----DNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNG 417 (672)
T ss_pred H---HHHHhcCCcCcHHHHHHHHHCCCCCCcC-C-----CCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCC
Confidence 1 11111 24577777777777777743 2 34677776666553 777787777766433332221
Q ss_pred --hhhhhhhhh----hccccC-CCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCC
Q psy9003 546 --QLKYLVDEC----HKAGLF-GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG 618 (1276)
Q Consensus 546 --~l~~~~~~~----~~~~~~-~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~ 618 (1276)
.|.+.+-+. ..+..+ ..++.+++|+..++++|...... .|..+-|...+..+.+++|+..|+++|.+-
T Consensus 418 ~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G-----~TPLh~Aa~~~~~eive~LI~~GAdIN~~d 492 (672)
T PHA02730 418 RLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNEN-----KTLLYYAVDVNNIQFARRLLEYGASVNTTS 492 (672)
T ss_pred CchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCC-----CCHHHHHHHhCCHHHHHHHHHCCCCCCCCC
Confidence 232211110 000001 13456777777777777222222 233333335677777777777777777665
Q ss_pred ChhhhhhhHHHhhhccC--CCCHHHHHHHHH
Q psy9003 619 TPEQLKYLVDECHKAGL--FGTPEQLKYLVD 647 (1276)
Q Consensus 619 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 647 (1276)
.. ...++++.|.. .+..|.++.|+.
T Consensus 493 ~~----~g~TaL~~Aa~~~~~~~eIv~~LLs 519 (672)
T PHA02730 493 RS----IINTAIQKSSYRRENKTKLVDLLLS 519 (672)
T ss_pred Cc----CCcCHHHHHHHhhcCcHHHHHHHHH
Confidence 41 01355555443 256666666654
No 64
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.46 E-value=1.5e-13 Score=162.95 Aligned_cols=284 Identities=18% Similarity=0.082 Sum_probs=200.9
Q ss_pred hHHHHHHHhhhhccCCCCCccccchhhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhccccc-----cccCC
Q psy9003 278 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHK-----AGLFG 352 (1276)
Q Consensus 278 ie~~~yli~e~~~~~~~~~~~~~t~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~-----a~~~g 352 (1276)
.++++||+.+. +. .........|..|.|+..|+.+++++|++..-..+ ..+. ...+..+. |...|
T Consensus 15 ~~~~~~~~~~~--~~---~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~--~~~~---~~~t~L~~~~~~~a~~~~ 84 (480)
T PHA03100 15 VKNIKYIIMED--DL---NDYSYKKPVLPLYLAKEARNIDVVKILLDNGADIN--SSTK---NNSTPLHYLSNIKYNLTD 84 (480)
T ss_pred HHHHHHHHhcC--cc---chhhhcccchhhhhhhccCCHHHHHHHHHcCCCCC--Cccc---cCcCHHHHHHHHHHHhhc
Confidence 46777777643 21 11233456677888999999999999998764433 2211 11244556 88889
Q ss_pred ChhhhHHhhhhhccccC-CCChhhHHHHHhhhcccc--cCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccC-
Q psy9003 353 TPEQLKYLVDECHKAGL-FGTPEQLKYLVDECHKAG--LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG- 428 (1276)
Q Consensus 353 ~ie~~~yLi~~~h~~~~-~~~~e~~~~~~~~~~~a~--~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~- 428 (1276)
++|++++|++....++. ..... |-.+.|+ ..|+.|+|++|+.. .+++...+..+. |+||.|+..+
T Consensus 85 ~~~iv~~Ll~~ga~i~~~d~~g~------tpL~~A~~~~~~~~~iv~~Ll~~-g~~~~~~~~~g~----t~L~~A~~~~~ 153 (480)
T PHA03100 85 VKEIVKLLLEYGANVNAPDNNGI------TPLLYAISKKSNSYSIVEYLLDN-GANVNIKNSDGE----NLLHLYLESNK 153 (480)
T ss_pred hHHHHHHHHHCCCCCCCCCCCCC------chhhHHHhcccChHHHHHHHHHc-CCCCCccCCCCC----cHHHHHHHcCC
Confidence 99999999987655542 11122 2222333 46899999999974 355666677788 9999999999
Q ss_pred -CHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCC-H
Q psy9003 429 -TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT-P 506 (1276)
Q Consensus 429 -~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~-~ 506 (1276)
+.+++++|+..+....... ... .|..|.|...|..|.+++|++.+++.+.... .
T Consensus 154 ~~~~iv~~Ll~~g~din~~d-------------------~~g-----~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~ 209 (480)
T PHA03100 154 IDLKILKLLIDKGVDINAKN-------------------RYG-----YTPLHIAVEKGNIDVIKFLLDNGADINAGDIET 209 (480)
T ss_pred ChHHHHHHHHHCCCCccccc-------------------CCC-----CCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCC
Confidence 8999999987643211111 111 5778888888999999999998888876542 1
Q ss_pred HHHHHHhhhhcccccCCC--HHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhh
Q psy9003 507 EQLKYLVDECHKAGLFGT--PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQ 584 (1276)
Q Consensus 507 ~~~~~~~t~~~~a~~~g~--~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~ 584 (1276)
.......|..+.|...|+ ++++++|++.++++|..+. +.-|..+.|...|+.|.+++|++.++++|.....-
T Consensus 210 ~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~-----~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g- 283 (480)
T PHA03100 210 LLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDV-----YGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYG- 283 (480)
T ss_pred CcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCC-----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCC-
Confidence 122223788889999999 9999999999988886554 45566677779999999999999999888433222
Q ss_pred hhhhhhhhcccccCCCHHHHHHHHhhhhhccC
Q psy9003 585 LKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 616 (1276)
Q Consensus 585 ~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~ 616 (1276)
-|..+.|...++.+.+++|++.+++++.
T Consensus 284 ----~tpl~~A~~~~~~~iv~~Ll~~g~~i~~ 311 (480)
T PHA03100 284 ----DTPLHIAILNNNKEIFKLLLNNGPSIKT 311 (480)
T ss_pred ----CcHHHHHHHhCCHHHHHHHHhcCCCHHH
Confidence 3555566688999999999999887753
No 65
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=99.44 E-value=1.4e-12 Score=171.82 Aligned_cols=92 Identities=16% Similarity=0.193 Sum_probs=76.6
Q ss_pred CceEEEEecCCccccCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCC
Q psy9003 895 NLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESH 974 (1276)
Q Consensus 895 d~vIYElHVr~ft~~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~ 974 (1276)
+..+|-+..+. .++|.+++++ ||||++||||+ |||+|+|+ . .
T Consensus 743 P~atyrlq~~~------~~tf~~~~~~-l~Yl~~LGv~~----i~lsPi~~--------------------a-------~ 784 (1693)
T PRK14507 743 PRATYRLQFHK------DFTFADAEAI-LPYLAALGISH----VYASPILK--------------------A-------R 784 (1693)
T ss_pred cceeEEEEeCC------CCCHHHHHHH-hHHHHHcCCCE----EEECCCcC--------------------C-------C
Confidence 45688888764 3789999985 99999999999 99995443 1 1
Q ss_pred CcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEE
Q psy9003 975 DQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVL 1054 (1276)
Q Consensus 975 ~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VI 1054 (1276)
+..+|||++.||+ + |||.+|+.++|++||++||++||+||
T Consensus 785 ~gs~hGYdv~D~~---------------------~-------------------idp~lG~~edf~~Lv~~ah~~Gi~vi 824 (1693)
T PRK14507 785 PGSTHGYDIVDHS---------------------Q-------------------INPEIGGEEGFERFCAALKAHGLGQL 824 (1693)
T ss_pred CCCCCCCCCCCCC---------------------c-------------------cCcccCCHHHHHHHHHHHHHCCCEEE
Confidence 1235899988888 3 44999999999999999999999999
Q ss_pred EEEeccccCC
Q psy9003 1055 LDVVHSHASK 1064 (1276)
Q Consensus 1055 LDvV~NHt~~ 1064 (1276)
||+|+||++.
T Consensus 825 lDiV~NH~~~ 834 (1693)
T PRK14507 825 LDIVPNHMGV 834 (1693)
T ss_pred EEecccccCC
Confidence 9999999984
No 66
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=99.41 E-value=4.7e-13 Score=123.95 Aligned_cols=80 Identities=25% Similarity=0.324 Sum_probs=67.6
Q ss_pred cccCeeecC--ceEEEEEccCCcEEEEEccCCC-Cccccccce-ecCCCeEEEEcCCCCCCCcccCcc-cEEEEEEEEeC
Q psy9003 772 PEQLKYLVD--ECHKAGLLCFMHVVCAAGDFNN-WNREEFAYK-KLDFGKWELVLPPNPDGSCKLTHL-SQVKLVVRNQH 846 (1276)
Q Consensus 772 p~G~~y~~D--~a~FalwAP~A~~VsLvGDFN~-wd~~~~pM~-r~~~GVWsl~Ip~~~~G~~~i~hG-s~YkYrV~~~d 846 (1276)
|+|+++..+ +++|++|||+|++|+|++++++ |....++|. +.+.|+|++++++. +++| .+|+|+|...+
T Consensus 1 plG~~~~~~~~~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~~~~G~w~~~~~~~------~~~g~~~Y~y~i~~~~ 74 (85)
T PF02922_consen 1 PLGAHYTEDGGGVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRKDDDGVWEVTVPGD------LPPGGYYYKYRIDGDD 74 (85)
T ss_dssp SSEEEEESSCTEEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEECTTTEEEEEEEGC------GTTTT-EEEEEEEETT
T ss_pred CcCcEEECCCCEEEEEEECCCCCEEEEEEEeeecCCCceEEeeecCCCCEEEEEEcCC------cCCCCEEEEEEEEeCC
Confidence 789999987 9999999999999999999998 888899999 58899999999953 2344 59999999888
Q ss_pred CeeeeecCCcc
Q psy9003 847 GHLLDRLSPWA 857 (1276)
Q Consensus 847 G~~~~~~DPYA 857 (1276)
|.....+||||
T Consensus 75 g~~~~~~DPYA 85 (85)
T PF02922_consen 75 GETPEVVDPYA 85 (85)
T ss_dssp TEEEEET-TT-
T ss_pred CcEEEEeCCCC
Confidence 88889999997
No 67
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.41 E-value=2.8e-13 Score=158.26 Aligned_cols=226 Identities=17% Similarity=0.087 Sum_probs=149.9
Q ss_pred hhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhccccccccCCChhhhHHhhhhhccccCCCChhhHHHHHhhhc
Q psy9003 305 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 384 (1276)
Q Consensus 305 ~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~ie~~~yLi~~~h~~~~~~~~e~~~~~~~~~~ 384 (1276)
+.++.|+..|+++++++|++..-..+ ..+ ....|+.|.|+..|+.|++++|++-....+... .+ ..+..+
T Consensus 4 ~~L~~A~~~g~~~iv~~Ll~~g~~~n--~~~---~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~-~~----~~t~L~ 73 (413)
T PHA02875 4 VALCDAILFGELDIARRLLDIGINPN--FEI---YDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKY-PD----IESELH 73 (413)
T ss_pred hHHHHHHHhCCHHHHHHHHHCCCCCC--ccC---CCCCCHHHHHHHcCCHHHHHHHHhCCCCccccC-CC----cccHHH
Confidence 44566666777777777776533222 111 122455666777777777777776543222211 11 112334
Q ss_pred ccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhcc
Q psy9003 385 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 464 (1276)
Q Consensus 385 ~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~ 464 (1276)
.|+..|++++|++|+.....++...+..+. ||||.|+..|+.++|++|+..+.. +...
T Consensus 74 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~----tpL~~A~~~~~~~iv~~Ll~~gad-~~~~----------------- 131 (413)
T PHA02875 74 DAVEEGDVKAVEELLDLGKFADDVFYKDGM----TPLHLATILKKLDIMKLLIARGAD-PDIP----------------- 131 (413)
T ss_pred HHHHCCCHHHHHHHHHcCCcccccccCCCC----CHHHHHHHhCCHHHHHHHHhCCCC-CCCC-----------------
Confidence 445567888888888765544444445566 899999988999999888876422 1111
Q ss_pred CCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCc
Q psy9003 465 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP 544 (1276)
Q Consensus 465 ~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~ 544 (1276)
+... .|..|.|...|..|.+++|++.....+.... ...|+.+.|+..|++|++++|++.++++|..+..
T Consensus 132 -~~~g-----~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~-----~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~ 200 (413)
T PHA02875 132 -NTDK-----FSPLHLAVMMGDIKGIELLIDHKACLDIEDC-----CGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKN 200 (413)
T ss_pred -CCCC-----CCHHHHHHHcCCHHHHHHHHhcCCCCCCCCC-----CCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCC
Confidence 1222 4677888888888888888888777776554 4578889999999999999999999988854432
Q ss_pred chhhhhhhhhhccccCCCHHHHHHHHHhhhhcc
Q psy9003 545 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 577 (1276)
Q Consensus 545 ~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~ 577 (1276)
+ ..+-.+.|...|+.|.+++|++.++++|
T Consensus 201 ~----~~t~l~~A~~~~~~~iv~~Ll~~gad~n 229 (413)
T PHA02875 201 G----CVAALCYAIENNKIDIVRLFIKRGADCN 229 (413)
T ss_pred C----CchHHHHHHHcCCHHHHHHHHHCCcCcc
Confidence 1 1234455668899999999999999998
No 68
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.38 E-value=1.7e-12 Score=153.34 Aligned_cols=269 Identities=13% Similarity=0.023 Sum_probs=161.1
Q ss_pred ccccCCChhhhHHhhhhhccccCCCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccc
Q psy9003 347 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 426 (1276)
Q Consensus 347 ~a~~~g~ie~~~yLi~~~h~~~~~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~ 426 (1276)
.|+..|++|+|++|+...- ..++...+ ...|-.+.|+..|+.|+|++|++.. +++...+..+. ||||.|+.
T Consensus 7 ~ai~~gd~~~v~~ll~~~~-~~~n~~~~---~~~tpL~~A~~~g~~~iv~~Ll~~G-a~~n~~~~~~~----t~L~~A~~ 77 (434)
T PHA02874 7 MCIYSGDIEAIEKIIKNKG-NCINISVD---ETTTPLIDAIRSGDAKIVELFIKHG-ADINHINTKIP----HPLLTAIK 77 (434)
T ss_pred HHHhcCCHHHHHHHHHcCC-CCCCCcCC---CCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCC----CHHHHHHH
Confidence 4667777777777775432 11221111 1235556666677777777777532 33333444455 77777777
Q ss_pred cCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCH
Q psy9003 427 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP 506 (1276)
Q Consensus 427 ~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~ 506 (1276)
.|+.++|++|+..+--. + ..+....+.|.+++|++.+.+++....
T Consensus 78 ~~~~~iv~~Ll~~g~~~----~------------------------------~~~~~~~~~~~i~~ll~~g~d~n~~~~- 122 (434)
T PHA02874 78 IGAHDIIKLLIDNGVDT----S------------------------------ILPIPCIEKDMIKTILDCGIDVNIKDA- 122 (434)
T ss_pred cCCHHHHHHHHHCCCCC----C------------------------------cchhccCCHHHHHHHHHCcCCCCCCCC-
Confidence 77777777777543210 0 001112234566666666666654432
Q ss_pred HHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhh
Q psy9003 507 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLK 586 (1276)
Q Consensus 507 ~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~ 586 (1276)
...|+.+.|+..|++|++++|+..++++|..+. ...|..|.|...|+.|.+++|++.++.+|......
T Consensus 123 ----~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~-----~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g--- 190 (434)
T PHA02874 123 ----ELKTFLHYAIKKGDLESIKMLFEYGADVNIEDD-----NGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNG--- 190 (434)
T ss_pred ----CCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCC-----CCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCC---
Confidence 235778888888888888888888777765443 34455566667888888888888888777332221
Q ss_pred hhhhhhcccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHHHHHHHHHHhhcCCCChHHHhhhhh
Q psy9003 587 YLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 666 (1276)
Q Consensus 587 ~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (1276)
-|..+.|...|+.+.+++|++.+++++.+-..- -++.+.|..++. +.++.|.. .++-+... ..--+
T Consensus 191 --~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g-----~TpL~~A~~~~~-~~i~~Ll~---~~~in~~d---~~G~T 256 (434)
T PHA02874 191 --ESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNG-----FTPLHNAIIHNR-SAIELLIN---NASINDQD---IDGST 256 (434)
T ss_pred --CCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCC-----CCHHHHHHHCCh-HHHHHHHc---CCCCCCcC---CCCCC
Confidence 344555557888888888888888776654433 455555555543 45555542 11111110 11234
Q ss_pred hhhhcccCC-ChhHHHHHHH
Q psy9003 667 ECHKAGLFG-TPEQLKYLVD 685 (1276)
Q Consensus 667 ~~~~~~~~~-~~~~~~~~~~ 685 (1276)
++|.|..++ +.+.+++|+.
T Consensus 257 pLh~A~~~~~~~~iv~~Ll~ 276 (434)
T PHA02874 257 PLHHAINPPCDIDIIDILLY 276 (434)
T ss_pred HHHHHHhcCCcHHHHHHHHH
Confidence 788888765 7788888876
No 69
>PHA02730 ankyrin-like protein; Provisional
Probab=99.35 E-value=8.9e-12 Score=153.49 Aligned_cols=374 Identities=11% Similarity=-0.016 Sum_probs=208.3
Q ss_pred hHHHHHHHhhhhccCCCCCccccchhhhhhcccccCC---CHHHHHHHhhhhhccCCCCcccchhhhhccccccccCC--
Q psy9003 278 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG---TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG-- 352 (1276)
Q Consensus 278 ie~~~yli~e~~~~~~~~~~~~~t~~~~~~~~a~~~g---si~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~~~g-- 352 (1276)
-.-+|..|.-|+-.-...+..|.|-| |-|+..| +.|++++|+++.-.++.. |. ..-|+.|.|..+|
T Consensus 20 ~~~~~~~~~~~~~in~~kd~~G~TaL----h~A~~~~~~~~~eivklLLs~GAdin~k--D~---~G~TPLh~Aa~~~~~ 90 (672)
T PHA02730 20 YKKIKLEIETCHNLSKHIDRRGNNAL----HCYVSNKCDTDIKIVRLLLSRGVERLCR--NN---EGLTPLGVYSKRKYV 90 (672)
T ss_pred HHHHHHHHHHhcchhhhcCCCCCcHH----HHHHHcCCcCcHHHHHHHHhCCCCCccc--CC---CCCChHHHHHHcCCC
Confidence 34455555533111111233444444 5555565 589999998765544422 21 2245666666656
Q ss_pred ChhhhHHhhhhhccccC-----CCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCCh-----hhhhcccccch
Q psy9003 353 TPEQLKYLVDECHKAGL-----FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP-----EQLKYLVDECH 422 (1276)
Q Consensus 353 ~ie~~~yLi~~~h~~~~-----~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~-----~~~~~~vt~lh 422 (1276)
+.|+|++|+.-.-.... -+...+-+|..+. .+++|+|||||.-.-++|..+.+ .+. ++++
T Consensus 91 ~~eIv~~Ll~~~~~~~~~~~~~~~d~~l~~y~~s~------n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~----~~~y 160 (672)
T PHA02730 91 KSQIVHLLISSYSNASNELTSNINDFDLYSYMSSD------NIDLRLLKYLIVDKRIRPSKNTNYYIHCLGL----VDIY 160 (672)
T ss_pred cHHHHHHHHhcCCCCCcccccccCCchHHHHHHhc------CCcHHHHHHHHHhcCCChhhhhhhhccccch----hhhh
Confidence 78999999876432211 1334455554421 37888888888755556654432 344 8888
Q ss_pred hccccCCHhHHHhhcccccccc-c--CCC-h--hhH-HHHH-HH-HhHhccCCChhhHHHhh--------------hhhc
Q psy9003 423 KAGLFGTPEQLKYLVDECHKAG-L--FGT-P--EQL-KYLV-DE-CHKAGLFGTPEQLKYLV--------------DECH 479 (1276)
Q Consensus 423 ~a~~~~~~~~~~yli~~~~~~~-~--~~~-~--e~l-~~l~-~~-~~~~~~~~~~~~~~~~v--------------~~~~ 479 (1276)
.|+..+++|+||.||..+-+-- - .+. . ..- .+|. .+ ++...-+++.|++|.|+ |..|
T Consensus 161 l~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh 240 (672)
T PHA02730 161 VTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQ 240 (672)
T ss_pred HhcCCCchHHHHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence 8888888888888887643320 0 011 0 000 1111 11 22224666777777774 6676
Q ss_pred c--cccCCChhhhhhhhh------------------hhhhhcc--------CCCHHHHHHHh-------------hhhc-
Q psy9003 480 K--AGLFGTPEQLKYLVD------------------ECHKAGL--------FGTPEQLKYLV-------------DECH- 517 (1276)
Q Consensus 480 ~--a~~~~~~e~~~~lv~------------------~~~~~~~--------~~~~~~~~~~~-------------t~~~- 517 (1276)
+ +...|..|-+++|+. ++++-.. .+..+.|+.++ |+.-
T Consensus 241 ~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~ 320 (672)
T PHA02730 241 YYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDS 320 (672)
T ss_pred HHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccc
Confidence 4 555666788888877 1111110 11223322220 0011
Q ss_pred ------------ccc-------------------cCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCC----
Q psy9003 518 ------------KAG-------------------LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT---- 562 (1276)
Q Consensus 518 ------------~a~-------------------~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~---- 562 (1276)
|++ ...++|++++|+..++++|.. . +.-|..|.|...++
T Consensus 321 ~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k-~-----~G~TpLH~Aa~~nnn~i~ 394 (672)
T PHA02730 321 REYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDKT-T-----DNNYPLHDYFVNNNNIVD 394 (672)
T ss_pred cccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCcC-C-----CCCcHHHHHHHHcCCcch
Confidence 111 136789999999999888853 2 44566666655553
Q ss_pred HHHHHHHHHhhhh--cc--CCCChhhhhhh-hhhhcc---cccC-CCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhc
Q psy9003 563 PEQLKYLVDECHK--AG--LFGTPEQLKYL-VDECHK---AGLF-GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 633 (1276)
Q Consensus 563 ~e~~~~l~~~~~~--~~--~~~~~~~~~~~-~~~~~~---~~~~-~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (1276)
+|.+++|+..+++ +| .+.....|++. ...... +... ..++.+++|+..++++|.|-+.. .++++-|
T Consensus 395 ~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G-----~TPLh~A 469 (672)
T PHA02730 395 VNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNEN-----KTLLYYA 469 (672)
T ss_pred HHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCC-----CCHHHHH
Confidence 8999999988874 54 12222222221 100000 0000 13466899999999988876665 6677777
Q ss_pred cCCCCHHHHHHHHHHHHhhcCCCChHHHhhhhhhhhhccc--CCChhHHHHHHH
Q psy9003 634 GLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL--FGTPEQLKYLVD 685 (1276)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 685 (1276)
...+..+.+++|+..-+..+-.-- ...-+++|.|.. .|+.++++.|+.
T Consensus 470 a~~~~~eive~LI~~GAdIN~~d~----~~g~TaL~~Aa~~~~~~~eIv~~LLs 519 (672)
T PHA02730 470 VDVNNIQFARRLLEYGASVNTTSR----SIINTAIQKSSYRRENKTKLVDLLLS 519 (672)
T ss_pred HHhCCHHHHHHHHHCCCCCCCCCC----cCCcCHHHHHHHhhcCcHHHHHHHHH
Confidence 777888888888764333221000 012457777765 467888888875
No 70
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.35 E-value=2.8e-11 Score=151.39 Aligned_cols=64 Identities=11% Similarity=-0.011 Sum_probs=44.6
Q ss_pred hhhhhhhccccCCC-----HHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCH-----HHHHHHHhhhhhccCC
Q psy9003 549 YLVDECHKAGLFGT-----PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP-----EQLKYLVDECHKAGLF 617 (1276)
Q Consensus 549 ~~~~~~~~~~~~~~-----~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----e~~~~l~~~~~~~~~~ 617 (1276)
+.-|..|.|...|+ +|.+++|+..++++|.....- .|..+-|...|.. |.+++|++.++.++..
T Consensus 496 ~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~~d~~G-----~TPLh~A~~~g~~~~~~~eIvk~LL~~ga~~~~~ 569 (764)
T PHA02716 496 SGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINIPTKNG-----VTPLMLTMRNNRLSGHQWYIVKNILDKRPNVDIV 569 (764)
T ss_pred CCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCcccCCCC-----CCHHHHHHHcCCccccHHHHHHHHHhcCCCcchH
Confidence 34444455545554 466799999999999543333 5667777788865 9999999988887554
No 71
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.33 E-value=2.3e-12 Score=150.61 Aligned_cols=225 Identities=17% Similarity=0.095 Sum_probs=162.4
Q ss_pred ccccccCCChhhhHHhhhhhccccC-CCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchh
Q psy9003 345 CHKAGLFGTPEQLKYLVDECHKAGL-FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHK 423 (1276)
Q Consensus 345 ~~~a~~~g~ie~~~yLi~~~h~~~~-~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~ 423 (1276)
.+.|+..|++|+|++|++..-..+. ..... |-.+.|+..|+.|+|++|+... .++...+.++. ||||.
T Consensus 6 L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~------tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~~~----t~L~~ 74 (413)
T PHA02875 6 LCDAILFGELDIARRLLDIGINPNFEIYDGI------SPIKLAMKFRDSEAIKLLMKHG-AIPDVKYPDIE----SELHD 74 (413)
T ss_pred HHHHHHhCCHHHHHHHHHCCCCCCccCCCCC------CHHHHHHHcCCHHHHHHHHhCC-CCccccCCCcc----cHHHH
Confidence 3567778999999999985433332 11222 2233444568999999999754 35555555666 99999
Q ss_pred ccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccC
Q psy9003 424 AGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLF 503 (1276)
Q Consensus 424 a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~ 503 (1276)
|+..|+.++|++|+..+....-..+ .+. .|..|.|...|+.|.+++|++.+++.+..
T Consensus 75 A~~~g~~~~v~~Ll~~~~~~~~~~~------------------~~g-----~tpL~~A~~~~~~~iv~~Ll~~gad~~~~ 131 (413)
T PHA02875 75 AVEEGDVKAVEELLDLGKFADDVFY------------------KDG-----MTPLHLATILKKLDIMKLLIARGADPDIP 131 (413)
T ss_pred HHHCCCHHHHHHHHHcCCccccccc------------------CCC-----CCHHHHHHHhCCHHHHHHHHhCCCCCCCC
Confidence 9999999999999976543211111 111 36778888899999999999998888866
Q ss_pred CCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChh
Q psy9003 504 GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPE 583 (1276)
Q Consensus 504 ~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~ 583 (1276)
.. ...|+.|.|+..|+++.+++|++.+++.+..+. +.-|-.+.|...|++|.+++|++.++++|......
T Consensus 132 ~~-----~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~-----~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~ 201 (413)
T PHA02875 132 NT-----DKFSPLHLAVMMGDIKGIELLIDHKACLDIEDC-----CGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNG 201 (413)
T ss_pred CC-----CCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCC-----CCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCC
Confidence 54 347889999999999999999998888775554 44566667778999999999999999998322211
Q ss_pred hhhhhhhhhcccccCCCHHHHHHHHhhhhhccCC
Q psy9003 584 QLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLF 617 (1276)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~ 617 (1276)
.-+..+-|...|..|.+++|++.++++|..
T Consensus 202 ----~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~ 231 (413)
T PHA02875 202 ----CVAALCYAIENNKIDIVRLFIKRGADCNIM 231 (413)
T ss_pred ----CchHHHHHHHcCCHHHHHHHHHCCcCcchH
Confidence 012333355889999999999999999865
No 72
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.33 E-value=3.2e-12 Score=152.83 Aligned_cols=278 Identities=13% Similarity=0.022 Sum_probs=181.0
Q ss_pred cccccCCChHHHHHHHhhhhccCCCCCccccchhhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhccccccc
Q psy9003 270 HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 349 (1276)
Q Consensus 270 h~~~~~~~ie~~~yli~e~~~~~~~~~~~~~t~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~ 349 (1276)
|.|...+++|+|++|++. ..++-..+..| .|++|.|+..|+.+.+++|+.......+. +..+..+.|+
T Consensus 42 h~A~~~g~~e~vk~Ll~~-gadvn~~d~~g----~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~-------~~~~~l~~a~ 109 (477)
T PHA02878 42 HQAVEARNLDVVKSLLTR-GHNVNQPDHRD----LTPLHIICKEPNKLGMKEMIRSINKCSVF-------YTLVAIKDAF 109 (477)
T ss_pred HHHHHcCCHHHHHHHHHC-CCCCCCCCCCC----CCHHHHHHHCccHhHHHHHHHHHhccccc-------cchhhHHHHH
Confidence 344444556666666653 23443344344 45557788899999999999875433332 2345567788
Q ss_pred cCCChhhhHHhhhhhccccCCCChhhHHHHHhhhcccccCC--ChhHHHHHhhhcccccCCCChhhhhcccccchhcccc
Q psy9003 350 LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG--TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLF 427 (1276)
Q Consensus 350 ~~g~ie~~~yLi~~~h~~~~~~~~e~~~~~~~~~~~a~~~~--~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~ 427 (1276)
..|++|++++|+...... ..+.+... +.. ....+ +.|++++|+...-..+......+. ||||.|+..
T Consensus 110 ~~~~~ei~~~Ll~~~~~~--~~~~~~~~--~~~---~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~----tpLh~A~~~ 178 (477)
T PHA02878 110 NNRNVEIFKIILTNRYKN--IQTIDLVY--IDK---KSKDDIIEAEITKLLLSYGADINMKDRHKGN----TALHYATEN 178 (477)
T ss_pred HcCCHHHHHHHHhCcccC--cccCcHHH--Hhh---ccchhhHHHHHHHHHHHcCCCCCccCCCCCC----CHHHHHHhC
Confidence 899999999998542211 11222111 111 11123 345999999865544433333378 999999999
Q ss_pred CCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHH
Q psy9003 428 GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPE 507 (1276)
Q Consensus 428 ~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~ 507 (1276)
|+.+++++|+..+-- ++..+... .|..|.|..+|..+.+++|++.+.++|.+..
T Consensus 179 ~~~~iv~~Ll~~gad-------------------~n~~d~~g-----~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~-- 232 (477)
T PHA02878 179 KDQRLTELLLSYGAN-------------------VNIPDKTN-----NSPLHHAVKHYNKPIVHILLENGASTDARDK-- 232 (477)
T ss_pred CCHHHHHHHHHCCCC-------------------CCCcCCCC-----CCHHHHHHHhCCHHHHHHHHHcCCCCCCCCC--
Confidence 999999999875421 11111122 4778888889999999999999988887654
Q ss_pred HHHHHhhhhcccccC-CCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhcc--CCCChhh
Q psy9003 508 QLKYLVDECHKAGLF-GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG--LFGTPEQ 584 (1276)
Q Consensus 508 ~~~~~~t~~~~a~~~-g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~--~~~~~~~ 584 (1276)
...|+.+.|+.. ++++++++|++.++++|..+.. +.-|..+.| .++.+.+++|++.++++| .+....-
T Consensus 233 ---~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~----~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~Tp 303 (477)
T PHA02878 233 ---CGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYI----LGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTP 303 (477)
T ss_pred ---CCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCC----CCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence 456888888865 7999999999999998865431 234555555 467899999999999999 3333333
Q ss_pred hhhhhhhhcccccCCCHHHHHHHHhhh
Q psy9003 585 LKYLVDECHKAGLFGTPEQLKYLVDEC 611 (1276)
Q Consensus 585 ~~~~~~~~~~~~~~~~~e~~~~l~~~~ 611 (1276)
+.+.|. ....+|..++|+...
T Consensus 304 L~~A~~------~~~~~~~~~~li~~~ 324 (477)
T PHA02878 304 LSSAVK------QYLCINIGRILISNI 324 (477)
T ss_pred HHHHHH------HcCccchHHHHHHHH
Confidence 444331 123466777776543
No 73
>PRK03705 glycogen debranching enzyme; Provisional
Probab=99.32 E-value=4.2e-12 Score=157.44 Aligned_cols=57 Identities=14% Similarity=0.123 Sum_probs=47.9
Q ss_pred hccceEecCCcEEEEEEccCCceEEEEeecc-CCCcc---e------EEEEEccCccccceEEEEEecC
Q psy9003 64 KYGIHVQADNSVRCFEWAPSAQQLYLTGNVS-LTPWS---I------MEEASLSSIKLIQSIQYILTGV 122 (1276)
Q Consensus 64 ~fGah~~~~gg~~f~~wAP~A~~v~l~gdfn-~~~w~---m------~~~~~~~~~~~g~~yky~i~~~ 122 (1276)
-+||+...+ |+.|++|||+|++|.|+. |+ ++.+. | ||+++||++.+|+.|+|+|.++
T Consensus 11 pLGa~~~~~-g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~~gvW~~~v~~~~~G~~Y~yrv~g~ 77 (658)
T PRK03705 11 PLGAHYDGQ-GVNFTLFSAHAERVELCV-FDENGQEQRYDLPARSGDIWHGYLPGARPGLRYGYRVHGP 77 (658)
T ss_pred CcceEEeCC-CEEEEEECCCCCEEEEEE-EcCCCCeeeEeeeeccCCEEEEEECCCCCCCEEEEEEccc
Confidence 489998654 699999999999999998 74 32222 5 9999999999999999999864
No 74
>PHA02791 ankyrin-like protein; Provisional
Probab=99.31 E-value=7.5e-12 Score=141.51 Aligned_cols=206 Identities=13% Similarity=0.011 Sum_probs=113.8
Q ss_pred CCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCCh
Q psy9003 389 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP 468 (1276)
Q Consensus 389 ~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~ 468 (1276)
+++-|++++||.. .. -..+.++. ||||.|+..|+.+++++|+..+-.... .+
T Consensus 9 ~~~~~~~~~Lis~--~a-~~~D~~G~----TpLh~Aa~~g~~eiv~~Ll~~ga~~n~---------------------~d 60 (284)
T PHA02791 9 WKSKQLKSFLSSK--DA-FKADVHGH----SALYYAIADNNVRLVCTLLNAGALKNL---------------------LE 60 (284)
T ss_pred cCHHHHHHHHHhC--CC-CCCCCCCC----cHHHHHHHcCCHHHHHHHHHCcCCCcC---------------------CC
Confidence 4677888888872 22 24566677 888888888888888888865421110 00
Q ss_pred hhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhh
Q psy9003 469 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLK 548 (1276)
Q Consensus 469 ~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~ 548 (1276)
. -|..|.|...|+.|.+++|+..+++++.... ...|+.+.|+..|+.|++++|+..+++++..+...
T Consensus 61 ~-----~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~-----~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g--- 127 (284)
T PHA02791 61 N-----EFPLHQAATLEDTKIVKILLFSGMDDSQFDD-----KGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTG--- 127 (284)
T ss_pred C-----CCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC-----CCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCC---
Confidence 1 2555666666666666666665555554333 34566666666666666666666666555322210
Q ss_pred hhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHH
Q psy9003 549 YLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 628 (1276)
Q Consensus 549 ~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~ 628 (1276)
.-|..+.|...|+.|.+++|++.+..+. +.+ ...|..|-|...|++|.+++|++.++++|.+-+.- .+
T Consensus 128 -~~TpL~~Aa~~g~~eivk~LL~~~~~~~-d~~-----~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g-----~t 195 (284)
T PHA02791 128 -WKTSFYHAVMLNDVSIVSYFLSEIPSTF-DLA-----ILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLL-----FI 195 (284)
T ss_pred -CcHHHHHHHHcCCHHHHHHHHhcCCccc-ccc-----cCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCC-----CC
Confidence 0133344446666666666665432221 100 11345555556666666666666666665442211 21
Q ss_pred H-hhhccCCCCHHHHHHHHH
Q psy9003 629 E-CHKAGLFGTPEQLKYLVD 647 (1276)
Q Consensus 629 ~-~~~~~~~~~~~~~~~~~~ 647 (1276)
. ++-|...|++|.+++|++
T Consensus 196 ~~L~~Aa~~~~~e~v~lLl~ 215 (284)
T PHA02791 196 PDIKLAIDNKDLEMLQALFK 215 (284)
T ss_pred hHHHHHHHcCCHHHHHHHHH
Confidence 1 344444566666666665
No 75
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.30 E-value=1.2e-11 Score=154.67 Aligned_cols=216 Identities=7% Similarity=-0.090 Sum_probs=111.4
Q ss_pred CCChHHHHHHHhhhhccCCCCCccccchhhhhhcccccCCC--HHHHHHHhhhhhccCCCCcccchhhhhccccccccCC
Q psy9003 275 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT--PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG 352 (1276)
Q Consensus 275 ~~~ie~~~yli~e~~~~~~~~~~~~~t~~~~~~~~a~~~gs--i~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~~~g 352 (1276)
.+++|+|++|++. .+++-..+..|.| ++|.|+..|+ .|++++|++..-.++ ..+......+..+..++..+
T Consensus 189 ~~~~eIVklLLe~-GADVN~kD~~G~T----PLH~Aa~~g~~~~eIVklLLe~GADVN--~kD~~G~TPLh~Ai~~a~n~ 261 (764)
T PHA02716 189 YVDIDILEWLCNN-GVNVNLQNNHLIT----PLHTYLITGNVCASVIKKIIELGGDMD--MKCVNGMSPIMTYIINIDNI 261 (764)
T ss_pred cCCHHHHHHHHHc-CCCCCCCCCCCCC----HHHHHHHcCCCCHHHHHHHHHcCCCCC--CCCCCCCCHHHHHHHhhhcc
Confidence 3456777777763 2444444433333 3344555664 367777776653333 22222211111111233456
Q ss_pred ChhhhHHhhhhhccccCCCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhcc--ccCCH
Q psy9003 353 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG--LFGTP 430 (1276)
Q Consensus 353 ~ie~~~yLi~~~h~~~~~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~--~~~~~ 430 (1276)
+.|+++.|++........+.+..+...+ .|...|++|+|++|+.. ..+....+..|. ||||.|+ ..++.
T Consensus 262 ~~EIvkiLie~~d~n~~~~~~~~L~~~i----~AA~~g~leiVklLLe~-GAdIN~kD~~G~----TPLH~Aaa~~~~~~ 332 (764)
T PHA02716 262 NPEITNIYIESLDGNKVKNIPMILHSYI----TLARNIDISVVYSFLQP-GVKLHYKDSAGR----TCLHQYILRHNIST 332 (764)
T ss_pred CHHHHHHHHHhccccccccchhhhHHHH----HHHHcCCHHHHHHHHhC-CCceeccCCCCC----CHHHHHHHHhCCCc
Confidence 7777777766543333333332221111 12234777777777753 233444455666 7777654 23566
Q ss_pred hHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhccccc--------------CCChhhhhhhhhh
Q psy9003 431 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL--------------FGTPEQLKYLVDE 496 (1276)
Q Consensus 431 ~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~--------------~~~~e~~~~lv~~ 496 (1276)
+++++|+..+ .+..+.+.. . .|..|.|.. ++..|.+++|++.
T Consensus 333 eIVklLLe~G-ADIN~kD~~------------------G-----~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~ 388 (764)
T PHA02716 333 DIIKLLHEYG-NDLNEPDNI------------------G-----NTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISL 388 (764)
T ss_pred hHHHHHHHcC-CCCccCCCC------------------C-----CCHHHHHHHhhhhhccccccccccChHHHHHHHHHC
Confidence 7777766543 122111111 1 455665532 2566777777776
Q ss_pred hhhhccCCCHHHHHHHhhhhc----ccccCCCHHHHHHHHhhh
Q psy9003 497 CHKAGLFGTPEQLKYLVDECH----KAGLFGTPEQLKYLVDEC 535 (1276)
Q Consensus 497 ~~~~~~~~~~~~~~~~~t~~~----~a~~~g~~e~~~~lv~~~ 535 (1276)
+++++.+.. ...|+.+ .|...+..+++++|+...
T Consensus 389 GADIn~kn~-----~G~TPLh~y~~~a~n~~~~dIvklLis~~ 426 (764)
T PHA02716 389 GADITAVNC-----LGYTPLTSYICTAQNYMYYDIIDCLISDK 426 (764)
T ss_pred CCCCCCcCC-----CCCChHHHHHHHHHhcChHHHHHHHHhCc
Confidence 666665544 5577776 344556777777777654
No 76
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.30 E-value=5.9e-12 Score=121.75 Aligned_cols=86 Identities=16% Similarity=0.105 Sum_probs=69.1
Q ss_pred cccCeeecCceEEEEEccCCcEEEEEccCCCCc-cccccceecCCCeEEEEcCCCCCCCcccCcccEEEEEEEEe----C
Q psy9003 772 PEQLKYLVDECHKAGLLCFMHVVCAAGDFNNWN-REEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQ----H 846 (1276)
Q Consensus 772 p~G~~y~~D~a~FalwAP~A~~VsLvGDFN~wd-~~~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~~----d 846 (1276)
|+|+++..++++|++|||+|++|+|+. |+++. ...++|.+.++|+|++.+++... |..|+|+|+++ +
T Consensus 1 plGa~~~~~g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~~GvW~~~v~~~~~-------g~~Y~y~i~g~~~p~~ 72 (103)
T cd02856 1 PLGATLDGEGCNFAVHSENATRIELCL-FDEDGSETRLPLTEEYGGVWHGFLPGIKA-------GQRYGFRVHGPYDPER 72 (103)
T ss_pred CCccEEeCCCeEEEEECCCCCEEEEEE-EeCCCCEEEEEcccccCCEEEEEECCCCC-------CCEEEEEECCccCccc
Confidence 678999999999999999999999986 44443 45689988889999999997755 46999999761 1
Q ss_pred C----eeeeecCCcceEeecCCC
Q psy9003 847 G----HLLDRLSPWATYVTEPPV 865 (1276)
Q Consensus 847 G----~~~~~~DPYAkav~~~~~ 865 (1276)
| .....+||||+++.....
T Consensus 73 ~~~~~~~~~~~DPYA~~~~~~~~ 95 (103)
T cd02856 73 GLRFNPAKLLLDPYARALDGPLA 95 (103)
T ss_pred CcccCCCeEEecCCcceEcCCcc
Confidence 2 235789999999976544
No 77
>PHA02791 ankyrin-like protein; Provisional
Probab=99.30 E-value=5.1e-12 Score=142.87 Aligned_cols=176 Identities=13% Similarity=0.016 Sum_probs=117.7
Q ss_pred cCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCC
Q psy9003 388 LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT 467 (1276)
Q Consensus 388 ~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~ 467 (1276)
..|++|+|++|+. ..++.-..+.++. ||||.|+..|+.+++++||..+--...++.
T Consensus 70 ~~g~~eiV~lLL~-~Gadvn~~d~~G~----TpLh~Aa~~g~~eivk~Ll~~gadin~~~~------------------- 125 (284)
T PHA02791 70 TLEDTKIVKILLF-SGMDDSQFDDKGN----TALYYAVDSGNMQTVKLFVKKNWRLMFYGK------------------- 125 (284)
T ss_pred HCCCHHHHHHHHH-CCCCCCCCCCCCC----CHHHHHHHcCCHHHHHHHHHCCCCcCccCC-------------------
Confidence 3566777777764 2344445566677 888888888888888888865421111110
Q ss_pred hhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchh
Q psy9003 468 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQL 547 (1276)
Q Consensus 468 ~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l 547 (1276)
.. --|..|.|...|..|.+++|+.....+. .. ....|+.|.|...|++|++++|++.++++|..+.
T Consensus 126 ~g----~~TpL~~Aa~~g~~eivk~LL~~~~~~~--d~----~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~---- 191 (284)
T PHA02791 126 TG----WKTSFYHAVMLNDVSIVSYFLSEIPSTF--DL----AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNS---- 191 (284)
T ss_pred CC----CcHHHHHHHHcCCHHHHHHHHhcCCccc--cc----ccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccC----
Confidence 01 0145566666777777777766432111 10 1236899999999999999999999988875544
Q ss_pred hhhhhh-hhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhc
Q psy9003 548 KYLVDE-CHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 614 (1276)
Q Consensus 548 ~~~~~~-~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~ 614 (1276)
+..|. .+.|...|++|.+++|++.++++|..... +..-|+-|.+|+|.+.-.|.
T Consensus 192 -~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~------------~~~l~~~e~~~~ll~~~~~~ 246 (284)
T PHA02791 192 -LLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLE------------NVLLDDAEIAKMIIEKHVEY 246 (284)
T ss_pred -CCCChHHHHHHHcCCHHHHHHHHHCCCCCccCccc------------CccCCCHHHHHHHHHhhhhh
Confidence 33333 57777999999999999999888733221 23448899999999887776
No 78
>KOG4177|consensus
Probab=99.30 E-value=3.9e-12 Score=162.00 Aligned_cols=481 Identities=19% Similarity=0.155 Sum_probs=274.6
Q ss_pred cccccCCCCcchhhhhhhccccccCCCCccccchhhhhhhcccCCCCHHHHHhhhhh--------------hcccccCCC
Q psy9003 212 CHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDE--------------CHKAGLFGT 277 (1276)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~g~~~~~~~li~~--------------~h~~~~~~~ 277 (1276)
+|.++.++..+|.+.|.+. ....+.. .+=.++.+|-|-..|..+.++.|+.. .||+.+.++
T Consensus 58 l~~aa~~~~~~v~~~ll~~---~a~v~~~--~~~~~~plh~a~~~~~a~~v~~ll~~ga~~~~~~~~~lTpLh~aa~~g~ 132 (1143)
T KOG4177|consen 58 LHIAAHYGNENVAELLLNR---GAIVNAT--ARNGITPLHVASKRGDAEMVKLLLCRGAQIDARDRDGLTPLHCAARKGH 132 (1143)
T ss_pred HHHHhhhhhhhhhhhhhcc---ccccCcc--cccCccHHHHHHhhcchhHHHHHHhccCchhhcccCCCcchhhhccccc
Confidence 4555555556666666532 2222211 01113335666666666666666653 477778888
Q ss_pred hHHHHHHHhhhhccCCCC-CccccchhhhhhcccccCCCHHHHHHHhh-----------hhhccCCCCcccchhh-----
Q psy9003 278 PEQLKYLVDECHKAGLFG-TPEQLKYLVDECHKAGLFGTPEQLKYLVD-----------ECHKAGLFGTPEQLKY----- 340 (1276)
Q Consensus 278 ie~~~yli~e~~~~~~~~-~~~~~t~~~~~~~~a~~~gsi~~l~~Lv~-----------~~~~~~~~~~~~~~~~----- 340 (1276)
++++.+|.. +|+|+.. ++.|.+.+ +.++. +.-.++|.+ -+||-..-....++..
T Consensus 133 ~~~~~~ll~--~~a~~~~k~~~g~t~l----~~a~~---~~~~~ll~~~~~~d~l~~~~~~~~~~~~~~~ll~~~~~~~~ 203 (1143)
T KOG4177|consen 133 VQVIELLLQ--HGAPINIKTKNGLSPL----HMAAQ---VACARLLLEYKAPDYLRLHVAAHCGHARVAKLLLDKKADPN 203 (1143)
T ss_pred HHHHHHHHH--ccCCCcccccCCCCch----hhhcc---hhhhHHhhhcccchhhhhhHHhhcchHHHHhhhhcccCCcc
Confidence 888888888 5565543 44444444 43333 333333322 2222220000000000
Q ss_pred -----hhccccccccCCChhhhHHhhhhhccccCCCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhh
Q psy9003 341 -----LVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLK 415 (1276)
Q Consensus 341 -----~~~~~~~a~~~g~ie~~~yLi~~~h~~~~~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~ 415 (1276)
-.|+.+.||-.+.|+++-+|+--. +.+...++ ..++..+-|.-.|+++|+++|+-.+=|-+ +.+..++
T Consensus 204 a~~~~~~tpl~~a~~~nri~~~eLll~~g--adv~a~d~---~gl~~lh~a~~~g~~~i~~~l~~~ga~~~-~~~vr~~- 276 (1143)
T KOG4177|consen 204 ASALNGFTPLHIACKKNRIKVVELLLKHG--ADVSAKDE---SGLTPLHVAAFMGHLDIVKLLLQHGASVN-VSTVRGE- 276 (1143)
T ss_pred ccccCCCCchhhhccccccceeeeeeecc--CcCCcccc---cCccHHHHHHhccchhHHHHHHhcccccC-ccccccc-
Confidence 035666667777777776663322 22222222 13344455555799999999998766433 4566788
Q ss_pred cccccchhccccCCHhHHHhhcccccc--------------cccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhccc
Q psy9003 416 YLVDECHKAGLFGTPEQLKYLVDECHK--------------AGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 481 (1276)
Q Consensus 416 ~~vt~lh~a~~~~~~~~~~yli~~~~~--------------~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a 481 (1276)
||+|.||+.+..|+.+||+..+-. ++-.+-.+...++......++-.++.. .+..|.+
T Consensus 277 ---tplh~AA~~~~~e~~~~ll~~ga~~~~~~~~~kt~l~~a~~~g~~~i~~~~l~~~~~~~aar~~g-----~t~lHla 348 (1143)
T KOG4177|consen 277 ---TPLHMAARAGQVEVCKLLLQNGADVLAKARDDQTPLHIASRLGHEEIVHLLLQAGATPNAARTAG-----YTPLHLA 348 (1143)
T ss_pred ---CcchhhhccchhhhHhhhhccCcccccccccccChhhhhcccchHHHHHHHhhccCCccccCcCC-----cccccHh
Confidence 999999999999999999865322 222222223222222222222222222 5667777
Q ss_pred ccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCC
Q psy9003 482 GLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG 561 (1276)
Q Consensus 482 ~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~ 561 (1276)
.-++..|-+.+|-+.++.-..- -++.+|+++-|+..|..+++.+|-..+...+.-.- ..+|-.+.+-.-+
T Consensus 349 a~~~~~~~~~~l~~~~~~~~~a-----~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk-----~gvTplh~aa~~~ 418 (1143)
T KOG4177|consen 349 AKEGQVEVAGALLEHGAQRRQA-----EEKGFTPLHLAVKSGRVSVVELLLEAGADPNSAGK-----NGVTPLHVAAHYG 418 (1143)
T ss_pred hhhhhHHHHHHhhccccccCcc-----cccCCcchhhhcccCchhHHHhhhhccCCcccCCC-----CCcceeeehhhcc
Confidence 7666666444443333332211 12448999999999999999999999888654444 6777788888888
Q ss_pred CHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCC-CHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHH
Q psy9003 562 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG-TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPE 640 (1276)
Q Consensus 562 ~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (1276)
+...++.+++.++..|.... ..-|..|.|...| ..+..-++...+.++|..+..= ++..+-|.--|+.|
T Consensus 419 ~~~~v~l~l~~gA~~~~~~~-----lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G-----~T~Lhlaaq~Gh~~ 488 (1143)
T KOG4177|consen 419 NPRVVKLLLKRGASPNAKAK-----LGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQG-----FTPLHLAAQEGHTE 488 (1143)
T ss_pred CcceEEEEeccCCChhhHhh-----cCCChhhhhhhcccHhhhhhhHhhcCCCcchhcccc-----CcchhhhhccCCch
Confidence 88888888887777763221 1245666666777 6666677777788887765544 55444444448888
Q ss_pred HHHHHHHHHHhhcCCCChHHHhhhhhhhhhcccCCChhHHHHHHH--------------HHHhhccCCChhHHHhhHH--
Q psy9003 641 QLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD--------------ECHKAGLFGTPEQLKYLVD-- 704 (1276)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~-- 704 (1276)
.++.|.+-..- .. .-.+..+..+|.|+--+++..++.+++ .+|.|-.++++..||+|++
T Consensus 489 ~~~llle~~~~----~~-~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~g 563 (1143)
T KOG4177|consen 489 VVQLLLEGGAN----DN-LDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHG 563 (1143)
T ss_pred HHHHhhhcCCc----cC-ccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCC
Confidence 88777773310 11 112333344444444444444444443 4444444444444444444
Q ss_pred ------------HHhhcccCCCHHHHHHHHHH--------------HHhccCCCCchhhhhhhhhhhc
Q psy9003 705 ------------ECHKAGLFGTPEQLKYLVDE--------------CHKAGLFGTPEQLKYLVDECHK 746 (1276)
Q Consensus 705 ------------~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 746 (1276)
.+|.|+.+|+-+++-+||.- ++.|=..|.+..+|++...=+.
T Consensus 564 Adv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~ 631 (1143)
T KOG4177|consen 564 ADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTAT 631 (1143)
T ss_pred ccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHHhcccchhhHHHhccCc
Confidence 47888888888888888765 5566666666777766654433
No 79
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=99.29 E-value=4.8e-12 Score=122.30 Aligned_cols=54 Identities=26% Similarity=0.428 Sum_probs=46.6
Q ss_pred cCCcEEEEEEccCCceEEEEeecc-CCCcc--e------EEEEEccC-------ccccceEEEEEecCCC
Q psy9003 71 ADNSVRCFEWAPSAQQLYLTGNVS-LTPWS--I------MEEASLSS-------IKLIQSIQYILTGVFG 124 (1276)
Q Consensus 71 ~~gg~~f~~wAP~A~~v~l~gdfn-~~~w~--m------~~~~~~~~-------~~~g~~yky~i~~~~g 124 (1276)
+++|++||+|||+|++|+|+|||| |+... | +|+++||+ ++.|+.|||+|.+++|
T Consensus 3 ~~~g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G 72 (99)
T cd02854 3 EDGGVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSG 72 (99)
T ss_pred CCCeEEEEEECCCCCEEEEEccCCCCCCcCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCCC
Confidence 366899999999999999999995 43322 6 99999999 5799999999999888
No 80
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.28 E-value=5.3e-12 Score=150.93 Aligned_cols=283 Identities=12% Similarity=-0.025 Sum_probs=176.1
Q ss_pred chhhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhccccccccCCChhhhHHhhhhhccccCCCChhhHHHHH
Q psy9003 301 KYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLV 380 (1276)
Q Consensus 301 t~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~ie~~~yLi~~~h~~~~~~~~e~~~~~~ 380 (1276)
....|++|.|+..|+.|.+++|++... +++..+. ...|+.|.|+..|+.+.+++|+..........+ .
T Consensus 35 ~~~~tPLh~A~~~g~~e~vk~Ll~~ga--dvn~~d~---~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~-------~ 102 (477)
T PHA02878 35 LIPFIPLHQAVEARNLDVVKSLLTRGH--NVNQPDH---RDLTPLHIICKEPNKLGMKEMIRSINKCSVFYT-------L 102 (477)
T ss_pred ccCcchHHHHHHcCCHHHHHHHHHCCC--CCCCCCC---CCCCHHHHHHHCccHhHHHHHHHHHhccccccc-------h
Confidence 345667888999999999999998754 3333321 335788889999999999999876543333211 1
Q ss_pred hhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCC--HhHHHhhcccccccccCCChhhHHHHHHH
Q psy9003 381 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT--PEQLKYLVDECHKAGLFGTPEQLKYLVDE 458 (1276)
Q Consensus 381 ~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~--~~~~~yli~~~~~~~~~~~~e~l~~l~~~ 458 (1276)
+..+.|+..|+.|++++|+..-....-..+. ..+..+...+. .+++++|+..
T Consensus 103 ~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~-------~~~~~~~~~~~~~~~iv~~Ll~~------------------- 156 (477)
T PHA02878 103 VAIKDAFNNRNVEIFKIILTNRYKNIQTIDL-------VYIDKKSKDDIIEAEITKLLLSY------------------- 156 (477)
T ss_pred hhHHHHHHcCCHHHHHHHHhCcccCcccCcH-------HHHhhccchhhHHHHHHHHHHHc-------------------
Confidence 2223344467888888887542111000000 00111111111 2244444433
Q ss_pred HhHhccCCCh-hhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhh
Q psy9003 459 CHKAGLFGTP-EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHK 537 (1276)
Q Consensus 459 ~~~~~~~~~~-~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~ 537 (1276)
...++..+.. . .|..|.|..+|..|.+++|++.++++|.... ...|+.+.|...|+.+++++|++.+++
T Consensus 157 gadin~~~~~~g-----~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~-----~g~tpLh~A~~~~~~~iv~~Ll~~ga~ 226 (477)
T PHA02878 157 GADINMKDRHKG-----NTALHYATENKDQRLTELLLSYGANVNIPDK-----TNNSPLHHAVKHYNKPIVHILLENGAS 226 (477)
T ss_pred CCCCCccCCCCC-----CCHHHHHHhCCCHHHHHHHHHCCCCCCCcCC-----CCCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence 3333322222 2 5778888889999999999998888876553 346888889999999999999999988
Q ss_pred cCCCCCcchhhhhhhhhhccccC-CCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccC
Q psy9003 538 AGLFGTPEQLKYLVDECHKAGLF-GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 616 (1276)
Q Consensus 538 ~~~~~t~~~l~~~~~~~~~~~~~-~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~ 616 (1276)
+|..+. +.-|..+.|... ++++.+++|++.++++|...+. ...|..+-| .++.+.+++|++.++++|.
T Consensus 227 in~~d~-----~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~----~g~TpLh~A--~~~~~~v~~Ll~~gadin~ 295 (477)
T PHA02878 227 TDARDK-----CGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYI----LGLTALHSS--IKSERKLKLLLEYGADINS 295 (477)
T ss_pred CCCCCC-----CCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCC----CCCCHHHHH--ccCHHHHHHHHHCCCCCCC
Confidence 886554 333444444443 6899999999999988844321 123555555 4678889999999999887
Q ss_pred CCChhhhhhhHHHhhhcc-CCCCHHHHHHHHH
Q psy9003 617 FGTPEQLKYLVDECHKAG-LFGTPEQLKYLVD 647 (1276)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 647 (1276)
.-..- -+..+.|. .+..++..++|+.
T Consensus 296 ~d~~g-----~TpL~~A~~~~~~~~~~~~li~ 322 (477)
T PHA02878 296 LNSYK-----LTPLSSAVKQYLCINIGRILIS 322 (477)
T ss_pred cCCCC-----CCHHHHHHHHcCccchHHHHHH
Confidence 54433 23333332 2335566666665
No 81
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=99.28 E-value=1.2e-11 Score=154.34 Aligned_cols=56 Identities=14% Similarity=0.116 Sum_probs=46.2
Q ss_pred hccceEecCCcEEEEEEccCCceEEEEeecc-CC--Ccc---e------EEEEEccCccccceEEEEEec
Q psy9003 64 KYGIHVQADNSVRCFEWAPSAQQLYLTGNVS-LT--PWS---I------MEEASLSSIKLIQSIQYILTG 121 (1276)
Q Consensus 64 ~fGah~~~~gg~~f~~wAP~A~~v~l~gdfn-~~--~w~---m------~~~~~~~~~~~g~~yky~i~~ 121 (1276)
.+||+...+ |++|++|||+|++|.|. -|+ ++ ++. | ||+++||++.+|+.|+|||.+
T Consensus 6 ~LGa~~~~~-g~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~~~~gvW~~~v~~~~~g~~Y~yrv~g 73 (688)
T TIGR02100 6 PLGATWDGQ-GVNFALFSANAEKVELC-LFDAQGEKEEARLPLPERTDDIWHGYLPGAQPGQLYGYRVHG 73 (688)
T ss_pred CCCeEEeCC-cEEEEEECCCCCEEEEE-EEcCCCCceeeEEecccCCCCEEEEEECCCCCCCEEEEEEee
Confidence 489998654 59999999999999987 452 21 222 5 999999999999999999987
No 82
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=99.26 E-value=1.3e-11 Score=156.22 Aligned_cols=95 Identities=22% Similarity=0.165 Sum_probs=76.4
Q ss_pred ccceEecCCcEEEEEEccCCceEEEEeecc-CCCcc---e-------EEEEEccCccccceEEEEEecC---CC------
Q psy9003 65 YGIHVQADNSVRCFEWAPSAQQLYLTGNVS-LTPWS---I-------MEEASLSSIKLIQSIQYILTGV---FG------ 124 (1276)
Q Consensus 65 fGah~~~~gg~~f~~wAP~A~~v~l~gdfn-~~~w~---m-------~~~~~~~~~~~g~~yky~i~~~---~g------ 124 (1276)
||||... +|++|++|||+|++|.|++.++ |+.+. | ||++++|+...|+.|+|+|... .|
T Consensus 128 LGa~~~~-~gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~~~~GVWsv~v~g~~~G~~Y~Y~V~v~~p~~G~v~~~~ 206 (898)
T TIGR02103 128 LGATLTD-SGVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRDSTSGVWSAEGGSSWKGAYYRYEVTVYHPSTGKVETYL 206 (898)
T ss_pred CCcEEeC-CcEEEEEECCCCCEEEEEEEcCCCCccceEeCccCCCCCEEEEEECcCCCCCEeEEEEEEecCCCCeECCeE
Confidence 9999864 4799999999999999997763 33333 5 9999999999999999988731 12
Q ss_pred ----------CCCccccccc------------------------------cccccc---------------CCChHHHHH
Q psy9003 125 ----------TPEQLKYLVD------------------------------ECHKAG---------------LFGTPEQLK 149 (1276)
Q Consensus 125 ----------rp~~as~~~d------------------------------e~h~gs---------------~~~y~e~a~ 149 (1276)
+|++.|+|+| |+|+++ |..+.|...
T Consensus 207 v~DPYA~als~n~~~S~VvDl~~~~~~p~~W~~~~~p~p~~~~~~d~iIYElHVRDFS~~d~s~~~~~rGtYla~tE~~t 286 (898)
T TIGR02103 207 VTDPYSVSLSANSEYSQVVDLNDPALKPEGWDALAMPKPQLASFADMVLYELHIRDFSANDESVPAELRGKYLAFTAADS 286 (898)
T ss_pred EeCcCcceEcCCCCCeEEeCCccccCCCcchhhcccccCCcCCCcccEEEEEeccccccCCCCCCcCcCceeeehhccch
Confidence 6777777776 999987 667777777
Q ss_pred HHHHHHH---hcCc
Q psy9003 150 YLVDECH---KAGL 160 (1276)
Q Consensus 150 ~li~y~~---~~~y 160 (1276)
..|+||| ++|+
T Consensus 287 ~gi~hLk~L~eLGV 300 (898)
T TIGR02103 287 AGVQHLKKLADAGV 300 (898)
T ss_pred hhhHHHHHHHhCCC
Confidence 7888887 6799
No 83
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.26 E-value=2.6e-11 Score=145.89 Aligned_cols=216 Identities=10% Similarity=-0.052 Sum_probs=126.1
Q ss_pred CCChhHHHHHhhhcccccCCCChhhhhcccccchhccc---cCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccC
Q psy9003 389 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL---FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLF 465 (1276)
Q Consensus 389 ~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~---~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~ 465 (1276)
.|+.|+|++|+... .+.-..+.+|. ||||.|+. .++.|+|++|++.+--..-..+
T Consensus 85 ~~~~~iv~~Ll~~G-adin~~d~~g~----tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d----------------- 142 (494)
T PHA02989 85 NKIKKIVKLLLKFG-ADINLKTFNGV----SPIVCFIYNSNINNCDMLRFLLSKGINVNDVKN----------------- 142 (494)
T ss_pred hhHHHHHHHHHHCC-CCCCCCCCCCC----cHHHHHHHhcccCcHHHHHHHHHCCCCcccccC-----------------
Confidence 35667777777543 33333455566 88886653 2566777777765411100111
Q ss_pred CChhhHHHhhhhhcccc--cCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccc----cCCCHHHHHHHHhhhhhcC
Q psy9003 466 GTPEQLKYLVDECHKAG--LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG----LFGTPEQLKYLVDECHKAG 539 (1276)
Q Consensus 466 ~~~~~~~~~v~~~~~a~--~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~----~~g~~e~~~~lv~~~~~~~ 539 (1276)
... .|..|.|. .+++.|.+++|++.+++++...+ .+..|+.+.|+ ..|++|++++|++.++++|
T Consensus 143 -~~g-----~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~----~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn 212 (494)
T PHA02989 143 -SRG-----YNLLHMYLESFSVKKDVIKILLSFGVNLFEKTS----LYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIE 212 (494)
T ss_pred -CCC-----CCHHHHHHHhccCCHHHHHHHHHcCCCcccccc----ccCCChHHHHHhcccccccHHHHHHHHhCCCCcc
Confidence 111 34455543 23567777777777776664211 12234444333 3468899999998888877
Q ss_pred CCCCc-chhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCC
Q psy9003 540 LFGTP-EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG 618 (1276)
Q Consensus 540 ~~~t~-~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~ 618 (1276)
..+.. .++....-...+++..+.++.+++|.. ++++|..... .-|..+.|...|+.|.+++|++.++++|.+-
T Consensus 213 ~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~advn~~d~~-----G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d 286 (494)
T PHA02989 213 TNNNGSESVLESFLDNNKILSKKEFKVLNFILK-YIKINKKDKK-----GFNPLLISAKVDNYEAFNYLLKLGDDIYNVS 286 (494)
T ss_pred ccCCccccHHHHHHHhchhhcccchHHHHHHHh-CCCCCCCCCC-----CCCHHHHHHHhcCHHHHHHHHHcCCCccccC
Confidence 44432 122222223344555677888887654 4666632222 2455555667888899999999888887764
Q ss_pred ChhhhhhhHHHhhhccCCCCHHHHHHHHH
Q psy9003 619 TPEQLKYLVDECHKAGLFGTPEQLKYLVD 647 (1276)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (1276)
... .++.+.|...|..+.++.|++
T Consensus 287 ~~G-----~TpL~~A~~~~~~~iv~~LL~ 310 (494)
T PHA02989 287 KDG-----DTVLTYAIKHGNIDMLNRILQ 310 (494)
T ss_pred CCC-----CCHHHHHHHcCCHHHHHHHHh
Confidence 433 566666667788887777775
No 84
>PHA03095 ankyrin-like protein; Provisional
Probab=99.25 E-value=4.3e-11 Score=141.64 Aligned_cols=59 Identities=12% Similarity=0.016 Sum_probs=24.7
Q ss_pred hhhcccccCC-ChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccc--cCCCHHHHHHHHhhhhhcC
Q psy9003 476 DECHKAGLFG-TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG--LFGTPEQLKYLVDECHKAG 539 (1276)
Q Consensus 476 ~~~~~a~~~~-~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~--~~g~~e~~~~lv~~~~~~~ 539 (1276)
|..|.|..+| +.+.+++|++.+.++|.... ...|+.|.|+ ..++.+++++|++.+++++
T Consensus 85 TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~-----~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~ 146 (471)
T PHA03095 85 TPLHLYLYNATTLDVIKLLIKAGADVNAKDK-----VGRTPLHVYLSGFNINPKVIRLLLRKGADVN 146 (471)
T ss_pred CHHHHHHHcCCcHHHHHHHHHcCCCCCCCCC-----CCCCHHHHHhhCCcCCHHHHHHHHHcCCCCC
Confidence 3444444444 34444444444444443322 1223333333 3344444444444444444
No 85
>KOG4177|consensus
Probab=99.25 E-value=1.5e-11 Score=156.83 Aligned_cols=451 Identities=20% Similarity=0.152 Sum_probs=271.1
Q ss_pred hhhhhhhcccCCCCHHHHHhhhhh--------------hcccccCCChHHHHHHHhhhhccCCCCCccccchhhhhhccc
Q psy9003 245 YLVDECHKAGLFGTPEQLKYLVDE--------------CHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 310 (1276)
Q Consensus 245 ~l~~~~~~~~~~g~~~~~~~li~~--------------~h~~~~~~~ie~~~yli~e~~~~~~~~~~~~~t~~~~~~~~a 310 (1276)
...+-+|.++.+|-.++.++|.+- -|-+-..++.++++.|+++- -.+++.+..++|-+ |.|
T Consensus 53 ~~~~pl~~aa~~~~~~v~~~ll~~~a~v~~~~~~~~~plh~a~~~~~a~~v~~ll~~g-a~~~~~~~~~lTpL----h~a 127 (1143)
T KOG4177|consen 53 SGFTPLHIAAHYGNENVAELLLNRGAIVNATARNGITPLHVASKRGDAEMVKLLLCRG-AQIDARDRDGLTPL----HCA 127 (1143)
T ss_pred cccCHHHHHhhhhhhhhhhhhhccccccCcccccCccHHHHHHhhcchhHHHHHHhcc-CchhhcccCCCcch----hhh
Confidence 344455666666666666655532 34444458899999998854 33566666666666 667
Q ss_pred ccCCCHHHHHHHhhhhhccCCC--Ccccchhhhhc--cccccccCCChhhhHHhhhhhccccCCCChhhHHH--------
Q psy9003 311 GLFGTPEQLKYLVDECHKAGLF--GTPEQLKYLVD--ECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKY-------- 378 (1276)
Q Consensus 311 ~~~gsi~~l~~Lv~~~~~~~~~--~~~~~~~~~~~--~~~~a~~~g~ie~~~yLi~~~h~~~~~~~~e~~~~-------- 378 (1276)
+..|..+++.+|..++..++.. .....++.++- ....+..+...|.+ -+..-+||-.. +.++.
T Consensus 128 a~~g~~~~~~~ll~~~a~~~~k~~~g~t~l~~a~~~~~~~ll~~~~~~d~l-~~~~~~~~~~~----~~~~ll~~~~~~~ 202 (1143)
T KOG4177|consen 128 ARKGHVQVIELLLQHGAPINIKTKNGLSPLHMAAQVACARLLLEYKAPDYL-RLHVAAHCGHA----RVAKLLLDKKADP 202 (1143)
T ss_pred cccccHHHHHHHHHccCCCcccccCCCCchhhhcchhhhHHhhhcccchhh-hhhHHhhcchH----HHHhhhhcccCCc
Confidence 7789999999999988544422 22233333321 11111111122222 22444443331 00000
Q ss_pred ------HHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhH
Q psy9003 379 ------LVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQL 452 (1276)
Q Consensus 379 ------~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l 452 (1276)
.-|-.+.+.-.+.|+++.+|+--- -+.-+.+..++ |++|.|+..|+++++++|+-.+-|..+. ++-|
T Consensus 203 ~a~~~~~~tpl~~a~~~nri~~~eLll~~g-adv~a~d~~gl----~~lh~a~~~g~~~i~~~l~~~ga~~~~~-~vr~- 275 (1143)
T KOG4177|consen 203 NASALNGFTPLHIACKKNRIKVVELLLKHG-ADVSAKDESGL----TPLHVAAFMGHLDIVKLLLQHGASVNVS-TVRG- 275 (1143)
T ss_pred cccccCCCCchhhhccccccceeeeeeecc-CcCCcccccCc----cHHHHHHhccchhHHHHHHhcccccCcc-cccc-
Confidence 002222222244455554443111 13456666777 8888888888888888888777776654 3344
Q ss_pred HHHHHHHhHhccCCChhhHHHhh--------------hhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcc
Q psy9003 453 KYLVDECHKAGLFGTPEQLKYLV--------------DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHK 518 (1276)
Q Consensus 453 ~~l~~~~~~~~~~~~~~~~~~~v--------------~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~ 518 (1276)
.+.+|.+++.+..|..++++ |..|++.-.|..++++++......++--.+ ...|..|.
T Consensus 276 ---~tplh~AA~~~~~e~~~~ll~~ga~~~~~~~~~kt~l~~a~~~g~~~i~~~~l~~~~~~~aar~-----~g~t~lHl 347 (1143)
T KOG4177|consen 276 ---ETPLHMAARAGQVEVCKLLLQNGADVLAKARDDQTPLHIASRLGHEEIVHLLLQAGATPNAART-----AGYTPLHL 347 (1143)
T ss_pred ---cCcchhhhccchhhhHhhhhccCcccccccccccChhhhhcccchHHHHHHHhhccCCccccCc-----CCcccccH
Confidence 45556666666666666663 344444444444444444333333332211 12666777
Q ss_pred cccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccC
Q psy9003 519 AGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLF 598 (1276)
Q Consensus 519 a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (1276)
+..+|..+.+.+|-+.+++..-... +.-+-++-|...|..+.+.+|-..+...|...-.- +|-.++|.-.
T Consensus 348 aa~~~~~~~~~~l~~~~~~~~~a~~-----k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk~g-----vTplh~aa~~ 417 (1143)
T KOG4177|consen 348 AAKEGQVEVAGALLEHGAQRRQAEE-----KGFTPLHLAVKSGRVSVVELLLEAGADPNSAGKNG-----VTPLHVAAHY 417 (1143)
T ss_pred hhhhhhHHHHHHhhccccccCcccc-----cCCcchhhhcccCchhHHHhhhhccCCcccCCCCC-----cceeeehhhc
Confidence 7777777766666666555543222 44455555667777777777777777755333222 5666777777
Q ss_pred CCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHHHHHHHHHHhhcCCCChH--HHhhhhhhhhhcccCCC
Q psy9003 599 GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPE--QLKYLVDECHKAGLFGT 676 (1276)
Q Consensus 599 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 676 (1276)
++.-.++++++.+++.|. ++++--++.|.|...|-..|...+.+- ++-+. ..+--++.+|-|.-.|+
T Consensus 418 ~~~~~v~l~l~~gA~~~~-----~~~lG~T~lhvaa~~g~~~~~~~~l~~------~g~~~n~~s~~G~T~Lhlaaq~Gh 486 (1143)
T KOG4177|consen 418 GNPRVVKLLLKRGASPNA-----KAKLGYTPLHVAAKKGRYLQIARLLLQ------YGADPNAVSKQGFTPLHLAAQEGH 486 (1143)
T ss_pred cCcceEEEEeccCCChhh-----HhhcCCChhhhhhhcccHhhhhhhHhh------cCCCcchhccccCcchhhhhccCC
Confidence 777777777776666543 334446666666666643333333321 11111 34555668888999999
Q ss_pred hhHHHHHHH--------------HHHhhccCCChhHHHhhHH--------------HHhhcccCCCHHHHHHHHHH----
Q psy9003 677 PEQLKYLVD--------------ECHKAGLFGTPEQLKYLVD--------------ECHKAGLFGTPEQLKYLVDE---- 724 (1276)
Q Consensus 677 ~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~---- 724 (1276)
.|-++.|++ .+|-+.--.|+..++-+++ .+|.|+.+|++..||+|++.
T Consensus 487 ~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv 566 (1143)
T KOG4177|consen 487 TEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADV 566 (1143)
T ss_pred chHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccc
Confidence 999999888 6677777788888888884 59999999999999999987
Q ss_pred ----------HHhccCCCCchhhhhhh
Q psy9003 725 ----------CHKAGLFGTPEQLKYLV 741 (1276)
Q Consensus 725 ----------~~~~~~~~~~~~~~~~~ 741 (1276)
+|.|+..|+-+.+-.||
T Consensus 567 ~ak~~~G~TPLH~Aa~~G~~~i~~LLl 593 (1143)
T KOG4177|consen 567 NAKDKLGYTPLHQAAQQGHNDIAELLL 593 (1143)
T ss_pred cccCCCCCChhhHHHHcChHHHHHHHH
Confidence 99999999999999887
No 86
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.25 E-value=1.4e-11 Score=121.83 Aligned_cols=86 Identities=16% Similarity=0.121 Sum_probs=69.3
Q ss_pred cCeeecCceEEEEEccCCcEEEEEccCCCCc---c-ccccceecC---CCeEEEEcCCCCCCCcccCcccEEEEEEEE--
Q psy9003 774 QLKYLVDECHKAGLLCFMHVVCAAGDFNNWN---R-EEFAYKKLD---FGKWELVLPPNPDGSCKLTHLSQVKLVVRN-- 844 (1276)
Q Consensus 774 G~~y~~D~a~FalwAP~A~~VsLvGDFN~wd---~-~~~pM~r~~---~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~-- 844 (1276)
|+++..++++|+||||+|++|+|+. |++|+ + ..++|.+.+ +|+|++++++...| ..|+|+|.+
T Consensus 1 Ga~~~~~g~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~g-------~~Y~y~v~g~~ 72 (119)
T cd02852 1 GATIDAGGVNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSVNRTGDVWHVFVEGLKPG-------QLYGYRVDGPF 72 (119)
T ss_pred CCeEeCCCEEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcccccCCEEEEEECCCCCC-------CEEEEEECCCC
Confidence 6778889999999999999999986 66664 1 357887544 79999999987655 699999986
Q ss_pred --eCCeeee----ecCCcceEeecCCCCC
Q psy9003 845 --QHGHLLD----RLSPWATYVTEPPVVG 867 (1276)
Q Consensus 845 --~dG~~~~----~~DPYAkav~~~~~~s 867 (1276)
.+|.++. .+||||+++.++..++
T Consensus 73 ~p~~g~~~~~~~~~~DPYA~a~~~~~~~~ 101 (119)
T cd02852 73 EPEQGHRFDPSKVLLDPYAKAVSGDEYFG 101 (119)
T ss_pred CCCcccccCCCcEEECCCcCeEcCccccC
Confidence 4577766 9999999998776554
No 87
>PHA03095 ankyrin-like protein; Provisional
Probab=99.24 E-value=4.1e-11 Score=141.86 Aligned_cols=286 Identities=10% Similarity=-0.030 Sum_probs=184.3
Q ss_pred ccCCChHHHHHHHhhhhccCCCCCccccchhhhhhcccccCC---CHHHHHHHhhhhhccCCCCcccchhhhhccccccc
Q psy9003 273 GLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG---TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 349 (1276)
Q Consensus 273 ~~~~~ie~~~yli~e~~~~~~~~~~~~~t~~~~~~~~a~~~g---si~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~ 349 (1276)
....++|+||+|++. ..+.-..+..|.|.+ |.|+..| ..+++++|++..-.++.. +. ...|+.|.|+
T Consensus 22 ~~~~~~~~v~~Ll~~-ga~vn~~~~~g~t~L----h~a~~~~~~~~~~iv~~Ll~~Gadin~~--~~---~g~TpLh~A~ 91 (471)
T PHA03095 22 ASNVTVEEVRRLLAA-GADVNFRGEYGKTPL----HLYLHYSSEKVKDIVRLLLEAGADVNAP--ER---CGFTPLHLYL 91 (471)
T ss_pred CCCCCHHHHHHHHHc-CCCcccCCCCCCCHH----HHHHHhcCCChHHHHHHHHHCCCCCCCC--CC---CCCCHHHHHH
Confidence 345789999999974 355554555555555 4455555 999999999876554432 22 3457788889
Q ss_pred cCC-ChhhhHHhhhhhccccC-CCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhcccc
Q psy9003 350 LFG-TPEQLKYLVDECHKAGL-FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLF 427 (1276)
Q Consensus 350 ~~g-~ie~~~yLi~~~h~~~~-~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~ 427 (1276)
..| +.+++++|++..-.++. +.......+.... ..+++.+++++|+... .++-..+..+. ||||.|+..
T Consensus 92 ~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~----~~~~~~~iv~~Ll~~g-ad~~~~d~~g~----tpL~~a~~~ 162 (471)
T PHA03095 92 YNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLS----GFNINPKVIRLLLRKG-ADVNALDLYGM----TPLAVLLKS 162 (471)
T ss_pred HcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhh----CCcCCHHHHHHHHHcC-CCCCccCCCCC----CHHHHHHHc
Confidence 999 69999999987665553 2223333332221 1256899999999753 45556666777 999988754
Q ss_pred C--CHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCC
Q psy9003 428 G--TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT 505 (1276)
Q Consensus 428 ~--~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~ 505 (1276)
+ +.+++++|+..+...... +...-..|.-.++ ...+..+.+++|++.+.+.+....
T Consensus 163 ~~~~~~iv~~Ll~~g~~~~~~-d~~g~t~Lh~~~~---------------------~~~~~~~i~~~Ll~~g~~~~~~d~ 220 (471)
T PHA03095 163 RNANVELLRLLIDAGADVYAV-DDRFRSLLHHHLQ---------------------SFKPRARIVRELIRAGCDPAATDM 220 (471)
T ss_pred CCCCHHHHHHHHHcCCCCccc-CCCCCCHHHHHHH---------------------HCCCcHHHHHHHHHcCCCCcccCC
Confidence 4 678888888765433333 3222222211111 123455666666666666655443
Q ss_pred HHHHHHHhhhhcccccCCCH--HHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChh
Q psy9003 506 PEQLKYLVDECHKAGLFGTP--EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPE 583 (1276)
Q Consensus 506 ~~~~~~~~t~~~~a~~~g~~--e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~ 583 (1276)
...|+.|.|...|+. +++++|+..+.++|.-+. ..-|..|.|...|+.+.+++|++.++++|+....-
T Consensus 221 -----~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~-----~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g 290 (471)
T PHA03095 221 -----LGNTPLHSMATGSSCKRSLVLPLLIAGISINARNR-----YGQTPLHYAAVFNNPRACRRLIALGADINAVSSDG 290 (471)
T ss_pred -----CCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCC-----CCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC
Confidence 346777777777765 577778777777764443 34455666668888888888888888888433322
Q ss_pred hhhhhhhhhcccccCCCHHHHHHHHhhhhhc
Q psy9003 584 QLKYLVDECHKAGLFGTPEQLKYLVDECHKA 614 (1276)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~ 614 (1276)
.|..+-|...|+.+.+++|+..+..+
T Consensus 291 -----~tpl~~A~~~~~~~~v~~LL~~~~~~ 316 (471)
T PHA03095 291 -----NTPLSLMVRNNNGRAVRAALAKNPSA 316 (471)
T ss_pred -----CCHHHHHHHhCCHHHHHHHHHhCCCH
Confidence 45566666888888888888776554
No 88
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=99.23 E-value=4.7e-11 Score=153.89 Aligned_cols=96 Identities=20% Similarity=0.193 Sum_probs=74.5
Q ss_pred hccceEecCCcEEEEEEccCCceEEEEe-ecc-CCCc----ce------EEEEEccCcc------ccceEEEEEecCCC-
Q psy9003 64 KYGIHVQADNSVRCFEWAPSAQQLYLTG-NVS-LTPW----SI------MEEASLSSIK------LIQSIQYILTGVFG- 124 (1276)
Q Consensus 64 ~fGah~~~~gg~~f~~wAP~A~~v~l~g-dfn-~~~w----~m------~~~~~~~~~~------~g~~yky~i~~~~g- 124 (1276)
.+||+...+|+++|++|||+|++|.|++ |++ |... .| ||+++|++++ .|..|+|+|.+.+.
T Consensus 318 ~LGa~~~~~g~v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~~~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~~~ 397 (1111)
T TIGR02102 318 KLGAQLHEDGTVTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKGDRGVWEVQLTKENTGIDSLTGYYYHYEITRGGDK 397 (1111)
T ss_pred CCCCEEecCCCEEEEEECCCCCEEEEEEEeCCCCCCceeeEecccCCCCEEEEEECCcccCcccCCCceEEEEEECCCce
Confidence 5999998777799999999999999998 673 3221 15 9999999654 58999999987433
Q ss_pred ------------C-C---------Cccccccc--------------------------ccccccC--------------C
Q psy9003 125 ------------T-P---------EQLKYLVD--------------------------ECHKAGL--------------F 142 (1276)
Q Consensus 125 ------------r-p---------~~as~~~d--------------------------e~h~gs~--------------~ 142 (1276)
. . ...|+|+| |+|+++| -
T Consensus 398 ~~~~DPYA~al~~~n~~~~~~~~~~~ks~vvD~~~~~p~~~~~~~~~~~~~~~d~vIYElHVrdFt~d~~~~~~~~~~~G 477 (1111)
T TIGR02102 398 VLALDPYAKSLAAWNDATSDDQIKVAKAAFVDPSSLGPQELDFAKIENFKKREDAIIYEAHVRDFTSDPAIAGDLTAQFG 477 (1111)
T ss_pred EEEeChhheEEeccCcccccccCCCCceEEEcCcccCccccccccccccCCccceEEEEEechhhCcCCCCCcccccCCc
Confidence 1 1 13445544 9999975 3
Q ss_pred ChHHHHHHHHHHHHhcCc
Q psy9003 143 GTPEQLKYLVDECHKAGL 160 (1276)
Q Consensus 143 ~y~e~a~~li~y~~~~~y 160 (1276)
+|+.|++.| +|+|++|+
T Consensus 478 tf~gl~ekL-dYLkeLGV 494 (1111)
T TIGR02102 478 TFAAFVEKL-DYLQDLGV 494 (1111)
T ss_pred CHHHHHHhH-HHHHHcCC
Confidence 589999996 99999999
No 89
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.18 E-value=2.3e-10 Score=137.85 Aligned_cols=288 Identities=10% Similarity=-0.069 Sum_probs=174.4
Q ss_pred CChHHHHHHHhhhhccCCCCCccccchhhhhhcccccCCCHHHHHHHhhhhhccCCCC-cccchhhhhccccccccCCCh
Q psy9003 276 GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG-TPEQLKYLVDECHKAGLFGTP 354 (1276)
Q Consensus 276 ~~ie~~~yli~e~~~~~~~~~~~~~t~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~-~~~~~~~~~~~~~~a~~~g~i 354 (1276)
..+|+||+|++.. .|+-.. ..|.|.++..+. ...++++++++|++..-.++..+ ...-+..++.+.. ....|+.
T Consensus 14 ~~~~~v~~LL~~G-advN~~-~~g~t~l~~~~~--~~~~~~~iv~~Ll~~GAdvn~~~~~~tpL~~a~~~~~-~~~~~~~ 88 (494)
T PHA02989 14 VDKNALEFLLRTG-FDVNEE-YRGNSILLLYLK--RKDVKIKIVKLLIDNGADVNYKGYIETPLCAVLRNRE-ITSNKIK 88 (494)
T ss_pred CcHHHHHHHHHcC-CCcccc-cCCCCHHHHHHh--cCCCChHHHHHHHHcCCCccCCCCCCCcHHHHHhccC-cchhhHH
Confidence 5689999999742 343222 345555533221 12358999999998765444221 1222333322211 1124678
Q ss_pred hhhHHhhhhhccccC-CCChhhHHHHHhhhcccccCCChhHHHHHhhhccccc-CCCChhhhhcccccchhccc--cCCH
Q psy9003 355 EQLKYLVDECHKAGL-FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG-LFGTPEQLKYLVDECHKAGL--FGTP 430 (1276)
Q Consensus 355 e~~~yLi~~~h~~~~-~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~-~~~~~~~~~~~vt~lh~a~~--~~~~ 430 (1276)
|+|++|++-.-.++. +.....-.+.... +...|+.|+|++|+... .++ -..+..|. ||||.|+. .++.
T Consensus 89 ~iv~~Ll~~Gadin~~d~~g~tpL~~a~~---~~~~~~~eiv~~Ll~~G-adin~~~d~~g~----tpLh~a~~~~~~~~ 160 (494)
T PHA02989 89 KIVKLLLKFGADINLKTFNGVSPIVCFIY---NSNINNCDMLRFLLSKG-INVNDVKNSRGY----NLLHMYLESFSVKK 160 (494)
T ss_pred HHHHHHHHCCCCCCCCCCCCCcHHHHHHH---hcccCcHHHHHHHHHCC-CCcccccCCCCC----CHHHHHHHhccCCH
Confidence 999999987766553 2222222221110 11137899999999753 454 45566777 99999863 4688
Q ss_pred hHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccc----cCCChhhhhhhhhhhhhhccCCC-
Q psy9003 431 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG----LFGTPEQLKYLVDECHKAGLFGT- 505 (1276)
Q Consensus 431 ~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~----~~~~~e~~~~lv~~~~~~~~~~~- 505 (1276)
++|++|+..+.......+..+ .|+.|.+. ..+++|.+++|++.+.++|....
T Consensus 161 ~iv~~Ll~~Gadi~~~~~~~g-----------------------~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~ 217 (494)
T PHA02989 161 DVIKILLSFGVNLFEKTSLYG-----------------------LTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNG 217 (494)
T ss_pred HHHHHHHHcCCCccccccccC-----------------------CChHHHHHhcccccccHHHHHHHHhCCCCccccCCc
Confidence 999999976632211122222 23333332 34578888888888888876552
Q ss_pred -HHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhh
Q psy9003 506 -PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQ 584 (1276)
Q Consensus 506 -~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~ 584 (1276)
...+.+.+ ...++...+.++++++|.. .+++|..+. +.-|..+.|...|+.|.+++|++.++++|......
T Consensus 218 ~~t~l~~~~-~~~~~~~~~~~~il~~l~~-~advn~~d~-----~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G- 289 (494)
T PHA02989 218 SESVLESFL-DNNKILSKKEFKVLNFILK-YIKINKKDK-----KGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDG- 289 (494)
T ss_pred cccHHHHHH-HhchhhcccchHHHHHHHh-CCCCCCCCC-----CCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCC-
Confidence 22233222 2234556678899998765 456665444 45666677778899999999999999998443322
Q ss_pred hhhhhhhhcccccCCCHHHHHHHHhhh
Q psy9003 585 LKYLVDECHKAGLFGTPEQLKYLVDEC 611 (1276)
Q Consensus 585 ~~~~~~~~~~~~~~~~~e~~~~l~~~~ 611 (1276)
.|..+.|...|+.+.+++|++..
T Consensus 290 ----~TpL~~A~~~~~~~iv~~LL~~~ 312 (494)
T PHA02989 290 ----DTVLTYAIKHGNIDMLNRILQLK 312 (494)
T ss_pred ----CCHHHHHHHcCCHHHHHHHHhcC
Confidence 45556666889999999988753
No 90
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=99.16 E-value=1.7e-10 Score=110.80 Aligned_cols=79 Identities=25% Similarity=0.381 Sum_probs=66.3
Q ss_pred CceEEEEEccCCcEEEEEccCCCCccccccceecC-CCeEEEEcCCCCCCCcccCcccEEEEEEEEeCCeeeeecCCcce
Q psy9003 780 DECHKAGLLCFMHVVCAAGDFNNWNREEFAYKKLD-FGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWAT 858 (1276)
Q Consensus 780 D~a~FalwAP~A~~VsLvGDFN~wd~~~~pM~r~~-~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~~dG~~~~~~DPYAk 858 (1276)
++++|++|+|.|++|+|+++|++|....++|.+.+ .|+|++.+++... |..|+|++...+|.+....|||++
T Consensus 21 ~~~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~~~~G~w~~~v~~~~~-------~~~Y~~~v~~~~g~~~~~~DPYa~ 93 (106)
T cd02855 21 SGVRFAVWAPNARRVSVVGDFNGWDGRRHPMRRRGDSGVWELFIPGLGE-------GELYKYEILGADGHLPLKADPYAF 93 (106)
T ss_pred CCEEEEEECCCCCEEEEEEECCCCCCcceecEECCCCCEEEEEECCCCC-------CCEEEEEEECCCCCEEEeeCCCce
Confidence 56799999999999999998999976678998866 9999999986544 458999998655677789999999
Q ss_pred EeecCCC
Q psy9003 859 YVTEPPV 865 (1276)
Q Consensus 859 av~~~~~ 865 (1276)
.+...++
T Consensus 94 ~~~~~~~ 100 (106)
T cd02855 94 YSELRPG 100 (106)
T ss_pred eeEeCCC
Confidence 9887654
No 91
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=99.15 E-value=8.4e-11 Score=154.29 Aligned_cols=59 Identities=7% Similarity=-0.041 Sum_probs=48.8
Q ss_pred hhccceEecCCcEEEEEEccCCceEEEEeecc-CCCcc-----e------EEEEEccCccccceEEEEEecCC
Q psy9003 63 NKYGIHVQADNSVRCFEWAPSAQQLYLTGNVS-LTPWS-----I------MEEASLSSIKLIQSIQYILTGVF 123 (1276)
Q Consensus 63 ~~fGah~~~~gg~~f~~wAP~A~~v~l~gdfn-~~~w~-----m------~~~~~~~~~~~g~~yky~i~~~~ 123 (1276)
..|||+... +||+|++|||+|++|.|+ .|+ |+.-. | ||++||+++++|+.|+|+|.++.
T Consensus 14 ~plGA~~~~-~gv~F~v~ap~A~~V~L~-lf~~~~~~~~~~~~l~~~~g~vW~~~i~~~~~g~~Ygyrv~g~~ 84 (1221)
T PRK14510 14 EPLGAVPDG-GGVNLALFSGAAERVEFC-LFDLWGVREEARIKLPGRTGDVWHGFIVGVGPGARYGNRQEGPG 84 (1221)
T ss_pred CCCceEEEC-CeEEEEEECCCCCEEEEE-EEECCCCCeeEEEECCCCcCCEEEEEEccCCCCcEEEEEeccCC
Confidence 369999864 469999999999999998 894 43221 3 99999999999999999998744
No 92
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=99.14 E-value=1.4e-10 Score=111.28 Aligned_cols=75 Identities=23% Similarity=0.426 Sum_probs=64.0
Q ss_pred HhhHHHhhccceEecC---CcEEEEEEccCCceEEEEeeccCCCcc-----e-------EEEEEccCccccceEEEEEec
Q psy9003 57 KFTTSYNKYGIHVQAD---NSVRCFEWAPSAQQLYLTGNVSLTPWS-----I-------MEEASLSSIKLIQSIQYILTG 121 (1276)
Q Consensus 57 ~Fs~~y~~fGah~~~~---gg~~f~~wAP~A~~v~l~gdfn~~~w~-----m-------~~~~~~~~~~~g~~yky~i~~ 121 (1276)
+.++.|+.||+|+..+ +|++||+|||+|++|.|+|+| ++|+ | +|++++|+.+.|..|+|+|..
T Consensus 2 ~~~~p~~~lG~~~~~~~~~~~~~frv~aP~A~~V~l~~~~--~~~~~~~~~m~~~~~~G~w~~~v~~~~~~~~Y~~~v~~ 79 (106)
T cd02855 2 THERLYEKLGAHPTEVDGVSGVRFAVWAPNARRVSVVGDF--NGWDGRRHPMRRRGDSGVWELFIPGLGEGELYKYEILG 79 (106)
T ss_pred cchhHHHhcCCEEcccCCcCCEEEEEECCCCCEEEEEEEC--CCCCCcceecEECCCCCEEEEEECCCCCCCEEEEEEEC
Confidence 3567899999997765 789999999999999999999 5553 5 999999999999999999987
Q ss_pred CCC---------------CCCcccccc
Q psy9003 122 VFG---------------TPEQLKYLV 133 (1276)
Q Consensus 122 ~~g---------------rp~~as~~~ 133 (1276)
.+| .|++|||++
T Consensus 80 ~~g~~~~~~DPYa~~~~~~~~~~~~~~ 106 (106)
T cd02855 80 ADGHLPLKADPYAFYSELRPGTASIVA 106 (106)
T ss_pred CCCCEEEeeCCCceeeEeCCCCeEEeC
Confidence 654 788888864
No 93
>PHA02798 ankyrin-like protein; Provisional
Probab=99.12 E-value=2.1e-10 Score=137.97 Aligned_cols=290 Identities=9% Similarity=-0.028 Sum_probs=176.9
Q ss_pred ChHHHHHHHhhhhccCCCCCccccchhhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhccccccc-----cC
Q psy9003 277 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG-----LF 351 (1276)
Q Consensus 277 ~ie~~~yli~e~~~~~~~~~~~~~t~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~-----~~ 351 (1276)
.++.||.|++ +|+|-.. ..+.|.....++ ...+++|++++|+++.-.++ ..+.-. -|+.+.++ ..
T Consensus 17 ~~~~v~~ll~--~~~~~~~-~~~~~~~~~yl~--~~~~~~~iv~~Ll~~Gadvn--~~d~~g---~TpL~~~~~n~~~~~ 86 (489)
T PHA02798 17 KLSTVKLLIK--SCNPNEI-VNEYSIFQKYLQ--RDSPSTDIVKLFINLGANVN--GLDNEY---STPLCTILSNIKDYK 86 (489)
T ss_pred cHHHHHHHHh--cCChhhh-cccchHHHHHHh--CCCCCHHHHHHHHHCCCCCC--CCCCCC---CChHHHHHHhHHhHH
Confidence 4889999997 4665322 123343322222 23568999999998765444 222211 12223322 23
Q ss_pred CChhhhHHhhhhhccccC-CCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCC-
Q psy9003 352 GTPEQLKYLVDECHKAGL-FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT- 429 (1276)
Q Consensus 352 g~ie~~~yLi~~~h~~~~-~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~- 429 (1276)
+++|++++|++-.-.++. +..+.+-.+.+...+. .++.|++++|+.. ..++...+.++. ||||.|+..++
T Consensus 87 ~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~---~~~~~iv~~Ll~~-Gadvn~~d~~g~----tpL~~a~~~~~~ 158 (489)
T PHA02798 87 HMLDIVKILIENGADINKKNSDGETPLYCLLSNGY---INNLEILLFMIEN-GADTTLLDKDGF----TMLQVYLQSNHH 158 (489)
T ss_pred hHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCC---cChHHHHHHHHHc-CCCccccCCCCC----cHHHHHHHcCCc
Confidence 679999999986654442 3333333332222111 2589999999974 456777788888 99999998887
Q ss_pred --HhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCC---
Q psy9003 430 --PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG--- 504 (1276)
Q Consensus 430 --~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~--- 504 (1276)
.++|++|+..+--...+.+.++...|..... ++...++.+.+++|++.++.++...
T Consensus 159 ~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~-------------------~~~~~~~~~ivk~Li~~Ga~i~~~~~~~ 219 (489)
T PHA02798 159 IDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFK-------------------YNIDRIDADILKLFVDNGFIINKENKSH 219 (489)
T ss_pred chHHHHHHHHHhCCCcccccCcCCCcHHHHHHH-------------------hccccCCHHHHHHHHHCCCCcccCCccc
Confidence 8999999876532222222222111111111 1123456777777777777766532
Q ss_pred CHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhh
Q psy9003 505 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQ 584 (1276)
Q Consensus 505 ~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~ 584 (1276)
...+.+++.. ...+...++.+++++|.. ..++|.-+. +.-|-.+.|...|+.+.+++|++.++++|.....-
T Consensus 220 ~~~~~~~l~~-l~~~~~~~~~~i~~~l~~-~~dvN~~d~-----~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G- 291 (489)
T PHA02798 220 KKKFMEYLNS-LLYDNKRFKKNILDFIFS-YIDINQVDE-----LGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELG- 291 (489)
T ss_pred cchHHHHHHH-HHhhcccchHHHHHHHHh-cCCCCCcCc-----CCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCC-
Confidence 2233333322 223445678888888765 345554333 55666677778999999999999999999433322
Q ss_pred hhhhhhhhcccccCCCHHHHHHHHhhhhhcc
Q psy9003 585 LKYLVDECHKAGLFGTPEQLKYLVDECHKAG 615 (1276)
Q Consensus 585 ~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~ 615 (1276)
-|..+.|...|+.+.+++|++.+.+++
T Consensus 292 ----~TpL~~A~~~~~~~iv~~lL~~~~~~~ 318 (489)
T PHA02798 292 ----NTCLFTAFENESKFIFNSILNKKPNKN 318 (489)
T ss_pred ----CcHHHHHHHcCcHHHHHHHHccCCCHH
Confidence 466667778999999999998877775
No 94
>KOG2212|consensus
Probab=99.12 E-value=7.5e-10 Score=124.53 Aligned_cols=102 Identities=23% Similarity=0.376 Sum_probs=75.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCC-------C------cCCCCCCC--cccccCC----CCCCC
Q psy9003 1030 AGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG-------L------NEFDGTQA--CFFHDGP----RGTHP 1090 (1276)
Q Consensus 1030 D~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~-------~------~~f~g~~~--~Yy~~~~----~g~~~ 1090 (1276)
+.|-|..+||+.||..|.+-|+|++.|+|+||+......+ . .+|.|..- .-|..+. .....
T Consensus 88 ~tRSGNE~eF~dMV~RCN~VGVRiyVDvv~NHM~g~~~~G~~vGt~Gs~~~p~s~SfPGVPYs~~DFn~~kc~~~~~~i~ 167 (504)
T KOG2212|consen 88 CTRSGNEDEFRDMVTRCNNVGVRIYVDAVINHMCGNAVSGGTVGTCGSYFNPGSRSFPGVPYSGWDFNDGKCKTGSGDIE 167 (504)
T ss_pred eccCCCHHHHHHHHHHhhccceEEEehhhhhhhccccccCCccccccCccCCCCCCCCCCCcccccCCCcccCCCccccc
Confidence 3778999999999999999999999999999998532111 1 22333210 0122211 12244
Q ss_pred CCCC------------cCCCCCcHHHHHHHHHHHHHHHHhCCCcEEccCCcccc
Q psy9003 1091 LWDS------------RLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM 1132 (1276)
Q Consensus 1091 ~W~g------------~~LN~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L 1132 (1276)
+|+. .+||-.+.-||..|++-|.+.++ .||-|||.|++++|
T Consensus 168 ~~Nda~~V~~C~LVGL~DL~Q~s~~Vr~Kive~L~hLid-lGVAGFRvDAsKHM 220 (504)
T KOG2212|consen 168 NYNDATQVRDCRLVGLLDLAQGSDYVRSKIAEYLNHLID-IGVAGFRVDASKHM 220 (504)
T ss_pred cccchhhhhcceEeecchhhhcchHHHHHHHHHHHHHHH-hccceeeechhhcc
Confidence 5542 56888899999999999999998 79999999999999
No 95
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=99.09 E-value=1.9e-10 Score=106.61 Aligned_cols=58 Identities=24% Similarity=0.391 Sum_probs=51.0
Q ss_pred ccceEecC-CcEEEEEEccCCceEEEEeeccCCC-cc-----e-------EEEEEcc-Ccccc-ceEEEEEecCCC
Q psy9003 65 YGIHVQAD-NSVRCFEWAPSAQQLYLTGNVSLTP-WS-----I-------MEEASLS-SIKLI-QSIQYILTGVFG 124 (1276)
Q Consensus 65 fGah~~~~-gg~~f~~wAP~A~~v~l~gdfn~~~-w~-----m-------~~~~~~~-~~~~g-~~yky~i~~~~g 124 (1276)
||||+.++ |+++|++|||+|++|.|+|+| ++ |. | +|+++++ .+++| ..|+|+|.+.+|
T Consensus 2 lG~~~~~~~~~~~F~vwaP~A~~V~l~~~~--~~~~~~~~~~m~~~~~~G~w~~~~~~~~~~g~~~Y~y~i~~~~g 75 (85)
T PF02922_consen 2 LGAHYTEDGGGVTFRVWAPNAKSVELVLYF--NGSWPAEEYPMTRKDDDGVWEVTVPGDLPPGGYYYKYRIDGDDG 75 (85)
T ss_dssp SEEEEESSCTEEEEEEE-TTESEEEEEEET--TTSSEEEEEEEEEECTTTEEEEEEEGCGTTTT-EEEEEEEETTT
T ss_pred cCcEEECCCCEEEEEEECCCCCEEEEEEEe--eecCCCceEEeeecCCCCEEEEEEcCCcCCCCEEEEEEEEeCCC
Confidence 89999996 899999999999999999999 66 76 5 9999999 78887 699999998876
No 96
>KOG4412|consensus
Probab=99.01 E-value=3.5e-10 Score=118.45 Aligned_cols=162 Identities=19% Similarity=0.112 Sum_probs=139.7
Q ss_pred hccccccccCCChhhhHHhhhhhccccCCCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccc
Q psy9003 342 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 421 (1276)
Q Consensus 342 ~~~~~~a~~~g~ie~~~yLi~~~h~~~~~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~l 421 (1276)
-++.|+||-.||-||+++|.-... ++.+. -+++|+ |||
T Consensus 39 Rt~LHwa~S~g~~eiv~fLlsq~n-v~~dd-------------------------------------kDdaGW----tPl 76 (226)
T KOG4412|consen 39 RTPLHWACSFGHVEIVYFLLSQPN-VKPDD-------------------------------------KDDAGW----TPL 76 (226)
T ss_pred CceeeeeeecCchhHHHHHHhcCC-CCCCC-------------------------------------ccccCC----chh
Confidence 377888888888888888865111 11221 256788 999
Q ss_pred hhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhc
Q psy9003 422 HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 501 (1276)
Q Consensus 422 h~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~ 501 (1276)
|.|+..|..+|||-|++-+.-++.++|+.. +|..|.|..-|-.|...+|++.++.|+
T Consensus 77 hia~s~g~~evVk~Ll~r~~advna~tn~G-----------------------~T~LHyAagK~r~eIaqlLle~ga~i~ 133 (226)
T KOG4412|consen 77 HIAASNGNDEVVKELLNRSGADVNATTNGG-----------------------QTCLHYAAGKGRLEIAQLLLEKGALIR 133 (226)
T ss_pred hhhhhcCcHHHHHHHhcCCCCCcceecCCC-----------------------cceehhhhcCChhhHHHHHHhcCCCCc
Confidence 999999999999999999988888877666 899999999999999999999999999
Q ss_pred cCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccC
Q psy9003 502 LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 578 (1276)
Q Consensus 502 ~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~ 578 (1276)
.|+. +-.|++|.|..-|++++++||++.++++|..++ |.-|-.+-|+..|-.+...+||..++++-+
T Consensus 134 ~kD~-----~~qtplHRAAavGklkvie~Li~~~a~~n~qDk-----~G~TpL~~al~e~~~d~a~lLV~~gAd~~~ 200 (226)
T KOG4412|consen 134 IKDK-----QGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDK-----YGFTPLHHALAEGHPDVAVLLVRAGADTDR 200 (226)
T ss_pred cccc-----ccCchhHHHHhccchhhHHHHHhcCCCCCcccc-----cCccHHHHHHhccCchHHHHHHHhccceee
Confidence 9886 668999999999999999999999999998888 888888889999999999999999999983
No 97
>PHA02798 ankyrin-like protein; Provisional
Probab=99.01 E-value=9.1e-10 Score=132.53 Aligned_cols=288 Identities=8% Similarity=-0.051 Sum_probs=167.9
Q ss_pred CCCHHHHHHHhhhhhccCCCCcccchhhhhccccccccCCChhhhHHhhhhhccccC-CCChhhHHHHH-hhhcccccCC
Q psy9003 313 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL-FGTPEQLKYLV-DECHKAGLFG 390 (1276)
Q Consensus 313 ~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~ie~~~yLi~~~h~~~~-~~~~e~~~~~~-~~~~~a~~~~ 390 (1276)
.-.++.|++|++.+ ++.... .... ......+...+++|+|++|++..-.++. .....+-.+.+ .+ .+...+
T Consensus 15 ~~~~~~v~~ll~~~--~~~~~~-~~~~--~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n--~~~~~~ 87 (489)
T PHA02798 15 NVKLSTVKLLIKSC--NPNEIV-NEYS--IFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSN--IKDYKH 87 (489)
T ss_pred cccHHHHHHHHhcC--Chhhhc-ccch--HHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHh--HHhHHh
Confidence 45678888888653 221111 0000 1111223446688889999876554442 22222222211 11 011136
Q ss_pred ChhHHHHHhhhcccccCCCChhhhhcccccchhccccC---CHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCC
Q psy9003 391 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG---TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT 467 (1276)
Q Consensus 391 ~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~---~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~ 467 (1276)
++|++++|+.. .++.-..+.+|. ||||.|+..+ +.+++++|+..+-. ++..+.
T Consensus 88 ~~~iv~~Ll~~-GadiN~~d~~G~----TpLh~a~~~~~~~~~~iv~~Ll~~Gad-------------------vn~~d~ 143 (489)
T PHA02798 88 MLDIVKILIEN-GADINKKNSDGE----TPLYCLLSNGYINNLEILLFMIENGAD-------------------TTLLDK 143 (489)
T ss_pred HHHHHHHHHHC-CCCCCCCCCCcC----cHHHHHHHcCCcChHHHHHHHHHcCCC-------------------ccccCC
Confidence 78899999863 455555666777 8999888654 56777777754322 221122
Q ss_pred hhhHHHhhhhhcccccCCC---hhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCc
Q psy9003 468 PEQLKYLVDECHKAGLFGT---PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP 544 (1276)
Q Consensus 468 ~~~~~~~v~~~~~a~~~~~---~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~ 544 (1276)
.. .|..|.|...+. .|.+++|++.+.++|.+.+.+..-.+.....++...++++++++|++.++.++..+..
T Consensus 144 ~g-----~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~ 218 (489)
T PHA02798 144 DG-----FTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKS 218 (489)
T ss_pred CC-----CcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCcc
Confidence 22 466677776665 8888888888888876542111001111222334567899999999988887743322
Q ss_pred c--hhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChhh
Q psy9003 545 E--QLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQ 622 (1276)
Q Consensus 545 ~--~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~ 622 (1276)
. .+..-..+...+...++.+.+.+|.. ++++| ..+. ..-|..+.|..+|+.+.+++|++.++++|..-...
T Consensus 219 ~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-~~dvN--~~d~---~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G- 291 (489)
T PHA02798 219 HKKKFMEYLNSLLYDNKRFKKNILDFIFS-YIDIN--QVDE---LGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELG- 291 (489)
T ss_pred ccchHHHHHHHHHhhcccchHHHHHHHHh-cCCCC--CcCc---CCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCC-
Confidence 1 22211222233445577777777654 45555 2222 23455566668899999999999999988765544
Q ss_pred hhhhHHHhhhccCCCCHHHHHHHHH
Q psy9003 623 LKYLVDECHKAGLFGTPEQLKYLVD 647 (1276)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (1276)
-++.+.|...++.+.++.|++
T Consensus 292 ----~TpL~~A~~~~~~~iv~~lL~ 312 (489)
T PHA02798 292 ----NTCLFTAFENESKFIFNSILN 312 (489)
T ss_pred ----CcHHHHHHHcCcHHHHHHHHc
Confidence 567777777888888888874
No 98
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=99.00 E-value=2.5e-09 Score=129.79 Aligned_cols=80 Identities=21% Similarity=0.271 Sum_probs=66.3
Q ss_pred cHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCcccccccccccc
Q psy9003 914 SYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDKEM 993 (1276)
Q Consensus 914 tf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~~~ 993 (1276)
||..... .||||++|||.| +++.|+| . ...|| .+|||++|+.
T Consensus 17 tF~~A~~-~l~yl~~LGISh----LY~SPIf--------------------t---A~pGS----tHGYDVvD~t------ 58 (889)
T COG3280 17 TFADARA-LLDYLADLGISH----LYLSPIF--------------------T---ARPGS----THGYDVVDPT------ 58 (889)
T ss_pred CHHHHHH-hhHHHHhcCchh----eeccchh--------------------h---cCCCC----CCCccCCCcc------
Confidence 6777776 599999999999 9999444 2 11233 5788876665
Q ss_pred ccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCc
Q psy9003 994 YTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN 1065 (1276)
Q Consensus 994 y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~ 1065 (1276)
+|+|.+|+.+.|.+||.++|.+||++|+|+|+||++..
T Consensus 59 ----------------------------------~InPeLGG~egl~rLvaalk~~GlGlI~DIVPNHMav~ 96 (889)
T COG3280 59 ----------------------------------EINPELGGEEGLERLVAALKSRGLGLIVDIVPNHMAVG 96 (889)
T ss_pred ----------------------------------ccChhhcChHHHHHHHHHHHhcCCceEEEecccchhcc
Confidence 45699999999999999999999999999999999877
No 99
>PLN02877 alpha-amylase/limit dextrinase
Probab=98.99 E-value=1.7e-09 Score=137.53 Aligned_cols=55 Identities=20% Similarity=0.175 Sum_probs=46.4
Q ss_pred hccceEecCCcEEEEEEccCCceEEEEeecc-CCCcc------e-----EEEEEccCccccceEEEEEe
Q psy9003 64 KYGIHVQADNSVRCFEWAPSAQQLYLTGNVS-LTPWS------I-----MEEASLSSIKLIQSIQYILT 120 (1276)
Q Consensus 64 ~fGah~~~~gg~~f~~wAP~A~~v~l~gdfn-~~~w~------m-----~~~~~~~~~~~g~~yky~i~ 120 (1276)
.|||+...+ |++|++|||.|++|.|+. |+ ++.+. | ||++++++...|+.|+|+|.
T Consensus 214 ~LGA~~~~~-g~~F~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m~~~~GVWsv~v~~~~~G~~Y~Y~V~ 280 (970)
T PLN02877 214 PLGAHFSKD-AVSLYLWAPTAQAVSLCL-YDDPRGKEPLEIVQLKESNGVWSVEGPKSWEGCYYVYEVS 280 (970)
T ss_pred CCcceEecC-CEEEEEECCCCCEEEEEE-ecCCCCccceEEecccCCCCEEEEEeccCCCCCeeEEEEe
Confidence 599997655 699999999999999996 53 33333 5 99999999999999999986
No 100
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.99 E-value=1.1e-09 Score=102.49 Aligned_cols=72 Identities=15% Similarity=0.077 Sum_probs=58.6
Q ss_pred cCeeec-CceEEEEEccCCcEEEEEccCCCCccccccceecCCCeEEEEcCCCCCCCcccCcccEEEEEEEEeCCeeeee
Q psy9003 774 QLKYLV-DECHKAGLLCFMHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDR 852 (1276)
Q Consensus 774 G~~y~~-D~a~FalwAP~A~~VsLvGDFN~wd~~~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~~dG~~~~~ 852 (1276)
|+++.. ++++|+||||+|++|+|+.. . + ..++|.+.+.|+|++++++. +| ..|+|++. ++ ..+
T Consensus 1 Ga~~~~~~~~~F~vwAP~A~~V~l~l~-~-~--~~~~m~~~~~G~W~~~v~~~-~g-------~~Y~y~v~--~~--~~~ 64 (85)
T cd02853 1 GARPLGAGGTRFRLWAPDAKRVTLRLD-D-G--EEIPMQRDGDGWFEAEVPGA-AG-------TRYRYRLD--DG--TPV 64 (85)
T ss_pred CCeEcCCCCEEEEEeCCCCCEEEEEec-C-C--CcccCccCCCcEEEEEeCCC-CC-------CeEEEEEC--CC--cCC
Confidence 556776 68999999999999999852 2 3 46899988999999999977 65 59999996 34 368
Q ss_pred cCCcceEee
Q psy9003 853 LSPWATYVT 861 (1276)
Q Consensus 853 ~DPYAkav~ 861 (1276)
.||||++..
T Consensus 65 ~DP~a~~~~ 73 (85)
T cd02853 65 PDPASRFQP 73 (85)
T ss_pred CCCccccCC
Confidence 999999853
No 101
>KOG0508|consensus
Probab=98.97 E-value=1.9e-09 Score=125.31 Aligned_cols=214 Identities=18% Similarity=0.164 Sum_probs=145.6
Q ss_pred CHHHHHHHHhhccccc-------CCCCcchhhhhhhccccccCCC-CccccchhhhhhhcccCCCCHHHHHhhhhhhccc
Q psy9003 201 TPEQLKYLVDECHKAG-------LFGTPEQLKYLVDECHKAGLFG-TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 272 (1276)
Q Consensus 201 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~l~~~~~~~~~~g~~~~~~~li~~~h~~ 272 (1276)
|-|.+.+|+++-.-.+ -++|-||++||.+.|--.|-.| |.+-+-+ .-+|++- +-||
T Consensus 28 s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge--------~Iegapp--------LWaA 91 (615)
T KOG0508|consen 28 SNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGE--------TIEGAPP--------LWAA 91 (615)
T ss_pred chHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCc--------ccCCCch--------hhHH
Confidence 3477889998877544 6889999999999886666533 3322221 1245543 4578
Q ss_pred ccCCChHHHHHHHhhhhccCCCCCccccchhhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhccccccccCC
Q psy9003 273 GLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG 352 (1276)
Q Consensus 273 ~~~~~ie~~~yli~e~~~~~~~~~~~~~t~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~~~g 352 (1276)
.-+||+||||.|+.-. .. .|....| +-|.+..|.--|++|++|||+++.-...+.+- +.-|-.+-||.-|
T Consensus 92 saAGHl~vVk~L~~~g--a~--VN~tT~T-NStPLraACfDG~leivKyLvE~gad~~Ianr-----hGhTcLmIa~ykG 161 (615)
T KOG0508|consen 92 SAAGHLEVVKLLLRRG--AS--VNDTTRT-NSTPLRAACFDGHLEIVKYLVEHGADPEIANR-----HGHTCLMIACYKG 161 (615)
T ss_pred hccCcHHHHHHHHHhc--Cc--ccccccc-CCccHHHHHhcchhHHHHHHHHcCCCCccccc-----CCCeeEEeeeccC
Confidence 8889999999999833 32 2222222 23566677889999999999976555556543 3445566889999
Q ss_pred ChhhhHHhhhhhccccC-CCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHh
Q psy9003 353 TPEQLKYLVDECHKAGL-FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPE 431 (1276)
Q Consensus 353 ~ie~~~yLi~~~h~~~~-~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~ 431 (1276)
|.||+.||..-....|. .--.++-.+...+ .||+||||.|+- |+.-|-.+.-|+ |||-.|++.|+.+
T Consensus 162 h~~I~qyLle~gADvn~ks~kGNTALH~caE------sG~vdivq~Ll~--~ga~i~~d~~Gm----tPL~~Aa~tG~~~ 229 (615)
T KOG0508|consen 162 HVDIAQYLLEQGADVNAKSYKGNTALHDCAE------SGSVDIVQLLLK--HGAKIDVDGHGM----TPLLLAAVTGHTD 229 (615)
T ss_pred chHHHHHHHHhCCCcchhcccCchHHHhhhh------cccHHHHHHHHh--CCceeeecCCCC----chHHHHhhhcchH
Confidence 99999999776554432 1112333444444 489999999986 455555555577 9999999999999
Q ss_pred HHHhhcccccccc-cCCChhhHHHH
Q psy9003 432 QLKYLVDECHKAG-LFGTPEQLKYL 455 (1276)
Q Consensus 432 ~~~yli~~~~~~~-~~~~~e~l~~l 455 (1276)
+|++|++ |.+ --..+|-|++|
T Consensus 230 iVe~L~~---~~~sr~~riealEll 251 (615)
T KOG0508|consen 230 IVERLLQ---CETSRESRIEALELL 251 (615)
T ss_pred HHHHHhc---CCcchhhHHHHHHHh
Confidence 9999998 111 12236666666
No 102
>KOG0508|consensus
Probab=98.93 E-value=2.8e-09 Score=123.89 Aligned_cols=179 Identities=19% Similarity=0.182 Sum_probs=126.3
Q ss_pred cccCCChHHHHHHHhhhhccCCCC---Cccccch-hhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhcccc-
Q psy9003 272 AGLFGTPEQLKYLVDECHKAGLFG---TPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH- 346 (1276)
Q Consensus 272 ~~~~~~ie~~~yli~e~~~~~~~~---~~~~~t~-~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~- 346 (1276)
++-.||.++|+||.+-|--+|-.+ +-.|+++ +.+.+--|...|++|+||.|++.. ++||+|. .||||
T Consensus 49 aaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~g--a~VN~tT------~TNStP 120 (615)
T KOG0508|consen 49 AARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRG--ASVNDTT------RTNSTP 120 (615)
T ss_pred ehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhc--Ccccccc------ccCCcc
Confidence 334699999999999775554322 1123333 345566677899999999999998 7888763 45554
Q ss_pred --ccccCCChhhhHHhhhhhcccc-C-CCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccch
Q psy9003 347 --KAGLFGTPEQLKYLVDECHKAG-L-FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 422 (1276)
Q Consensus 347 --~a~~~g~ie~~~yLi~~~h~~~-~-~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh 422 (1276)
-||-.||.||||||| |..-++ + |+++. |=..-|...||.||+.||..-. -|+.+.+-.|. |.||
T Consensus 121 LraACfDG~leivKyLv-E~gad~~IanrhGh------TcLmIa~ykGh~~I~qyLle~g-ADvn~ks~kGN----TALH 188 (615)
T KOG0508|consen 121 LRAACFDGHLEIVKYLV-EHGADPEIANRHGH------TCLMIACYKGHVDIAQYLLEQG-ADVNAKSYKGN----TALH 188 (615)
T ss_pred HHHHHhcchhHHHHHHH-HcCCCCcccccCCC------eeEEeeeccCchHHHHHHHHhC-CCcchhcccCc----hHHH
Confidence 899999999999999 444344 3 55553 2222234489999999998543 36677777788 9999
Q ss_pred hccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhh
Q psy9003 423 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 476 (1276)
Q Consensus 423 ~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~ 476 (1276)
.+|-.||.|+|+.|+..+-+.-+-+- ..+=|+ -+.+.+..+++++|++
T Consensus 189 ~caEsG~vdivq~Ll~~ga~i~~d~~--GmtPL~----~Aa~tG~~~iVe~L~~ 236 (615)
T KOG0508|consen 189 DCAESGSVDIVQLLLKHGAKIDVDGH--GMTPLL----LAAVTGHTDIVERLLQ 236 (615)
T ss_pred hhhhcccHHHHHHHHhCCceeeecCC--CCchHH----HHhhhcchHHHHHHhc
Confidence 99999999999999986665544332 433333 3346677788888876
No 103
>PHA02792 ankyrin-like protein; Provisional
Probab=98.93 E-value=1.1e-08 Score=125.75 Aligned_cols=240 Identities=10% Similarity=0.004 Sum_probs=128.2
Q ss_pred ChhhhHHhhhhhcccc---CCCChhhHHHHHhhhcccccCCChhHHHHHhhhcc--cccCCCChhhhhcccccchhcccc
Q psy9003 353 TPEQLKYLVDECHKAG---LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH--KAGLFGTPEQLKYLVDECHKAGLF 427 (1276)
Q Consensus 353 ~ie~~~yLi~~~h~~~---~~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h--~~~~~~~~~~~~~~vt~lh~a~~~ 427 (1276)
+.|++|+||.-.+.++ .++. -.+-+.++.++ =.+||+++|++.+- |.+ .+..+.-=-.+.-...
T Consensus 194 ~~~v~k~Li~~g~~~~~~d~~g~-t~l~~~~~~~~-----i~~ei~~~L~~~~~~~~~~-----~~~l~~y~~~~~~~~~ 262 (631)
T PHA02792 194 SLDVINYLISHEKEMRYYTYREH-TTLYYYVDKCD-----IKREIFDALFDSNYSGNEL-----MNILSNYLRKQYRNKN 262 (631)
T ss_pred CHHHHHHHHhCCCCcCccCCCCC-hHHHHHHHccc-----chHHHHHHHHhccccccch-----HhHHHHHHHHHhccCc
Confidence 5777777777665554 2222 22333343321 14777777777643 222 1110000000111111
Q ss_pred CCHh--HHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCC
Q psy9003 428 GTPE--QLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT 505 (1276)
Q Consensus 428 ~~~~--~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~ 505 (1276)
+.+| +|.-|++.++--..-..+.-+.+--++.--+-+.+ ++++.+...=..-. ..++|-+++|++.+..+.....
T Consensus 263 ~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~q~~l~~Yl~~~-~v~ieiIK~LId~Ga~~~r~~~ 339 (631)
T PHA02792 263 HKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYT--DSIQDLLSEYVSYH-TVYINVIKCMIDEGATLYRFKH 339 (631)
T ss_pred cCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHh--HHHHHHHHHHHhcC-CccHHHHHHHHHCCCccccCCc
Confidence 2344 77777777663222222222222111111111111 45555532111111 4789999999999988753211
Q ss_pred HHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccC---CCHHHHHHHHHhhhhccCCCCh
Q psy9003 506 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLF---GTPEQLKYLVDECHKAGLFGTP 582 (1276)
Q Consensus 506 ~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~---~~~e~~~~l~~~~~~~~~~~~~ 582 (1276)
......|...|++|++++|+..++++|..+... ...|..+.|... +..+-+++|+..++++|.....
T Consensus 340 -------~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g---~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~ 409 (631)
T PHA02792 340 -------INKYFQKFDNRDPKVVEYILKNGNVVVEDDDNI---INIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKH 409 (631)
T ss_pred -------chHHHHHHHcCCHHHHHHHHHcCCchhhhcCCC---CChhHHHHHHHhccHhHHHHHHHHHhcCCcccccccc
Confidence 122345677999999999999999998544321 011222222222 3344578889999998843322
Q ss_pred hhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChh
Q psy9003 583 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPE 621 (1276)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~ 621 (1276)
- .|..+.|...++.|.+++|+..++++|.+-...
T Consensus 410 G-----~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G 443 (631)
T PHA02792 410 G-----RSILYYCIESHSVSLVEWLIDNGADINITTKYG 443 (631)
T ss_pred C-----cchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC
Confidence 2 455666668999999999999999998775444
No 104
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.89 E-value=4.5e-09 Score=98.44 Aligned_cols=67 Identities=19% Similarity=0.149 Sum_probs=54.4
Q ss_pred cceEecCCcEEEEEEccCCceEEEEeeccCCCcce------EEEEEccCccccceEEEEEecCCC-----------CCCc
Q psy9003 66 GIHVQADNSVRCFEWAPSAQQLYLTGNVSLTPWSI------MEEASLSSIKLIQSIQYILTGVFG-----------TPEQ 128 (1276)
Q Consensus 66 Gah~~~~gg~~f~~wAP~A~~v~l~gdfn~~~w~m------~~~~~~~~~~~g~~yky~i~~~~g-----------rp~~ 128 (1276)
||.+..++|++|++|||+|++|.|...+ |..-.| +|+++++++ +|+.|+|+|.+..- .|+.
T Consensus 1 Ga~~~~~~~~~F~vwAP~A~~V~l~l~~-~~~~~m~~~~~G~W~~~v~~~-~g~~Y~y~v~~~~~~~DP~a~~~~~~~~~ 78 (85)
T cd02853 1 GARPLGAGGTRFRLWAPDAKRVTLRLDD-GEEIPMQRDGDGWFEAEVPGA-AGTRYRYRLDDGTPVPDPASRFQPEGVHG 78 (85)
T ss_pred CCeEcCCCCEEEEEeCCCCCEEEEEecC-CCcccCccCCCcEEEEEeCCC-CCCeEEEEECCCcCCCCCccccCCCCCCC
Confidence 7777777789999999999999999753 322236 999999999 99999999984211 6888
Q ss_pred cccccc
Q psy9003 129 LKYLVD 134 (1276)
Q Consensus 129 as~~~d 134 (1276)
||+|+|
T Consensus 79 ~s~v~~ 84 (85)
T cd02853 79 PSQVVD 84 (85)
T ss_pred CeEeeC
Confidence 999887
No 105
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=98.86 E-value=2.8e-09 Score=137.81 Aligned_cols=50 Identities=22% Similarity=0.316 Sum_probs=41.9
Q ss_pred ccc-cccccccCCCC----CCHHHHHHHHHHHHHc-CCEEEEEEeccccCCcccCC
Q psy9003 1020 LKY-LVDECHKAGLF----GTPEQLKYLVDECHKA-GLYVLLDVVHSHASKNVLDG 1069 (1276)
Q Consensus 1020 hkY-t~D~~~ID~~~----Gt~eEfK~LV~alHk~-GI~VILDvV~NHt~~~~~~~ 1069 (1276)
|+| +.||.+|||.+ |+.++|++||+++|++ ||++|+|+|+|||+.+++|.
T Consensus 162 S~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDvV~NHTa~ds~Wl 217 (1464)
T TIGR01531 162 SCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDIVFNHTANNSPWL 217 (1464)
T ss_pred CCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEeeecccccCCHHH
Confidence 344 55666677777 5899999999999997 99999999999999998653
No 106
>PHA02792 ankyrin-like protein; Provisional
Probab=98.85 E-value=6.7e-08 Score=118.87 Aligned_cols=338 Identities=11% Similarity=-0.010 Sum_probs=191.4
Q ss_pred HHHHHhhhhhhcccccCCChHHHHHHHhhhhccCCCCCccccchhhhhhccccc-CCCHHHHHHHhhhhhc--cCCCCcc
Q psy9003 259 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL-FGTPEQLKYLVDECHK--AGLFGTP 335 (1276)
Q Consensus 259 ~~~~~~li~~~h~~~~~~~ie~~~yli~e~~~~~~~~~~~~~t~~~~~~~~a~~-~gsi~~l~~Lv~~~~~--~~~~~~~ 335 (1276)
.+++.|+.+ ..+++|+||+||. |.+......++ ..+..+-|.. .+++|++++|++..-. .+.+.+.
T Consensus 72 ~~~~~~~~s------~n~~lElvk~LI~--~GAdvN~~~n~---~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~ 140 (631)
T PHA02792 72 FDIFEYLCS------DNIDIELLKLLIS--KGLEINSIKNG---INIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGY 140 (631)
T ss_pred ccHHHHHHH------hcccHHHHHHHHH--cCCCcccccCC---CCcceeEeecCCCChHHHHHHHHCCCCcccccccCc
Confidence 457777764 3467999999999 45543222222 1223344434 6999999999998542 2333332
Q ss_pred cchhhhhccccccccCCChhhhHHhhhhhcccc----C----CCChhhHH--HHHhhhcccccCCChhHHHHHhhhcccc
Q psy9003 336 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG----L----FGTPEQLK--YLVDECHKAGLFGTPEQLKYLVDECHKA 405 (1276)
Q Consensus 336 ~~~~~~~~~~~~a~~~g~ie~~~yLi~~~h~~~----~----~~~~e~~~--~~~~~~~~a~~~~~id~vkyLi~~~h~~ 405 (1276)
..+-.-+|++.. |=-++|+.+- + .....+.. |.+++|. .-..-+.|++|+||+.....
T Consensus 141 ~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~-~~~~~~~~v~k~Li~~g~~~ 208 (631)
T PHA02792 141 KIIIEQITRAEY-----------YNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQ-DGYATSLDVINYLISHEKEM 208 (631)
T ss_pred chhhhhcccccc-----------cchhhhccccccccccccCCCCCCchHHHHHhhCCc-ccccCCHHHHHHHHhCCCCc
Confidence 222222232221 2234454422 1 11122222 2222210 00001699999999876644
Q ss_pred cCCCChhhhhcccccchhccccC--CHhHHHhhcccccccccCCChhhHHHHHHHHhHhc----cCCChhhHHHhhhhhc
Q psy9003 406 GLFGTPEQLKYLVDECHKAGLFG--TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG----LFGTPEQLKYLVDECH 479 (1276)
Q Consensus 406 ~~~~~~~~~~~~vt~lh~a~~~~--~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~----~~~~~~~~~~~v~~~~ 479 (1276)
+-- +..+- |+||.|+.+. ..|+++.|++++- --- +---+|.+-...-- .+-..++|.-|.+.+|
T Consensus 209 ~~~-d~~g~----t~l~~~~~~~~i~~ei~~~L~~~~~--~~~---~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~ 278 (631)
T PHA02792 209 RYY-TYREH----TTLYYYVDKCDIKREIFDALFDSNY--SGN---ELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHD 278 (631)
T ss_pred Ccc-CCCCC----hHHHHHHHcccchHHHHHHHHhccc--ccc---chHhHHHHHHHHHhccCccCccHHHHHHHHhCCC
Confidence 432 33466 9999999888 7899999999733 111 11112222222211 2234457777777777
Q ss_pred ccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhcccc
Q psy9003 480 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 559 (1276)
Q Consensus 480 ~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~ 559 (1276)
.-.+-.++--+.+.-++.-.+- -....+..++..=..-+ -.++|++|+|++.++.+.-... .+.-..|..
T Consensus 279 ~~~i~~~~~~~~~~~~~~~~~~--~~~~~~q~~l~~Yl~~~-~v~ieiIK~LId~Ga~~~r~~~-------~n~~~~Aa~ 348 (631)
T PHA02792 279 TFYILELCNSLRNNIIISSILK--RYTDSIQDLLSEYVSYH-TVYINVIKCMIDEGATLYRFKH-------INKYFQKFD 348 (631)
T ss_pred ccchhhhhhhhhhhhHHHHHHH--HHhHHHHHHHHHHHhcC-CccHHHHHHHHHCCCccccCCc-------chHHHHHHH
Confidence 4443344444444322222221 11234444422222222 4799999999999998751111 122346678
Q ss_pred CCCHHHHHHHHHhhhhccCCC----ChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccC
Q psy9003 560 FGTPEQLKYLVDECHKAGLFG----TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 635 (1276)
Q Consensus 560 ~~~~e~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (1276)
.|++|.+++|+..|+++|... +..-|.+.+ .....+..+.+++|+..++++|.+-+.- .++++.|..
T Consensus 349 ~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~----~n~~~~v~~IlklLIs~GADIN~kD~~G-----~TPLh~Aa~ 419 (631)
T PHA02792 349 NRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTL----SIHESDVLSILKLCKPYIDDINKIDKHG-----RSILYYCIE 419 (631)
T ss_pred cCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHH----HhccHhHHHHHHHHHhcCCccccccccC-----cchHHHHHH
Confidence 999999999999999998332 223333321 2222334567899999999998654444 778888888
Q ss_pred CCCHHHHHHHHHH
Q psy9003 636 FGTPEQLKYLVDE 648 (1276)
Q Consensus 636 ~~~~~~~~~~~~~ 648 (1276)
.+..|.+++|++.
T Consensus 420 ~~n~eivelLLs~ 432 (631)
T PHA02792 420 SHSVSLVEWLIDN 432 (631)
T ss_pred cCCHHHHHHHHHC
Confidence 9999999999974
No 107
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.84 E-value=7.3e-09 Score=99.68 Aligned_cols=58 Identities=17% Similarity=0.083 Sum_probs=49.1
Q ss_pred ccceEecCCcEEEEEEccCCceEEEEeecc-CCC---cc---e------EEEEEccCccccceEEEEEecCCC
Q psy9003 65 YGIHVQADNSVRCFEWAPSAQQLYLTGNVS-LTP---WS---I------MEEASLSSIKLIQSIQYILTGVFG 124 (1276)
Q Consensus 65 fGah~~~~gg~~f~~wAP~A~~v~l~gdfn-~~~---w~---m------~~~~~~~~~~~g~~yky~i~~~~g 124 (1276)
+||++.. +|++|++|||+|++|.|.. |+ |++ +. | +|+++|++..+|+.|+|+|.+.++
T Consensus 1 lGa~~~~-~~~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~~~~gvw~~~v~~~~~g~~Y~y~i~~~~~ 71 (100)
T cd02860 1 LGAVYTP-EKTTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKRGENGVWSVTLDGDLEGYYYLYEVKVYKG 71 (100)
T ss_pred CCCEEeC-CCEEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeecCCCCEEEEEeCCccCCcEEEEEEEEece
Confidence 6999876 5699999999999999998 84 431 12 5 999999999999999999998744
No 108
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.79 E-value=2.1e-08 Score=94.29 Aligned_cols=70 Identities=13% Similarity=0.119 Sum_probs=54.1
Q ss_pred CceEEEEEccCCcEEEEEccCCCCccccccceecCCCeEEEEcCCCCCCCcccCcccEEEEEEEEeCCeeeeecCCcceE
Q psy9003 780 DECHKAGLLCFMHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATY 859 (1276)
Q Consensus 780 D~a~FalwAP~A~~VsLvGDFN~wd~~~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~~dG~~~~~~DPYAka 859 (1276)
.+++|++|||.|++|+|+++||+| ..++|++.+.|+|+++++....| .|+|++. .|| ...+||+++.
T Consensus 6 ~~v~F~vwAP~A~~V~L~~~~~~~--~~~~m~~~~~G~W~~~v~~l~~g--------~Y~Y~~~-vdg--~~~~DP~s~~ 72 (85)
T cd02858 6 RTVTFRLFAPKANEVQVRGSWGGA--GSHPMTKDEAGVWSVTTGPLAPG--------IYTYSFL-VDG--VRVIDPSNPT 72 (85)
T ss_pred CcEEEEEECCCCCEEEEEeecCCC--ccEeCeECCCeEEEEEECCCCCc--------EEEEEEE-ECC--eEecCCCCCc
Confidence 358999999999999999999865 46899998899999999654333 4555554 267 4579999976
Q ss_pred eec
Q psy9003 860 VTE 862 (1276)
Q Consensus 860 v~~ 862 (1276)
...
T Consensus 73 ~~~ 75 (85)
T cd02858 73 TKP 75 (85)
T ss_pred eee
Confidence 543
No 109
>KOG4412|consensus
Probab=98.76 E-value=7.8e-09 Score=108.57 Aligned_cols=168 Identities=17% Similarity=0.073 Sum_probs=135.7
Q ss_pred ChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhh
Q psy9003 410 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQ 489 (1276)
Q Consensus 410 ~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~ 489 (1276)
+-++. ||||.|+..|+.++|+.|++.-+- +++.-|| +=||+.|-|..+|..|.
T Consensus 35 dqD~R----t~LHwa~S~g~~eiv~fLlsq~nv--------------------~~ddkDd---aGWtPlhia~s~g~~ev 87 (226)
T KOG4412|consen 35 DQDGR----TPLHWACSFGHVEIVYFLLSQPNV--------------------KPDDKDD---AGWTPLHIAASNGNDEV 87 (226)
T ss_pred cccCC----ceeeeeeecCchhHHHHHHhcCCC--------------------CCCCccc---cCCchhhhhhhcCcHHH
Confidence 33788 999999999999999999872211 1222222 33899999999999999
Q ss_pred hhhhhhh-hhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHH
Q psy9003 490 LKYLVDE-CHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKY 568 (1276)
Q Consensus 490 ~~~lv~~-~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~ 568 (1276)
++-|.+. ..+.|..-+ -.+|+.|+|.--|-+|++.+|++.++.|++.+- |.+|-+|.|-.-|+++.++|
T Consensus 88 Vk~Ll~r~~advna~tn-----~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~-----~~qtplHRAAavGklkvie~ 157 (226)
T KOG4412|consen 88 VKELLNRSGADVNATTN-----GGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDK-----QGQTPLHRAAAVGKLKVIEY 157 (226)
T ss_pred HHHHhcCCCCCcceecC-----CCcceehhhhcCChhhHHHHHHhcCCCCccccc-----ccCchhHHHHhccchhhHHH
Confidence 9988887 555553332 348999999999999999999999999998887 99999999999999999999
Q ss_pred HHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCC
Q psy9003 569 LVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT 619 (1276)
Q Consensus 569 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~ 619 (1276)
|++.++++|.-++.- -|..+.|+--|..+...+||..++++-++-+
T Consensus 158 Li~~~a~~n~qDk~G-----~TpL~~al~e~~~d~a~lLV~~gAd~~~edk 203 (226)
T KOG4412|consen 158 LISQGAPLNTQDKYG-----FTPLHHALAEGHPDVAVLLVRAGADTDREDK 203 (226)
T ss_pred HHhcCCCCCcccccC-----ccHHHHHHhccCchHHHHHHHhccceeeccc
Confidence 999999998544433 5666666678899999999999999865443
No 110
>KOG0510|consensus
Probab=98.75 E-value=2e-08 Score=122.86 Aligned_cols=381 Identities=17% Similarity=0.080 Sum_probs=215.0
Q ss_pred ccccccccCCChhhhHHhhhhhccccCCCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccch
Q psy9003 343 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 422 (1276)
Q Consensus 343 ~~~~~a~~~g~ie~~~yLi~~~h~~~~~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh 422 (1276)
++.|.|.-....|.+.+|+.+....+..+- +-.+-.|-|...|..+.++.|+.-. -|+-..+..+. ||||
T Consensus 90 ~~l~~a~~~~~~~~i~~Lls~gad~~~~n~-----~~~aplh~A~~~~~~s~L~~Ll~~~-~dvnl~de~~~----TpLh 159 (929)
T KOG0510|consen 90 TPLHAAVEYNQGDKIQVLLSYGADTPLRNL-----NKNAPLHLAADSGNYSCLKLLLDYG-ADVNLEDENGF----TPLH 159 (929)
T ss_pred chhHHHhhcchHHHHHHHHhcCCCCChhhh-----hccCchhhccccchHHHHHHHHHhc-CCccccccCCC----chhh
Confidence 445556666778889999888876664221 1122233444457788899998877 44445555666 9999
Q ss_pred hccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhcc
Q psy9003 423 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 502 (1276)
Q Consensus 423 ~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~ 502 (1276)
.||+.++.|..|-||+.+-|.+.-.+.. ...-|++.++++.|-.|-.+. .+|--+| ..+|.
T Consensus 160 ~A~~~~~~E~~k~Li~~~a~~~K~~~~~-----~~~iH~aa~s~s~e~mEi~l~------~~g~~r~--------~~in~ 220 (929)
T KOG0510|consen 160 LAARKNKVEAKKELINKGADPCKSDIDG-----NFPIHEAARSGSKECMEIFLP------EHGYERQ--------THINF 220 (929)
T ss_pred HHHhcChHHHHHHHHhcCCCCCcccCcC-----CchHHHHHHhcchhhhhhhhc------cccchhh--------ccccc
Confidence 9999999998788888887777655422 223455555555554443332 1111111 11111
Q ss_pred CCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcC-------------CCCCcchhhhhhhhhhccccCCCHHHHHHH
Q psy9003 503 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG-------------LFGTPEQLKYLVDECHKAGLFGTPEQLKYL 569 (1276)
Q Consensus 503 ~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~-------------~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l 569 (1276)
-.+ -.-|+.|-|-..|.+|++|....-...|- |+..|+ =.||-+|.|+.+|.+|.+-.|
T Consensus 221 ~~n-----~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~---dg~tpLH~a~r~G~~~svd~L 292 (929)
T KOG0510|consen 221 DNN-----EKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDN---DGCTPLHYAARQGGPESVDNL 292 (929)
T ss_pred ccC-----CCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccc---cCCchHHHHHHcCChhHHHHH
Confidence 110 01245555555666666665554443332 111111 135666777788888888888
Q ss_pred HHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHHHHHHH--
Q psy9003 570 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD-- 647 (1276)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 647 (1276)
.+.++.||....|+ =+..|.|...|++.-+.-|++ |-|+...++-+-.--+..|-|..-|+--.++.|++
T Consensus 293 l~~Ga~I~~kn~d~-----~spLH~AA~yg~~ntv~rLL~---~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~G 364 (929)
T KOG0510|consen 293 LGFGASINSKNKDE-----ESPLHFAAIYGRINTVERLLQ---ESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKG 364 (929)
T ss_pred HHcCCcccccCCCC-----CCchHHHHHcccHHHHHHHHh---CcCccccccccccCCCchhhhhhcCHHHHHHHHHhcC
Confidence 88888888444444 466777778888877777777 55555555433333455566666677777777776
Q ss_pred HHHhhcCCCChHHHhhhhhhhhhcccCCChhHHHHHHHHHHhhccCCChh--HHHhhHHHHhhcccC-------------
Q psy9003 648 ECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPE--QLKYLVDECHKAGLF------------- 712 (1276)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~------------- 712 (1276)
|...+ .+ |.=++=-+++|+|+.||..-.+.+|+-.=+.+|+++-.. ++-|..+.+.++-.|
T Consensus 365 A~~~~--~~--e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~~g~SA~~~~~~~~~p~~~~~~~~n~c~~~~~i 440 (929)
T KOG0510|consen 365 ALFLN--MS--EADSDGNTALHLAAKYGNTSAVQKLISHGADIGVKNKKGKSAFDTRPDRCLPVFVHRSPFNKCPTTELI 440 (929)
T ss_pred hhhhc--cc--ccccCCchhhhHHHHhccHHHHHHHHHcCCceeeccccccccccccccccccHHHhhCCCCCcchhhhh
Confidence 22111 11 222233348999999999999999988766666633222 222222222221111
Q ss_pred -CCHHHHHHHHHHHHhcc-C---CCCchh--hhhhhhhhhccCcccChhhhhhhHhhccccCCCCCc
Q psy9003 713 -GTPEQLKYLVDECHKAG-L---FGTPEQ--LKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP 772 (1276)
Q Consensus 713 -~~~~~~~~~~~~~~~~~-~---~~~~~~--~~~~~~~~~~~~~~~~~e~l~~F~~~Y~~~G~~Gtp 772 (1276)
-=+|-++..+|.|..-- + --++.| ++=.+-.|+..|-.---+|.-..+.-|-++++.|.+
T Consensus 441 ~~~pe~~e~vlD~c~l~~~e~~~~~~~~Q~~~~~~~~~mv~~~~~eLL~HPL~ssfL~mKW~~~g~~ 507 (929)
T KOG0510|consen 441 EPLPECFEIVLDFCILKSQERKDSPTPLQDEAAPILNIMVDKEQIELLEHPLSSSFLFMKWNRYGKY 507 (929)
T ss_pred ccchHHHHHHHHHHHHHHhhccCCCChhhhhhhhHHHHHhhhhHHHHhcChhHHHHHHHHHHHhhHH
Confidence 12466677777643211 1 144444 333455566666666555544444445555555543
No 111
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.67 E-value=6.9e-08 Score=89.97 Aligned_cols=70 Identities=26% Similarity=0.315 Sum_probs=56.6
Q ss_pred ceEEEEEccCCcEEEEEccCCCCccccccceecCCCeEEEEcCCCCCCCcccCcccEEEEEEEEeCCeeeeecCCcceEe
Q psy9003 781 ECHKAGLLCFMHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATYV 860 (1276)
Q Consensus 781 ~a~FalwAP~A~~VsLvGDFN~wd~~~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~~dG~~~~~~DPYAkav 860 (1276)
.++|++|+|.|++|+|.|+||+|+ ..+|.+...|+|+++++ ...|. +.|+|.+ ||.+. ..||.+...
T Consensus 3 ~vtf~~~ap~a~~V~v~G~fn~W~--~~~m~~~~~G~w~~~~~-l~~G~------y~Ykf~v---dg~~~-~~DP~~~~~ 69 (82)
T cd02861 3 PVVFAYRGPEADSVYLAGSFNNWN--AIPMEREGDGLWVVTVE-LRPGR------YEYKFVV---DGEWV-IVDPNAAAY 69 (82)
T ss_pred cEEEEEECCCCCEEEEEeECCCCC--cccCEECCCCcEEEEEe-CCCCc------EEEEEEE---CCEEe-eCCCCCCce
Confidence 368999999999999999999996 67999877899999997 44443 5788887 67653 589999765
Q ss_pred ecC
Q psy9003 861 TEP 863 (1276)
Q Consensus 861 ~~~ 863 (1276)
..+
T Consensus 70 ~~~ 72 (82)
T cd02861 70 VDD 72 (82)
T ss_pred ecC
Confidence 443
No 112
>PHA02795 ankyrin-like protein; Provisional
Probab=98.63 E-value=3.7e-08 Score=117.14 Aligned_cols=130 Identities=8% Similarity=-0.065 Sum_probs=67.0
Q ss_pred hhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHH-hhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhh
Q psy9003 476 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYL-VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 554 (1276)
Q Consensus 476 ~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~-~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~ 554 (1276)
|..|.|..++..|-+++|...++.+...+..++...+ .|+.+-|...+.+|++++|+.-++++|..+. +.-|..
T Consensus 151 t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~-----~G~TpL 225 (437)
T PHA02795 151 NAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDA-----GGRTLL 225 (437)
T ss_pred CHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCC-----CCCCHH
Confidence 3444444445555555554444432222222221111 2444445556666777777766666665444 334444
Q ss_pred hccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCC--------HHHHHHHHhhhhhcc
Q psy9003 555 HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT--------PEQLKYLVDECHKAG 615 (1276)
Q Consensus 555 ~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~e~~~~l~~~~~~~~ 615 (1276)
+.|...|+.|.+++|++.++++|.....- +|..+.|...|+ .|.+++|+..++.++
T Consensus 226 h~Aa~~g~~eiVelLL~~GAdIN~~d~~G-----~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~ 289 (437)
T PHA02795 226 YRAIYAGYIDLVSWLLENGANVNAVMSNG-----YTCLDVAVDRGSVIARRETHLKILEILLREPLSID 289 (437)
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCCcCCCC-----CCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCC
Confidence 55556667777777777766666333222 444444445543 466777766666554
No 113
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.58 E-value=1.5e-07 Score=91.28 Aligned_cols=56 Identities=14% Similarity=0.098 Sum_probs=47.6
Q ss_pred ccceEecCCcEEEEEEccCCceEEEEeecc-CCCcc---e------EEEEEccCccccceEEEEEecC
Q psy9003 65 YGIHVQADNSVRCFEWAPSAQQLYLTGNVS-LTPWS---I------MEEASLSSIKLIQSIQYILTGV 122 (1276)
Q Consensus 65 fGah~~~~gg~~f~~wAP~A~~v~l~gdfn-~~~w~---m------~~~~~~~~~~~g~~yky~i~~~ 122 (1276)
+||... ++|++|++|||+|++|.|+. |+ +..+. | +|+++|+++.+|..|+|+|.++
T Consensus 2 lGa~~~-~~g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~~GvW~~~v~~~~~g~~Y~y~i~g~ 67 (103)
T cd02856 2 LGATLD-GEGCNFAVHSENATRIELCL-FDEDGSETRLPLTEEYGGVWHGFLPGIKAGQRYGFRVHGP 67 (103)
T ss_pred CccEEe-CCCeEEEEECCCCCEEEEEE-EeCCCCEEEEEcccccCCEEEEEECCCCCCCEEEEEECCc
Confidence 789877 55799999999999999999 63 43232 5 9999999999999999999884
No 114
>KOG0510|consensus
Probab=98.55 E-value=1.3e-07 Score=116.08 Aligned_cols=306 Identities=17% Similarity=0.091 Sum_probs=201.2
Q ss_pred cccchhhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhccccccccCCChhhhHHhhhhhccccCCCChhhHH
Q psy9003 298 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLK 377 (1276)
Q Consensus 298 ~~~t~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~ie~~~yLi~~~h~~~~~~~~e~~~ 377 (1276)
++.+.+ |-|+.....|.+++|..+....++.+- +-..+.|.|...|..+-|+.|++-. +++|--+|-
T Consensus 87 ~~n~~l----~~a~~~~~~~~i~~Lls~gad~~~~n~-----~~~aplh~A~~~~~~s~L~~Ll~~~--~dvnl~de~-- 153 (929)
T KOG0510|consen 87 ADNTPL----HAAVEYNQGDKIQVLLSYGADTPLRNL-----NKNAPLHLAADSGNYSCLKLLLDYG--ADVNLEDEN-- 153 (929)
T ss_pred ccCchh----HHHhhcchHHHHHHHHhcCCCCChhhh-----hccCchhhccccchHHHHHHHHHhc--CCccccccC--
Confidence 444444 445556678888888888776664432 3345566677777888888887766 444333320
Q ss_pred HHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHH
Q psy9003 378 YLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 457 (1276)
Q Consensus 378 ~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~ 457 (1276)
-.|-.|.|+..++-|..|.|||.--|.+. .+..+- +|+|+|++.|+.+-++-.+.+-- ++
T Consensus 154 -~~TpLh~A~~~~~~E~~k~Li~~~a~~~K-~~~~~~----~~iH~aa~s~s~e~mEi~l~~~g--------------~~ 213 (929)
T KOG0510|consen 154 -GFTPLHLAARKNKVEAKKELINKGADPCK-SDIDGN----FPIHEAARSGSKECMEIFLPEHG--------------YE 213 (929)
T ss_pred -CCchhhHHHhcChHHHHHHHHhcCCCCCc-ccCcCC----chHHHHHHhcchhhhhhhhcccc--------------ch
Confidence 11334555556788877788865554332 233333 78888888888887777665111 11
Q ss_pred HHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCC-CHHHHHHH---------hhhhcccccCCCHHH
Q psy9003 458 ECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG-TPEQLKYL---------VDECHKAGLFGTPEQ 527 (1276)
Q Consensus 458 ~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~-~~~~~~~~---------~t~~~~a~~~g~~e~ 527 (1276)
.-..+|.-+.-- -+..|-|--.|++|++|...+....+...- +..+.++. +|++|+|+.+|.+|.
T Consensus 214 r~~~in~~~n~~-----~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~s 288 (929)
T KOG0510|consen 214 RQTHINFDNNEK-----ATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPES 288 (929)
T ss_pred hhcccccccCCC-----CcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhH
Confidence 111222100000 356777777888888777777666665322 33444453 999999999999999
Q ss_pred HHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhcc---CCCChhhhhhhhhhhcccccCCCHHHH
Q psy9003 528 LKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG---LFGTPEQLKYLVDECHKAGLFGTPEQL 604 (1276)
Q Consensus 528 ~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~e~~ 604 (1276)
+-.|.+.+++||--+-+ .=|-.|-|-.-|++.-+.-|.+ |-| .|..|. ..-|..|=|...|+--.+
T Consensus 289 vd~Ll~~Ga~I~~kn~d-----~~spLH~AA~yg~~ntv~rLL~---~~~~rllne~D~---~g~tpLHlaa~~gH~~v~ 357 (929)
T KOG0510|consen 289 VDNLLGFGASINSKNKD-----EESPLHFAAIYGRINTVERLLQ---ESDTRLLNESDL---HGMTPLHLAAKSGHDRVV 357 (929)
T ss_pred HHHHHHcCCcccccCCC-----CCCchHHHHHcccHHHHHHHHh---CcCccccccccc---cCCCchhhhhhcCHHHHH
Confidence 99999999999944332 2344455669999999988887 333 333332 356777888899999999
Q ss_pred HHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHHHHHHHHHHhhcC
Q psy9003 605 KYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 654 (1276)
Q Consensus 605 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (1276)
++|.+.++.-++.+ +-+++=-+|.|.|..+|..-.+.+|.-.-..+|+
T Consensus 358 qlLl~~GA~~~~~~--e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~ 405 (929)
T KOG0510|consen 358 QLLLNKGALFLNMS--EADSDGNTALHLAAKYGNTSAVQKLISHGADIGV 405 (929)
T ss_pred HHHHhcChhhhccc--ccccCCchhhhHHHHhccHHHHHHHHHcCCceee
Confidence 99999999887633 2245667889999999998888888765555443
No 115
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.54 E-value=2.2e-07 Score=92.25 Aligned_cols=54 Identities=17% Similarity=0.118 Sum_probs=46.3
Q ss_pred cceEecCCcEEEEEEccCCceEEEEeecc-CCCcc------e---------EEEEEccCccccceEEEEEec
Q psy9003 66 GIHVQADNSVRCFEWAPSAQQLYLTGNVS-LTPWS------I---------MEEASLSSIKLIQSIQYILTG 121 (1276)
Q Consensus 66 Gah~~~~gg~~f~~wAP~A~~v~l~gdfn-~~~w~------m---------~~~~~~~~~~~g~~yky~i~~ 121 (1276)
||+... +|++|++|||+|++|.|+. |+ |+++. | +|+++|+++..|+.|+|+|.+
T Consensus 1 Ga~~~~-~g~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~g~~Y~y~v~g 70 (119)
T cd02852 1 GATIDA-GGVNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSVNRTGDVWHVFVEGLKPGQLYGYRVDG 70 (119)
T ss_pred CCeEeC-CCEEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcccccCCEEEEEECCCCCCCEEEEEECC
Confidence 677665 5799999999999999999 85 54221 4 999999999999999999996
No 116
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.50 E-value=1.9e-07 Score=87.06 Aligned_cols=47 Identities=13% Similarity=0.280 Sum_probs=40.0
Q ss_pred CcEEEEEEccCCceEEEEeecc-CCCcce------EEEEEccCccccc-eEEEEEe
Q psy9003 73 NSVRCFEWAPSAQQLYLTGNVS-LTPWSI------MEEASLSSIKLIQ-SIQYILT 120 (1276)
Q Consensus 73 gg~~f~~wAP~A~~v~l~gdfn-~~~w~m------~~~~~~~~~~~g~-~yky~i~ 120 (1276)
.-++|+.|||+|+.|+|+|+|| |+.+.| +|+++++ +++|+ .|||+|.
T Consensus 2 ~~vtf~~~ap~a~~V~v~G~fn~W~~~~m~~~~~G~w~~~~~-l~~G~y~Ykf~vd 56 (82)
T cd02861 2 VPVVFAYRGPEADSVYLAGSFNNWNAIPMEREGDGLWVVTVE-LRPGRYEYKFVVD 56 (82)
T ss_pred ccEEEEEECCCCCEEEEEeECCCCCcccCEECCCCcEEEEEe-CCCCcEEEEEEEC
Confidence 3589999999999999999996 655557 9999996 89999 7888774
No 117
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.45 E-value=3.3e-07 Score=86.25 Aligned_cols=58 Identities=12% Similarity=0.169 Sum_probs=42.6
Q ss_pred CCcEEEEEEccCCceEEEEeeccCCCcc---e------EEEEEccCccccc-eEEEEEecCCCCCCccccc
Q psy9003 72 DNSVRCFEWAPSAQQLYLTGNVSLTPWS---I------MEEASLSSIKLIQ-SIQYILTGVFGTPEQLKYL 132 (1276)
Q Consensus 72 ~gg~~f~~wAP~A~~v~l~gdfn~~~w~---m------~~~~~~~~~~~g~-~yky~i~~~~grp~~as~~ 132 (1276)
+++++|++|||+|++|.|+|+|| +|. | +|+++++.++.|. .|+|+|.+ ...|.-+|..
T Consensus 5 ~~~v~F~vwAP~A~~V~L~~~~~--~~~~~~m~~~~~G~W~~~v~~l~~g~Y~Y~~~vdg-~~~~DP~s~~ 72 (85)
T cd02858 5 DRTVTFRLFAPKANEVQVRGSWG--GAGSHPMTKDEAGVWSVTTGPLAPGIYTYSFLVDG-VRVIDPSNPT 72 (85)
T ss_pred CCcEEEEEECCCCCEEEEEeecC--CCccEeCeECCCeEEEEEECCCCCcEEEEEEEECC-eEecCCCCCc
Confidence 56899999999999999999994 555 6 9999997766552 45555543 2255555544
No 118
>PHA02795 ankyrin-like protein; Provisional
Probab=98.43 E-value=2.8e-07 Score=109.75 Aligned_cols=188 Identities=9% Similarity=-0.015 Sum_probs=138.2
Q ss_pred hccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhccccc--CCChhhhhhhhhhhhhh
Q psy9003 423 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL--FGTPEQLKYLVDECHKA 500 (1276)
Q Consensus 423 ~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~--~~~~e~~~~lv~~~~~~ 500 (1276)
.||..++-|+++.||+-+.+...-.+|= ... + ..-|..|++.. .|++|-+++|++-++++
T Consensus 83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~---------~~~---~------~~~~~L~~~~~n~~n~~eiV~~LI~~GADI 144 (437)
T PHA02795 83 LFAYITYKDIISALVSKNYMEDIFSIII---------KNC---N------SVQDLLLYYLSNAYVEIDIVDFMVDHGAVI 144 (437)
T ss_pred HHhhcchHHHHHHHHhcccccchhhhhh---------hcc---c------cccHHHHHHHHhcCCCHHHHHHHHHCCCCC
Confidence 5777888999999988777644333220 000 0 01366777776 79999999999999999
Q ss_pred ccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCC-CCc--chhhhhhhhhhccccCCCHHHHHHHHHhhhhcc
Q psy9003 501 GLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLF-GTP--EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 577 (1276)
Q Consensus 501 ~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~-~t~--~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~ 577 (1276)
|.+.. .|+.+.|...|+.|++++|...++.+... .++ ..+.| +..+.+-..+..|.+++|+..++++|
T Consensus 145 n~~~~-------~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~--t~l~~a~~~~~~eIve~LIs~GADIN 215 (437)
T PHA02795 145 YKIEC-------LNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQY--TRGFLVDEPTVLEIYKLCIPYIEDIN 215 (437)
T ss_pred CCCCC-------CCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhcc--chhHHHHhcCHHHHHHHHHhCcCCcC
Confidence 97544 68899999999999999999988754221 111 01222 34455667889999999999999999
Q ss_pred CCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccCCCC--------HHHHHHHHH
Q psy9003 578 LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT--------PEQLKYLVD 647 (1276)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ 647 (1276)
...... .|..+-|...|+.|.+++|+..++++|.+-..- .++.|.|...|+ .|.++.|+.
T Consensus 216 ~kD~~G-----~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G-----~TpLh~Aa~~g~~~~~~~~~~eIvelLL~ 283 (437)
T PHA02795 216 QLDAGG-----RTLLYRAIYAGYIDLVSWLLENGANVNAVMSNG-----YTCLDVAVDRGSVIARRETHLKILEILLR 283 (437)
T ss_pred cCCCCC-----CCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC-----CCHHHHHHHcCCcccccccHHHHHHHHHh
Confidence 443333 455555668899999999999999998876655 788888888784 688888875
No 119
>PHA02859 ankyrin repeat protein; Provisional
Probab=98.37 E-value=3.9e-07 Score=98.58 Aligned_cols=160 Identities=13% Similarity=-0.054 Sum_probs=111.1
Q ss_pred cccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccC--CChhhhhhhhh
Q psy9003 418 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLF--GTPEQLKYLVD 495 (1276)
Q Consensus 418 vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~--~~~e~~~~lv~ 495 (1276)
.||||.|+..|++++||+||.. . +..+... .|..|.|..+ ++.|.+++|++
T Consensus 22 ~~pL~~A~~~~~~~~vk~Li~~---~-------------------n~~~~~g-----~TpLh~a~~~~~~~~eiv~~Ll~ 74 (209)
T PHA02859 22 CNPLFYYVEKDDIEGVKKWIKF---V-------------------NDCNDLY-----ETPIFSCLEKDKVNVEILKFLIE 74 (209)
T ss_pred CcHHHHHHHhCcHHHHHHHHHh---h-------------------hccCccC-----CCHHHHHHHcCCCCHHHHHHHHH
Confidence 4999999999999999999842 0 1001111 4667777654 48999999999
Q ss_pred hhhhhccCCCHHHHHHHhhhhcccc---cCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhcccc--CCCHHHHHHHH
Q psy9003 496 ECHKAGLFGTPEQLKYLVDECHKAG---LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL--FGTPEQLKYLV 570 (1276)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~t~~~~a~---~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~--~~~~e~~~~l~ 570 (1276)
.++++|..... ...|+.|.|+ ..|+.|++++|++.++++|..+. +..|..+.|+. .+.+|.+++|+
T Consensus 75 ~gadvn~~~~~----~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~-----~G~TpLh~a~~~~~~~~~iv~~Li 145 (209)
T PHA02859 75 NGADVNFKTRD----NNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDE-----DGKNLLHMYMCNFNVRINVIKLLI 145 (209)
T ss_pred CCCCCCccCCC----CCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCC-----CCCCHHHHHHHhccCCHHHHHHHH
Confidence 99999875420 2245555543 24689999999999999885544 23333443333 57899999999
Q ss_pred HhhhhccC--CCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCC
Q psy9003 571 DECHKAGL--FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT 619 (1276)
Q Consensus 571 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~ 619 (1276)
+.++++|. ....+.++..+ ..+|+.|.+++|++.+++++.+-.
T Consensus 146 ~~gadin~~d~~g~t~Lh~~a------~~~~~~~iv~~Ll~~Gadi~~~d~ 190 (209)
T PHA02859 146 DSGVSFLNKDFDNNNILYSYI------LFHSDKKIFDFLTSLGIDINETNK 190 (209)
T ss_pred HcCCCcccccCCCCcHHHHHH------HhcCCHHHHHHHHHcCCCCCCCCC
Confidence 99999983 33334343211 246899999999999998876543
No 120
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.33 E-value=4.7e-07 Score=116.20 Aligned_cols=151 Identities=11% Similarity=-0.029 Sum_probs=84.8
Q ss_pred cccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccC
Q psy9003 386 AGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLF 465 (1276)
Q Consensus 386 a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~ 465 (1276)
|+..|+.++++.|++. .+++-..+.++. ||||.|+..|+.++|++|+..+ |+....+.+.
T Consensus 532 Aa~~g~~~~l~~Ll~~-G~d~n~~d~~G~----TpLh~Aa~~g~~~~v~~Ll~~g-adin~~d~~G-------------- 591 (823)
T PLN03192 532 VASTGNAALLEELLKA-KLDPDIGDSKGR----TPLHIAASKGYEDCVLVLLKHA-CNVHIRDANG-------------- 591 (823)
T ss_pred HHHcCCHHHHHHHHHC-CCCCCCCCCCCC----CHHHHHHHcChHHHHHHHHhcC-CCCCCcCCCC--------------
Confidence 4446788888888854 556767777787 8888888888888888887643 3322222222
Q ss_pred CChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcc
Q psy9003 466 GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPE 545 (1276)
Q Consensus 466 ~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~ 545 (1276)
.|..|.|...|+.+.+++|+..++..+.... -+..+.|...|+++.+++|++.++++|..+.
T Consensus 592 ---------~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~-------~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~-- 653 (823)
T PLN03192 592 ---------NTALWNAISAKHHKIFRILYHFASISDPHAA-------GDLLCTAAKRNDLTAMKELLKQGLNVDSEDH-- 653 (823)
T ss_pred ---------CCHHHHHHHhCCHHHHHHHHhcCcccCcccC-------chHHHHHHHhCCHHHHHHHHHCCCCCCCCCC--
Confidence 3455555555555555555543332221111 1234445555666666666655555553333
Q ss_pred hhhhhhhhhhccccCCCHHHHHHHHHhhhhcc
Q psy9003 546 QLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 577 (1276)
Q Consensus 546 ~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~ 577 (1276)
..-|..|.|..+|+.|.+++|++.+++++
T Consensus 654 ---~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~ 682 (823)
T PLN03192 654 ---QGATALQVAMAEDHVDMVRLLIMNGADVD 682 (823)
T ss_pred ---CCCCHHHHHHHCCcHHHHHHHHHcCCCCC
Confidence 23334444445555555555555555554
No 121
>PHA02859 ankyrin repeat protein; Provisional
Probab=98.24 E-value=1e-06 Score=95.46 Aligned_cols=148 Identities=12% Similarity=-0.081 Sum_probs=99.4
Q ss_pred CCChhHHHHHhhhcccccCCCChhhhhcccccchhcccc--CCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCC
Q psy9003 389 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLF--GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG 466 (1276)
Q Consensus 389 ~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~--~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~ 466 (1276)
.|+++.|++|+.. . -..+..+. ||||.|+.. ++.+++++||..+--.....+..
T Consensus 31 ~~~~~~vk~Li~~---~-n~~~~~g~----TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~---------------- 86 (209)
T PHA02859 31 KDDIEGVKKWIKF---V-NDCNDLYE----TPIFSCLEKDKVNVEILKFLIENGADVNFKTRDN---------------- 86 (209)
T ss_pred hCcHHHHHHHHHh---h-hccCccCC----CHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCC----------------
Confidence 6888888888852 1 12345566 999999753 47899999886542221111111
Q ss_pred ChhhHHHhhhhhcccc---cCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhccccc--CCCHHHHHHHHhhhhhcCCC
Q psy9003 467 TPEQLKYLVDECHKAG---LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL--FGTPEQLKYLVDECHKAGLF 541 (1276)
Q Consensus 467 ~~~~~~~~v~~~~~a~---~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~--~g~~e~~~~lv~~~~~~~~~ 541 (1276)
. .|..|.|. ..++.|.+++|++.++++|.+.. ...|+.+.|+. .+.+|++++|+..+.++|..
T Consensus 87 --g-----~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~-----~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~ 154 (209)
T PHA02859 87 --N-----LSALHHYLSFNKNVEPEILKILIDSGSSITEEDE-----DGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNK 154 (209)
T ss_pred --C-----CCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCC-----CCCCHHHHHHHhccCCHHHHHHHHHcCCCcccc
Confidence 1 34444433 23578899999999999887664 33566666554 57899999999999998865
Q ss_pred CCcchhhhhhhhhhc-cccCCCHHHHHHHHHhhhhcc
Q psy9003 542 GTPEQLKYLVDECHK-AGLFGTPEQLKYLVDECHKAG 577 (1276)
Q Consensus 542 ~t~~~l~~~~~~~~~-~~~~~~~e~~~~l~~~~~~~~ 577 (1276)
+.. .-|-.|. +..+|+.|.+++|++.+++++
T Consensus 155 d~~-----g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~ 186 (209)
T PHA02859 155 DFD-----NNNILYSYILFHSDKKIFDFLTSLGIDIN 186 (209)
T ss_pred cCC-----CCcHHHHHHHhcCCHHHHHHHHHcCCCCC
Confidence 552 2233332 234789999999999999888
No 122
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.22 E-value=1.1e-06 Score=112.84 Aligned_cols=159 Identities=10% Similarity=-0.031 Sum_probs=124.2
Q ss_pred ccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhh
Q psy9003 419 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 498 (1276)
Q Consensus 419 t~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~ 498 (1276)
++||.||..|+.++++.|++.+ +++...+.+. -|..|.|..+|..|-+++|++.+.
T Consensus 527 ~~L~~Aa~~g~~~~l~~Ll~~G-~d~n~~d~~G-----------------------~TpLh~Aa~~g~~~~v~~Ll~~ga 582 (823)
T PLN03192 527 SNLLTVASTGNAALLEELLKAK-LDPDIGDSKG-----------------------RTPLHIAASKGYEDCVLVLLKHAC 582 (823)
T ss_pred hHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCC-----------------------CCHHHHHHHcChHHHHHHHHhcCC
Confidence 8899999999999999999654 3333333222 578899999999999999999888
Q ss_pred hhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccC
Q psy9003 499 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 578 (1276)
Q Consensus 499 ~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~ 578 (1276)
++|.+.. ...|+.+.|+..|+.+++++|+..++..+..+.. +-.+.|...|+++.+++|++.++++|.
T Consensus 583 din~~d~-----~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~-------~~L~~Aa~~g~~~~v~~Ll~~Gadin~ 650 (823)
T PLN03192 583 NVHIRDA-----NGNTALWNAISAKHHKIFRILYHFASISDPHAAG-------DLLCTAAKRNDLTAMKELLKQGLNVDS 650 (823)
T ss_pred CCCCcCC-----CCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCc-------hHHHHHHHhCCHHHHHHHHHCCCCCCC
Confidence 8887664 4578999999999999999999766544432221 335667799999999999999999884
Q ss_pred CCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCC
Q psy9003 579 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG 618 (1276)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~ 618 (1276)
...+. .|..+-|..+|+.|.+++|++.+++.+...
T Consensus 651 ~d~~G-----~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~ 685 (823)
T PLN03192 651 EDHQG-----ATALQVAMAEDHVDMVRLLIMNGADVDKAN 685 (823)
T ss_pred CCCCC-----CCHHHHHHHCCcHHHHHHHHHcCCCCCCCC
Confidence 43332 566677778999999999999999886654
No 123
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=98.19 E-value=1.2e-05 Score=92.56 Aligned_cols=138 Identities=18% Similarity=0.263 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccc-cCCCCCCC----CCCCcCCCCCcHHHHHHHHH
Q psy9003 1036 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFH-DGPRGTHP----LWDSRLFNYSEIEVLRFLLS 1110 (1276)
Q Consensus 1036 ~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~-~~~~g~~~----~W~g~~LN~~np~Vr~~Iid 1110 (1276)
-+-|+.||++||++||+|.-=+.++...... .......+.++. ..++.... ..+..-||..+|+||+||++
T Consensus 69 ~DpL~~~I~eaHkrGlevHAW~~~~~~~~~~----~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~ 144 (311)
T PF02638_consen 69 FDPLEFMIEEAHKRGLEVHAWFRVGFNAPDV----SHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIID 144 (311)
T ss_pred ccHHHHHHHHHHHcCCEEEEEEEeecCCCch----hhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHH
Confidence 4679999999999999998877554332211 111112233322 11111100 01123589999999999999
Q ss_pred HHHHHHHhCCCcEEccCCccccccccCCCCCCCCC--CCccccCC-----CCC-------c-hHHHHHHHHHHHHHhhCC
Q psy9003 1111 NLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSG--HYDEYFGL-----NVD-------T-DALIYLMVANKFLHDKYP 1175 (1276)
Q Consensus 1111 sl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~--~~~~~~~~-----~~d-------~-~a~~Fl~el~~~Vr~~~P 1175 (1276)
.++-.++.|.|||+.||-.- |.....|.++.. .+.++.+. ..+ . .--.|.+++.+.||+.+|
T Consensus 145 ~v~Eiv~~YdvDGIhlDdy~---yp~~~~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~~ik~~kP 221 (311)
T PF02638_consen 145 IVKEIVKNYDVDGIHLDDYF---YPPPSFGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYDAIKAIKP 221 (311)
T ss_pred HHHHHHhcCCCCeEEecccc---cccccCCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999321 211111111100 01112110 111 0 112477889999999999
Q ss_pred CeEEE
Q psy9003 1176 EIITI 1180 (1276)
Q Consensus 1176 dvilI 1180 (1276)
++.+=
T Consensus 222 ~v~~s 226 (311)
T PF02638_consen 222 WVKFS 226 (311)
T ss_pred CCeEE
Confidence 97663
No 124
>KOG0509|consensus
Probab=98.16 E-value=2.7e-06 Score=103.01 Aligned_cols=188 Identities=18% Similarity=0.070 Sum_probs=124.1
Q ss_pred hhhhhcccccCCChHHHHHHHhhhhccCCCCCccccchhhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhcc
Q psy9003 265 LVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDE 344 (1276)
Q Consensus 265 li~~~h~~~~~~~ie~~~yli~e~~~~~~~~~~~~~t~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~ 344 (1276)
+...-++|...|.+|.||-|++-=..+.-.++. -+.+.+|=|+.+..+++++|||+++-.+|-..+ .-..|+
T Consensus 44 ~~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~----~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG----~l~stP 115 (600)
T KOG0509|consen 44 SLDDIVKATQYGELETVKELVESEGESVNNPDR----EGVTLLHWAAINNRLDVARYLISHGADVNAIGG----VLGSTP 115 (600)
T ss_pred hhhhhhhHhhcchHHHHHHHHhhcCcCCCCCCc----CCccceeHHHHcCcHHHHHHHHHcCCCccccCC----CCCCCc
Confidence 334444555556677777777631233333333 345566889999999999999998765553322 123588
Q ss_pred ccccccCCChhhhHHhhhhhccccC-CCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchh
Q psy9003 345 CHKAGLFGTPEQLKYLVDECHKAGL-FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHK 423 (1276)
Q Consensus 345 ~~~a~~~g~ie~~~yLi~~~h~~~~-~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~ 423 (1276)
.|+|+++||+-+|.+|+.......+ +...-...|+.. ..|++=+|.||+-.- =|+-..|++|+ ||||.
T Consensus 116 LHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~------~~~~~~~vayll~~~-~d~d~~D~~gr----TpLmw 184 (600)
T KOG0509|consen 116 LHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAA------QFGHTALVAYLLSKG-ADIDLRDNNGR----TPLMW 184 (600)
T ss_pred chHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHH------HhCchHHHHHHHHhc-ccCCCcCCCCC----CHHHH
Confidence 9999999999999999988875553 444444444443 358999999999777 56667788899 99999
Q ss_pred ccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhh
Q psy9003 424 AGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLV 494 (1276)
Q Consensus 424 a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv 494 (1276)
||.+|.-+.+..|+.=+.=-.+..++++ -|..|.|.+.|.++-+++|+
T Consensus 185 Aaykg~~~~v~~LL~f~a~~~~~d~~~g-----------------------~TpLHwa~~~gN~~~v~Ll~ 232 (600)
T KOG0509|consen 185 AAYKGFALFVRRLLKFGASLLLTDDNHG-----------------------NTPLHWAVVGGNLTAVKLLL 232 (600)
T ss_pred HHHhcccHHHHHHHHhcccccccccccC-----------------------CchHHHHHhcCCcceEehhh
Confidence 9988776644444333322222222232 46677777777777766333
No 125
>KOG0509|consensus
Probab=97.94 E-value=6.1e-06 Score=100.08 Aligned_cols=191 Identities=18% Similarity=0.110 Sum_probs=133.4
Q ss_pred HhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHH
Q psy9003 380 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 459 (1276)
Q Consensus 380 ~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~ 459 (1276)
.+.--+|...|.++.||-||+--..+.-++|.++. |.||-||.++..||++|||+-+- ++++
T Consensus 45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~----tlLHWAAiNNrl~v~r~li~~ga------dvn~-------- 106 (600)
T KOG0509|consen 45 LDDIVKATQYGELETVKELVESEGESVNNPDREGV----TLLHWAAINNRLDVARYLISHGA------DVNA-------- 106 (600)
T ss_pred hhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCc----cceeHHHHcCcHHHHHHHHHcCC------Cccc--------
Confidence 34444555578999999999765777888888888 99999999999999999986432 1111
Q ss_pred hHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcC
Q psy9003 460 HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 539 (1276)
Q Consensus 460 ~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~ 539 (1276)
+-+... =|+.|-|..+|++--+.+|+.-+++.+.++- ..+++.|=|...|++-.++||+...++++
T Consensus 107 ----~gG~l~-----stPLHWAar~G~~~vv~lLlqhGAdpt~~D~-----~G~~~lHla~~~~~~~~vayll~~~~d~d 172 (600)
T KOG0509|consen 107 ----IGGVLG-----STPLHWAARNGHISVVDLLLQHGADPTLKDK-----QGLTPLHLAAQFGHTALVAYLLSKGADID 172 (600)
T ss_pred ----cCCCCC-----CCcchHHHHcCcHHHHHHHHHcCCCCceecC-----CCCcHHHHHHHhCchHHHHHHHHhcccCC
Confidence 000011 2677888888888888888888888876664 45678888888888888888888888877
Q ss_pred CCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCC-ChhhhhhhhhhhcccccCCCHHHHHHHHhhhh
Q psy9003 540 LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG-TPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 612 (1276)
Q Consensus 540 ~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~ 612 (1276)
+-+. ..=|..+-|--+|.-.-+..|...++.++..+ +.- +|+.|=|.+-|+++.+++|++.++
T Consensus 173 ~~D~-----~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g-----~TpLHwa~~~gN~~~v~Ll~~g~~ 236 (600)
T KOG0509|consen 173 LRDN-----NGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHG-----NTPLHWAVVGGNLTAVKLLLEGGA 236 (600)
T ss_pred CcCC-----CCCCHHHHHHHhcccHHHHHHHHhcccccccccccC-----CchHHHHHhcCCcceEehhhhcCC
Confidence 6666 33334444445554444777777777776443 444 777777888888888885555544
No 126
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=97.94 E-value=1.7e-05 Score=100.77 Aligned_cols=180 Identities=13% Similarity=-0.048 Sum_probs=108.8
Q ss_pred cccCCChhHHHHHhhhcccccCC-CChhhhhcccccch-hccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhc
Q psy9003 386 AGLFGTPEQLKYLVDECHKAGLF-GTPEQLKYLVDECH-KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 463 (1276)
Q Consensus 386 a~~~~~id~vkyLi~~~h~~~~~-~~~~~~~~~vt~lh-~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~ 463 (1276)
|+..|+++.|+.|++.....+++ .+..+. |+|| .|+..++.++++.|++.+. .+...-+.|.-++.
T Consensus 24 A~~~g~~~~v~~lL~~~~~~~in~~d~~G~----t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~A~~--- 91 (743)
T TIGR00870 24 AAERGDLASVYRDLEEPKKLNINCPDRLGR----SALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHAISL--- 91 (743)
T ss_pred HHHcCCHHHHHHHhccccccCCCCcCccch----hHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHHHHh---
Confidence 33468888888888764444444 456677 9999 7778888999999988765 12223234433322
Q ss_pred cCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCC
Q psy9003 464 LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT 543 (1276)
Q Consensus 464 ~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t 543 (1276)
+..+.++.++.....+...+... ..++...+ .......|+.|.|+..|+.|++|+|++.++++|....
T Consensus 92 --~~~~~v~~ll~~l~~~~~~~~~~---------~~~~~~~~-~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~ 159 (743)
T TIGR00870 92 --EYVDAVEAILLHLLAAFRKSGPL---------ELANDQYT-SEFTPGITALHLAAHRQNYEIVKLLLERGASVPARAC 159 (743)
T ss_pred --ccHHHHHHHHHHHhhcccccCch---------hhhccccc-cccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcC
Confidence 11122222221111111000000 00111000 0011347999999999999999999999999984322
Q ss_pred c---------chhhhhhhhhhccccCCCHHHHHHHHHhhhhcc--CCCChhhhhhhh
Q psy9003 544 P---------EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG--LFGTPEQLKYLV 589 (1276)
Q Consensus 544 ~---------~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~--~~~~~~~~~~~~ 589 (1276)
. +.+.+.-+-.+.|...|+.+.+++|++.++++| .+.+.+.+++.+
T Consensus 160 ~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~ 216 (743)
T TIGR00870 160 GDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLV 216 (743)
T ss_pred CchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHH
Confidence 1 244566677788888999999999999999888 444556666544
No 127
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.90 E-value=3e-05 Score=70.31 Aligned_cols=50 Identities=24% Similarity=0.247 Sum_probs=43.8
Q ss_pred CcEEEEEEccCCceEEEEeeccCCC-cc---e------EEEEEccCcc-ccceEEEEEecCCC
Q psy9003 73 NSVRCFEWAPSAQQLYLTGNVSLTP-WS---I------MEEASLSSIK-LIQSIQYILTGVFG 124 (1276)
Q Consensus 73 gg~~f~~wAP~A~~v~l~gdfn~~~-w~---m------~~~~~~~~~~-~g~~yky~i~~~~g 124 (1276)
++++|++|||+|+.|.|.++|| + |. | +|++.++... .|..|+|++.+..+
T Consensus 4 ~~v~f~v~ap~a~~v~l~~~~~--~~~~~~~~~~~~~g~w~~~v~~~~~~~~~Y~~~v~~~~~ 64 (83)
T cd02688 4 KGVTFTVRGPKAQRVSLAGSFN--GDTQLIPMTKVEDGYWEVELPLPSPGKYQYKYVLDGGKG 64 (83)
T ss_pred ccEEEEEECCCCCEEEEEEEEC--CCCCcccCEECCCceEEEEEcCCCCCCeEEEEEEeCCCC
Confidence 3799999999999999999995 4 22 5 8999999988 89999999997765
No 128
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.88 E-value=3.6e-05 Score=69.79 Aligned_cols=58 Identities=24% Similarity=0.206 Sum_probs=48.3
Q ss_pred CceEEEEEccCCcEEEEEccCCCCccccccceecCCCeEEEEcCCCCCCCcccCcccEEEEEEEE
Q psy9003 780 DECHKAGLLCFMHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRN 844 (1276)
Q Consensus 780 D~a~FalwAP~A~~VsLvGDFN~wd~~~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~ 844 (1276)
.+++|++|||.|++|+|+++|++| ...++|.+...|+|++.++... +.+..|+|++.+
T Consensus 4 ~~v~f~v~ap~a~~v~l~~~~~~~-~~~~~~~~~~~g~w~~~v~~~~------~~~~~Y~~~v~~ 61 (83)
T cd02688 4 KGVTFTVRGPKAQRVSLAGSFNGD-TQLIPMTKVEDGYWEVELPLPS------PGKYQYKYVLDG 61 (83)
T ss_pred ccEEEEEECCCCCEEEEEEEECCC-CCcccCEECCCceEEEEEcCCC------CCCeEEEEEEeC
Confidence 468999999999999999888774 3578999888899999998764 135799999964
No 129
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=97.87 E-value=4.2e-05 Score=97.25 Aligned_cols=250 Identities=12% Similarity=-0.080 Sum_probs=142.6
Q ss_pred cchhhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhcccc-ccccCCChhhhHHhhhhhccccCCCChhhHHH
Q psy9003 300 LKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH-KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKY 378 (1276)
Q Consensus 300 ~t~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~-~a~~~g~ie~~~yLi~~~h~~~~~~~~e~~~~ 378 (1276)
.+-......+|+..|+++.++.|++.....++|.+|... .|+.| .|+..++.|++++|++... .+...+...+
T Consensus 14 ~~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G---~t~Lh~~A~~~~~~eiv~lLl~~g~---~~~~G~T~Lh 87 (743)
T TIGR00870 14 LSDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLG---RSALFVAAIENENLELTELLLNLSC---RGAVGDTLLH 87 (743)
T ss_pred CCHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccc---hhHHHHHHHhcChHHHHHHHHhCCC---CCCcChHHHH
Confidence 444566777888899999999998875555666555333 34556 6667788999999987654 3344555555
Q ss_pred HHhhhcccccCCChhHHHHHhhhccc--------ccCC-CChhhhhcccccchhccccCCHhHHHhhcccccccccCCCh
Q psy9003 379 LVDECHKAGLFGTPEQLKYLVDECHK--------AGLF-GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP 449 (1276)
Q Consensus 379 ~~~~~~~a~~~~~id~vkyLi~~~h~--------~~~~-~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~ 449 (1276)
.+... ...+.-+++++|.+.... ++.. ....+. ||||.|+.+|+.++|++|++.+........
T Consensus 88 ~A~~~---~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~----TpLhlAa~~~~~eiVklLL~~GAdv~~~~~- 159 (743)
T TIGR00870 88 AISLE---YVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGI----TALHLAAHRQNYEIVKLLLERGASVPARAC- 159 (743)
T ss_pred HHHhc---cHHHHHHHHHHHhhcccccCchhhhccccccccCCCC----cHHHHHHHhCCHHHHHHHHhCCCCCCcCcC-
Confidence 44321 012233445555432211 1111 112344 999999999999999999986533321100
Q ss_pred hhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCC-----C
Q psy9003 450 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG-----T 524 (1276)
Q Consensus 450 e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g-----~ 524 (1276)
.+.+.+ ....+.+.+--+..|.|...|+.+.+++|++..+++|...+ ...|..|-|...+ .
T Consensus 160 ------~~~~~~---~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~-----~g~T~Lh~A~~~~~~~~~~ 225 (743)
T TIGR00870 160 ------GDFFVK---SQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADS-----LGNTLLHLLVMENEFKAEY 225 (743)
T ss_pred ------Cchhhc---CCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhh-----hhhHHHHHHHhhhhhhHHH
Confidence 000000 01112223335677777788889999999988887776543 3456666666555 1
Q ss_pred ----HHHHHHHHhhhhhcCCCCCcchhh--hhhhhhhccccCCCHHHHHHHHHhhhhcc
Q psy9003 525 ----PEQLKYLVDECHKAGLFGTPEQLK--YLVDECHKAGLFGTPEQLKYLVDECHKAG 577 (1276)
Q Consensus 525 ----~e~~~~lv~~~~~~~~~~t~~~l~--~~~~~~~~~~~~~~~e~~~~l~~~~~~~~ 577 (1276)
....+++++..+...-....+.+. ..-|..+-|...|+++.+++|+++..+.+
T Consensus 226 ~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~~~~k 284 (743)
T TIGR00870 226 EELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKYKQK 284 (743)
T ss_pred HHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHHHhcc
Confidence 223334444433321000000111 22344466778888888888888765544
No 130
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=97.65 E-value=0.00023 Score=72.83 Aligned_cols=86 Identities=27% Similarity=0.355 Sum_probs=59.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCC--------CCCCCcCCCCCcH
Q psy9003 1031 GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTH--------PLWDSRLFNYSEI 1102 (1276)
Q Consensus 1031 ~~~Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~--------~~W~g~~LN~~np 1102 (1276)
|.++ .+-|+++|++||++||+|+.=+-++ .... .-...|.|+..+++|+. +.|...++|.
T Consensus 39 p~L~-~Dllge~v~a~h~~Girv~ay~~~~--~d~~------~~~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~ns--- 106 (132)
T PF14871_consen 39 PGLK-RDLLGEQVEACHERGIRVPAYFDFS--WDED------AAERHPEWFVRDADGRPMRGERFGYPGWYTCCLNS--- 106 (132)
T ss_pred CCCC-cCHHHHHHHHHHHCCCEEEEEEeee--cChH------HHHhCCceeeECCCCCCcCCCCcCCCCceecCCCc---
Confidence 4454 5889999999999999998655555 1110 11234677766666541 2243445543
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEccCC
Q psy9003 1103 EVLRFLLSNLRWYLDEYQFDGFRFDG 1128 (1276)
Q Consensus 1103 ~Vr~~Iidsl~~Wv~eygVDGFRfD~ 1128 (1276)
..+++++..++--++.|.+|||=||.
T Consensus 107 ~Y~e~~~~~i~Ei~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 107 PYREFLLEQIREILDRYDVDGIFFDI 132 (132)
T ss_pred cHHHHHHHHHHHHHHcCCCCEEEecC
Confidence 45689999999999999999999883
No 131
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=97.62 E-value=0.00015 Score=67.69 Aligned_cols=64 Identities=27% Similarity=0.331 Sum_probs=49.7
Q ss_pred ceEEEEEccCCcEEEEEccCCCCccccccceecCCCeEEEEcCCCCCCCcccCcccEEEEEEEEeCCeeeeecCCcceE
Q psy9003 781 ECHKAGLLCFMHVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATY 859 (1276)
Q Consensus 781 ~a~FalwAP~A~~VsLvGDFN~wd~~~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~~dG~~~~~~DPYAka 859 (1276)
.+.|+..+ .|++|+|.|+|++|+. ..||.+...| |++.++ ++.|. +.|+|.| ||.+ ..||-...
T Consensus 3 ~v~f~~~~-~a~~V~v~G~F~~W~~-~~pm~~~~~~-~~~~~~-L~~g~------y~YkF~V---dg~w--~~d~~~~~ 66 (79)
T cd02859 3 PTTFVWPG-GGKEVYVTGSFDNWKK-KIPLEKSGKG-FSATLR-LPPGK------YQYKFIV---DGEW--RHSPDLPT 66 (79)
T ss_pred EEEEEEcC-CCcEEEEEEEcCCCCc-cccceECCCC-cEEEEE-cCCCC------EEEEEEE---CCEE--EeCCCCCc
Confidence 36788888 8999999999999975 6899987777 999885 44453 6778876 7865 67885543
No 132
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=97.60 E-value=0.00014 Score=86.52 Aligned_cols=90 Identities=24% Similarity=0.295 Sum_probs=63.9
Q ss_pred cCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCccccccccccccCCCcccCCCcccccccccc
Q psy9003 912 CASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMDK 991 (1276)
Q Consensus 912 ~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~S~~~~~WGYdp~nyf~~d~ 991 (1276)
.|.|.+-.+ .|+.++++|+|. |++. |+++. +..+| -|...|..
T Consensus 18 ~G~~~~W~~-~l~~~~~~GYNm----IHft--------------------Plq~~--G~S~S------~YSI~Dql---- 60 (423)
T PF14701_consen 18 MGPFSDWEK-HLKVISEKGYNM----IHFT--------------------PLQER--GESNS------PYSIYDQL---- 60 (423)
T ss_pred cCCHhHHHH-HHHHHHHcCCcE----EEec--------------------ccccC--CCCCC------Cccccchh----
Confidence 377776665 599999999999 9999 66665 22233 56655555
Q ss_pred ccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHH-HcCCEEEEEEeccccCCcccC
Q psy9003 992 EMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH-KAGLYVLLDVVHSHASKNVLD 1068 (1276)
Q Consensus 992 ~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alH-k~GI~VILDvV~NHt~~~~~~ 1068 (1276)
..++.|..+ ..-.+.+++++||.+++ +.||.+|.|||+|||+.+++|
T Consensus 61 -----------------~~~~~~~~~-------------~~~~~~~~v~~~v~~~~~~~~ll~~~DvV~NHtA~nS~W 108 (423)
T PF14701_consen 61 -----------------KFDPDFFPP-------------GKESTFEDVKEFVKEAEKKYGLLSMTDVVLNHTANNSPW 108 (423)
T ss_pred -----------------hcChhhcCC-------------CccccHHHHHHHHHHHHHHcCceEEEEEeeccCcCCChH
Confidence 222112211 11145789999999996 799999999999999998754
No 133
>PHA02743 Viral ankyrin protein; Provisional
Probab=97.57 E-value=5.2e-05 Score=79.29 Aligned_cols=138 Identities=10% Similarity=0.009 Sum_probs=80.8
Q ss_pred ccccCCCChhhhhcccccchhccccCCHhHHH----hhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhh
Q psy9003 403 HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLK----YLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 478 (1276)
Q Consensus 403 h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~----yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~ 478 (1276)
+|+....+.++. +++|.|++.|..+.++ +|++.+. .++..+... .|..
T Consensus 10 ~~~~~~~~~~~~----~~l~~a~~~g~~~~l~~~~~~l~~~g~-------------------~~~~~d~~g-----~t~L 61 (166)
T PHA02743 10 NLGAVEIDEDEQ----NTFLRICRTGNIYELMEVAPFISGDGH-------------------LLHRYDHHG-----RQCT 61 (166)
T ss_pred chHHhhhccCCC----cHHHHHHHcCCHHHHHHHHHHHhhcch-------------------hhhccCCCC-----CcHH
Confidence 455566666666 8888888777774433 3332111 111111111 5667
Q ss_pred cccccCCChhh---hhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHh-hhhhcCCCCCcchhhhhhhhh
Q psy9003 479 HKAGLFGTPEQ---LKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD-ECHKAGLFGTPEQLKYLVDEC 554 (1276)
Q Consensus 479 ~~a~~~~~~e~---~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~-~~~~~~~~~t~~~l~~~~~~~ 554 (1276)
|.|...|+.+. +++|+....++|.... +..-|++|.|+..|+++++++|+. .+.+++..+. ...|..
T Consensus 62 h~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~----~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~-----~g~tpL 132 (166)
T PHA02743 62 HMVAWYDRANAVMKIELLVNMGADINAREL----GTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINY-----QHETAY 132 (166)
T ss_pred HHHHHhCccCHHHHHHHHHHcCCCCCCCCC----CCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCC-----CCCCHH
Confidence 77776666554 5677777766665431 133567777777777777777774 4555553332 344555
Q ss_pred hccccCCCHHHHHHHHHhhhhcc
Q psy9003 555 HKAGLFGTPEQLKYLVDECHKAG 577 (1276)
Q Consensus 555 ~~~~~~~~~e~~~~l~~~~~~~~ 577 (1276)
+.|...|+.+.+++|+..++++|
T Consensus 133 ~~A~~~~~~~iv~~Ll~~ga~~~ 155 (166)
T PHA02743 133 HIAYKMRDRRMMEILRANGAVCD 155 (166)
T ss_pred HHHHHcCCHHHHHHHHHcCCCCC
Confidence 55556677777777777777766
No 134
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=97.54 E-value=0.00022 Score=89.71 Aligned_cols=60 Identities=18% Similarity=0.132 Sum_probs=47.2
Q ss_pred hhccceEec-CC-cEEEEEEccCCceEEEE-eec--cCC---Ccce------EEEEEccCccccceEEEEEecC
Q psy9003 63 NKYGIHVQA-DN-SVRCFEWAPSAQQLYLT-GNV--SLT---PWSI------MEEASLSSIKLIQSIQYILTGV 122 (1276)
Q Consensus 63 ~~fGah~~~-~g-g~~f~~wAP~A~~v~l~-gdf--n~~---~w~m------~~~~~~~~~~~g~~yky~i~~~ 122 (1276)
--+||.... ++ |+.|.+|+.+|++|.|+ -|+ +-. -|.| +|.+++|++++|+.|.||+.+.
T Consensus 18 ~plga~~~~~~~~g~~f~l~s~~a~~v~l~l~d~~~~~~~~~~~~~~~~~G~iw~~~~p~~~~g~~y~yr~~g~ 91 (697)
T COG1523 18 YPLGATVIDIDGDGVNFALFSSHAERVELCLFDEAGNTEEGRLYPYDGELGAIWHLWLPGAKPGQVYGYRVHGP 91 (697)
T ss_pred ccccceeeeccCcceEEeeeccccceEEEEecCcccccccccccccCCccccEEEEEcCCCceeeEEEEecCCC
Confidence 357888644 33 89999999999999998 333 111 1554 9999999999999999999773
No 135
>KOG4369|consensus
Probab=97.52 E-value=0.00021 Score=90.17 Aligned_cols=235 Identities=14% Similarity=0.028 Sum_probs=134.6
Q ss_pred hccccccccCCChhhhHHhhhhh----ccccCCCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcc
Q psy9003 342 VDECHKAGLFGTPEQLKYLVDEC----HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYL 417 (1276)
Q Consensus 342 ~~~~~~a~~~g~ie~~~yLi~~~----h~~~~~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~ 417 (1276)
-|+.|.||+-||-|+|-+||+.. |.++..=++ +|- +.-.|||-+|.-|....-..-...+..+-
T Consensus 758 ~t~LT~acaggh~e~vellv~rganiehrdkkgf~p-----lIm----aatagh~tvV~~llk~ha~veaQsdrtkd--- 825 (2131)
T KOG4369|consen 758 KTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVP-----LIM----AATAGHITVVQDLLKAHADVEAQSDRTKD--- 825 (2131)
T ss_pred cccccccccCccHHHHHHHHHhcccccccccccchh-----hhh----hcccCchHHHHHHHhhhhhhhhhcccccC---
Confidence 37889999999999999999885 555421111 110 01135666655554332222333444444
Q ss_pred cccchhccccCCHhHHHhhcccccc--------------cccCCChhhHHHHHHHHhHhc-cCCChhhHHHhhhhhcccc
Q psy9003 418 VDECHKAGLFGTPEQLKYLVDECHK--------------AGLFGTPEQLKYLVDECHKAG-LFGTPEQLKYLVDECHKAG 482 (1276)
Q Consensus 418 vt~lh~a~~~~~~~~~~yli~~~~~--------------~~~~~~~e~l~~l~~~~~~~~-~~~~~~~~~~~v~~~~~a~ 482 (1276)
|+|..|+.-|+-+||+.||+-+-- +---|.++-+..|..-..||| +.++- -=|...--|-
T Consensus 826 -t~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSk----lgisPLmlat 900 (2131)
T KOG4369|consen 826 -TMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSK----LGISPLMLAT 900 (2131)
T ss_pred -ceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccc----cCcchhhhhh
Confidence 667777766777777776643321 111234444445555555555 22221 0144555566
Q ss_pred cCCChhhhhhhhhhhhhhccCC-CHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCC
Q psy9003 483 LFGTPEQLKYLVDECHKAGLFG-TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG 561 (1276)
Q Consensus 483 ~~~~~e~~~~lv~~~~~~~~~~-~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~ 561 (1276)
++|+-+-.+.|.+.+-+||-.+ | --=|..|-||-+|-.|++++|...- .||-- -.+-..|-.-++--.|
T Consensus 901 mngh~~at~~ll~~gsdiNaqIeT-----NrnTaltla~fqgr~evv~lLLa~~--anveh---Raktgltplme~AsgG 970 (2131)
T KOG4369|consen 901 MNGHQAATLSLLQPGSDINAQIET-----NRNTALTLALFQGRPEVVFLLLAAQ--ANVEH---RAKTGLTPLMEMASGG 970 (2131)
T ss_pred hccccHHHHHHhcccchhcccccc-----ccccceeeccccCcchHHHHHHHHh--hhhhh---hcccCCcccchhhcCC
Confidence 8889899999999999998654 1 0135667777777777777776432 12100 1122344444555667
Q ss_pred CHHHHHHHHHhhhhcc---CCCChhhhhhhhhhhcccccCCCHHHHHHHHh
Q psy9003 562 TPEQLKYLVDECHKAG---LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 609 (1276)
Q Consensus 562 ~~e~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ 609 (1276)
=+|+=.+|.+++++-| |--|-+ |+.|-+.+.|+-.-+.+|..
T Consensus 971 yvdvg~~li~~gad~nasPvp~T~d------talti~a~kGh~kfv~~lln 1015 (2131)
T KOG4369|consen 971 YVDVGNLLIAAGADTNASPVPNTWD------TALTIPANKGHTKFVPKLLN 1015 (2131)
T ss_pred ccccchhhhhcccccccCCCCCcCC------ccceeecCCCchhhhHHhhC
Confidence 7777777777777777 444444 45555556666555555543
No 136
>KOG0507|consensus
Probab=97.46 E-value=0.0001 Score=90.82 Aligned_cols=58 Identities=22% Similarity=0.052 Sum_probs=35.6
Q ss_pred hhccCCCCCccccchhhhhhcccccCCCHHHHHHHhhhhh--ccCCCCcccchhhhhccccccccCCChhhhHHh
Q psy9003 288 CHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH--KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYL 360 (1276)
Q Consensus 288 ~~~~~~~~~~~~~t~~~~~~~~a~~~gsi~~l~~Lv~~~~--~~~~~~~~~~~~~~~~~~~~a~~~g~ie~~~yL 360 (1276)
..|++| ...|.+|.|.++|.+++.++|.+.-+ .+.-+.+ .++.|.|.-+|+.||||.|
T Consensus 42 ~n~qd~--------~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg-------~~plhlaaw~g~~e~vkml 101 (854)
T KOG0507|consen 42 HNLQDY--------SGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKG-------ILPLHLAAWNGNLEIVKML 101 (854)
T ss_pred ccccCc--------cchhHHHHHHhcCchHHHHHHhcchhhhhhhhccC-------cceEEehhhcCcchHHHHH
Confidence 357766 25667788888999999999987644 1111111 3445555556666666665
No 137
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.43 E-value=0.71 Score=61.94 Aligned_cols=208 Identities=15% Similarity=0.144 Sum_probs=147.8
Q ss_pred cCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCC
Q psy9003 445 LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT 524 (1276)
Q Consensus 445 ~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~ 524 (1276)
..|..+...-+.+.+.+.++..+....-.+|..+-+ +|.++...-+.+.+.+.+...+....-.++... +..|.
T Consensus 591 k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k---~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~---~k~G~ 664 (1060)
T PLN03218 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ---KGDWDFALSIYDDMKKKGVKPDEVFFSALVDVA---GHAGD 664 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HhCCC
Confidence 467778777788888888877777766666665543 577888777778888777555533333344433 45788
Q ss_pred HHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHH
Q psy9003 525 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQL 604 (1276)
Q Consensus 525 ~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 604 (1276)
++...-+.+.+.+.++..........|..+. ..|.++.+..+.+.+.+.++..+.......+.... ..|.++.+
T Consensus 665 ~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~---k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~---k~G~~eeA 738 (1060)
T PLN03218 665 LDKAFEILQDARKQGIKLGTVSYSSLMGACS---NAKNWKKALELYEDIKSIKLRPTVSTMNALITALC---EGNQLPKA 738 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---HCCCHHHH
Confidence 9999889999988876554444444444444 46889999999999998887665544444443333 46889999
Q ss_pred HHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHHHHHHHHHHhhcCCCChHHHhhhhhh
Q psy9003 605 KYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDE 667 (1276)
Q Consensus 605 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (1276)
--+++.|.+.|.+-|..--..++.+|.+ .|.++.++.+.+.|.+.|-..+......+++.
T Consensus 739 lelf~eM~~~Gi~Pd~~Ty~sLL~a~~k---~G~le~A~~l~~~M~k~Gi~pd~~tynsLIgl 798 (1060)
T PLN03218 739 LEVLSEMKRLGLCPNTITYSILLVASER---KDDADVGLDLLSQAKEDGIKPNLVMCRCITGL 798 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 9999999999888776655567777776 47799999999999998876666555555554
No 138
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=97.39 E-value=0.00017 Score=66.74 Aligned_cols=87 Identities=25% Similarity=0.235 Sum_probs=55.3
Q ss_pred cccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccc
Q psy9003 517 HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 596 (1276)
Q Consensus 517 ~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (1276)
+.|+.+|+++.+++|+....+++. ....| +.|+..|++|-+++|++.++++|... ...-|.++.|.
T Consensus 2 ~~A~~~~~~~~~~~ll~~~~~~~~--~~~~l-------~~A~~~~~~~~~~~Ll~~g~~~~~~~-----~~g~t~L~~A~ 67 (89)
T PF12796_consen 2 HIAAQNGNLEILKFLLEKGADINL--GNTAL-------HYAAENGNLEIVKLLLENGADINSQD-----KNGNTALHYAA 67 (89)
T ss_dssp HHHHHTTTHHHHHHHHHTTSTTTS--SSBHH-------HHHHHTTTHHHHHHHHHTTTCTT-BS-----TTSSBHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHCcCCCCC--CCCHH-------HHHHHcCCHHHHHHHHHhcccccccC-----CCCCCHHHHHH
Confidence 456777888888888876666655 21233 34447777888888888777766332 12244555555
Q ss_pred cCCCHHHHHHHHhhhhhccCC
Q psy9003 597 LFGTPEQLKYLVDECHKAGLF 617 (1276)
Q Consensus 597 ~~~~~e~~~~l~~~~~~~~~~ 617 (1276)
.+|++|.+++|++.+.++|.+
T Consensus 68 ~~~~~~~~~~Ll~~g~~~~~~ 88 (89)
T PF12796_consen 68 ENGNLEIVKLLLEHGADVNIR 88 (89)
T ss_dssp HTTHHHHHHHHHHTTT-TTSS
T ss_pred HcCCHHHHHHHHHcCCCCCCc
Confidence 778888888888777777653
No 139
>PHA02741 hypothetical protein; Provisional
Probab=97.39 E-value=0.00011 Score=76.80 Aligned_cols=122 Identities=13% Similarity=-0.037 Sum_probs=83.3
Q ss_pred hhhhcccccCCCHHHHHHHhhhh----hccCCCCcccchhhhhccccccccCCC----hhhhHHhhhhhccccC-CC-Ch
Q psy9003 304 VDECHKAGLFGTPEQLKYLVDEC----HKAGLFGTPEQLKYLVDECHKAGLFGT----PEQLKYLVDECHKAGL-FG-TP 373 (1276)
Q Consensus 304 ~~~~~~a~~~gsi~~l~~Lv~~~----~~~~~~~~~~~~~~~~~~~~~a~~~g~----ie~~~yLi~~~h~~~~-~~-~~ 373 (1276)
.|.+|.|+..|+.+++++|+... +.+.++..|.. ..|..|.|+..|+ ++++++|+...-.++. +. ..
T Consensus 22 ~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~---g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g 98 (169)
T PHA02741 22 ENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDA---GQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEG 98 (169)
T ss_pred CCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCC---CCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCC
Confidence 34446677799999999986532 22334443332 2466677778888 6999999875433332 11 23
Q ss_pred hhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcc
Q psy9003 374 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 438 (1276)
Q Consensus 374 e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~ 438 (1276)
++..+ -|...++.+++++|+.....++-..+.++. ||||.|...++.++++.|+.
T Consensus 99 ~TpLh------~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~----tpL~~A~~~~~~~iv~~L~~ 153 (169)
T PHA02741 99 DTALH------LAAHRRDHDLAEWLCCQPGIDLHFCNADNK----SPFELAIDNEDVAMMQILRE 153 (169)
T ss_pred CCHHH------HHHHcCCHHHHHHHHhCCCCCCCcCCCCCC----CHHHHHHHCCCHHHHHHHHH
Confidence 33333 344468999999999755566666677788 99999999999999988875
No 140
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.37 E-value=0.0016 Score=77.76 Aligned_cols=133 Identities=17% Similarity=0.199 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCC----CCCC-CCcCCCCCcHHHHHHHHH
Q psy9003 1036 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGT----HPLW-DSRLFNYSEIEVLRFLLS 1110 (1276)
Q Consensus 1036 ~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~----~~~W-~g~~LN~~np~Vr~~Iid 1110 (1276)
-+-|+.+|+++|++||+|+-=+-+--++..... .....+.+.....++. +..| ...-||-.+|+||++|.+
T Consensus 114 ~DpLa~~I~~AHkr~l~v~aWf~~~~~a~~~s~----~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~ 189 (418)
T COG1649 114 YDPLAFVIAEAHKRGLEVHAWFNPYRMAPPTSP----LTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITS 189 (418)
T ss_pred CChHHHHHHHHHhcCCeeeechhhcccCCCCCh----hHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHH
Confidence 367899999999999999877766655543211 1111111111111110 1122 233579999999999999
Q ss_pred HHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCc----cccCC----CCCch---------HHHHHHHHHHHHHhh
Q psy9003 1111 NLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYD----EYFGL----NVDTD---------ALIYLMVANKFLHDK 1173 (1276)
Q Consensus 1111 sl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~----~~~~~----~~d~~---------a~~Fl~el~~~Vr~~ 1173 (1276)
.+.--++.|.|||..||---... -.|..... ..++. ..+.. .-.|++.+...||+.
T Consensus 190 lv~evV~~YdvDGIQfDd~fy~~-------~~~gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VKav 262 (418)
T COG1649 190 LVVEVVRNYDVDGIQFDDYFYYP-------IPFGYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTVKAV 262 (418)
T ss_pred HHHHHHhCCCCCceecceeeccc-------CccccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 99999999999999999533221 01110000 00000 11111 225788899999999
Q ss_pred CCCeEE
Q psy9003 1174 YPEIIT 1179 (1276)
Q Consensus 1174 ~Pdvil 1179 (1276)
+|++++
T Consensus 263 Kp~v~~ 268 (418)
T COG1649 263 KPNVKF 268 (418)
T ss_pred CCCeEE
Confidence 999765
No 141
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.30 E-value=0.066 Score=71.39 Aligned_cols=277 Identities=14% Similarity=0.148 Sum_probs=171.8
Q ss_pred CChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhc--cCCCHHHHHHHhhhhcccccCCC
Q psy9003 447 GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG--LFGTPEQLKYLVDECHKAGLFGT 524 (1276)
Q Consensus 447 ~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~--~~~~~~~~~~~~t~~~~a~~~g~ 524 (1276)
|..+...-+.+.+.+.++.-+....-.+|..+-+ .|.++...-+.+.+.+.. ...+....-.++... +..|.
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k---~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay---~k~G~ 594 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ---SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC---ANAGQ 594 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH---HHCCC
Confidence 4455544555556555554444444444544433 355666555555554432 222222222234433 34677
Q ss_pred HHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHH
Q psy9003 525 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQL 604 (1276)
Q Consensus 525 ~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 604 (1276)
++.+.-+.+.+.+.++..+.......|..+. ..|.++.+..+.+.|.+.|+..+...+-..+..+. ..|.++.+
T Consensus 595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay~---k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~---k~G~~eeA 668 (1060)
T PLN03218 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCS---QKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG---HAGDLDKA 668 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---hCCCHHHH
Confidence 8888888888888776555443333443333 35778888888888888886665444433333333 35778888
Q ss_pred HHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHHHHHHHHHHhhcCCCChHHHhhhhhhhhhcccCCChhHHHHHH
Q psy9003 605 KYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLV 684 (1276)
Q Consensus 605 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1276)
.-+.+.|.+.|.+.+..--..++.++.|+ |.++.+..+++.|.+.|...+......+++++.+ .|.++.+.-++
T Consensus 669 ~~l~~eM~k~G~~pd~~tynsLI~ay~k~---G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k---~G~~eeAlelf 742 (1060)
T PLN03218 669 FEILQDARKQGIKLGTVSYSSLMGACSNA---KNWKKALELYEDIKSIKLRPTVSTMNALITALCE---GNQLPKALEVL 742 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---CCCHHHHHHHH
Confidence 88888888888877766555677777774 6678888888888877655555555556666654 46678888888
Q ss_pred HHHHhhccCCChhHHHhhHHHHhhcccCCCHHHHHHHHHHHHhccCCCCchhhhhhhhhh
Q psy9003 685 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 744 (1276)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1276)
+.|.+.|-.-.......++.++.+ .|.++.++.+.+.|.+.|...++..-..+.+.|
T Consensus 743 ~eM~~~Gi~Pd~~Ty~sLL~a~~k---~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc 799 (1060)
T PLN03218 743 SEMKRLGLCPNTITYSILLVASER---KDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC 799 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 888877654444444455555544 566888888888888888776666555555544
No 142
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=97.29 E-value=0.00042 Score=85.21 Aligned_cols=109 Identities=17% Similarity=0.263 Sum_probs=60.0
Q ss_pred CceEEEEecCC--ccccCccCcHHHHHHhhhhHHHHcCCCCCccceeecccccccccccccceeeccCcccccccccccc
Q psy9003 895 NLKIYESHVGI--CTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAE 972 (1276)
Q Consensus 895 d~vIYElHVr~--ft~~~~~Gtf~gl~ek~LdyLK~LGVna~d~wV~LmP~f~~eew~~~~pi~~l~~~Pi~E~~i~~~~ 972 (1276)
.-+|||-+-.- |-....-=+..-|++. .+-+|++|||. .||-|.|.- -+..+..+
T Consensus 564 SqvIYEgFSNFQ~~~t~~~eytN~~IA~N-a~lFk~wGITs----FemAPQY~S-----------s~D~tFLD------- 620 (809)
T PF02324_consen 564 SQVIYEGFSNFQDFPTTPSEYTNVVIAKN-ADLFKSWGITS----FEMAPQYRS-----------STDGTFLD------- 620 (809)
T ss_dssp T-EEEE---TTB---SSGGGSHHHHHHHT-HHHHHHTTEEE----EE----S-B-------------SSSSHH-------
T ss_pred cchhhccccccccCCCChHHHHHHHHHHh-HHHHHhcCcce----eeeCcceec-----------CCCCcchh-------
Confidence 46999977542 2111222345556654 88999999999 999987751 00011111
Q ss_pred CCCcccCCCccccccccccccccccCCCCCCcccccccccccCCCCCccccccccccCCCCCCHHHHHHHHHHHHHcCCE
Q psy9003 973 SHDQALVGDKTIAFWLMDKEMYTHMSTLSDPSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLY 1052 (1276)
Q Consensus 973 S~~~~~WGYdp~nyf~~d~~~y~~~S~~~Dp~~~~dap~~~yas~s~hkYt~D~~~ID~~~Gt~eEfK~LV~alHk~GI~ 1052 (1276)
| ...-||.-.|-| | . .|+.+ .+||+.++|+..|+++|+.||+
T Consensus 621 S--iiqNGYAFtDRY--D-------------------L--g~s~p-------------tKYGs~~dL~~AikALH~~Giq 662 (809)
T PF02324_consen 621 S--IIQNGYAFTDRY--D-------------------L--GMSKP-------------TKYGSVEDLRNAIKALHAAGIQ 662 (809)
T ss_dssp H--HTT-SSSBS-TT----------------------S--SSSS--------------BTTB-HHHHHHHHHHHHHTT-E
T ss_pred h--HhhcCccccchh--h-------------------h--cCCCC-------------CCCCCHHHHHHHHHHHHHcCcc
Confidence 1 234588877777 1 1 12222 5789999999999999999999
Q ss_pred EEEEEeccccCC
Q psy9003 1053 VLLDVVHSHASK 1064 (1276)
Q Consensus 1053 VILDvV~NHt~~ 1064 (1276)
||-|+|++....
T Consensus 663 viaDwVpdQiYn 674 (809)
T PF02324_consen 663 VIADWVPDQIYN 674 (809)
T ss_dssp EEEEE-TSEE--
T ss_pred hhhhhchHhhhC
Confidence 999999997653
No 143
>PHA02743 Viral ankyrin protein; Provisional
Probab=97.23 E-value=0.00027 Score=73.97 Aligned_cols=130 Identities=11% Similarity=-0.019 Sum_probs=92.9
Q ss_pred hhhcccccCCChhhhh----hhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHH---HHHHHhhhhhcCCCC-Ccchh
Q psy9003 476 DECHKAGLFGTPEQLK----YLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQ---LKYLVDECHKAGLFG-TPEQL 547 (1276)
Q Consensus 476 ~~~~~a~~~~~~e~~~----~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~---~~~lv~~~~~~~~~~-t~~~l 547 (1276)
+..|.|...|.++.|+ +|.+....++.+.. ...|+.|.|+..|+.+. +++|+..++++|..+ .
T Consensus 22 ~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~-----~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~---- 92 (166)
T PHA02743 22 NTFLRICRTGNIYELMEVAPFISGDGHLLHRYDH-----HGRQCTHMVAWYDRANAVMKIELLVNMGADINARELG---- 92 (166)
T ss_pred cHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCC-----CCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCC----
Confidence 4566677778886544 44444555554333 45789999999988665 789999999988543 3
Q ss_pred hhhhhhhhccccCCCHHHHHHHHH-hhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCCh
Q psy9003 548 KYLVDECHKAGLFGTPEQLKYLVD-ECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP 620 (1276)
Q Consensus 548 ~~~~~~~~~~~~~~~~e~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~ 620 (1276)
+.-|-.|.|...|+++.+++|+. .+++++..... ..|.++.|...|+.+.+++|+..++++|.+-+.
T Consensus 93 -~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~-----g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~ 160 (166)
T PHA02743 93 -TGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQ-----HETAYHIAYKMRDRRMMEILRANGAVCDDPLSI 160 (166)
T ss_pred -CCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCC-----CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccC
Confidence 33455566668999999999996 68887732211 255566666889999999999999999877654
No 144
>KOG0507|consensus
Probab=97.22 E-value=0.00041 Score=85.78 Aligned_cols=194 Identities=20% Similarity=0.123 Sum_probs=121.2
Q ss_pred hccccccccCCChhhhHHhhhhhccccCCCChhhHHH-HHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhccccc
Q psy9003 342 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDE 420 (1276)
Q Consensus 342 ~~~~~~a~~~g~ie~~~yLi~~~h~~~~~~~~e~~~~-~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~ 420 (1276)
.|.+|.|+.-|+++|+|+|.+-=| + .|+... .++-.+-|.++|+-|+||.|.--. -++.+.++++. ||
T Consensus 50 fTalhha~Lng~~~is~llle~ea--~----ldl~d~kg~~plhlaaw~g~~e~vkmll~q~-d~~na~~~e~~----tp 118 (854)
T KOG0507|consen 50 FTLLHHAVLNGQNQISKLLLDYEA--L----LDLCDTKGILPLHLAAWNGNLEIVKMLLLQT-DILNAVNIENE----TP 118 (854)
T ss_pred hhHHHHHHhcCchHHHHHHhcchh--h----hhhhhccCcceEEehhhcCcchHHHHHHhcc-cCCCcccccCc----Cc
Confidence 688899999999999999965433 0 111110 123344556799999999998655 56788899999 99
Q ss_pred chhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhh
Q psy9003 421 CHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 500 (1276)
Q Consensus 421 lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~ 500 (1276)
||.|+.+||-|||.||++-..--++ +++.+ +-..+.|-+++ .-+++.-|... +-+++- .+ ++. .+..
T Consensus 119 lhlaaqhgh~dvv~~Ll~~~adp~i-~nns~-~t~ldlA~qfg---r~~Vvq~ll~~--~~~~~~-~~----~~~-~~~~ 185 (854)
T KOG0507|consen 119 LHLAAQHGHLEVVFYLLKKNADPFI-RNNSK-ETVLDLASRFG---RAEVVQMLLQK--KFPVQS-SL----RVG-DIKR 185 (854)
T ss_pred cchhhhhcchHHHHHHHhcCCCccc-cCccc-ccHHHHHHHhh---hhHHHHHHhhh--ccchhh-cc----cCC-CCCC
Confidence 9999999999999999964432221 23333 33345555553 23555555433 111221 11 222 1111
Q ss_pred ccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhh
Q psy9003 501 GLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 573 (1276)
Q Consensus 501 ~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~ 573 (1276)
-.. ..++.|=|..+|+++++..|...+=+||... ..-|.+|.|-.-|-.|.+..|.++|
T Consensus 186 ~~~--------~~~plHlaakngh~~~~~~ll~ag~din~~t------~~gtalheaalcgk~evvr~ll~~g 244 (854)
T KOG0507|consen 186 PFP--------AIYPLHLAAKNGHVECMQALLEAGFDINYTT------EDGTALHEAALCGKAEVVRFLLEIG 244 (854)
T ss_pred CCC--------CcCCcchhhhcchHHHHHHHHhcCCCccccc------ccchhhhhHhhcCcchhhhHHHhhc
Confidence 111 1467788888888888888888777777433 2345566666666667766666655
No 145
>PHA02736 Viral ankyrin protein; Provisional
Probab=97.22 E-value=0.00017 Score=73.84 Aligned_cols=94 Identities=12% Similarity=-0.021 Sum_probs=64.8
Q ss_pred hhhhcccccCCCh---hhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhh-hhhcCCCCCcchhhhh
Q psy9003 475 VDECHKAGLFGTP---EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDE-CHKAGLFGTPEQLKYL 550 (1276)
Q Consensus 475 v~~~~~a~~~~~~---e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~-~~~~~~~~t~~~l~~~ 550 (1276)
.|..|.|...|.. |.+++|+..+.++|.+.. +...|..|.|...|+.+++++|+.. +.++|..+. +.
T Consensus 56 ~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~----~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~-----~g 126 (154)
T PHA02736 56 KQCVHIVSNPDKADPQEKLKLLMEWGADINGKER----VFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNY-----AF 126 (154)
T ss_pred CEEEEeecccCchhHHHHHHHHHHcCCCccccCC----CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccC-----CC
Confidence 4677777777766 457788887777776541 0245777778888888888888763 666664444 45
Q ss_pred hhhhhccccCCCHHHHHHHHHhhhhcc
Q psy9003 551 VDECHKAGLFGTPEQLKYLVDECHKAG 577 (1276)
Q Consensus 551 ~~~~~~~~~~~~~e~~~~l~~~~~~~~ 577 (1276)
-|..+.|...|+.+.+++|...+++.+
T Consensus 127 ~tpL~~A~~~~~~~i~~~Ll~~ga~~~ 153 (154)
T PHA02736 127 KTPYYVACERHDAKMMNILRAKGAQCK 153 (154)
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 555566667888888888887776654
No 146
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=97.21 E-value=0.00026 Score=65.48 Aligned_cols=87 Identities=24% Similarity=0.234 Sum_probs=70.5
Q ss_pred hcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhcc
Q psy9003 478 CHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 557 (1276)
Q Consensus 478 ~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~ 557 (1276)
.|.|..+|+++.+++|++...+++. + -|..+.|+..|++|++|+|++.+.+++..+. +.-|.++.|
T Consensus 1 L~~A~~~~~~~~~~~ll~~~~~~~~-~--------~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~-----~g~t~L~~A 66 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLEKGADINL-G--------NTALHYAAENGNLEIVKLLLENGADINSQDK-----NGNTALHYA 66 (89)
T ss_dssp HHHHHHTTTHHHHHHHHHTTSTTTS-S--------SBHHHHHHHTTTHHHHHHHHHTTTCTT-BST-----TSSBHHHHH
T ss_pred CHHHHHcCCHHHHHHHHHCcCCCCC-C--------CCHHHHHHHcCCHHHHHHHHHhcccccccCC-----CCCCHHHHH
Confidence 3678889999999999997777775 2 2578888899999999999998888875553 566667777
Q ss_pred ccCCCHHHHHHHHHhhhhccC
Q psy9003 558 GLFGTPEQLKYLVDECHKAGL 578 (1276)
Q Consensus 558 ~~~~~~e~~~~l~~~~~~~~~ 578 (1276)
...|+.|.+++|++.+.++|.
T Consensus 67 ~~~~~~~~~~~Ll~~g~~~~~ 87 (89)
T PF12796_consen 67 AENGNLEIVKLLLEHGADVNI 87 (89)
T ss_dssp HHTTHHHHHHHHHHTTT-TTS
T ss_pred HHcCCHHHHHHHHHcCCCCCC
Confidence 799999999999999888774
No 147
>PHA02741 hypothetical protein; Provisional
Probab=97.12 E-value=0.00048 Score=72.09 Aligned_cols=135 Identities=10% Similarity=-0.091 Sum_probs=89.1
Q ss_pred ChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCC---
Q psy9003 410 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT--- 486 (1276)
Q Consensus 410 ~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~--- 486 (1276)
+.++. |+||.|+..|+.++|++|+....+.. ....++..+... .|..|.|...|.
T Consensus 18 ~~~g~----t~Lh~Aa~~g~~~~v~~l~~~~~~~~-------------~ga~in~~d~~g-----~T~Lh~A~~~g~~~~ 75 (169)
T PHA02741 18 NSEGE----NFFHEAARCGCFDIIARFTPFIRGDC-------------HAAALNATDDAG-----QMCIHIAAEKHEAQL 75 (169)
T ss_pred ccCCC----CHHHHHHHcCCHHHHHHHHHHhccch-------------hhhhhhccCCCC-----CcHHHHHHHcCChHH
Confidence 34566 99999999999999998864322110 011222222222 467777777776
Q ss_pred -hhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhh-hhhcCCCCCcchhhhhhhhhhccccCCCHH
Q psy9003 487 -PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDE-CHKAGLFGTPEQLKYLVDECHKAGLFGTPE 564 (1276)
Q Consensus 487 -~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~-~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e 564 (1276)
.|.+++|+.....+|.+.. ....|+.|.|...|..+++++|+.. ..+++..+. +.-|..+.|...|+.+
T Consensus 76 ~~~ii~~Ll~~gadin~~~~----~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~-----~g~tpL~~A~~~~~~~ 146 (169)
T PHA02741 76 AAEIIDHLIELGADINAQEM----LEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNA-----DNKSPFELAIDNEDVA 146 (169)
T ss_pred HHHHHHHHHHcCCCCCCCCc----CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCC-----CCCCHHHHHHHCCCHH
Confidence 4777888877777765431 1346778888888888888888863 666665444 4445556666788888
Q ss_pred HHHHHHHhhhh
Q psy9003 565 QLKYLVDECHK 575 (1276)
Q Consensus 565 ~~~~l~~~~~~ 575 (1276)
-+++|....+.
T Consensus 147 iv~~L~~~~~~ 157 (169)
T PHA02741 147 MMQILREIVAT 157 (169)
T ss_pred HHHHHHHHHHH
Confidence 88888877654
No 148
>KOG0514|consensus
Probab=97.10 E-value=0.00089 Score=77.37 Aligned_cols=152 Identities=12% Similarity=-0.064 Sum_probs=105.3
Q ss_pred cccccCCChHHHHHHHhhhhccCCCCCccccc-hhhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhcccccc
Q psy9003 270 HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLK-YLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 348 (1276)
Q Consensus 270 h~~~~~~~ie~~~yli~e~~~~~~~~~~~~~t-~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a 348 (1276)
|++-.+...+||+.|.|---|+-...|++|.| +-.+++.+.=.+..+++|-.|..- -+||-- --.+.-|..-+|
T Consensus 273 HYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~m---gnVNaK--AsQ~gQTALMLA 347 (452)
T KOG0514|consen 273 HYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKM---GDVNAK--ASQHGQTALMLA 347 (452)
T ss_pred eeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhc---cCcchh--hhhhcchhhhhh
Confidence 55555577888888888888887777888877 344555555567778888777632 333310 001112445567
Q ss_pred ccCCChhhhHHhhhhhccccCCCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccC
Q psy9003 349 GLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG 428 (1276)
Q Consensus 349 ~~~g~ie~~~yLi~~~h~~~~~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~ 428 (1276)
.-+|.+|.||.|..-...+|+...+ - -|-.-+|.-+||-||+|+|.-+=-||-.-||.+|- |.|-.|...|
T Consensus 348 VSHGr~d~vk~LLacgAdVNiQDdD-G----STALMCA~EHGhkEivklLLA~p~cd~sLtD~DgS----TAl~IAleag 418 (452)
T KOG0514|consen 348 VSHGRVDMVKALLACGADVNIQDDD-G----STALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGS----TALSIALEAG 418 (452)
T ss_pred hhcCcHHHHHHHHHccCCCccccCC-c----cHHHhhhhhhChHHHHHHHhccCcccceeecCCCc----hhhhhHHhcC
Confidence 7889999999998766666654332 1 12222334489999999999999999999999998 9999998888
Q ss_pred CHhHHHh
Q psy9003 429 TPEQLKY 435 (1276)
Q Consensus 429 ~~~~~~y 435 (1276)
+.|+--.
T Consensus 419 h~eIa~m 425 (452)
T KOG0514|consen 419 HREIAVM 425 (452)
T ss_pred chHHHHH
Confidence 8877533
No 149
>PLN03077 Protein ECB2; Provisional
Probab=97.05 E-value=0.84 Score=59.67 Aligned_cols=37 Identities=16% Similarity=0.127 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCchhhhHHHHhhhccc
Q psy9003 161 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 197 (1276)
Q Consensus 161 ygtp~~l~~~vd~~h~~~i~~~~~~~~~~~~~~~~~~ 197 (1276)
-|.+++-..+.+..-+.|+..+....-.|+..|.+..
T Consensus 64 ~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~ 100 (857)
T PLN03077 64 HGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKR 100 (857)
T ss_pred CCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCC
Confidence 4556666667777777776654444455666665543
No 150
>PHA02884 ankyrin repeat protein; Provisional
Probab=96.86 E-value=0.0013 Score=75.73 Aligned_cols=123 Identities=9% Similarity=-0.060 Sum_probs=84.5
Q ss_pred hhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCC-CChhhhhhhhhhh
Q psy9003 514 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLF-GTPEQLKYLVDEC 592 (1276)
Q Consensus 514 t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~-~~~~~~~~~~~~~ 592 (1276)
+..+.|..+|++|++++|.+.++++|...+. .-.+..|..|.|...|++|.+++|++.++++|.. .... .|..
T Consensus 35 ~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~-sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g-----~TpL 108 (300)
T PHA02884 35 NILYSSIKFHYTDIIDAILKLGADPEAPFPL-SENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAK-----ITPL 108 (300)
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCccccCcc-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCC-----CCHH
Confidence 3455566778999999999999988753210 1125567777888999999999999999998842 2111 4555
Q ss_pred cccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHHHHHHH
Q psy9003 593 HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 647 (1276)
Q Consensus 593 ~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (1276)
+-|...|.+|.+++|++.++++|.+-+.- .++++.|...+..+.+..+.|
T Consensus 109 h~Aa~~~~~eivklLL~~GAdin~kd~~G-----~TpL~~A~~~~~~~~~~~~~~ 158 (300)
T PHA02884 109 YISVLHGCLKCLEILLSYGADINIQTNDM-----VTPIELALMICNNFLAFMICD 158 (300)
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCCCCCCC-----CCHHHHHHHhCChhHHHHhcC
Confidence 66668899999999999999998754333 344444444455555544443
No 151
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=96.75 E-value=0.00058 Score=58.40 Aligned_cols=48 Identities=21% Similarity=0.153 Sum_probs=35.0
Q ss_pred ccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhc
Q psy9003 385 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLV 437 (1276)
Q Consensus 385 ~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli 437 (1276)
.|...|+.|++++|++. .+++-..+.++. ||||.|+..|+.+++++||
T Consensus 7 ~A~~~g~~~~~~~Ll~~-~~din~~d~~g~----t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 7 WAARSGNLEIVKLLLEH-GADINAQDEDGR----TPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp HHHHTT-HHHHHHHHHT-TSGTT-B-TTS------HHHHHHHTT-HHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHC-CCCCCCCCCCCC----CHHHHHHHccCHHHHHHHC
Confidence 34457889999999977 567666688888 9999999999999999986
No 152
>KOG0505|consensus
Probab=96.72 E-value=0.0018 Score=77.95 Aligned_cols=80 Identities=20% Similarity=0.235 Sum_probs=51.8
Q ss_pred CChHHHHHHHhhhhccCCCCCccccchhhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhccccccccCCChh
Q psy9003 276 GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPE 355 (1276)
Q Consensus 276 ~~ie~~~yli~e~~~~~~~~~~~~~t~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~ie 355 (1276)
+..|-|..|+.-- -+|...++.|+|.+ |++......++|+||++...-+|-++. ...|+.|-|.--||++
T Consensus 51 ~d~~ev~~ll~~g-a~~~~~n~DglTal----hq~~id~~~e~v~~l~e~ga~Vn~~d~-----e~wtPlhaaascg~~~ 120 (527)
T KOG0505|consen 51 GDLEEVRKLLNRG-ASPNLCNVDGLTAL----HQACIDDNLEMVKFLVENGANVNAQDN-----EGWTPLHAAASCGYLN 120 (527)
T ss_pred ccHHHHHHHhccC-CCccccCCccchhH----HHHHhcccHHHHHHHHHhcCCcccccc-----ccCCcchhhcccccHH
Confidence 4444444444432 33344455555555 566668889999999987654443332 3467788888889999
Q ss_pred hhHHhhhhhc
Q psy9003 356 QLKYLVDECH 365 (1276)
Q Consensus 356 ~~~yLi~~~h 365 (1276)
|++|||+...
T Consensus 121 i~~~li~~gA 130 (527)
T KOG0505|consen 121 IVEYLIQHGA 130 (527)
T ss_pred HHHHHHHhhh
Confidence 9999988875
No 153
>PLN03077 Protein ECB2; Provisional
Probab=96.68 E-value=3.5 Score=53.98 Aligned_cols=119 Identities=13% Similarity=0.137 Sum_probs=82.4
Q ss_pred cCCCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHHHHHHHHHH-hhcCCCChHHHhhhhhhhhhcccCC
Q psy9003 597 LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH-KAGLFGTPEQLKYLVDECHKAGLFG 675 (1276)
Q Consensus 597 ~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (1276)
.+|..+.+.-+.+.|.+.|.+-+..--.-++.+|.++ |.++++..+++.|. +.|-.-+.+.-.-+++.+.++|+
T Consensus 566 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~---g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~-- 640 (857)
T PLN03077 566 AHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRS---GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK-- 640 (857)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhc---ChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC--
Confidence 6788888888899888888776655434567777775 56888888888888 44545555666777788877765
Q ss_pred ChhHHHHHHHHHHhhccCCChhHHHhhHHHHhhcccCCCHHHHHHHHHHHHh
Q psy9003 676 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHK 727 (1276)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (1276)
++.+.-+++.|.. -........|+.+|. .|+.+|..+...+++.|
T Consensus 641 -~~eA~~~~~~m~~---~pd~~~~~aLl~ac~---~~~~~e~~e~~a~~l~~ 685 (857)
T PLN03077 641 -LTEAYNFINKMPI---TPDPAVWGALLNACR---IHRHVELGELAAQHIFE 685 (857)
T ss_pred -HHHHHHHHHHCCC---CCCHHHHHHHHHHHH---HcCChHHHHHHHHHHHh
Confidence 5777777777631 122334556777763 47888887777666655
No 154
>PHA02884 ankyrin repeat protein; Provisional
Probab=96.66 E-value=0.0021 Score=74.10 Aligned_cols=123 Identities=9% Similarity=-0.096 Sum_probs=88.7
Q ss_pred hhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCC-CCCcchhhhhhhhh
Q psy9003 476 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL-FGTPEQLKYLVDEC 554 (1276)
Q Consensus 476 ~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~-~~t~~~l~~~~~~~ 554 (1276)
+..|.|..+|..|.+++|.+.++++|...+.+ -+...|+.|.|...|++|++++|++.++++|. .+. +..|-.
T Consensus 35 ~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~s-d~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~-----~g~TpL 108 (300)
T PHA02884 35 NILYSSIKFHYTDIIDAILKLGADPEAPFPLS-ENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEE-----AKITPL 108 (300)
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCccccCccc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCC-----CCCCHH
Confidence 44566778899999999999999998753200 11458999999999999999999999999985 333 345666
Q ss_pred hccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHh
Q psy9003 555 HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 609 (1276)
Q Consensus 555 ~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ 609 (1276)
+.|...|.+|.+++|.+.++++|....+- .|+.+-|...++.+.+.++.|
T Consensus 109 h~Aa~~~~~eivklLL~~GAdin~kd~~G-----~TpL~~A~~~~~~~~~~~~~~ 158 (300)
T PHA02884 109 YISVLHGCLKCLEILLSYGADINIQTNDM-----VTPIELALMICNNFLAFMICD 158 (300)
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCCCCCCC-----CCHHHHHHHhCChhHHHHhcC
Confidence 77779999999999999999999332211 233333334455555555543
No 155
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=96.63 E-value=0.002 Score=60.67 Aligned_cols=118 Identities=19% Similarity=0.092 Sum_probs=71.2
Q ss_pred hhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhccccccccCCChhhhHHhhhhhccccCCCChhhHHHHHhhhc
Q psy9003 305 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 384 (1276)
Q Consensus 305 ~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~ie~~~yLi~~~h~~~~~~~~e~~~~~~~~~~ 384 (1276)
|+.+.|...|+++++++|++..-..+.... ...+..+.|+..+.++++.+|+.....++..+.. ..+-.+
T Consensus 9 t~l~~a~~~~~~~~i~~li~~~~~~~~~~~-----~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-----~~~~l~ 78 (126)
T cd00204 9 TPLHLAASNGHLEVVKLLLENGADVNAKDN-----DGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKD-----GNTPLH 78 (126)
T ss_pred CHHHHHHHcCcHHHHHHHHHcCCCCCccCC-----CCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCC-----CCCHHH
Confidence 444666667888888888877654321111 1224455666677788888888766433321111 112333
Q ss_pred ccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhc
Q psy9003 385 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLV 437 (1276)
Q Consensus 385 ~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli 437 (1276)
.|+..++.+++++|+...- +....+..+. |++|.|...++.+++++|+
T Consensus 79 ~a~~~~~~~~~~~L~~~~~-~~~~~~~~~~----~~l~~~~~~~~~~~~~~Ll 126 (126)
T cd00204 79 LAARNGNLDVVKLLLKHGA-DVNARDKDGR----TPLHLAAKNGHLEVVKLLL 126 (126)
T ss_pred HHHHcCcHHHHHHHHHcCC-CCcccCCCCC----CHHHHHHhcCCHHHHHHhC
Confidence 3444678888888887541 1122234444 8999999888888888875
No 156
>KOG0514|consensus
Probab=96.53 E-value=0.0061 Score=70.74 Aligned_cols=145 Identities=16% Similarity=0.052 Sum_probs=88.7
Q ss_pred ChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhh
Q psy9003 372 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQ 451 (1276)
Q Consensus 372 ~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~ 451 (1276)
++|+|+-.+.... +-++.+|.|.||.|- .+|. |.||+|..+.+-+||+-|++.+-|..-+-+.-.
T Consensus 238 ~pe~V~~~l~~f~----als~~lL~yvVNlaD-------sNGN----TALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAG 302 (452)
T KOG0514|consen 238 DPEQVEDYLAYFE----ALSPPLLEYVVNLAD-------SNGN----TALHYAVSHANFDVVSILLDSGVCDVDQQNRAG 302 (452)
T ss_pred CHHHHHHHHHHHH----hcChHHHHHHhhhhc-------CCCC----eeeeeeecccchHHHHHHhccCccccccccccc
Confidence 4566655444333 358999999999984 5666 999999999999999999999999988776544
Q ss_pred HHHHH-HHHhHhccCCChhhHHHh-----h---------hhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhh
Q psy9003 452 LKYLV-DECHKAGLFGTPEQLKYL-----V---------DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 516 (1276)
Q Consensus 452 l~~l~-~~~~~~~~~~~~~~~~~~-----v---------~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~ 516 (1276)
-+-.+ ..+....-....++|+-| | |..--|..||-++-+|.|..-.+++|+++.+ .-|.+
T Consensus 303 YtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdD-----GSTAL 377 (452)
T KOG0514|consen 303 YTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDD-----GSTAL 377 (452)
T ss_pred ccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCC-----ccHHH
Confidence 22221 111111122223444444 1 3333344566666666666666666665531 12334
Q ss_pred cccccCCCHHHHHHHHhhhh
Q psy9003 517 HKAGLFGTPEQLKYLVDECH 536 (1276)
Q Consensus 517 ~~a~~~g~~e~~~~lv~~~~ 536 (1276)
-=|++||+.|++|+|.-.=.
T Consensus 378 MCA~EHGhkEivklLLA~p~ 397 (452)
T KOG0514|consen 378 MCAAEHGHKEIVKLLLAVPS 397 (452)
T ss_pred hhhhhhChHHHHHHHhccCc
Confidence 44556666666666654433
No 157
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=96.42 E-value=0.0063 Score=71.36 Aligned_cols=93 Identities=23% Similarity=0.369 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHcCCEEEEEEeccccCCc-ccCCC--cCC-CCCCCcccccCCCCCC----CCCCC--cCCCCCcHHHHHH
Q psy9003 1038 QLKYLVDECHKAGLYVLLDVVHSHASKN-VLDGL--NEF-DGTQACFFHDGPRGTH----PLWDS--RLFNYSEIEVLRF 1107 (1276)
Q Consensus 1038 EfK~LV~alHk~GI~VILDvV~NHt~~~-~~~~~--~~f-~g~~~~Yy~~~~~g~~----~~W~g--~~LN~~np~Vr~~ 1107 (1276)
+.++||+++|++|++|++=+.+- ...+ ..... ..+ .+....||..+.+|.. ..|.+ .-+|+.||++|++
T Consensus 86 dp~~mi~~Lh~~G~kv~l~v~P~-i~~~~~~~~~~~~~~~~~~~~g~~vk~~~G~~~~~~~~W~g~~~~~Dftnp~a~~W 164 (340)
T cd06597 86 NPKGMIDELHEQGVKVLLWQIPI-IKLRPHPHGQADNDEDYAVAQNYLVQRGVGKPYRIPGQWFPDSLMLDFTNPEAAQW 164 (340)
T ss_pred CHHHHHHHHHHCCCEEEEEecCc-cccccccccccchhHHHHHHCCEEEEcCCCCccccccccCCCceeecCCCHHHHHH
Confidence 67899999999999999855542 2111 00000 001 1222345544444431 24543 5689999999999
Q ss_pred HHHHHHHHHHhCCCcEEccCCccc
Q psy9003 1108 LLSNLRWYLDEYQFDGFRFDGVTS 1131 (1276)
Q Consensus 1108 Iidsl~~Wv~eygVDGFRfD~a~~ 1131 (1276)
..+.++.+++++|||||.+|+...
T Consensus 165 w~~~~~~~~~~~Gidg~w~D~~E~ 188 (340)
T cd06597 165 WMEKRRYLVDELGIDGFKTDGGEH 188 (340)
T ss_pred HHHHHHHHHHhcCCcEEEecCCCc
Confidence 999999999889999999997653
No 158
>PHA02736 Viral ankyrin protein; Provisional
Probab=96.28 E-value=0.0026 Score=65.20 Aligned_cols=127 Identities=11% Similarity=-0.039 Sum_probs=83.0
Q ss_pred hhhhcccccCCChhhhhhhhhhhhhhccCCCHHHH----HHHhhhhcccccCCCH---HHHHHHHhhhhhcCCCC-Ccch
Q psy9003 475 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQL----KYLVDECHKAGLFGTP---EQLKYLVDECHKAGLFG-TPEQ 546 (1276)
Q Consensus 475 v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~----~~~~t~~~~a~~~g~~---e~~~~lv~~~~~~~~~~-t~~~ 546 (1276)
.|..|.|...|+++.|-...+ ..+. ....++ +...|+.|.|...|++ |.+++|+..++++|..+ .
T Consensus 18 ~tpLh~A~~~g~~~~l~~~~~--~~~~--~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~--- 90 (154)
T PHA02736 18 ENILHYLCRNGGVTDLLAFKN--AISD--ENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERV--- 90 (154)
T ss_pred CCHHHHHHHhCCHHHHHHHHH--Hhcc--hhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCC---
Confidence 577888888887644322111 1111 111111 1237889999999987 56899999998888533 3
Q ss_pred hhhhhhhhhccccCCCHHHHHHHHHh-hhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhcc
Q psy9003 547 LKYLVDECHKAGLFGTPEQLKYLVDE-CHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 615 (1276)
Q Consensus 547 l~~~~~~~~~~~~~~~~e~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~ 615 (1276)
+.-|..|.|...|+.|.+++|+.. +.++|.... +..|..+-|...|+.+.+++|+..+++.+
T Consensus 91 --~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~-----~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~ 153 (154)
T PHA02736 91 --FGNTPLHIAVYTQNYELATWLCNQPGVNMEILNY-----AFKTPYYVACERHDAKMMNILRAKGAQCK 153 (154)
T ss_pred --CCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccC-----CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 334445556688999999999974 777773322 22455555668899999999998887764
No 159
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=96.23 E-value=0.028 Score=67.33 Aligned_cols=126 Identities=17% Similarity=0.158 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCC-CCCCcCCCCCcHHHHHHHHHHHHHH
Q psy9003 1037 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHP-LWDSRLFNYSEIEVLRFLLSNLRWY 1115 (1276)
Q Consensus 1037 eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~-~W~g~~LN~~np~Vr~~Iidsl~~W 1115 (1276)
..|+.|++.+|++||+.=|=+-+--++.++. .-...|.|....+..... ......||+.+|+|++++.+.+...
T Consensus 104 ~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~~S~-----l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~l 178 (394)
T PF02065_consen 104 NGLKPLADYIHSLGMKFGLWFEPEMVSPDSD-----LYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRL 178 (394)
T ss_dssp THHHHHHHHHHHTT-EEEEEEETTEEESSSC-----HCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHCCCeEEEEeccccccchhH-----HHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHH
Confidence 4699999999999999999887765555431 112234454332221111 1111248999999999999999999
Q ss_pred HHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHH---HHHHHHHHHhhCCCeEEEEE
Q psy9003 1116 LDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIY---LMVANKFLHDKYPEIITIAE 1182 (1276)
Q Consensus 1116 v~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~F---l~el~~~Vr~~~PdvilIAE 1182 (1276)
++++|||.|.+|....+... .+. ..+.....+ +.++.+.+++.+|++++-.=
T Consensus 179 l~~~gidYiK~D~n~~~~~~-------~~~--------~~~~~~~~~~~~~y~l~~~L~~~~P~v~iE~C 233 (394)
T PF02065_consen 179 LREWGIDYIKWDFNRDITEA-------GSP--------SLPEGYHRYVLGLYRLLDRLRARFPDVLIENC 233 (394)
T ss_dssp HHHTT-SEEEEE-TS-TTS--------SST--------TS-GHHHHHHHHHHHHHHHHHHHTTTSEEEE-
T ss_pred HHhcCCCEEEeccccCCCCC-------CCC--------CchHHHHHHHHHHHHHHHHHHHhCCCcEEEec
Confidence 99999999999986655210 000 000111112 23466788899999877543
No 160
>KOG0502|consensus
Probab=96.18 E-value=0.0048 Score=67.61 Aligned_cols=97 Identities=11% Similarity=-0.029 Sum_probs=68.5
Q ss_pred CCCcccchhhhhccccccccCCChhhhHHhhhhhcccc-CCCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCC
Q psy9003 331 LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG-LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG 409 (1276)
Q Consensus 331 ~~~~~~~~~~~~~~~~~a~~~g~ie~~~yLi~~~h~~~-~~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~ 409 (1276)
||-+|+ ...|+.-||.+.|||++|.+|.+-..+-. +..--|.-.-+.+. -|-+|||++|.+----.|+ -
T Consensus 153 VN~~De---~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~------ggytdiV~lLL~r~vdVNv-y 222 (296)
T KOG0502|consen 153 VNACDE---FGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATR------GGYTDIVELLLTREVDVNV-Y 222 (296)
T ss_pred ccCccc---cCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhc------CChHHHHHHHHhcCCCcce-e
Confidence 555553 33677889999999999999988776332 22222222223333 4889999999864332332 2
Q ss_pred ChhhhhcccccchhccccCCHhHHHhhccccc
Q psy9003 410 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 441 (1276)
Q Consensus 410 ~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~ 441 (1276)
+.+|. |||-+|++-++.+.||.||+.+.
T Consensus 223 DwNGg----TpLlyAvrgnhvkcve~Ll~sGA 250 (296)
T KOG0502|consen 223 DWNGG----TPLLYAVRGNHVKCVESLLNSGA 250 (296)
T ss_pred ccCCC----ceeeeeecCChHHHHHHHHhcCC
Confidence 67888 99999999999999999998763
No 161
>KOG4369|consensus
Probab=96.15 E-value=0.019 Score=73.60 Aligned_cols=274 Identities=15% Similarity=0.012 Sum_probs=151.2
Q ss_pred CccccchhhhhhcccccCCCHHHHHHHhhhhh----ccC-------CCCc-------ccchhhhh-----------cccc
Q psy9003 296 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECH----KAG-------LFGT-------PEQLKYLV-----------DECH 346 (1276)
Q Consensus 296 ~~~~~t~~~~~~~~a~~~gsi~~l~~Lv~~~~----~~~-------~~~~-------~~~~~~~~-----------~~~~ 346 (1276)
++..+++..|++|-|...|+-|.+-+||...- .++ |+.| ++|+++-. |..+
T Consensus 750 d~~Te~n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lS 829 (2131)
T KOG4369|consen 750 DPLTEPNIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLS 829 (2131)
T ss_pred ccccCccccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEE
Confidence 55677888899999999999999999996633 222 1111 12222110 2333
Q ss_pred ccccCCChhhhHHhhhhhccccCCCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccc
Q psy9003 347 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 426 (1276)
Q Consensus 347 ~a~~~g~ie~~~yLi~~~h~~~~~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~ 426 (1276)
.||--|.-|+|-+|++..--...-+-.|..--....+ -|.++||+.|..-.-+++..+.. +..+.||..|+.
T Consensus 830 lacsggr~~vvelLl~~gankehrnvsDytPlsla~S-----ggy~~iI~~llS~GseInSrtgS---klgisPLmlatm 901 (2131)
T KOG4369|consen 830 LACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARS-----GGYTKIIHALLSSGSEINSRTGS---KLGISPLMLATM 901 (2131)
T ss_pred EecCCCcchHHHHHHHhhccccccchhhcCchhhhcC-----cchHHHHHHHhhccccccccccc---ccCcchhhhhhh
Confidence 4455555555555544332222111001000011111 25566666666555555533322 223356666665
Q ss_pred cCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCC-ChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCC-
Q psy9003 427 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG-TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG- 504 (1276)
Q Consensus 427 ~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~-~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~- 504 (1276)
+||-+.++.|+ +-+-+||-+. |.- =|..+-|+-+|-.|-+++|.+. .+|+.-
T Consensus 902 ngh~~at~~ll-------------------~~gsdiNaqIeTNr-----nTaltla~fqgr~evv~lLLa~--~anvehR 955 (2131)
T KOG4369|consen 902 NGHQAATLSLL-------------------QPGSDINAQIETNR-----NTALTLALFQGRPEVVFLLLAA--QANVEHR 955 (2131)
T ss_pred ccccHHHHHHh-------------------cccchhcccccccc-----ccceeeccccCcchHHHHHHHH--hhhhhhh
Confidence 55555555444 3333443100 000 2556677778877777776542 122211
Q ss_pred CHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcC---CCCCcc-hh--------------------------hhhhhhh
Q psy9003 505 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG---LFGTPE-QL--------------------------KYLVDEC 554 (1276)
Q Consensus 505 ~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~---~~~t~~-~l--------------------------~~~~~~~ 554 (1276)
. |..+|.+-++.-.|-+|+=.+|++++++-| |-+|.+ .| +..||-.
T Consensus 956 a----ktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~L 1031 (2131)
T KOG4369|consen 956 A----KTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVL 1031 (2131)
T ss_pred c----ccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCccceecccCCCCccc
Confidence 0 012566666667777888888888888877 555544 11 2345555
Q ss_pred hccccCCCHHHHHHHHHhhhhcc--CCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhc
Q psy9003 555 HKAGLFGTPEQLKYLVDECHKAG--LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 614 (1276)
Q Consensus 555 ~~~~~~~~~e~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~ 614 (1276)
--|+.-|-+-.+-.||+..+++. .|+|.. |+ --|.++|+.+.||+.|--+--+
T Consensus 1032 wla~~Gg~lss~~il~~~~ad~d~qdnr~~S-----~~--maafRKgh~~iVk~mv~~atqf 1086 (2131)
T KOG4369|consen 1032 WLASAGGALSSCPILVSSVADADQQDNRTNS-----RT--MAAFRKGHFAIVKKMVPPATQF 1086 (2131)
T ss_pred chhccCCccccchHHhhcccChhhhhccccc-----cc--HHHHHhchhheeccccCchhcC
Confidence 55666777788888888888887 777765 33 2344788899999888765543
No 162
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=96.10 E-value=0.0094 Score=68.72 Aligned_cols=87 Identities=23% Similarity=0.481 Sum_probs=62.6
Q ss_pred HHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCC-CCCCcccccCCCCC----CCCCCC--cCCCCCcHHHHHHHHHH
Q psy9003 1039 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFD-GTQACFFHDGPRGT----HPLWDS--RLFNYSEIEVLRFLLSN 1111 (1276)
Q Consensus 1039 fK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~-g~~~~Yy~~~~~g~----~~~W~g--~~LN~~np~Vr~~Iids 1111 (1276)
.++||+++|++|+++++=+-+ +...+.. .|. +....||-.+++|. ...|.+ .-+|+.||++|+++.+.
T Consensus 72 p~~mi~~l~~~G~k~~l~i~P-~i~~~s~----~~~e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~ 146 (303)
T cd06592 72 PKGMIDQLHDLGFRVTLWVHP-FINTDSE----NFREAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSR 146 (303)
T ss_pred HHHHHHHHHHCCCeEEEEECC-eeCCCCH----HHHhhhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHH
Confidence 689999999999999998876 3333321 122 22334554444431 123443 46899999999999999
Q ss_pred HHHHHHhCCCcEEccCCcc
Q psy9003 1112 LRWYLDEYQFDGFRFDGVT 1130 (1276)
Q Consensus 1112 l~~Wv~eygVDGFRfD~a~ 1130 (1276)
++..+.++|||||-+|...
T Consensus 147 ~~~~~~~~Gvdg~w~D~~E 165 (303)
T cd06592 147 LKSLQEKYGIDSFKFDAGE 165 (303)
T ss_pred HHHHHHHhCCcEEEeCCCC
Confidence 9999988999999999755
No 163
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=96.10 E-value=0.031 Score=64.32 Aligned_cols=89 Identities=16% Similarity=0.289 Sum_probs=62.6
Q ss_pred HHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCC-CCCCcccccCCCCCC---CCCC--CcCCCCCcHHHHHHHHHHH
Q psy9003 1039 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFD-GTQACFFHDGPRGTH---PLWD--SRLFNYSEIEVLRFLLSNL 1112 (1276)
Q Consensus 1039 fK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~-g~~~~Yy~~~~~g~~---~~W~--g~~LN~~np~Vr~~Iidsl 1112 (1276)
.++||+++|++|++|++-+.+ +...+.+ .|. +....||..++++.. ..|. +.-+|+.||++|+++.+.+
T Consensus 68 ~~~~i~~l~~~G~~~~~~~~P-~i~~~~~----~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~ 142 (308)
T cd06593 68 PEGMLSRLKEKGFKVCLWINP-YIAQKSP----LFKEAAEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKL 142 (308)
T ss_pred HHHHHHHHHHCCCeEEEEecC-CCCCCch----hHHHHHHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHH
Confidence 579999999999999998875 4444321 111 122344444333332 2333 3568999999999999999
Q ss_pred HHHHHhCCCcEEccCCccccc
Q psy9003 1113 RWYLDEYQFDGFRFDGVTSML 1133 (1276)
Q Consensus 1113 ~~Wv~eygVDGFRfD~a~~L~ 1133 (1276)
+.+++ +|||||-+|....+.
T Consensus 143 ~~~~~-~Gid~~~~D~~e~~p 162 (308)
T cd06593 143 KPLLD-MGVDCFKTDFGERIP 162 (308)
T ss_pred HHHHH-hCCcEEecCCCCCCC
Confidence 98887 799999999876553
No 164
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=96.02 E-value=0.009 Score=69.42 Aligned_cols=91 Identities=12% Similarity=0.172 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCC-CCCCCcccccCCCCC---CCCCC--CcCCCCCcHHHHHHHHHH
Q psy9003 1038 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-DGTQACFFHDGPRGT---HPLWD--SRLFNYSEIEVLRFLLSN 1111 (1276)
Q Consensus 1038 EfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f-~g~~~~Yy~~~~~g~---~~~W~--g~~LN~~np~Vr~~Iids 1111 (1276)
+.++||+++|++|++|++-+. .+...+... .| .+....||..+++|. ...|. +.-+|+.||++|++..+.
T Consensus 72 dp~~mi~~Lh~~G~~~~~~i~-P~v~~~~~~---~y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~ 147 (317)
T cd06594 72 GLDELIEELKARGIRVLTYIN-PYLADDGPL---YYEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQV 147 (317)
T ss_pred CHHHHHHHHHHCCCEEEEEec-CceecCCch---hHHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHH
Confidence 467999999999999999554 444333211 01 122234555444443 23343 456899999999999999
Q ss_pred HHHHHHhCCCcEEccCCcccc
Q psy9003 1112 LRWYLDEYQFDGFRFDGVTSM 1132 (1276)
Q Consensus 1112 l~~Wv~eygVDGFRfD~a~~L 1132 (1276)
++..+.++|||||-+|+-..+
T Consensus 148 ~~~~~~~~Gvdg~w~D~~E~~ 168 (317)
T cd06594 148 IKEMLLDLGLSGWMADFGEYL 168 (317)
T ss_pred HHHHhhhcCCcEEEecCCCCC
Confidence 999877799999999976544
No 165
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=96.01 E-value=0.0044 Score=68.87 Aligned_cols=37 Identities=38% Similarity=0.508 Sum_probs=33.9
Q ss_pred ChHHHHHHHHHHHHhcCc-----------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 143 GTPEQLKYLVDECHKAGL-----------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 143 ~y~e~a~~li~y~~~~~y-----------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
+++-|.++| +|+|++|+ |||.+||+.||++||+.||+
T Consensus 2 d~~gi~~kL-dyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~ 67 (316)
T PF00128_consen 2 DFRGIIDKL-DYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIK 67 (316)
T ss_dssp SHHHHHHTH-HHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHhh-HHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccce
Confidence 467788885 89999998 99999999999999999999
No 166
>smart00642 Aamy Alpha-amylase domain.
Probab=95.99 E-value=0.0079 Score=63.77 Aligned_cols=37 Identities=32% Similarity=0.428 Sum_probs=32.9
Q ss_pred ChHHHHHHHHHHHHhcCc--------------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 143 GTPEQLKYLVDECHKAGL--------------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 143 ~y~e~a~~li~y~~~~~y--------------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
+++.|+++|- |++++|+ |||++||+.||++||++||+
T Consensus 17 ~~~gi~~~l~-yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~ 85 (166)
T smart00642 17 DLQGIIEKLD-YLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIK 85 (166)
T ss_pred CHHHHHHHHH-HHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCE
Confidence 5799999985 9999977 89999999999999999988
No 167
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=95.60 E-value=0.012 Score=56.07 Aligned_cols=39 Identities=31% Similarity=0.595 Sum_probs=34.0
Q ss_pred eeEeecCCCeEEEEEcCc-----EEEEEeCCCCCCccccccccC
Q psy9003 1237 YVSTKHEGDKVIIFERAG-----LLFAFNFNGTQSFTDYRGKSN 1275 (1276)
Q Consensus 1237 ~~l~nHD~~RVlsf~R~~-----ll~v~N~~~~~s~~~y~~~~~ 1275 (1276)
|+...++.++|++|.|.+ ++||+||++.+.+.+|++|+|
T Consensus 1 Wi~~~d~~~~v~af~R~~~~~~~~lvv~Nf~~~~~~~~~~~~~p 44 (95)
T PF02806_consen 1 WIDHDDNENNVIAFERKDKGDDRVLVVFNFSPEAVYEDYRIGVP 44 (95)
T ss_dssp EEEEEEESSSEEEEEETTTETTEEEEEEESSSS-EEEEEEECSS
T ss_pred CcccccCCCCEEEEEEcCCCCCEEEEEEECCCcccceeEEeCCC
Confidence 466788899999999954 999999999989999999997
No 168
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=95.42 E-value=0.079 Score=66.02 Aligned_cols=92 Identities=20% Similarity=0.398 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEE-EEeccccCCcccCCCcCCCCCCCccc--ccCCCCC------CCCCCC--cCCCCCcHH
Q psy9003 1035 TPEQLKYLVDECHKAGLYVLL-DVVHSHASKNVLDGLNEFDGTQACFF--HDGPRGT------HPLWDS--RLFNYSEIE 1103 (1276)
Q Consensus 1035 t~eEfK~LV~alHk~GI~VIL-DvV~NHt~~~~~~~~~~f~g~~~~Yy--~~~~~g~------~~~W~g--~~LN~~np~ 1103 (1276)
..+-.|.+|+++|+.||++|. .+++. ...+ ..-+|..+.|+ ..+.... ...|.. --+|..||.
T Consensus 168 ~~~~Vk~yI~~ah~~Gmkam~Ynmiya-a~~~-----~~~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~ 241 (559)
T PF13199_consen 168 STSTVKDYINAAHKYGMKAMAYNMIYA-ANNN-----YEEDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPE 241 (559)
T ss_dssp EHHHHHHHHHHHHHTT-EEEEEEESSE-EETT-------S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HH
T ss_pred hHHHHHHHHHHHHHcCcceehhHhhhc-cccC-----cccccCCchhhhhhccCCCccceeecCcccccceEEecCCCHH
Confidence 368899999999999999875 33332 1111 01133334333 2221110 123543 356899999
Q ss_pred HHHHHHHHHHHHHHhCCCcEEccCCcccc
Q psy9003 1104 VLRFLLSNLRWYLDEYQFDGFRFDGVTSM 1132 (1276)
Q Consensus 1104 Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L 1132 (1276)
.|+||++.+...++++|+|||.+|..+..
T Consensus 242 WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~ 270 (559)
T PF13199_consen 242 WQNYIINQMNKAIQNFGFDGWHLDQLGNR 270 (559)
T ss_dssp HHHHHHHHHHHHHHHHT--EEEEE-S--E
T ss_pred HHHHHHHHHHHHHHccCCceEeeeccCCC
Confidence 99999999999999999999999987743
No 169
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=95.40 E-value=0.03 Score=65.76 Aligned_cols=90 Identities=18% Similarity=0.282 Sum_probs=60.3
Q ss_pred HHHHHHHHHcCCEEEEEEeccccCCcc-cCCCcCC-CCCCCcccccCCCCCC---CCCCC--cCCCCCcHHHHHHHHHHH
Q psy9003 1040 KYLVDECHKAGLYVLLDVVHSHASKNV-LDGLNEF-DGTQACFFHDGPRGTH---PLWDS--RLFNYSEIEVLRFLLSNL 1112 (1276)
Q Consensus 1040 K~LV~alHk~GI~VILDvV~NHt~~~~-~~~~~~f-~g~~~~Yy~~~~~g~~---~~W~g--~~LN~~np~Vr~~Iidsl 1112 (1276)
++||+++|++|++|++=+.+. ...+. ......| .+....||..+.+|.. ..|.+ .-+|+.||+++++..+.+
T Consensus 69 ~~mi~~L~~~G~k~~~~i~P~-v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~ 147 (339)
T cd06602 69 PEFVDELHANGQHYVPILDPA-ISANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEI 147 (339)
T ss_pred HHHHHHHHHCCCEEEEEEeCc-cccCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHH
Confidence 799999999999999976533 33221 0000111 1222345544444432 33443 457999999999999999
Q ss_pred HHHHHhCCCcEEccCCcc
Q psy9003 1113 RWYLDEYQFDGFRFDGVT 1130 (1276)
Q Consensus 1113 ~~Wv~eygVDGFRfD~a~ 1130 (1276)
+..++++|||||-+|...
T Consensus 148 ~~~~~~~Gvdg~w~D~~E 165 (339)
T cd06602 148 KDFHDQVPFDGLWIDMNE 165 (339)
T ss_pred HHHHhcCCCcEEEecCCC
Confidence 999998999999999644
No 170
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=95.37 E-value=0.025 Score=65.78 Aligned_cols=90 Identities=18% Similarity=0.244 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCC-CCCCCcccccCCCCC---CCCCCC--cCCCCCcHHHHHHHHHH
Q psy9003 1038 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-DGTQACFFHDGPRGT---HPLWDS--RLFNYSEIEVLRFLLSN 1111 (1276)
Q Consensus 1038 EfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f-~g~~~~Yy~~~~~g~---~~~W~g--~~LN~~np~Vr~~Iids 1111 (1276)
+.++||+++|++|++|++=+.+- ...+... ..| .+....||...++|. ...|.+ .-+|+.||+++++..+.
T Consensus 65 dp~~~i~~l~~~g~k~~~~~~P~-i~~~~~~--~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~ 141 (317)
T cd06600 65 EPKKLIDELHKRNVKLVTIVDPG-IRVDQNY--SPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGL 141 (317)
T ss_pred CHHHHHHHHHHCCCEEEEEeecc-ccCCCCC--hHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHH
Confidence 34699999999999999966443 3322110 011 122334554443332 233544 46899999999999999
Q ss_pred HHHHHHhCCCcEEccCCcc
Q psy9003 1112 LRWYLDEYQFDGFRFDGVT 1130 (1276)
Q Consensus 1112 l~~Wv~eygVDGFRfD~a~ 1130 (1276)
++..+.++|||||-+|...
T Consensus 142 ~~~~~~~~gvdg~w~D~~E 160 (317)
T cd06600 142 FSEWLNSQGVDGIWLDMNE 160 (317)
T ss_pred HHHHhhcCCCceEEeeCCC
Confidence 9998878999999999643
No 171
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=95.35 E-value=0.028 Score=52.54 Aligned_cols=42 Identities=17% Similarity=0.333 Sum_probs=32.3
Q ss_pred cEEEEEEccCCceEEEEeeccCCCcc----e-----EEEEEccCccccc-eEEEEE
Q psy9003 74 SVRCFEWAPSAQQLYLTGNVSLTPWS----I-----MEEASLSSIKLIQ-SIQYIL 119 (1276)
Q Consensus 74 g~~f~~wAP~A~~v~l~gdfn~~~w~----m-----~~~~~~~~~~~g~-~yky~i 119 (1276)
-|+|+-.+ +|+.|+|+|+| ++|+ | -|++.+ .+++|. .|||+|
T Consensus 3 ~v~f~~~~-~a~~V~v~G~F--~~W~~~~pm~~~~~~~~~~~-~L~~g~y~YkF~V 54 (79)
T cd02859 3 PTTFVWPG-GGKEVYVTGSF--DNWKKKIPLEKSGKGFSATL-RLPPGKYQYKFIV 54 (79)
T ss_pred EEEEEEcC-CCcEEEEEEEc--CCCCccccceECCCCcEEEE-EcCCCCEEEEEEE
Confidence 37888888 89999999999 6666 5 588877 578884 455554
No 172
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=95.28 E-value=0.023 Score=53.46 Aligned_cols=118 Identities=19% Similarity=0.104 Sum_probs=69.6
Q ss_pred hhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhh
Q psy9003 513 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 592 (1276)
Q Consensus 513 ~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 592 (1276)
.|+.+.|+..|+++.+++|+..+..++..+. ...+..+.|...++++.+.+|+..++.++...... .+..
T Consensus 8 ~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~-----~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~-----~~~l 77 (126)
T cd00204 8 RTPLHLAASNGHLEVVKLLLENGADVNAKDN-----DGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDG-----NTPL 77 (126)
T ss_pred CCHHHHHHHcCcHHHHHHHHHcCCCCCccCC-----CCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCC-----CCHH
Confidence 4667777777888888888877776653333 33344455557777788888887776444222222 3555
Q ss_pred cccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHHHHH
Q psy9003 593 HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYL 645 (1276)
Q Consensus 593 ~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (1276)
+-|...++.+.+++|+..+.+++.+-... ++..+-|...+..+.+++|
T Consensus 78 ~~a~~~~~~~~~~~L~~~~~~~~~~~~~~-----~~~l~~~~~~~~~~~~~~L 125 (126)
T cd00204 78 HLAARNGNLDVVKLLLKHGADVNARDKDG-----RTPLHLAAKNGHLEVVKLL 125 (126)
T ss_pred HHHHHcCcHHHHHHHHHcCCCCcccCCCC-----CCHHHHHHhcCCHHHHHHh
Confidence 66667777888888877764443322211 2333333333555555544
No 173
>KOG0515|consensus
Probab=95.28 E-value=0.023 Score=68.45 Aligned_cols=48 Identities=15% Similarity=0.133 Sum_probs=35.5
Q ss_pred ChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHh
Q psy9003 410 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 462 (1276)
Q Consensus 410 ~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~ 462 (1276)
|..|+ ||||+||.-++.-+++.||..+.|.. +.|+...+-.++.|+|.
T Consensus 613 DSdGW----TPLHCAASCNnv~~ckqLVe~Gaavf-AsTlSDmeTa~eKCee~ 660 (752)
T KOG0515|consen 613 DSDGW----TPLHCAASCNNVPMCKQLVESGAAVF-ASTLSDMETAAEKCEEM 660 (752)
T ss_pred cCCCC----chhhhhhhcCchHHHHHHHhccceEE-eeecccccchhhhcchh
Confidence 45678 99999999899999999998887764 45555545555555554
No 174
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=95.20 E-value=0.032 Score=64.87 Aligned_cols=87 Identities=13% Similarity=0.242 Sum_probs=58.6
Q ss_pred HHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCC-CCCCcccccCCCCC--CCCCCC--cCCCCCcHHHHHHHHHHHH
Q psy9003 1039 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFD-GTQACFFHDGPRGT--HPLWDS--RLFNYSEIEVLRFLLSNLR 1113 (1276)
Q Consensus 1039 fK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~-g~~~~Yy~~~~~g~--~~~W~g--~~LN~~np~Vr~~Iidsl~ 1113 (1276)
.++||+++|++|++|++-+. .+...+.. .|. +....||..++++. ...|.+ ..+|+.||+++++..+.++
T Consensus 68 p~~mi~~L~~~G~kv~~~i~-P~v~~~~~----~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~ 142 (319)
T cd06591 68 PKAMVRELHEMNAELMISIW-PTFGPETE----NYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLK 142 (319)
T ss_pred HHHHHHHHHHCCCEEEEEec-CCcCCCCh----hHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHH
Confidence 46899999999999999554 33433221 111 11234444443332 234544 5689999999999888877
Q ss_pred HHHHhCCCcEEccCCcc
Q psy9003 1114 WYLDEYQFDGFRFDGVT 1130 (1276)
Q Consensus 1114 ~Wv~eygVDGFRfD~a~ 1130 (1276)
..+.++|||||-+|...
T Consensus 143 ~~~~~~Gvdg~w~D~~E 159 (319)
T cd06591 143 KNYYDKGVDAWWLDAAE 159 (319)
T ss_pred HHhhcCCCcEEEecCCC
Confidence 66667999999999865
No 175
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=94.98 E-value=10 Score=48.75 Aligned_cols=221 Identities=12% Similarity=0.097 Sum_probs=133.3
Q ss_pred cCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCC
Q psy9003 483 LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT 562 (1276)
Q Consensus 483 ~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~ 562 (1276)
.+|..|..--+...+.+.+...+.-..-.++..+ +..|.++..+-+.+.+-+.++........-.|+-.. ..|.
T Consensus 302 ~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~---~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~---k~G~ 375 (697)
T PLN03081 302 LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIF---SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYS---KWGR 375 (697)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHH---HCCC
Confidence 3466666555666666666544433222233333 345677777777777777774433223333333333 3688
Q ss_pred HHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHH
Q psy9003 563 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQL 642 (1276)
Q Consensus 563 ~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (1276)
++.+..+.+.+.+.|+..=-.++..-| .+|..+.+--+++.|.+.|.+-+..--.-++.+|.++ |.+|++
T Consensus 376 ~~~A~~vf~~m~~~d~~t~n~lI~~y~-------~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~---g~~~~a 445 (697)
T PLN03081 376 MEDARNVFDRMPRKNLISWNALIAGYG-------NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYS---GLSEQG 445 (697)
T ss_pred HHHHHHHHHhCCCCCeeeHHHHHHHHH-------HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC---CcHHHH
Confidence 888888888888776544334444444 6788899988999998888877766445667777764 668888
Q ss_pred HHHHHHHHhh-cCCCChHHHhhhhhhhhhcccCCChhHHHHHHHHHHhhccCCChhHHHhhHHHHhhcccCCCHHHHHHH
Q psy9003 643 KYLVDECHKA-GLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYL 721 (1276)
Q Consensus 643 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1276)
..+++.|.+. |---+.+.-.-+++.+-++| .++.+.-+++.+- --.+...-..++.+|. .||.+|.++..
T Consensus 446 ~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G---~~~eA~~~~~~~~---~~p~~~~~~~Ll~a~~---~~g~~~~a~~~ 516 (697)
T PLN03081 446 WEIFQSMSENHRIKPRAMHYACMIELLGREG---LLDEAYAMIRRAP---FKPTVNMWAALLTACR---IHKNLELGRLA 516 (697)
T ss_pred HHHHHHHHHhcCCCCCccchHhHHHHHHhcC---CHHHHHHHHHHCC---CCCCHHHHHHHHHHHH---HcCCcHHHHHH
Confidence 8888888763 32333334444666765554 4666655554432 1122223344555543 46777777777
Q ss_pred HHHHHhc
Q psy9003 722 VDECHKA 728 (1276)
Q Consensus 722 ~~~~~~~ 728 (1276)
.+++.+-
T Consensus 517 ~~~l~~~ 523 (697)
T PLN03081 517 AEKLYGM 523 (697)
T ss_pred HHHHhCC
Confidence 7776543
No 176
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=94.84 E-value=0.045 Score=63.58 Aligned_cols=88 Identities=14% Similarity=0.220 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCC-CCCCcccccCCCCC----CCCCCC--cCCCCCcHHHHHHHHH
Q psy9003 1038 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFD-GTQACFFHDGPRGT----HPLWDS--RLFNYSEIEVLRFLLS 1110 (1276)
Q Consensus 1038 EfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~-g~~~~Yy~~~~~g~----~~~W~g--~~LN~~np~Vr~~Iid 1110 (1276)
+.++||+++|++|++|++-+.+- ...+.+ .|+ +....||..+.++. ...|.+ ..+|+.||+++++..+
T Consensus 74 dp~~mi~~L~~~g~k~~~~i~P~-i~~~~~----~y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~ 148 (317)
T cd06599 74 DPAAFVAKFHERGIRLAPNIKPG-LLQDHP----RYKELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKE 148 (317)
T ss_pred CHHHHHHHHHHCCCEEEEEeCCc-ccCCCH----HHHHHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHH
Confidence 45699999999999999855443 333221 111 12234554333322 123433 4689999999999999
Q ss_pred HHHHHHHhCCCcEEccCCcc
Q psy9003 1111 NLRWYLDEYQFDGFRFDGVT 1130 (1276)
Q Consensus 1111 sl~~Wv~eygVDGFRfD~a~ 1130 (1276)
.++.-+.+.|||||-+|...
T Consensus 149 ~~~~~~~~~Gvdg~w~D~~E 168 (317)
T cd06599 149 GVKEALLDLGIDSTWNDNNE 168 (317)
T ss_pred HHHHHHhcCCCcEEEecCCC
Confidence 99777777899999999754
No 177
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=94.67 E-value=0.028 Score=69.94 Aligned_cols=20 Identities=35% Similarity=0.504 Sum_probs=11.0
Q ss_pred CCCHHHHHHHHHHHHHcCCC
Q psy9003 161 FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 161 ygtp~~l~~~vd~~h~~~i~ 180 (1276)
|||.+||+.||++||++||+
T Consensus 71 ~Gt~~~~~~lv~~ah~~gi~ 90 (543)
T TIGR02403 71 FGTMADFEELVSEAKKRNIK 90 (543)
T ss_pred cCCHHHHHHHHHHHHHCCCE
Confidence 55555555555555555555
No 178
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=94.54 E-value=0.012 Score=51.11 Aligned_cols=50 Identities=12% Similarity=0.022 Sum_probs=26.1
Q ss_pred HhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhH
Q psy9003 398 LVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQL 452 (1276)
Q Consensus 398 Li~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l 452 (1276)
|++...+++...+..+. ||||.|+..|+.++|++|+ ...|++-..+.+..
T Consensus 1 LL~~~~~~~n~~d~~G~----T~LH~A~~~g~~~~v~~Ll-~~g~d~~~~d~~G~ 50 (56)
T PF13857_consen 1 LLEHGPADVNAQDKYGN----TPLHWAARYGHSEVVRLLL-QNGADPNAKDKDGQ 50 (56)
T ss_dssp -----T--TT---TTS------HHHHHHHHT-HHHHHHHH-HCT--TT---TTS-
T ss_pred CCccCcCCCcCcCCCCC----cHHHHHHHcCcHHHHHHHH-HCcCCCCCCcCCCC
Confidence 34444567777788888 9999999999999999999 77777777666553
No 179
>KOG0505|consensus
Probab=94.53 E-value=0.072 Score=64.76 Aligned_cols=186 Identities=17% Similarity=0.148 Sum_probs=120.9
Q ss_pred ccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCC
Q psy9003 444 GLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG 523 (1276)
Q Consensus 444 ~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g 523 (1276)
+.+++-+....|+.-...++.-|-|. .|..|-++.-...|-++|||+..+-+|..++ -.||+.|.|.--|
T Consensus 48 ~~~~d~~ev~~ll~~ga~~~~~n~Dg-----lTalhq~~id~~~e~v~~l~e~ga~Vn~~d~-----e~wtPlhaaascg 117 (527)
T KOG0505|consen 48 CSRGDLEEVRKLLNRGASPNLCNVDG-----LTALHQACIDDNLEMVKFLVENGANVNAQDN-----EGWTPLHAAASCG 117 (527)
T ss_pred cccccHHHHHHHhccCCCccccCCcc-----chhHHHHHhcccHHHHHHHHHhcCCcccccc-----ccCCcchhhcccc
Confidence 33444444444444444445445555 7889999999999999999999999998887 7899999999999
Q ss_pred CHHHHHHHHhhhhhcC-CCCCcc----------hhhhhhhhhhccccCCCHHHHH------HHHHhhhhcc-CCC-Chhh
Q psy9003 524 TPEQLKYLVDECHKAG-LFGTPE----------QLKYLVDECHKAGLFGTPEQLK------YLVDECHKAG-LFG-TPEQ 584 (1276)
Q Consensus 524 ~~e~~~~lv~~~~~~~-~~~t~~----------~l~~~~~~~~~~~~~~~~e~~~------~l~~~~~~~~-~~~-~~~~ 584 (1276)
.+.+++||+.+++... ||...+ .+.+.-+.++..+.. ||+.. .|=|+-+-+| -+. ....
T Consensus 118 ~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~--iea~R~~~e~~ml~D~~q~l~~G~~~d~~~ 195 (527)
T KOG0505|consen 118 YLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGID--IEAARKAEEQTMLDDARQWLNAGAELDARH 195 (527)
T ss_pred cHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhccc--HHHHhhhhHHHHHHHHHHHHhccccccccc
Confidence 9999999999999988 444433 344444444444444 55543 3444444444 111 1111
Q ss_pred hhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHHHHHHH
Q psy9003 585 LKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 647 (1276)
Q Consensus 585 ~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (1276)
.. -=|++|=|...|-.|.+++|...+..-+++=++- -+=.|-|.--|..+-.+.||.
T Consensus 196 ~r-G~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dg-----WtPlHAAA~Wg~~~~~elL~~ 252 (527)
T KOG0505|consen 196 AR-GATALHVAAANGYTEVAALLLQAGYSVNIKDYDG-----WTPLHAAAHWGQEDACELLVE 252 (527)
T ss_pred cc-cchHHHHHHhhhHHHHHHHHHHhccCcccccccC-----CCcccHHHHhhhHhHHHHHHH
Confidence 11 4567777888888888888888877776554432 333344444455555555655
No 180
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=94.41 E-value=5.2 Score=51.26 Aligned_cols=215 Identities=16% Similarity=0.117 Sum_probs=142.5
Q ss_pred CCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHH
Q psy9003 523 GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPE 602 (1276)
Q Consensus 523 g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 602 (1276)
|.++..+-+-+.+.+.++........-.|+.. +..|.++.+..+.+.+.+.|+..--.++..-| ..|..+
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y---~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~-------~~g~~~ 307 (697)
T PLN03081 238 GSARAGQQLHCCVLKTGVVGDTFVSCALIDMY---SKCGDIEDARCVFDGMPEKTTVAWNSMLAGYA-------LHGYSE 307 (697)
T ss_pred CcHHHHHHHHHHHHHhCCCccceeHHHHHHHH---HHCCCHHHHHHHHHhCCCCChhHHHHHHHHHH-------hCCCHH
Confidence 45555555555555555332211111122222 24578888888888887766544444444455 568889
Q ss_pred HHHHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHHHHHHHHHHhhcCCCChHHHhhhhhhhhhcccCCChhHHHH
Q psy9003 603 QLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKY 682 (1276)
Q Consensus 603 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1276)
.+--+...|.+.|.+.+..---.++.+|.+. |.+++++-+...+.+.|--.+......+++...+. |.++.+.-
T Consensus 308 eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~---g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~---G~~~~A~~ 381 (697)
T PLN03081 308 EALCLYYEMRDSGVSIDQFTFSIMIRIFSRL---ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKW---GRMEDARN 381 (697)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHC---CCHHHHHH
Confidence 9999999999998887776545667888775 56788888888888887766666777888888875 55788888
Q ss_pred HHHHHHhhccCCChhHHHhhHHHHhhcccCCCHHHHHHHHHHHHhccCCCCchhhhhhhhhhhccCcccChhhhhhhHhh
Q psy9003 683 LVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDE 762 (1276)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~F~~~ 762 (1276)
+.+.|.+.+ +-.-..++..+ +.+|..+.+.-+.++|.+.|..-+....--+..+|...|++. +.++.|..-
T Consensus 382 vf~~m~~~d----~~t~n~lI~~y---~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~--~a~~~f~~m 452 (697)
T PLN03081 382 VFDRMPRKN----LISWNALIAGY---GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSE--QGWEIFQSM 452 (697)
T ss_pred HHHhCCCCC----eeeHHHHHHHH---HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHH--HHHHHHHHH
Confidence 888886531 11222333433 467889999999999999987655555555688888888753 345555543
No 181
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=94.07 E-value=0.048 Score=68.00 Aligned_cols=20 Identities=25% Similarity=0.516 Sum_probs=9.9
Q ss_pred CCCHHHHHHHHHHHHHcCCC
Q psy9003 161 FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 161 ygtp~~l~~~vd~~h~~~i~ 180 (1276)
|||.+||+.||++||++||+
T Consensus 77 ~Gt~~d~~~lv~~~h~~gi~ 96 (551)
T PRK10933 77 YGTLDDFDELVAQAKSRGIR 96 (551)
T ss_pred cCCHHHHHHHHHHHHHCCCE
Confidence 44444444444444444444
No 182
>PLN02361 alpha-amylase
Probab=94.01 E-value=0.059 Score=64.76 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHhcCc----------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 144 TPEQLKYLVDECHKAGL----------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 144 y~e~a~~li~y~~~~~y----------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
|+.|.++ +||++++|+ |||.+||+.||++||++||+
T Consensus 28 w~~i~~k-l~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~ 91 (401)
T PLN02361 28 WRNLEGK-VPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVR 91 (401)
T ss_pred HHHHHHH-HHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCE
Confidence 6888888 589999999 99999999999999999998
No 183
>KOG4214|consensus
Probab=93.93 E-value=0.037 Score=53.88 Aligned_cols=67 Identities=15% Similarity=0.122 Sum_probs=36.4
Q ss_pred hhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhh
Q psy9003 513 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQ 584 (1276)
Q Consensus 513 ~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~ 584 (1276)
-++.|+|...|-+++|.+|+-|+++|+--+- |.||-.--|.-+|-..-+|+|...++++-++..|-+
T Consensus 35 R~plhyAAD~GQl~ilefli~iGA~i~~kDK-----ygITPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~ 101 (117)
T KOG4214|consen 35 RTPLHYAADYGQLSILEFLISIGANIQDKDK-----YGITPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGT 101 (117)
T ss_pred cccchHhhhcchHHHHHHHHHhccccCCccc-----cCCcHHHHHHHHhhHHHHHHHHHcCcccceeCCCch
Confidence 3455555555555555555555555554443 555555555555555555555555555554444433
No 184
>KOG0512|consensus
Probab=93.70 E-value=0.073 Score=56.95 Aligned_cols=147 Identities=16% Similarity=0.001 Sum_probs=93.0
Q ss_pred CHHHHHHHhhhhhccC-------CCCcccchhhhh-------ccccccccCCChhhhHHhhhhhccccCCCChhhHHHHH
Q psy9003 315 TPEQLKYLVDECHKAG-------LFGTPEQLKYLV-------DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLV 380 (1276)
Q Consensus 315 si~~l~~Lv~~~~~~~-------~~~~~~~~~~~~-------~~~~~a~~~g~ie~~~yLi~~~h~~~~~~~~e~~~~~~ 380 (1276)
+.+|+-.|-.+.|.+| +-++|++.|.-. .-.-+|...+.+.-|+-|..+-. .-+|..++- =-
T Consensus 23 ~k~q~e~lr~h~~~~pgmfvS~W~ddsdeleE~dk~me~dp~rl~lwaae~nrl~eV~~lL~e~a-n~vNtrD~D---~Y 98 (228)
T KOG0512|consen 23 HKNQLEELRTHGHLIPGMFVSLWVDDSEELEEQDKNMEKDPIRLLLWAAEKNRLTEVQRLLSEKA-NHVNTRDED---EY 98 (228)
T ss_pred HHHHHHHHHhcCcCCCcceeeeecCCcHHHHhhccCcccCHHHHHHHHHhhccHHHHHHHHHhcc-ccccccccc---cc
Confidence 3567777777777777 344555554441 22236677788888887766543 114433320 12
Q ss_pred hhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHh
Q psy9003 381 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 460 (1276)
Q Consensus 381 ~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~ 460 (1276)
|-.|.|..+||.|||+.|+- .|-++-+.|.+|. ||||.|+.|+.-+|+-.|+.-+.-. .+-|...++-|.-.+.
T Consensus 99 TpLHRAaYn~h~div~~ll~-~gAn~~a~T~~GW----TPLhSAckWnN~~va~~LLqhgaDV-nA~t~g~ltpLhlaa~ 172 (228)
T KOG0512|consen 99 TPLHRAAYNGHLDIVHELLL-SGANKEAKTNEGW----TPLHSACKWNNFEVAGRLLQHGADV-NAQTKGLLTPLHLAAG 172 (228)
T ss_pred cHHHHHHhcCchHHHHHHHH-ccCCcccccccCc----cchhhhhcccchhHHHHHHhccCcc-cccccccchhhHHhhc
Confidence 55677888999999999983 4557788899999 9999999999999998887654322 2233333333332222
Q ss_pred HhccCCChhhHHHh
Q psy9003 461 KAGLFGTPEQLKYL 474 (1276)
Q Consensus 461 ~~~~~~~~~~~~~~ 474 (1276)
.+|+-+-+++|
T Consensus 173 ---~rn~r~t~~~L 183 (228)
T KOG0512|consen 173 ---NRNSRDTLELL 183 (228)
T ss_pred ---ccchHHHHHHH
Confidence 33444555555
No 185
>KOG0195|consensus
Probab=93.48 E-value=0.069 Score=60.59 Aligned_cols=90 Identities=12% Similarity=0.002 Sum_probs=67.3
Q ss_pred hhhccccccccCCChhhhHHhhhhhcccc-CCCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhccc
Q psy9003 340 YLVDECHKAGLFGTPEQLKYLVDECHKAG-LFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLV 418 (1276)
Q Consensus 340 ~~~~~~~~a~~~g~ie~~~yLi~~~h~~~-~~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~v 418 (1276)
++..+.|+|+.-||.-+|..|+--...+| +|.-+|+-.++.+ .+||-|||.-|+-+--. --+++.-|.
T Consensus 33 hgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaa------ahghrdivqkll~~kad-vnavnehgn---- 101 (448)
T KOG0195|consen 33 HGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAA------AHGHRDIVQKLLSRKAD-VNAVNEHGN---- 101 (448)
T ss_pred cCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhh------hcccHHHHHHHHHHhcc-cchhhccCC----
Confidence 45677889999999999999988888888 4666664444443 47899999888866543 234444567
Q ss_pred ccchhccccCCHhHHHhhcccc
Q psy9003 419 DECHKAGLFGTPEQLKYLVDEC 440 (1276)
Q Consensus 419 t~lh~a~~~~~~~~~~yli~~~ 440 (1276)
||||+|+.||..-+.+-||+.+
T Consensus 102 tplhyacfwgydqiaedli~~g 123 (448)
T KOG0195|consen 102 TPLHYACFWGYDQIAEDLISCG 123 (448)
T ss_pred CchhhhhhhcHHHHHHHHHhcc
Confidence 9999999999988877777644
No 186
>PLN02784 alpha-amylase
Probab=93.39 E-value=0.078 Score=68.30 Aligned_cols=36 Identities=31% Similarity=0.397 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHhcCc----------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 144 TPEQLKYLVDECHKAGL----------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 144 y~e~a~~li~y~~~~~y----------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
|+.|.+. +||++++|+ |||.+||+.||++||++||+
T Consensus 520 ~~~I~ek-ldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIk 583 (894)
T PLN02784 520 YMELGEK-AAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIK 583 (894)
T ss_pred HHHHHHH-HHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCE
Confidence 7888776 799999998 99999999999999999999
No 187
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=93.38 E-value=0.073 Score=66.17 Aligned_cols=46 Identities=15% Similarity=0.233 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhcccCCCCCeeEeecCCCeEEEEEc----CcEEEEEeCC
Q psy9003 1216 LFDAAMNTTEERFKWLSADPGYVSTKHEGDKVIIFER----AGLLFAFNFN 1262 (1276)
Q Consensus 1216 ~F~~~Ln~l~~~~p~L~~~~~~~l~nHD~~RVlsf~R----~~ll~v~N~~ 1262 (1276)
.|.+.|+++|++.|+|+.+. +.....+.++|++|.| +.+++++|++
T Consensus 440 ~~yr~Li~lRk~~~aL~~G~-~~~l~~~~~~v~~f~R~~~~~~vlVv~N~s 489 (539)
T TIGR02456 440 HWTRRVLHVRKAHPAFGRGS-LTFLPTGNRRVLAFLREYEGERVLCVFNFS 489 (539)
T ss_pred HHHHHHHHHHhcCcccccCc-eEEEecCCCCEEEEEEEcCCcEEEEEEeCC
Confidence 34555555555555544322 2222222334555555 1355555554
No 188
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=93.16 E-value=0.066 Score=45.79 Aligned_cols=51 Identities=22% Similarity=0.147 Sum_probs=26.3
Q ss_pred hhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHH
Q psy9003 514 DECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYL 569 (1276)
Q Consensus 514 t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l 569 (1276)
|..+.|+..|++|++++|++...++|..+. ..-|..+.|+..|+++-+++|
T Consensus 3 t~lh~A~~~g~~~~~~~Ll~~~~din~~d~-----~g~t~lh~A~~~g~~~~~~~L 53 (54)
T PF13637_consen 3 TPLHWAARSGNLEIVKLLLEHGADINAQDE-----DGRTPLHYAAKNGNIDIVKFL 53 (54)
T ss_dssp BHHHHHHHTT-HHHHHHHHHTTSGTT-B-T-----TS--HHHHHHHTT-HHHHHHH
T ss_pred hHHHHHHHhCCHHHHHHHHHCCCCCCCCCC-----CCCCHHHHHHHccCHHHHHHH
Confidence 455566666666666666666655553333 233445555566666666665
No 189
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=93.09 E-value=0.094 Score=64.21 Aligned_cols=16 Identities=19% Similarity=0.106 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHhcCc
Q psy9003 144 TPEQLKYLVDECHKAGL 160 (1276)
Q Consensus 144 y~e~a~~li~y~~~~~y 160 (1276)
|+-|.++| ||++++|+
T Consensus 21 ~~~I~~kl-dyl~~LGv 36 (479)
T PRK09441 21 WNRLAERA-PELAEAGI 36 (479)
T ss_pred HHHHHHHH-HHHHHcCC
Confidence 67899996 99999998
No 190
>PRK10785 maltodextrin glucosidase; Provisional
Probab=93.04 E-value=0.098 Score=65.91 Aligned_cols=37 Identities=19% Similarity=0.177 Sum_probs=34.5
Q ss_pred ChHHHHHHHHHHHHhcCc----------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 143 GTPEQLKYLVDECHKAGL----------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 143 ~y~e~a~~li~y~~~~~y----------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
+.+-|.++| ||+|++|. |||.+||+.||++||+.||+
T Consensus 177 Dl~GI~~kL-dYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGik 241 (598)
T PRK10785 177 DLDGISEKL-PYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMR 241 (598)
T ss_pred CHHHHHHHH-HHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCE
Confidence 568888886 99999998 99999999999999999999
No 191
>KOG4214|consensus
Probab=93.00 E-value=0.076 Score=51.82 Aligned_cols=93 Identities=16% Similarity=0.083 Sum_probs=63.1
Q ss_pred ccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCC
Q psy9003 520 GLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG 599 (1276)
Q Consensus 520 ~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (1276)
+.+|.++-||--|.++ .|||++.+ .=+..|.|--.|-++-|.+|+-++++|+... ||-+|..--|.-.|
T Consensus 10 vkNG~~DeVk~~v~~g--~nVn~~~g----gR~plhyAAD~GQl~ilefli~iGA~i~~kD-----KygITPLLsAvwEG 78 (117)
T KOG4214|consen 10 VKNGEIDEVKQSVNEG--LNVNEIYG----GRTPLHYAADYGQLSILEFLISIGANIQDKD-----KYGITPLLSAVWEG 78 (117)
T ss_pred hccCcHHHHHHHHHcc--ccHHHHhC----CcccchHhhhcchHHHHHHHHHhccccCCcc-----ccCCcHHHHHHHHh
Confidence 4477888888777776 66776632 1123355557788888888888888887433 34455555556677
Q ss_pred CHHHHHHHHhhhhhccCCCChhhh
Q psy9003 600 TPEQLKYLVDECHKAGLFGTPEQL 623 (1276)
Q Consensus 600 ~~e~~~~l~~~~~~~~~~~~~~~~ 623 (1276)
+..-+|+|+..++++-++..+-++
T Consensus 79 H~~cVklLL~~GAdrt~~~PdG~~ 102 (117)
T KOG4214|consen 79 HRDCVKLLLQNGADRTIHAPDGTA 102 (117)
T ss_pred hHHHHHHHHHcCcccceeCCCchh
Confidence 777788888888888777666554
No 192
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=92.99 E-value=0.51 Score=55.26 Aligned_cols=118 Identities=14% Similarity=0.255 Sum_probs=74.4
Q ss_pred HHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCccccc-----CC---CCCCCCC-CCcCCCCCcHHHHHHHHH
Q psy9003 1040 KYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHD-----GP---RGTHPLW-DSRLFNYSEIEVLRFLLS 1110 (1276)
Q Consensus 1040 K~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~-----~~---~g~~~~W-~g~~LN~~np~Vr~~Iid 1110 (1276)
++=|+++|+.|.+||-=+-.. +...+ ..||.. .+ -+..++| +...+|+.+|+.+++|.+
T Consensus 84 ~~~i~~Lk~~g~~viaYlSvG---e~E~~---------R~y~~~~~~~~~~~~l~~~n~~W~g~~~vd~~~~~W~~il~~ 151 (315)
T TIGR01370 84 PEEIVRAAAAGRWPIAYLSIG---AAEDY---------RFYWQKGWKVNAPAWLGNEDPDWPGNYDVKYWDPEWKAIAFS 151 (315)
T ss_pred HHHHHHHHhCCcEEEEEEEch---hcccc---------chhhhhhhhcCCHHHhCCCCCCCCCceeEecccHHHHHHHHH
Confidence 345667888998886433222 21111 122221 11 2346788 456789999999999999
Q ss_pred HHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEE
Q psy9003 1111 NLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITI 1180 (1276)
Q Consensus 1111 sl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilI 1180 (1276)
-+...++ -|+|||=+|.+....+.. ..+.++. ....+-+.|++.|.+.+|+.+|++++|
T Consensus 152 rl~~l~~-kGfDGvfLD~lDsy~~~~-~~~~~~~---------~~~~~m~~~i~~Ia~~ar~~~P~~~II 210 (315)
T TIGR01370 152 YLDRVIA-QGFDGVYLDLIDAFEYWA-ENGDNRP---------GAAAEMIAFVCEIAAYARAQNPQFVII 210 (315)
T ss_pred HHHHHHH-cCCCeEeeccchhhhhhc-ccCCcch---------hhHHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 8877666 499999999876542110 0000000 001234679999988999999999998
No 193
>PLN00196 alpha-amylase; Provisional
Probab=92.98 E-value=0.11 Score=62.93 Aligned_cols=20 Identities=35% Similarity=0.650 Sum_probs=10.0
Q ss_pred CCCHHHHHHHHHHHHHcCCC
Q psy9003 161 FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 161 ygtp~~l~~~vd~~h~~~i~ 180 (1276)
|||.+||+.||++||++||+
T Consensus 88 fGt~~elk~Lv~~aH~~GIk 107 (428)
T PLN00196 88 YGNEAQLKSLIEAFHGKGVQ 107 (428)
T ss_pred CCCHHHHHHHHHHHHHCCCE
Confidence 44445555555555555544
No 194
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=92.70 E-value=2.8 Score=46.52 Aligned_cols=106 Identities=17% Similarity=0.186 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCC-CcCCCCCcHHHHHHHHHHHH
Q psy9003 1035 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWD-SRLFNYSEIEVLRFLLSNLR 1113 (1276)
Q Consensus 1035 t~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~-g~~LN~~np~Vr~~Iidsl~ 1113 (1276)
..+.|+++|++|+++||+||+|+--. . .|. +.......+...+++.+..+
T Consensus 60 ~~~~ld~~v~~a~~~gi~vild~h~~---~--------------------------~w~~~~~~~~~~~~~~~~~~~~~~ 110 (281)
T PF00150_consen 60 YLARLDRIVDAAQAYGIYVILDLHNA---P--------------------------GWANGGDGYGNNDTAQAWFKSFWR 110 (281)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEEEEES---T--------------------------TCSSSTSTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeccC---c--------------------------cccccccccccchhhHHHHHhhhh
Confidence 36889999999999999999998544 1 110 11122233445666677777
Q ss_pred HHHHhC----CCcEEccCCccccccccCCCCC--CCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEc
Q psy9003 1114 WYLDEY----QFDGFRFDGVTSMLYHNHGCGE--GFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAED 1183 (1276)
Q Consensus 1114 ~Wv~ey----gVDGFRfD~a~~L~~~d~g~g~--~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~ 1183 (1276)
.++++| .|-|| |.+.... ..+. .|. ......-..+.+.+.+.||+..|+..++.+.
T Consensus 111 ~la~~y~~~~~v~~~--el~NEP~----~~~~~~~w~--------~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~ 172 (281)
T PF00150_consen 111 ALAKRYKDNPPVVGW--ELWNEPN----GGNDDANWN--------AQNPADWQDWYQRAIDAIRAADPNHLIIVGG 172 (281)
T ss_dssp HHHHHHTTTTTTEEE--ESSSSGC----STTSTTTTS--------HHHTHHHHHHHHHHHHHHHHTTSSSEEEEEE
T ss_pred hhccccCCCCcEEEE--EecCCcc----ccCCccccc--------cccchhhhhHHHHHHHHHHhcCCcceeecCC
Confidence 777776 34343 3222110 0000 010 0001122457888999999999998777775
No 195
>PRK10658 putative alpha-glucosidase; Provisional
Probab=92.39 E-value=0.16 Score=64.76 Aligned_cols=89 Identities=15% Similarity=0.306 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCC-CCCCCcccccCCCCCC---CCCC--CcCCCCCcHHHHHHHHHH
Q psy9003 1038 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-DGTQACFFHDGPRGTH---PLWD--SRLFNYSEIEVLRFLLSN 1111 (1276)
Q Consensus 1038 EfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f-~g~~~~Yy~~~~~g~~---~~W~--g~~LN~~np~Vr~~Iids 1111 (1276)
+.++||+++|++|++|++-+.+. ...+.+ .| .+....||..+++|.. ..|. ..-+|+.||++|++..+.
T Consensus 326 dp~~mi~~L~~~G~k~~~~i~P~-i~~~s~----~f~e~~~~gy~vk~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~ 400 (665)
T PRK10658 326 DPEGMLKRLKAKGLKICVWINPY-IAQKSP----LFKEGKEKGYLLKRPDGSVWQWDKWQPGMAIVDFTNPDACKWYADK 400 (665)
T ss_pred CHHHHHHHHHHCCCEEEEeccCC-cCCCch----HHHHHHHCCeEEECCCCCEeeeeecCCCceeecCCCHHHHHHHHHH
Confidence 45789999999999999876542 332211 12 1233456665555543 2344 356899999999999999
Q ss_pred HHHHHHhCCCcEEccCCcccc
Q psy9003 1112 LRWYLDEYQFDGFRFDGVTSM 1132 (1276)
Q Consensus 1112 l~~Wv~eygVDGFRfD~a~~L 1132 (1276)
++.+++ +|||||-.|....+
T Consensus 401 ~~~l~d-~Gvdgfw~D~gE~~ 420 (665)
T PRK10658 401 LKGLLD-MGVDCFKTDFGERI 420 (665)
T ss_pred HHHHHh-cCCcEEEecCCcee
Confidence 999777 79999999976655
No 196
>PF13606 Ank_3: Ankyrin repeat
Probab=92.39 E-value=0.047 Score=42.15 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=20.5
Q ss_pred ccchhccccCCHhHHHhhcccc
Q psy9003 419 DECHKAGLFGTPEQLKYLVDEC 440 (1276)
Q Consensus 419 t~lh~a~~~~~~~~~~yli~~~ 440 (1276)
||||.|+..|++|+|+|||..+
T Consensus 4 T~Lh~A~~~g~~e~v~~Ll~~g 25 (30)
T PF13606_consen 4 TPLHLAASNGNIEIVKYLLEHG 25 (30)
T ss_pred CHHHHHHHhCCHHHHHHHHHcC
Confidence 9999999999999999999753
No 197
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=92.30 E-value=0.19 Score=59.02 Aligned_cols=88 Identities=19% Similarity=0.323 Sum_probs=58.1
Q ss_pred HHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCC-CCCCCcccccCCCCC---CCCCCC--cCCCCCcHHHHHHHHHHH
Q psy9003 1039 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-DGTQACFFHDGPRGT---HPLWDS--RLFNYSEIEVLRFLLSNL 1112 (1276)
Q Consensus 1039 fK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f-~g~~~~Yy~~~~~g~---~~~W~g--~~LN~~np~Vr~~Iidsl 1112 (1276)
.++|++++|++|++|++=+.+ +...+.. ...| .+....||-.+++|. ...|.+ .-+|+.||+.+++..+.+
T Consensus 66 p~~m~~~l~~~g~~~~~~~~P-~v~~~~~--~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~ 142 (339)
T cd06604 66 PKELIKELHEQGFKVVTIIDP-GVKVDPG--YDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLY 142 (339)
T ss_pred HHHHHHHHHHCCCEEEEEEeC-ceeCCCC--ChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHH
Confidence 479999999999999977644 2221100 0011 122234554444442 234443 447999999999999999
Q ss_pred HHHHHhCCCcEEccCCcc
Q psy9003 1113 RWYLDEYQFDGFRFDGVT 1130 (1276)
Q Consensus 1113 ~~Wv~eygVDGFRfD~a~ 1130 (1276)
+..++ .|||||-+|...
T Consensus 143 ~~~~~-~Gvdg~w~D~~E 159 (339)
T cd06604 143 KKFVD-LGVDGIWNDMNE 159 (339)
T ss_pred HHHhh-CCCceEeecCCC
Confidence 98775 899999999754
No 198
>PRK10426 alpha-glucosidase; Provisional
Probab=92.17 E-value=0.2 Score=63.65 Aligned_cols=90 Identities=9% Similarity=0.111 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCC-CCCCCcccccCCCCCC---CCCC--CcCCCCCcHHHHHHHHHH
Q psy9003 1038 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-DGTQACFFHDGPRGTH---PLWD--SRLFNYSEIEVLRFLLSN 1111 (1276)
Q Consensus 1038 EfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f-~g~~~~Yy~~~~~g~~---~~W~--g~~LN~~np~Vr~~Iids 1111 (1276)
+.++||+++|++|++|++=+-+- ...+.+ .| .+....||..+++|.. ..|. +.-+|+.||++|++..+.
T Consensus 270 dp~~mi~~L~~~G~k~v~~i~P~-v~~~~~----~y~e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~ 344 (635)
T PRK10426 270 QLDSRIKQLNEEGIQFLGYINPY-LASDGD----LCEEAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEV 344 (635)
T ss_pred CHHHHHHHHHHCCCEEEEEEcCc-cCCCCH----HHHHHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHH
Confidence 46789999999999999886543 222211 11 1222345554444331 2232 456899999999999999
Q ss_pred HHHHHHhCCCcEEccCCcccc
Q psy9003 1112 LRWYLDEYQFDGFRFDGVTSM 1132 (1276)
Q Consensus 1112 l~~Wv~eygVDGFRfD~a~~L 1132 (1276)
++..+.++|||||-.|.-..+
T Consensus 345 ~~~~~~~~Gvdg~w~D~~E~~ 365 (635)
T PRK10426 345 IKKNMIGLGCSGWMADFGEYL 365 (635)
T ss_pred HHHHHhhcCCCEEeeeCCCCC
Confidence 987777799999999976544
No 199
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=92.15 E-value=0.11 Score=66.08 Aligned_cols=89 Identities=15% Similarity=0.003 Sum_probs=71.1
Q ss_pred hhhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhh
Q psy9003 474 LVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDE 553 (1276)
Q Consensus 474 ~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~ 553 (1276)
+-...+.|..+|.++.+++|+....++|.... ...|.+|.|+..|+++++++|++.++++|..+. ..-|.
T Consensus 82 ~~~~L~~aa~~G~~~~vk~LL~~Gadin~~d~-----~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~-----~G~Tp 151 (664)
T PTZ00322 82 LTVELCQLAASGDAVGARILLTGGADPNCRDY-----DGRTPLHIACANGHVQVVRVLLEFGADPTLLDK-----DGKTP 151 (664)
T ss_pred hHHHHHHHHHcCCHHHHHHHHHCCCCCCCcCC-----CCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCC-----CCCCH
Confidence 34456677788999999999988888776543 347889999999999999999999988886655 45566
Q ss_pred hhccccCCCHHHHHHHHHh
Q psy9003 554 CHKAGLFGTPEQLKYLVDE 572 (1276)
Q Consensus 554 ~~~~~~~~~~e~~~~l~~~ 572 (1276)
.+.|...|+.+.+++|.+.
T Consensus 152 Lh~A~~~g~~~iv~~Ll~~ 170 (664)
T PTZ00322 152 LELAEENGFREVVQLLSRH 170 (664)
T ss_pred HHHHHHCCcHHHHHHHHhC
Confidence 7777789999999999876
No 200
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=92.06 E-value=0.25 Score=51.14 Aligned_cols=122 Identities=21% Similarity=0.134 Sum_probs=81.5
Q ss_pred HhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCC-----HHHHHHHHHhhh--hcc-CCCChh
Q psy9003 512 LVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT-----PEQLKYLVDECH--KAG-LFGTPE 583 (1276)
Q Consensus 512 ~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~-----~e~~~~l~~~~~--~~~-~~~~~~ 583 (1276)
..+..+.++..+..+.+++|+....+++..+. ...|..+.|...|+ .+.+++|++.++ +++ .....
T Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~- 146 (235)
T COG0666 73 GRLPLHSAASKGDDKIVKLLLASGADVNAKDA-----DGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDED- 146 (235)
T ss_pred ccCHHHHHHHcCcHHHHHHHHHcCCCcccccC-----CCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCC-
Confidence 36667777777888888888888888875555 33444444556666 888888888888 444 21111
Q ss_pred hhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHHHHHHHH
Q psy9003 584 QLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDE 648 (1276)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (1276)
.-|.++-|..+|..+.+++|+..++..+..- .+--++...|...+.++.++.+.+.
T Consensus 147 ----g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~-----~~g~t~l~~a~~~~~~~~~~~l~~~ 202 (235)
T COG0666 147 ----GNTPLHWAALNGDADIVELLLEAGADPNSRN-----SYGVTALDPAAKNGRIELVKLLLDK 202 (235)
T ss_pred ----CCchhHHHHHcCchHHHHHHHhcCCCCcccc-----cCCCcchhhhcccchHHHHHHHHhc
Confidence 2466666668888888888888877776551 2235556666666777777777763
No 201
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=92.01 E-value=0.28 Score=57.16 Aligned_cols=86 Identities=13% Similarity=0.158 Sum_probs=56.4
Q ss_pred HHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCC-CCCCcc-cccCCCCC---CCCCC--CcCCCCCcHHHHHHHHHH
Q psy9003 1039 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFD-GTQACF-FHDGPRGT---HPLWD--SRLFNYSEIEVLRFLLSN 1111 (1276)
Q Consensus 1039 fK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~-g~~~~Y-y~~~~~g~---~~~W~--g~~LN~~np~Vr~~Iids 1111 (1276)
.++||+++|++|++|++=+.+- ...+.+ .|. +....| +.....+. ...|. +.-+|+.||+++++..+.
T Consensus 72 p~~mi~~L~~~G~k~~~~v~P~-v~~~~~----~y~e~~~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~ 146 (317)
T cd06598 72 PAGMIADLAKKGVKTIVITEPF-VLKNSK----NWGEAVKAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDN 146 (317)
T ss_pred HHHHHHHHHHcCCcEEEEEcCc-ccCCch----hHHHHHhCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHH
Confidence 4689999999999999987532 222211 111 111233 33332222 12333 456899999999999999
Q ss_pred HHHHHHhCCCcEEccCCcc
Q psy9003 1112 LRWYLDEYQFDGFRFDGVT 1130 (1276)
Q Consensus 1112 l~~Wv~eygVDGFRfD~a~ 1130 (1276)
++.. .+.|||||-+|.-.
T Consensus 147 ~~~~-~~~Gvdg~w~D~~E 164 (317)
T cd06598 147 YKKL-IDQGVTGWWGDLGE 164 (317)
T ss_pred HHHh-hhCCccEEEecCCC
Confidence 9887 55899999999743
No 202
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=91.90 E-value=0.086 Score=63.53 Aligned_cols=91 Identities=23% Similarity=0.442 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCC-CCCCcccccCCCCC---CCCCC--CcCCCCCcHHHHHHHHHH
Q psy9003 1038 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFD-GTQACFFHDGPRGT---HPLWD--SRLFNYSEIEVLRFLLSN 1111 (1276)
Q Consensus 1038 EfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~-g~~~~Yy~~~~~g~---~~~W~--g~~LN~~np~Vr~~Iids 1111 (1276)
++++|++.+|++|++|++-+.+. ...... ....|+ +....|+-.+++|. ...|. +..+|+.||+++++..+.
T Consensus 84 d~~~~~~~l~~~G~~~~~~~~P~-v~~~~~-~~~~~~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~ 161 (441)
T PF01055_consen 84 DPKQMIDELHDQGIKVVLWVHPF-VSNDSP-DYENYDEAKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQ 161 (441)
T ss_dssp THHHHHHHHHHTT-EEEEEEESE-EETTTT-B-HHHHHHHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHH
T ss_pred chHHHHHhHhhCCcEEEEEeecc-cCCCCC-cchhhhhHhhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHH
Confidence 67899999999999999988874 332211 000111 11123444344431 12254 467899999999999999
Q ss_pred HHHHHHhCCCcEEccCCcc
Q psy9003 1112 LRWYLDEYQFDGFRFDGVT 1130 (1276)
Q Consensus 1112 l~~Wv~eygVDGFRfD~a~ 1130 (1276)
++..++.+|||||-+|...
T Consensus 162 ~~~~~~~~Gvdg~w~D~~E 180 (441)
T PF01055_consen 162 LKELLDDYGVDGWWLDFGE 180 (441)
T ss_dssp HHHHHTTST-SEEEEESTT
T ss_pred HHHHHhccCCceEEeecCC
Confidence 9999998999999999854
No 203
>PRK09505 malS alpha-amylase; Reviewed
Probab=91.50 E-value=0.2 Score=64.10 Aligned_cols=17 Identities=18% Similarity=0.153 Sum_probs=14.6
Q ss_pred ChHHHHHHHHHHHHhcCc
Q psy9003 143 GTPEQLKYLVDECHKAGL 160 (1276)
Q Consensus 143 ~y~e~a~~li~y~~~~~y 160 (1276)
+++.|.+.| ||+++||+
T Consensus 228 dl~Gi~~kL-dyl~~LGv 244 (683)
T PRK09505 228 DLRGLTEKL-DYLQQLGV 244 (683)
T ss_pred CHHHHHHhh-HHHHHcCC
Confidence 589999886 99999987
No 204
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=91.19 E-value=0.24 Score=63.15 Aligned_cols=90 Identities=14% Similarity=0.023 Sum_probs=70.4
Q ss_pred HHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhh
Q psy9003 511 YLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 590 (1276)
Q Consensus 511 ~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~ 590 (1276)
.+.+....|...|+++.+++|+..++++|.-+. ..-|-.|.|+..|+.+.+++|++.++++|.....- -|
T Consensus 81 ~~~~~L~~aa~~G~~~~vk~LL~~Gadin~~d~-----~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G-----~T 150 (664)
T PTZ00322 81 MLTVELCQLAASGDAVGARILLTGGADPNCRDY-----DGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDG-----KT 150 (664)
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHCCCCCCCcCC-----CCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCC-----CC
Confidence 344556677889999999999999888875444 34466677779999999999999999998443322 46
Q ss_pred hhcccccCCCHHHHHHHHhh
Q psy9003 591 ECHKAGLFGTPEQLKYLVDE 610 (1276)
Q Consensus 591 ~~~~~~~~~~~e~~~~l~~~ 610 (1276)
..+-|...|..+.+++|++.
T Consensus 151 pLh~A~~~g~~~iv~~Ll~~ 170 (664)
T PTZ00322 151 PLELAEENGFREVVQLLSRH 170 (664)
T ss_pred HHHHHHHCCcHHHHHHHHhC
Confidence 66667789999999999987
No 205
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=91.09 E-value=0.82 Score=54.31 Aligned_cols=85 Identities=13% Similarity=0.026 Sum_probs=58.6
Q ss_pred HHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHHhC
Q psy9003 1040 KYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEY 1119 (1276)
Q Consensus 1040 K~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~ey 1119 (1276)
++++..+|++|++|++..-+. .-...+|..|+.+++++.-++++|
T Consensus 67 ~~~~~~A~~~~v~v~~~~~~~-----------------------------------~~~l~~~~~R~~fi~siv~~~~~~ 111 (358)
T cd02875 67 DELLCYAHSKGVRLVLKGDVP-----------------------------------LEQISNPTYRTQWIQQKVELAKSQ 111 (358)
T ss_pred HHHHHHHHHcCCEEEEECccC-----------------------------------HHHcCCHHHHHHHHHHHHHHHHHh
Confidence 489999999999999741000 001357889999999999999999
Q ss_pred CCcEEccCCccccccccCCCCCCCCCCCccccCCCCCch-HHHHHHHHHHHHHhhCCCe
Q psy9003 1120 QFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTD-ALIYLMVANKFLHDKYPEI 1177 (1276)
Q Consensus 1120 gVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~-a~~Fl~el~~~Vr~~~Pdv 1177 (1276)
|.||+-+|--.-. .. ...+.+ -..|++++++.+++..+..
T Consensus 112 gfDGIdIDwE~p~-------------~~-----~~~d~~~~t~llkelr~~l~~~~~~~ 152 (358)
T cd02875 112 FMDGINIDIEQPI-------------TK-----GSPEYYALTELVKETTKAFKKENPGY 152 (358)
T ss_pred CCCeEEEcccCCC-------------CC-----CcchHHHHHHHHHHHHHHHhhcCCCc
Confidence 9999999952211 00 011222 2468999999998776553
No 206
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=90.64 E-value=0.45 Score=54.80 Aligned_cols=84 Identities=14% Similarity=0.183 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHH
Q psy9003 1038 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLD 1117 (1276)
Q Consensus 1038 EfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~ 1117 (1276)
+.++||+++|++|++|++-+.+........ ..|.. +..........-....+|+.||+.++...+.+..-+.
T Consensus 75 dp~~mi~~Lh~~G~k~v~~v~P~~~~~~~~---~~y~~-----~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~ 146 (292)
T cd06595 75 DPEKLLQDLHDRGLKVTLNLHPADGIRAHE---DQYPE-----MAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLE 146 (292)
T ss_pred CHHHHHHHHHHCCCEEEEEeCCCcccCCCc---HHHHH-----HHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHH
Confidence 447999999999999999886643111100 00100 1110000000001135799999999987777776677
Q ss_pred hCCCcEEccCCc
Q psy9003 1118 EYQFDGFRFDGV 1129 (1276)
Q Consensus 1118 eygVDGFRfD~a 1129 (1276)
++|||||-.|+-
T Consensus 147 ~~Gidg~W~D~~ 158 (292)
T cd06595 147 KQGVDFWWLDWQ 158 (292)
T ss_pred hcCCcEEEecCC
Confidence 799999999953
No 207
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=90.50 E-value=0.13 Score=39.89 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.4
Q ss_pred ccchhccccCCHhHHHhhcccccc
Q psy9003 419 DECHKAGLFGTPEQLKYLVDECHK 442 (1276)
Q Consensus 419 t~lh~a~~~~~~~~~~yli~~~~~ 442 (1276)
||||.|+.+|+.+++++||..+-.
T Consensus 4 TpLh~A~~~~~~~~v~~Ll~~ga~ 27 (33)
T PF00023_consen 4 TPLHYAAQRGHPDIVKLLLKHGAD 27 (33)
T ss_dssp BHHHHHHHTTCHHHHHHHHHTTSC
T ss_pred cHHHHHHHHHHHHHHHHHHHCcCC
Confidence 999999999999999999995443
No 208
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=90.43 E-value=0.35 Score=50.02 Aligned_cols=122 Identities=21% Similarity=0.126 Sum_probs=95.1
Q ss_pred hhhhcccccCCChhhhhhhhhhhhhhccCCCHHHHHHHhhhhcccccCCC-----HHHHHHHHhhhh--hcC-CCCCcch
Q psy9003 475 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT-----PEQLKYLVDECH--KAG-LFGTPEQ 546 (1276)
Q Consensus 475 v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~~~~~~~~~t~~~~a~~~g~-----~e~~~~lv~~~~--~~~-~~~t~~~ 546 (1276)
.+..|.+...+..+.+++|+....+++.+.. ...|..+-|..+|+ ++++++|++.++ +++ ..+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~--- 145 (235)
T COG0666 74 RLPLHSAASKGDDKIVKLLLASGADVNAKDA-----DGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE--- 145 (235)
T ss_pred cCHHHHHHHcCcHHHHHHHHHcCCCcccccC-----CCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCC---
Confidence 5777888888888888899998888876664 34677777777888 999999999999 454 3344
Q ss_pred hhhhhhhhhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhh
Q psy9003 547 LKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 611 (1276)
Q Consensus 547 l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~ 611 (1276)
...|.++.|..+|..+.+++|.+.++.++.. -.+--|...-|...|.++.++.|....
T Consensus 146 --~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~-----~~~g~t~l~~a~~~~~~~~~~~l~~~~ 203 (235)
T COG0666 146 --DGNTPLHWAALNGDADIVELLLEAGADPNSR-----NSYGVTALDPAAKNGRIELVKLLLDKG 203 (235)
T ss_pred --CCCchhHHHHHcCchHHHHHHHhcCCCCccc-----ccCCCcchhhhcccchHHHHHHHHhcC
Confidence 5677888888999999999999998888843 112235555666999999999999865
No 209
>PLN02635 disproportionating enzyme
Probab=90.28 E-value=1 Score=56.24 Aligned_cols=139 Identities=17% Similarity=0.210 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEecc--ccCCcccCCC--cCC---------CCCCCcccccCCCCCCCCCCCcCCCCCcH
Q psy9003 1036 PEQLKYLVDECHKAGLYVLLDVVHS--HASKNVLDGL--NEF---------DGTQACFFHDGPRGTHPLWDSRLFNYSEI 1102 (1276)
Q Consensus 1036 ~eEfK~LV~alHk~GI~VILDvV~N--Ht~~~~~~~~--~~f---------~g~~~~Yy~~~~~g~~~~W~g~~LN~~np 1102 (1276)
-++++++-+.|+++||++|-|+.+- +-+.+..... ... -|..|+||... -.+|+.|.+|+..-
T Consensus 223 ~~Qw~~l~~yA~~~Gi~L~gDlpi~Va~dSaDvWa~~~lF~ld~~g~p~~~aGaPPD~Fs~~----GQ~WG~P~y~w~~l 298 (538)
T PLN02635 223 QRQWQAVRSYANEKGISIIGDMPIYVGGHSADVWANRKLFLLNKTGFPLLVSGVPPDAFSET----GQLWGSPLYDWKAM 298 (538)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeecccCCCcHHHhcCHHhhcCCCCCCcceeeeCCCCcCCcc----cccCCCcCcCHHHH
Confidence 3567888999999999999999953 3333321111 111 24456777542 34788777766431
Q ss_pred --HHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCC-CCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEE
Q psy9003 1103 --EVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFS-GHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIIT 1179 (1276)
Q Consensus 1103 --~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~-~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~Pdvil 1179 (1276)
.--+..++-+++=++ .+|+.|+|-...+.+. +..+ +.....-|.-+..+..+++. .+.+..+++.+
T Consensus 299 ~~~gy~ww~~Rlr~~~~--~~d~lRIDHf~Gf~r~-----W~IP~g~~ta~~G~wv~~Pg~~l~~----~l~~~~~~~~v 367 (538)
T PLN02635 299 AKDGYSWWAGRMRRALE--LYDEFRIDHFRGFAGY-----WAVPADAKTAMNGRWKVGPGKSFFD----AIKKAVGKIDI 367 (538)
T ss_pred HhcCcHHHHHHHHHHHH--hCCeEEecchhhhhee-----eeccCCCCCCCCCeeeeCCHHHHHH----HHHHHcCCCCE
Confidence 122356666666666 6888999965443211 0000 00001111112223334443 45667789999
Q ss_pred EEEccCCCCC
Q psy9003 1180 IAEDVSGMPA 1189 (1276)
Q Consensus 1180 IAE~~s~~p~ 1189 (1276)
|||+.+.-|.
T Consensus 368 IaEDLG~I~~ 377 (538)
T PLN02635 368 IAEDLGVITE 377 (538)
T ss_pred EEeeCCCCCH
Confidence 9998776554
No 210
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=90.17 E-value=0.41 Score=62.08 Aligned_cols=88 Identities=18% Similarity=0.328 Sum_probs=59.7
Q ss_pred HHHHHHHHHcCCEEEEEEeccccCCcccCCCcCC-CCCCCcccccCCCCCC---CCCC--CcCCCCCcHHHHHHHHHHHH
Q psy9003 1040 KYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-DGTQACFFHDGPRGTH---PLWD--SRLFNYSEIEVLRFLLSNLR 1113 (1276)
Q Consensus 1040 K~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f-~g~~~~Yy~~~~~g~~---~~W~--g~~LN~~np~Vr~~Iidsl~ 1113 (1276)
|+||+.+|++||++|.=+.+.=..+. + .| ......||..+++|.. ..|. +.-+||.||++|++..+...
T Consensus 324 k~mi~~l~~~Gikl~~~i~P~i~~d~-~----~~~e~~~~Gy~~k~~~g~~~~~~~w~~~~a~~DFtnp~~r~Ww~~~~~ 398 (772)
T COG1501 324 KQMIAELHEKGIKLIVIINPYIKQDS-P----LFKEAIEKGYFVKDPDGEIYQADFWPGNSAFPDFTNPDAREWWASDKK 398 (772)
T ss_pred HHHHHHHHhcCceEEEEeccccccCC-c----hHHHHHHCCeEEECCCCCEeeecccCCcccccCCCCHHHHHHHHHHHH
Confidence 39999999999999987765532222 1 11 1222456666666553 3444 46789999999999996444
Q ss_pred HHHHhCCCcEEccCCcccc
Q psy9003 1114 WYLDEYQFDGFRFDGVTSM 1132 (1276)
Q Consensus 1114 ~Wv~eygVDGFRfD~a~~L 1132 (1276)
.-+.++|||||-.|+-.-.
T Consensus 399 ~~l~d~Gv~g~W~D~nEp~ 417 (772)
T COG1501 399 KNLLDLGVDGFWNDMNEPE 417 (772)
T ss_pred hHHHhcCccEEEccCCCCc
Confidence 4344489999999975543
No 211
>KOG0506|consensus
Probab=89.94 E-value=0.27 Score=59.12 Aligned_cols=82 Identities=18% Similarity=0.066 Sum_probs=60.5
Q ss_pred ccccCCChhhhHHhhhhhccccCCCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccc
Q psy9003 347 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 426 (1276)
Q Consensus 347 ~a~~~g~ie~~~yLi~~~h~~~~~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~ 426 (1276)
.|...|-+.-++-+-=-++...-...+ ..|-.|-|+..|++++||||||.|..+|-.-+.=+. |||..|-.
T Consensus 512 ~aa~~GD~~alrRf~l~g~D~~~~DyD-----~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~r----tPlDdA~~ 582 (622)
T KOG0506|consen 512 YAAKNGDLSALRRFALQGMDLETKDYD-----DRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGR----TPLDDAKH 582 (622)
T ss_pred hhhhcCCHHHHHHHHHhcccccccccc-----cchhheeecccCceeHHHHHHHHHcCCCChhhccCC----CcchHhHh
Confidence 444556666666554444433333223 245566677789999999999999999988887788 99999999
Q ss_pred cCCHhHHHhhc
Q psy9003 427 FGTPEQLKYLV 437 (1276)
Q Consensus 427 ~~~~~~~~yli 437 (1276)
.+|.+|+|+|-
T Consensus 583 F~h~~v~k~L~ 593 (622)
T KOG0506|consen 583 FKHKEVVKLLE 593 (622)
T ss_pred cCcHHHHHHHH
Confidence 99999999874
No 212
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=89.67 E-value=1.3 Score=54.87 Aligned_cols=143 Identities=17% Similarity=0.238 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEeccccCCcc-cCC-CcCC-----------CCCCCcccccCCCCCCCCCCCcCCCCCcH
Q psy9003 1036 PEQLKYLVDECHKAGLYVLLDVVHSHASKNV-LDG-LNEF-----------DGTQACFFHDGPRGTHPLWDSRLFNYSEI 1102 (1276)
Q Consensus 1036 ~eEfK~LV~alHk~GI~VILDvV~NHt~~~~-~~~-~~~f-----------~g~~~~Yy~~~~~g~~~~W~g~~LN~~np 1102 (1276)
-++++++.+.|+++||++|.|+.+.=...+. .|. ...| -|..|++|.. . -.+|+.|.+|+..-
T Consensus 197 ~~Q~~~~~~yA~~~Gi~L~gDLpigV~~dsaDvWa~~~lF~l~~~~~p~~vaGaPPD~Fs~--~--GQ~WG~P~y~w~~l 272 (497)
T PRK14508 197 FRQWKALKAYANDKGIEIIGDLPIYVAYDSADVWANPELFKLDEDGKPTVVAGVPPDYFSE--T--GQLWGNPVYNWDAL 272 (497)
T ss_pred HHHHHHHHHHHHHCCCEEEEeeecccCCCCHHHHcChhhhcCCCCCCcceeeeCCCCCCCc--c--cCcCCCCCcCHHHH
Confidence 4678889999999999999999875222111 111 1111 2444666643 2 24788777766531
Q ss_pred H--HHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCC-CCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEE
Q psy9003 1103 E--VLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFS-GHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIIT 1179 (1276)
Q Consensus 1103 ~--Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~-~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~Pdvil 1179 (1276)
. --+..++-+++=++ .+|++|+|-+..+.+. +..+ +......|.-+..+..+++..+. .+.+++.+
T Consensus 273 ~~~gy~ww~~rlr~~~~--~~~~lRIDH~~Gf~r~-----W~IP~~~~~a~~G~~v~~p~~~l~~~l~----~e~~~~~v 341 (497)
T PRK14508 273 RKDGYRWWIERLRRSFK--LYDIVRIDHFRGFEAY-----WEIPAGEKTAINGRWVPGPGKDLFEAVK----EELGDLPI 341 (497)
T ss_pred HhcCcHHHHHHHHHHHH--hCCeEEecchhhhcee-----eeecCCCCCCCCCeeecCCHHHHHHHHH----HHhCCCCE
Confidence 1 12346666666666 6888999965544211 0000 00001111112223334554443 44488999
Q ss_pred EEEccCCCCCCccc
Q psy9003 1180 IAEDVSGMPASCRP 1193 (1276)
Q Consensus 1180 IAE~~s~~p~~~~p 1193 (1276)
|||+.+.-|.-.+.
T Consensus 342 igEDLG~vp~~V~~ 355 (497)
T PRK14508 342 IAEDLGVITPDVEE 355 (497)
T ss_pred EEeECCCCCHHHHH
Confidence 99998776654433
No 213
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=89.63 E-value=2.2 Score=54.65 Aligned_cols=79 Identities=16% Similarity=0.069 Sum_probs=51.3
Q ss_pred HHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccc--cCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHHhCCCcE
Q psy9003 1046 CHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFH--DGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDG 1123 (1276)
Q Consensus 1046 lHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~--~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~eygVDG 1123 (1276)
+|++|++|..-+-+=-..-... . .. ...+. .++...++.|... |+...|+||+.|.+...-.++.|.|||
T Consensus 390 ~~r~~v~v~AWmp~~~~~~~~~--~----~~-~~~~~~~~~~~~~~~~~~~r-l~P~~pe~r~~i~~i~~dla~~~~~dG 461 (671)
T PRK14582 390 RTRAGVNVYAWMPVLSFDLDPT--L----PR-VKRLDTGEGKAQIHPEQYRR-LSPFDDRVRAQVGMLYEDLAGHAAFDG 461 (671)
T ss_pred HHhhCCEEEEeccceeeccCCC--c----ch-hhhccccCCccccCCCCCcC-CCCCCHHHHHHHHHHHHHHHHhCCCce
Confidence 8999999976654332211000 0 00 01111 1122235567554 999999999999999999999999999
Q ss_pred EccCCcccc
Q psy9003 1124 FRFDGVTSM 1132 (1276)
Q Consensus 1124 FRfD~a~~L 1132 (1276)
.-||-=..+
T Consensus 462 ilf~Dd~~l 470 (671)
T PRK14582 462 ILFHDDAVL 470 (671)
T ss_pred EEecccccc
Confidence 999865444
No 214
>KOG3625|consensus
Probab=89.47 E-value=0.5 Score=60.58 Aligned_cols=34 Identities=24% Similarity=0.272 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHH-cCCEEEEEEeccccCCcccC
Q psy9003 1035 TPEQLKYLVDECHK-AGLYVLLDVVHSHASKNVLD 1068 (1276)
Q Consensus 1035 t~eEfK~LV~alHk-~GI~VILDvV~NHt~~~~~~ 1068 (1276)
+.+|.++||+.||+ -||--|-|+|+|||+.+..|
T Consensus 194 s~eDV~~lV~~l~rewnvlsi~DvV~NHtAnns~W 228 (1521)
T KOG3625|consen 194 SFEDVGQLVEKLKREWNVLSITDVVYNHTANNSKW 228 (1521)
T ss_pred CHHHHHHHHHHHHhhcCeeeeehhhhhccccCCch
Confidence 67999999999995 78999999999999998755
No 215
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=89.17 E-value=0.46 Score=55.82 Aligned_cols=89 Identities=9% Similarity=0.020 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCC-CCCCCcccccCCCCC---CCCCCC--cCCCCCcHHHHHHHHHH
Q psy9003 1038 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-DGTQACFFHDGPRGT---HPLWDS--RLFNYSEIEVLRFLLSN 1111 (1276)
Q Consensus 1038 EfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f-~g~~~~Yy~~~~~g~---~~~W~g--~~LN~~np~Vr~~Iids 1111 (1276)
+.++||+++|++|++|++-+.+--..... ...| .+....||..+++|. ...|.+ ..+|+.||+++++..+.
T Consensus 65 dp~~mi~~L~~~G~k~~~~~~P~v~~~~~---~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~ 141 (339)
T cd06603 65 DPEKMQEKLASKGRKLVTIVDPHIKRDDG---YYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASL 141 (339)
T ss_pred CHHHHHHHHHHCCCEEEEEecCceecCCC---CHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHH
Confidence 44789999999999999987644221110 0011 112234554444432 123443 46899999999999999
Q ss_pred HHHHHH--hCCCcEEccCCc
Q psy9003 1112 LRWYLD--EYQFDGFRFDGV 1129 (1276)
Q Consensus 1112 l~~Wv~--eygVDGFRfD~a 1129 (1276)
++..+. ..++|||-+|+.
T Consensus 142 ~~~~~~~~~~g~~g~w~D~~ 161 (339)
T cd06603 142 FSYDKYKGSTENLYIWNDMN 161 (339)
T ss_pred HHHHhhcccCCCceEEeccC
Confidence 998876 469999999964
No 216
>KOG0502|consensus
Probab=88.85 E-value=0.97 Score=50.26 Aligned_cols=230 Identities=15% Similarity=-0.006 Sum_probs=138.8
Q ss_pred CCChhhhHHhhhhhccccC-CCChhhHHHHHhhhcccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCC
Q psy9003 351 FGTPEQLKYLVDECHKAGL-FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT 429 (1276)
Q Consensus 351 ~g~ie~~~yLi~~~h~~~~-~~~~e~~~~~~~~~~~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~ 429 (1276)
.|.++--..|+++|..--. ++.. .++-+..+|..|+.+.++--|-..+..++++|. ..+|.|+-.+|
T Consensus 41 m~~t~p~~~l~~~~s~~~~~lge~--------~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~----~~~~v~ap~~s 108 (296)
T KOG0502|consen 41 MGTTEPRCALTAEISALRNALGES--------LLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGW----SALLVAAPCGS 108 (296)
T ss_pred ccccchhHHHHHHHHHHHHhcCCc--------ccchhhhcCCcHHHHHhhccCCCCCCCCCchhh----hhhhhcCCCCC
Confidence 3456666677777762221 1111 122333478899999999999999999999998 88999998888
Q ss_pred HhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCCC--HH
Q psy9003 430 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGT--PE 507 (1276)
Q Consensus 430 ~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~~--~~ 507 (1276)
++.+.-+|++.+--.--.... --+.-=|+-|| +|-..-..-|.++| +
T Consensus 109 ~~k~sttltN~~rgnevs~~p-----------------------------~s~~slsVhql-~L~~~~~~~~n~VN~~D- 157 (296)
T KOG0502|consen 109 VDKVSTTLTNGARGNEVSLMP-----------------------------WSPLSLSVHQL-HLDVVDLLVNNKVNACD- 157 (296)
T ss_pred cceeeeeecccccCCcccccc-----------------------------CChhhHHHHHH-HHHHHHHHhhccccCcc-
Confidence 888888887765321111000 00011112222 22222222222332 1
Q ss_pred HHHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhcc---CCCChhh
Q psy9003 508 QLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG---LFGTPEQ 584 (1276)
Q Consensus 508 ~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~---~~~~~~~ 584 (1276)
|..+|+.--|-.+|.|++|.+|.+-++|--. .-+|.=+...-|+..|=+..+++|.+-.-++| -|..-+|
T Consensus 158 --e~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~-----lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpL 230 (296)
T KOG0502|consen 158 --EFGFTPLIWAAAKGHIPVVQFLLNSGADPDA-----LGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPL 230 (296)
T ss_pred --ccCchHhHHHHhcCchHHHHHHHHcCCChhh-----hhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCcee
Confidence 1346777777789999999999987775332 44577777777888899999999999888888 3444444
Q ss_pred hhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChhhh-hhhHHHhhhccCCCCHHHH
Q psy9003 585 LKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQL-KYLVDECHKAGLFGTPEQL 642 (1276)
Q Consensus 585 ~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 642 (1276)
+- |.+-+++.-++-|+.-+++- |-+++ -|.+--++-|+-+-.+.|+
T Consensus 231 ly--------Avrgnhvkcve~Ll~sGAd~----t~e~dsGy~~mdlAValGyr~Vqqv 277 (296)
T KOG0502|consen 231 LY--------AVRGNHVKCVESLLNSGADV----TQEDDSGYWIMDLAVALGYRIVQQV 277 (296)
T ss_pred ee--------eecCChHHHHHHHHhcCCCc----ccccccCCcHHHHHHHhhhHHHHHH
Confidence 32 22455566677777666554 44433 2444444445544444443
No 217
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=88.33 E-value=0.51 Score=61.58 Aligned_cols=50 Identities=20% Similarity=0.103 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhcccCCCCCeeEeecC---CCeEEEEEcCc----EEEEEeCCCC
Q psy9003 1215 ALFDAAMNTTEERFKWLSADPGYVSTKHE---GDKVIIFERAG----LLFAFNFNGT 1264 (1276)
Q Consensus 1215 ~~F~~~Ln~l~~~~p~L~~~~~~~l~nHD---~~RVlsf~R~~----ll~v~N~~~~ 1264 (1276)
..+.+.+.++|+.+|.|...+.+.....+ .+.|++|.|.. +++|+|-...
T Consensus 767 l~~~~~lL~lRr~~p~Lf~~G~y~pL~~~G~~a~~v~AFaR~~~~~~~vvvv~R~~~ 823 (879)
T PRK14511 767 LLLIARALRLRRDRPELFAGGEYLPLEVSGPHAGHVLAFARGGGGGRALTVAPRLPA 823 (879)
T ss_pred HHHHHHHHHHHHhCHHHhhCCceEEEEecCCCCCcEEEEEEecCCceEEEEeccccc
Confidence 45788999999999988543444444333 56799999943 8888876544
No 218
>KOG0515|consensus
Probab=88.32 E-value=0.36 Score=58.68 Aligned_cols=122 Identities=16% Similarity=0.058 Sum_probs=90.2
Q ss_pred CCChhHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCCh
Q psy9003 389 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP 468 (1276)
Q Consensus 389 ~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~ 468 (1276)
.|-.|+|.-.|-|-. ||..-++||- |.||.|.--||-++||.||+.+-- .|--.+|
T Consensus 560 eGEldlVq~~i~ev~-DpSqpNdEGI----TaLHNAiCaghyeIVkFLi~~gan-------------------VNa~DSd 615 (752)
T KOG0515|consen 560 EGELDLVQRIIYEVT-DPSQPNDEGI----TALHNAICAGHYEIVKFLIEFGAN-------------------VNAADSD 615 (752)
T ss_pred cchHHHHHHHHHhhc-CCCCCCccch----hHHhhhhhcchhHHHHHHHhcCCc-------------------ccCccCC
Confidence 688899888888876 8999999999 999999988999999888875532 2333566
Q ss_pred hhHHHhhhhhcccccCCChhhhhhhhhhhhhhccCC-C-HHHHHHHhhhhcccccCCCHHHHHHHHhhhhhcC-CCCC
Q psy9003 469 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFG-T-PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG-LFGT 543 (1276)
Q Consensus 469 ~~~~~~v~~~~~a~~~~~~e~~~~lv~~~~~~~~~~-~-~~~~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~-~~~t 543 (1276)
. ||..|||..-++....+.||+-++.|---- + .|-..--|.. -+.|=..-++||-|+-.+.| +|..
T Consensus 616 G-----WTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee----~eeGY~~CsqyL~~vqesmG~mN~G 684 (752)
T KOG0515|consen 616 G-----WTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEE----MEEGYDQCSQYLYGVQESMGSMNKG 684 (752)
T ss_pred C-----CchhhhhhhcCchHHHHHHHhccceEEeeecccccchhhhcch----hhhhHHHHHHHHHHHHHhhcccccc
Confidence 7 999999999999999999999887764211 1 1110000222 24677778899999988888 4444
No 219
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=88.16 E-value=0.93 Score=59.94 Aligned_cols=88 Identities=14% Similarity=0.246 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCC-CCCCCcccccCCCCCC---CCCCC--cCCCCCcHHHHHHHHHH
Q psy9003 1038 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-DGTQACFFHDGPRGTH---PLWDS--RLFNYSEIEVLRFLLSN 1111 (1276)
Q Consensus 1038 EfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f-~g~~~~Yy~~~~~g~~---~~W~g--~~LN~~np~Vr~~Iids 1111 (1276)
+.++||+++|++|++++.=+.+ +...+ .+...+ .+....+|..+++|.. ..|.+ .-.||.||.+|++..+.
T Consensus 242 dP~~mv~~Lh~~G~kvv~iidP-gI~~d--~gY~~y~eg~~~~~fvk~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~~~ 318 (978)
T PLN02763 242 DPKGLADDLHSIGFKAIWMLDP-GIKAE--EGYFVYDSGCENDVWIQTADGKPFVGEVWPGPCVFPDFTNKKTRSWWANL 318 (978)
T ss_pred CHHHHHHHHHHCCCEEEEEEcC-CCccC--CCCHHHHhHhhcCeeEECCCCCeeEeeecCCCccccCCCCHHHHHHHHHH
Confidence 4479999999999999775433 22211 011111 1223345544444431 34554 34699999999999999
Q ss_pred HHHHHHhCCCcEEccCCc
Q psy9003 1112 LRWYLDEYQFDGFRFDGV 1129 (1276)
Q Consensus 1112 l~~Wv~eygVDGFRfD~a 1129 (1276)
++.+++ .|||||-+|+-
T Consensus 319 ~k~l~d-~GVDG~W~Dmn 335 (978)
T PLN02763 319 VKDFVS-NGVDGIWNDMN 335 (978)
T ss_pred HHHHhc-CCCcEEEccCC
Confidence 998887 79999999974
No 220
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=87.59 E-value=0.51 Score=61.29 Aligned_cols=49 Identities=16% Similarity=0.102 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhcccCCCCCeeEe-e--cCCCeEEEEEcC----cEEEEEeCCC
Q psy9003 1215 ALFDAAMNTTEERFKWLSADPGYVST-K--HEGDKVIIFERA----GLLFAFNFNG 1263 (1276)
Q Consensus 1215 ~~F~~~Ln~l~~~~p~L~~~~~~~l~-n--HD~~RVlsf~R~----~ll~v~N~~~ 1263 (1276)
..+.+.+.++|+.+|.+-..+.+... . ...+.|++|.|. .+++++|...
T Consensus 714 l~~i~~lL~lRr~~p~lF~~G~y~pL~~~G~~~~~vvaFaR~~~~~~~vvvv~R~~ 769 (825)
T TIGR02401 714 LAVTAAALQLRREHPELFGQGDYQPLEAGGPGAAHVIAFARGTDRQAAIVVVTRLS 769 (825)
T ss_pred HHHHHHHHHHHHhCHHhhhcCCeEEEeccCCCcCcEEEEEEecCCcEEEEEEecch
Confidence 45778899999999964222333322 2 245679999995 4888888654
No 221
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=87.44 E-value=1.5 Score=49.00 Aligned_cols=64 Identities=19% Similarity=0.239 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHH
Q psy9003 1035 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRW 1114 (1276)
Q Consensus 1035 t~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~ 1114 (1276)
+.+++++.|+.+|++|+||++=+-.+|.+... ....+++-++.+.+++.-
T Consensus 49 ~~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~------------------------------~~~~~~~~~~~fa~~l~~ 98 (255)
T cd06542 49 LLTNKETYIRPLQAKGTKVLLSILGNHLGAGF------------------------------ANNLSDAAAKAYAKAIVD 98 (255)
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECCCCCCCCc------------------------------cccCCHHHHHHHHHHHHH
Confidence 46889999999999999999988655433220 011234567777888888
Q ss_pred HHHhCCCcEEccCC
Q psy9003 1115 YLDEYQFDGFRFDG 1128 (1276)
Q Consensus 1115 Wv~eygVDGFRfD~ 1128 (1276)
++++||+||+-+|-
T Consensus 99 ~v~~yglDGiDiD~ 112 (255)
T cd06542 99 TVDKYGLDGVDFDD 112 (255)
T ss_pred HHHHhCCCceEEee
Confidence 89999999999995
No 222
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=87.09 E-value=1.6 Score=51.61 Aligned_cols=66 Identities=15% Similarity=0.116 Sum_probs=48.7
Q ss_pred HHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHHhC
Q psy9003 1040 KYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEY 1119 (1276)
Q Consensus 1040 K~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~ey 1119 (1276)
++||+++|+.|++|++-+.+- ... | ....+.+.-.|+.||++|++..+..+.+.+ .
T Consensus 67 ~~mv~~L~~~G~klv~~i~P~-i~~----------g------------~~~~~~~~~pDftnp~ar~wW~~~~~~l~~-~ 122 (332)
T cd06601 67 KEMFDNLHNKGLKCSTNITPV-ISY----------G------------GGLGSPGLYPDLGRPDVREWWGNQYKYLFD-I 122 (332)
T ss_pred HHHHHHHHHCCCeEEEEecCc-eec----------C------------ccCCCCceeeCCCCHHHHHHHHHHHHHHHh-C
Confidence 689999999999998877533 110 0 001122345689999999999888888777 6
Q ss_pred CCcEEccCCc
Q psy9003 1120 QFDGFRFDGV 1129 (1276)
Q Consensus 1120 gVDGFRfD~a 1129 (1276)
|||||-.|+-
T Consensus 123 Gv~~~W~Dmn 132 (332)
T cd06601 123 GLEFVWQDMT 132 (332)
T ss_pred CCceeecCCC
Confidence 9999999974
No 223
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=86.99 E-value=0.21 Score=43.40 Aligned_cols=35 Identities=17% Similarity=0.145 Sum_probs=21.4
Q ss_pred ccccCCChhHHHHHhhhcccccCCCChhhhhcccccchhc
Q psy9003 385 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 424 (1276)
Q Consensus 385 ~a~~~~~id~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a 424 (1276)
-|...|+.|+|++|+ ...|++-..+.+++ ||+|.|
T Consensus 22 ~A~~~g~~~~v~~Ll-~~g~d~~~~d~~G~----Tpl~~A 56 (56)
T PF13857_consen 22 WAARYGHSEVVRLLL-QNGADPNAKDKDGQ----TPLHYA 56 (56)
T ss_dssp HHHHHT-HHHHHHHH-HCT--TT---TTS------HHHH-
T ss_pred HHHHcCcHHHHHHHH-HCcCCCCCCcCCCC----CHHHhC
Confidence 334468899999999 88999999999999 999987
No 224
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=85.22 E-value=2.1 Score=50.23 Aligned_cols=83 Identities=20% Similarity=0.325 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCC----CcCCCCCcHHHHHHHHHH
Q psy9003 1036 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWD----SRLFNYSEIEVLRFLLSN 1111 (1276)
Q Consensus 1036 ~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~----g~~LN~~np~Vr~~Iids 1111 (1276)
+.++++|++.||++||.+|-=+|.= .+.. +-...+.|.-...+|+ .|. ..-+|..+++||+|+++.
T Consensus 60 i~D~~~l~~~l~e~gIY~IARIv~F---kD~~-----la~~~pe~av~~~~G~--~w~d~~~~~WvnP~~~evw~Y~i~I 129 (316)
T PF13200_consen 60 IKDLKALVKKLKEHGIYPIARIVVF---KDPV-----LAEAHPEWAVKTKDGS--VWRDNEGEAWVNPYSKEVWDYNIDI 129 (316)
T ss_pred ccCHHHHHHHHHHCCCEEEEEEEEe---cChH-----HhhhChhhEEECCCCC--cccCCCCCccCCCCCHHHHHHHHHH
Confidence 5899999999999999999988742 1110 0011122222222222 222 134788899999999999
Q ss_pred HHHHHHhCCCcEEccCCc
Q psy9003 1112 LRWYLDEYQFDGFRFDGV 1129 (1276)
Q Consensus 1112 l~~Wv~eygVDGFRfD~a 1129 (1276)
.+..++ .|+|..-||-+
T Consensus 130 A~Eaa~-~GFdEIqfDYI 146 (316)
T PF13200_consen 130 AKEAAK-LGFDEIQFDYI 146 (316)
T ss_pred HHHHHH-cCCCEEEeeee
Confidence 999887 69999999964
No 225
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=85.02 E-value=4.1 Score=45.81 Aligned_cols=87 Identities=15% Similarity=0.250 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHHH
Q psy9003 1036 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWY 1115 (1276)
Q Consensus 1036 ~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~W 1115 (1276)
..++..+++++|++|++|++=+- ++.... + .--..+|..|+.+++++..+
T Consensus 45 ~~~~~~~~~~~~~~~~kvl~sig-g~~~~~--------------------------~---~~~~~~~~~r~~fi~~lv~~ 94 (253)
T cd06545 45 RSELNSVVNAAHAHNVKILISLA-GGSPPE--------------------------F---TAALNDPAKRKALVDKIINY 94 (253)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEc-CCCCCc--------------------------c---hhhhcCHHHHHHHHHHHHHH
Confidence 45788999999999999998542 211000 0 00235688899999999999
Q ss_pred HHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhh
Q psy9003 1116 LDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDK 1173 (1276)
Q Consensus 1116 v~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~ 1173 (1276)
+++|++||+-+|.-..- . . ...-..|++++++.+++.
T Consensus 95 ~~~~~~DGIdiDwE~~~-------------~-------~-~~~~~~fv~~Lr~~l~~~ 131 (253)
T cd06545 95 VVSYNLDGIDVDLEGPD-------------V-------T-FGDYLVFIRALYAALKKE 131 (253)
T ss_pred HHHhCCCceeEEeeccC-------------c-------c-HhHHHHHHHHHHHHHhhc
Confidence 99999999999952210 0 0 012346899999888754
No 226
>PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria. It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A ....
Probab=84.87 E-value=1.2 Score=41.72 Aligned_cols=48 Identities=21% Similarity=0.273 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhcccCCCCCeeE-e-ecCCCeEEEEEc----CcEEEEEeCCCC
Q psy9003 1217 FDAAMNTTEERFKWLSADPGYVS-T-KHEGDKVIIFER----AGLLFAFNFNGT 1264 (1276)
Q Consensus 1217 F~~~Ln~l~~~~p~L~~~~~~~l-~-nHD~~RVlsf~R----~~ll~v~N~~~~ 1264 (1276)
|++.|+++|+.+|.|..+..-.+ . ..+.+.++.+.| +.+++++||++.
T Consensus 1 ~yr~Li~LRr~~PaL~~~~~~~~~~~~~~~~~l~~~~r~~~~~~l~v~~Nls~~ 54 (89)
T PF11941_consen 1 FYRRLIALRRQHPALRDGDFRFLEVERDAPDALLAFRRTGGGERLLVAFNLSDE 54 (89)
T ss_dssp HHHHHHHHHHHHTHHCCSEEEEEEEEEEEETTEEEEEEEETTEEEEEEEE-SSS
T ss_pred CHHHHHHHHhhCccccCCCcccEEEEecCCCEEEEEEEEcCCceEEEEEecCCC
Confidence 67899999999999987643222 2 244556778888 259999999986
No 227
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=84.76 E-value=0.83 Score=63.32 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=34.3
Q ss_pred CCChHHHHHHHHHHHHhcCc------------------------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 141 LFGTPEQLKYLVDECHKAGL------------------------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 141 ~~~y~e~a~~li~y~~~~~y------------------------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
=+++.. +..++||++++|+ |||.+||+.||++||++||+
T Consensus 754 ~~tf~~-~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~ 822 (1693)
T PRK14507 754 DFTFAD-AEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLG 822 (1693)
T ss_pred CCCHHH-HHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCE
Confidence 357777 4567899999999 99999999999999999998
No 228
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=84.45 E-value=5 Score=47.59 Aligned_cols=119 Identities=19% Similarity=0.145 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHH
Q psy9003 1034 GTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLR 1113 (1276)
Q Consensus 1034 Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~ 1113 (1276)
.+.+...+|.+++++.||+|+||+=|..+..+- +.......|.+.+++--...|.+|-.++|.
T Consensus 55 ~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDP-----------------g~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~ 117 (332)
T PF07745_consen 55 NDLEDVIALAKRAKAAGMKVLLDFHYSDFWADP-----------------GKQNKPAAWANLSFDQLAKAVYDYTKDVLQ 117 (332)
T ss_dssp TSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BT-----------------TB-B--TTCTSSSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCeEEEeecccCCCCCC-----------------CCCCCCccCCCCCHHHHHHHHHHHHHHHHH
Confidence 357888999999999999999999877654431 111123456554443334567788888888
Q ss_pred HHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCch-HHHHHHHHHHHHHhhCCCeEEEE
Q psy9003 1114 WYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTD-ALIYLMVANKFLHDKYPEIITIA 1181 (1276)
Q Consensus 1114 ~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~-a~~Fl~el~~~Vr~~~PdvilIA 1181 (1276)
...+ .|+. .|.+. +... ...|--|+ .+...+.+ -..+++.-.++||+..|++.++-
T Consensus 118 ~l~~-~G~~---pd~VQ-VGNE-in~Gmlwp------~g~~~~~~~~a~ll~ag~~AVr~~~p~~kV~l 174 (332)
T PF07745_consen 118 ALKA-AGVT---PDMVQ-VGNE-INNGMLWP------DGKPSNWDNLAKLLNAGIKAVREVDPNIKVML 174 (332)
T ss_dssp HHHH-TT-----ESEEE-ESSS-GGGESTBT------TTCTT-HHHHHHHHHHHHHHHHTHSSTSEEEE
T ss_pred HHHH-CCCC---ccEEE-eCcc-ccccccCc------CCCccCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 7665 3664 55443 1100 00011111 01112222 24577777899999999976553
No 229
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=83.32 E-value=5.9 Score=51.20 Aligned_cols=141 Identities=16% Similarity=0.118 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHcCC--EEEEEEeccccCCc-ccCC-Cc-----CCCCCCCcccccCCCCCCCCCCCcCCCCCcHH--HH
Q psy9003 1037 EQLKYLVDECHKAGL--YVLLDVVHSHASKN-VLDG-LN-----EFDGTQACFFHDGPRGTHPLWDSRLFNYSEIE--VL 1105 (1276)
Q Consensus 1037 eEfK~LV~alHk~GI--~VILDvV~NHt~~~-~~~~-~~-----~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~--Vr 1105 (1276)
++++++-+.|+++|| ++|-|+.+.=...+ ..|. .. .--|..|++|... -.+|+.+.+|+..-. =-
T Consensus 355 ~Ql~~~~~~A~~~Gm~igL~gDLpvgv~~dsaDvWa~~~~F~l~~~~GaPPD~fs~~----GQ~WG~P~y~w~~l~~~gy 430 (695)
T PRK11052 355 SQFAACWQLSQQLGMPIGLYRDLAVGVAEGGAETWCDRELYCLKASVGAPPDILGPL----GQNWGLPPMDPHVLQARAY 430 (695)
T ss_pred HHHHHHHHHHHHCCCceeEEEeeeceECCCcHHHhCCHHHhcCCCcCCCCCCcCCcc----cccCCCcCcCHHHHHhcCc
Confidence 456778888999999 67999987522221 1221 11 1125556777542 247887777654211 11
Q ss_pred HHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCC-CCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEEEcc
Q psy9003 1106 RFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFS-GHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDV 1184 (1276)
Q Consensus 1106 ~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~-~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIAE~~ 1184 (1276)
+..++.++.-++ +.|++|+|-+..+.+. +..+ |. ....|.-+..+.-.++..+ ++.+..+++.+|||+.
T Consensus 431 ~ww~~rlr~~~~--~~g~lRIDH~~Gl~rl-----W~IP~g~-~a~~G~yv~~P~~~ll~~l--ales~~~~~~vIgEDL 500 (695)
T PRK11052 431 QPFIDLLRANMQ--HCGALRIDHVMSLLRL-----WWIPYGE-TADQGAYVHYPVDDLLAIL--ALESQRHRCMVIGEDL 500 (695)
T ss_pred HHHHHHHHHHHH--hCCEEEecchhhhhee-----eecCCCC-CCCCCeeEeCCHHHHHHHH--HHHHhcCCCCEEEeeC
Confidence 345666666666 6889999966544221 0000 00 0111111112222344332 2356678899999998
Q ss_pred CCCCCCc
Q psy9003 1185 SGMPASC 1191 (1276)
Q Consensus 1185 s~~p~~~ 1191 (1276)
+.-|.-.
T Consensus 501 G~Vp~~V 507 (695)
T PRK11052 501 GTVPVEI 507 (695)
T ss_pred CCCCHHH
Confidence 7665443
No 230
>KOG0512|consensus
Probab=82.62 E-value=1.8 Score=46.88 Aligned_cols=120 Identities=15% Similarity=0.041 Sum_probs=80.0
Q ss_pred ChhhhHHhhhhhcccc-------CCCChhhHHHH--Hh--h---hcccccCCChhHHHHHhhhcccccCCC-Chhhhhcc
Q psy9003 353 TPEQLKYLVDECHKAG-------LFGTPEQLKYL--VD--E---CHKAGLFGTPEQLKYLVDECHKAGLFG-TPEQLKYL 417 (1276)
Q Consensus 353 ~ie~~~yLi~~~h~~~-------~~~~~e~~~~~--~~--~---~~~a~~~~~id~vkyLi~~~h~~~~~~-~~~~~~~~ 417 (1276)
+-+||-.|-+-.|-+| +.+++|+.|.. +. . .-.|...+.+.-|+-|.-|.-- -+++ +..+-
T Consensus 23 ~k~q~e~lr~h~~~~pgmfvS~W~ddsdeleE~dk~me~dp~rl~lwaae~nrl~eV~~lL~e~an-~vNtrD~D~Y--- 98 (228)
T KOG0512|consen 23 HKNQLEELRTHGHLIPGMFVSLWVDDSEELEEQDKNMEKDPIRLLLWAAEKNRLTEVQRLLSEKAN-HVNTRDEDEY--- 98 (228)
T ss_pred HHHHHHHHHhcCcCCCcceeeeecCCcHHHHhhccCcccCHHHHHHHHHhhccHHHHHHHHHhccc-cccccccccc---
Confidence 5677777877888888 25666665553 21 1 1112236788888888766542 2444 55566
Q ss_pred cccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhccCCChhhHHHhhhhhcccccCCChhhhhhhhhhh
Q psy9003 418 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 497 (1276)
Q Consensus 418 vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~e~~~~lv~~~ 497 (1276)
||||.|+.+|+.|+|+-|+-. +-.+-+.|++. ||+.|-|+.=..-|-+-+|..-+
T Consensus 99 -TpLHRAaYn~h~div~~ll~~-gAn~~a~T~~G-----------------------WTPLhSAckWnN~~va~~LLqhg 153 (228)
T KOG0512|consen 99 -TPLHRAAYNGHLDIVHELLLS-GANKEAKTNEG-----------------------WTPLHSACKWNNFEVAGRLLQHG 153 (228)
T ss_pred -cHHHHHHhcCchHHHHHHHHc-cCCcccccccC-----------------------ccchhhhhcccchhHHHHHHhcc
Confidence 999999999999999887633 22334444444 78888888777777777777777
Q ss_pred hhhc
Q psy9003 498 HKAG 501 (1276)
Q Consensus 498 ~~~~ 501 (1276)
+++|
T Consensus 154 aDVn 157 (228)
T KOG0512|consen 154 ADVN 157 (228)
T ss_pred Cccc
Confidence 7766
No 231
>PF13606 Ank_3: Ankyrin repeat
Probab=82.08 E-value=0.65 Score=35.86 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=20.9
Q ss_pred hhhhcccccCCCHHHHHHHHhhhhhcC
Q psy9003 513 VDECHKAGLFGTPEQLKYLVDECHKAG 539 (1276)
Q Consensus 513 ~t~~~~a~~~g~~e~~~~lv~~~~~~~ 539 (1276)
.|+.+.|+..|++|++++|++.+.++|
T Consensus 3 ~T~Lh~A~~~g~~e~v~~Ll~~gadvn 29 (30)
T PF13606_consen 3 NTPLHLAASNGNIEIVKYLLEHGADVN 29 (30)
T ss_pred CCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence 467788888888888888888776665
No 232
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=81.29 E-value=3.8 Score=52.01 Aligned_cols=39 Identities=26% Similarity=0.377 Sum_probs=32.9
Q ss_pred CcCCCCCcHHHHHHHHHHHHHHHH---------hCCCcEEccCCcccc
Q psy9003 1094 SRLFNYSEIEVLRFLLSNLRWYLD---------EYQFDGFRFDGVTSM 1132 (1276)
Q Consensus 1094 g~~LN~~np~Vr~~Iidsl~~Wv~---------eygVDGFRfD~a~~L 1132 (1276)
.+++|-+||.|+..-+.++-|.+. +..+||||+|++..+
T Consensus 143 aNDVDNSNPvVQAEqLNwl~yLmN~GsI~~~d~daNFDgiRVDAvDNV 190 (809)
T PF02324_consen 143 ANDVDNSNPVVQAEQLNWLHYLMNFGSITANDPDANFDGIRVDAVDNV 190 (809)
T ss_dssp SEEE-TTSHHHHHHHHHHHHHHHTHHHHHHS-TTSS--EEEETTGGGS
T ss_pred eccccCCCchhhHHHHHHHHHHhhccccccCCCCCCcccEEeeccccc
Confidence 588999999999999999999887 778999999998877
No 233
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=80.76 E-value=5.2 Score=38.13 Aligned_cols=62 Identities=15% Similarity=0.283 Sum_probs=40.5
Q ss_pred eEEEEEcc--CCcEEEEEc---cCCCCccc-cccceecCCCeEEEEcCCCCCCCcccCcccEEEEEEEEeCCee
Q psy9003 782 CHKAGLLC--FMHVVCAAG---DFNNWNRE-EFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHL 849 (1276)
Q Consensus 782 a~FalwAP--~A~~VsLvG---DFN~wd~~-~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~~dG~~ 849 (1276)
++|.+-.. ..++|.|+| ++++|++. .++|...+.+.|++.+.-. .+ ....|+|.+...+|..
T Consensus 3 v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~~~~~W~~~v~l~-~~-----~~~eYKy~~~~~~~~~ 70 (95)
T cd05808 3 VTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAATYPVWSGTVDLP-AG-----TAIEYKYIKKDGSGTV 70 (95)
T ss_pred EEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCCCCCCEEEEEEeC-CC-----CeEEEEEEEECCCCcE
Confidence 34555443 457889998 47899864 5799877889998877522 12 1267888765444443
No 234
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=79.87 E-value=1.5 Score=53.12 Aligned_cols=50 Identities=16% Similarity=0.233 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHh-cccCCCCCeeEeecCCCeEEEEEcCc----EEEEEeCCCC
Q psy9003 1215 ALFDAAMNTTEERF-KWLSADPGYVSTKHEGDKVIIFERAG----LLFAFNFNGT 1264 (1276)
Q Consensus 1215 ~~F~~~Ln~l~~~~-p~L~~~~~~~l~nHD~~RVlsf~R~~----ll~v~N~~~~ 1264 (1276)
..+.+.+.++|+.. +.+..+.......-+.+.+++|.|.. +++++|++..
T Consensus 432 ~~~~~~l~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~ 486 (505)
T COG0366 432 FNFYRRLIALRKQHSALLANGEDFVLLADDDPSLLAFLRESGGETLLVVNNLSEE 486 (505)
T ss_pred HHHHHHHHHHHHhhhhhhcCcccceecCCCCceEEEEecccCCceEEEEEcCCCc
Confidence 56788888887766 44344445566666677899999953 8999999975
No 235
>PLN02950 4-alpha-glucanotransferase
Probab=79.80 E-value=33 Score=45.94 Aligned_cols=141 Identities=13% Similarity=0.106 Sum_probs=78.3
Q ss_pred eEEEEEccC---CcEEEEEcc---CCCCccc-cccceecCCCeEEEEcCCCCCCCcccCcccEEEEEEEEeCCeeeeecC
Q psy9003 782 CHKAGLLCF---MHVVCAAGD---FNNWNRE-EFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLS 854 (1276)
Q Consensus 782 a~FalwAP~---A~~VsLvGD---FN~wd~~-~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~~dG~~~~~~D 854 (1276)
++|.+-+|+ .++|.|+|+ +.+|++. ..+|.......|++.+.-. .+ ..-..|+|.+...+|...+-.+
T Consensus 155 V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~~~~p~W~~~v~lp-~~----~~~~EYKyv~~~~~g~v~WE~g 229 (909)
T PLN02950 155 VRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNYTGDSIWEADCLVP-KS----DFPIKYKYALQTAEGLVSLELG 229 (909)
T ss_pred EEEEEecCccCCCCeEEEEechhhcCCCCcccccccccCCCCcEEEEEEec-CC----CceEEEEEEEEcCCCceEEeeC
Confidence 689998884 678888864 4589854 4677766788999988522 11 0125899998765665444333
Q ss_pred CcceEeecCCCCCccccceeeCCCCCCCCCcCCCCCCCCCCceEEEEecCCcccc--CccCcHHHHHHhhhhHHHHcCCC
Q psy9003 855 PWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQE--QKCASYEDFVRVVIPRIVKQGMA 932 (1276)
Q Consensus 855 PYAkav~~~~~~s~v~~~~~~~p~~~~~y~W~~~rp~~~~d~vIYElHVr~ft~~--~~~Gtf~gl~ek~LdyLK~LGVn 932 (1276)
+--. +......+. ....+..+. ..+. .+. ++.+=| -+|+-+.... -+.|+|.++.+ .++.+++.|.+
T Consensus 230 ~NR~-~~~p~~~~~-~~~~~~~~~----~~~~--~~~-~R~~Gi-~~~l~SLrS~~s~GIGDf~dl~~-~id~~a~~G~~ 298 (909)
T PLN02950 230 VNRE-LSLDSSSGK-PPSYIVASD----GAFR--EMP-WRGAGV-AVPVFSIRSEEDVGVGEFLDLKL-LVDWAVKSGLH 298 (909)
T ss_pred CCce-eecCcccCC-ceEEEeccc----cccc--CCC-ccceEE-EEecccCCCCCCCCeeCHHHHHH-HHHHHHHcCCC
Confidence 3322 222111100 001111111 0011 011 111111 1233222222 26799988775 79999999999
Q ss_pred CCccceeecc
Q psy9003 933 IPDKWIELLK 942 (1276)
Q Consensus 933 a~d~wV~LmP 942 (1276)
. |||+|
T Consensus 299 ~----~QilP 304 (909)
T PLN02950 299 L----VQLLP 304 (909)
T ss_pred E----EEECC
Confidence 9 99994
No 236
>KOG0782|consensus
Probab=79.29 E-value=0.77 Score=56.13 Aligned_cols=86 Identities=23% Similarity=0.181 Sum_probs=48.0
Q ss_pred hcccccCCChHHHHHHHhhhhccCCCCCccccchhhhhhcccccCCCHHHHHHHhhhhhccCCCCcccchhhhhcccccc
Q psy9003 269 CHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 348 (1276)
Q Consensus 269 ~h~~~~~~~ie~~~yli~e~~~~~~~~~~~~~t~~~~~~~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~~~~~~~a 348 (1276)
.|.|...|+-|||||++| |.-+-..+.+ +.++-|++|||+-++.--+-.|||+..-..- -||.-. -|+-..|
T Consensus 903 lh~a~~tg~~eivkyild--h~p~elld~~-de~get~lhkaa~~~~r~vc~~lvdagasl~--ktd~kg---~tp~era 974 (1004)
T KOG0782|consen 903 LHYAAKTGNGEIVKYILD--HGPSELLDMA-DETGETALHKAACQRNRAVCQLLVDAGASLR--KTDSKG---KTPQERA 974 (1004)
T ss_pred HHHHHhcCChHHHHHHHh--cCCHHHHHHH-hhhhhHHHHHHHHhcchHHHHHHHhcchhhe--ecccCC---CChHHHH
Confidence 356666778888888888 4332111212 2456667788888888877778876543221 122111 2333344
Q ss_pred ccCCChhhhHHhhh
Q psy9003 349 GLFGTPEQLKYLVD 362 (1276)
Q Consensus 349 ~~~g~ie~~~yLi~ 362 (1276)
-.+|..|..+||-+
T Consensus 975 qqa~d~dlaayle~ 988 (1004)
T KOG0782|consen 975 QQAGDPDLAAYLES 988 (1004)
T ss_pred HhcCCchHHHHHhh
Confidence 44566666666643
No 237
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=78.39 E-value=7.3 Score=45.42 Aligned_cols=61 Identities=20% Similarity=0.364 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHH
Q psy9003 1035 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRW 1114 (1276)
Q Consensus 1035 t~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~ 1114 (1276)
+..++++-|+.||++|++|++=+ +.. .+ ......+.-|+.+.+++..
T Consensus 58 ~~~~~~~~i~~~q~~G~KVllSi-----GG~--------~~--------------------~~~~~~~~~~~~fa~sl~~ 104 (312)
T cd02871 58 SPAEFKADIKALQAKGKKVLISI-----GGA--------NG--------------------HVDLNHTAQEDNFVDSIVA 104 (312)
T ss_pred ChHHHHHHHHHHHHCCCEEEEEE-----eCC--------CC--------------------ccccCCHHHHHHHHHHHHH
Confidence 56789999999999999999875 110 00 0113456778889999999
Q ss_pred HHHhCCCcEEccCC
Q psy9003 1115 YLDEYQFDGFRFDG 1128 (1276)
Q Consensus 1115 Wv~eygVDGFRfD~ 1128 (1276)
++++|++||+-||-
T Consensus 105 ~~~~~g~DGiDiD~ 118 (312)
T cd02871 105 IIKEYGFDGLDIDL 118 (312)
T ss_pred HHHHhCCCeEEEec
Confidence 99999999999995
No 238
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=77.56 E-value=5.8 Score=49.62 Aligned_cols=140 Identities=14% Similarity=0.150 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEeccccCCcc-cCC-C--c--------C-CCCCCCcccccCCCCCCCCCCCcCCCCCcH
Q psy9003 1036 PEQLKYLVDECHKAGLYVLLDVVHSHASKNV-LDG-L--N--------E-FDGTQACFFHDGPRGTHPLWDSRLFNYSEI 1102 (1276)
Q Consensus 1036 ~eEfK~LV~alHk~GI~VILDvV~NHt~~~~-~~~-~--~--------~-f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np 1102 (1276)
-++++++-+.|+.+||++|-|+.+-=...+. .|. . . + -+|..|.||... -.+|+.+.+|+..-
T Consensus 211 ~~Q~~~l~~yA~~~~I~L~gDlpi~v~~dsaDvWa~~~~F~l~~~~GaP~~agvpPd~Fs~~----GQ~WG~P~y~w~~l 286 (513)
T TIGR00217 211 FSQFQALKRYANDMGIGLYGDLPVFVAYDSADVWADPELFCLRASAGAPKPAGLGPDYFLEQ----GQNWGLPPYDWNVL 286 (513)
T ss_pred HHHHHHHHHHHhcCCcEEEEeCcceeCCCcHHHHhCHHHhCCCcccCCCCCCCCCCCccccc----CCCCCCCCcCHHHH
Confidence 3678888889999999999999875322211 111 0 0 1 223335566442 24788777776421
Q ss_pred --HHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCC-CCCccccCCCCCchHHHHHHHHHHHHHhhCCC-eE
Q psy9003 1103 --EVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFS-GHYDEYFGLNVDTDALIYLMVANKFLHDKYPE-II 1178 (1276)
Q Consensus 1103 --~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~-~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~Pd-vi 1178 (1276)
.--+..++.+++=++ .+|+.|+|-...+.+. +..+ +.....-|.-+..+.-+++..+ ..+.+. +.
T Consensus 287 ~~~gy~ww~~rlr~~~~--~~d~lRIDHf~Gf~r~-----w~IP~g~~ta~~G~wv~~Pg~~l~~~l----~~e~~~~~~ 355 (513)
T TIGR00217 287 KARGYEWWIKRLGANMQ--YADILRIDHFRGFVSL-----WWVPAGESTAFNGAWVHYPGDDFFNIL----ANESKDNLK 355 (513)
T ss_pred HhcCcHHHHHHHHHHHH--hCCeEEecchhhhcee-----eeecCCCCCCCCCeeEeCCHHHHHHHH----HHHcCCCCc
Confidence 112345666666666 6888999965544211 0000 0000111111222333455444 344455 88
Q ss_pred EEEEccCCCCCC
Q psy9003 1179 TIAEDVSGMPAS 1190 (1276)
Q Consensus 1179 lIAE~~s~~p~~ 1190 (1276)
+|||+.+.-|.-
T Consensus 356 vIaEDLG~v~~~ 367 (513)
T TIGR00217 356 IIGEDLGTVPEE 367 (513)
T ss_pred EEeeeCCCCCHH
Confidence 999997765543
No 239
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=77.47 E-value=13 Score=43.03 Aligned_cols=128 Identities=20% Similarity=0.276 Sum_probs=76.5
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEEeccccCCccc-CCCcCCCCCCCcccccCCCCCCCCCCCc-CCCCCcHHHHHHHHHH
Q psy9003 1034 GTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVL-DGLNEFDGTQACFFHDGPRGTHPLWDSR-LFNYSEIEVLRFLLSN 1111 (1276)
Q Consensus 1034 Gt~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~-~~~~~f~g~~~~Yy~~~~~g~~~~W~g~-~LN~~np~Vr~~Iids 1111 (1276)
.+++|+|.+.+ .|..+|.=+-+.-...-.. |. ..+....|.|.-. .-++|.|+ .+.|..|+-++.+.+-
T Consensus 61 ~~~eelr~~~~----gg~~pIAYlsIg~ae~yR~Ywd-~~w~~~~p~wLg~----edP~W~Gny~VkYW~~eWkdii~~~ 131 (300)
T COG2342 61 WTIEELRTKAD----GGVKPIAYLSIGEAESYRFYWD-KYWLTGRPDWLGE----EDPEWPGNYAVKYWEPEWKDIIRSY 131 (300)
T ss_pred CcHHHHHHHhc----CCeeEEEEEechhhhhhhhHhh-hhhhcCCcccccC----CCCCCCCCceeeccCHHHHHHHHHH
Confidence 57888887766 6656665444432221110 00 0111111222211 23567764 4689999999999999
Q ss_pred HHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEE
Q psy9003 1112 LRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITI 1180 (1276)
Q Consensus 1112 l~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilI 1180 (1276)
+....+ -|+||.=+|.+..--|-. |. ...-+.+.......|+.++.+.+|..+|...+|
T Consensus 132 l~rL~d-~GfdGvyLD~VD~y~Y~~------~~---~~~~~~~~~k~m~~~i~~i~~~~ra~~~~~~Vi 190 (300)
T COG2342 132 LDRLID-QGFDGVYLDVVDAYWYVE------WN---DRETGVNAAKKMVKFIAAIAEYARAANPLFRVI 190 (300)
T ss_pred HHHHHH-ccCceEEEeeechHHHHH------Hh---cccccccHHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 988777 599999999876542110 00 001112233455679999999999999996665
No 240
>KOG0195|consensus
Probab=77.45 E-value=2 Score=49.31 Aligned_cols=44 Identities=16% Similarity=0.154 Sum_probs=33.1
Q ss_pred hHHHHHhhhcccccCCCChhhhhcccccchhccccCCHhHHHhhcccc
Q psy9003 393 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 440 (1276)
Q Consensus 393 d~vkyLi~~~h~~~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~ 440 (1276)
=||.+-.++..-|.-.+++-+. .|||-||..|+..+|+-|+..+
T Consensus 14 ~qvrlwld~tehdln~gddhgf----splhwaakegh~aivemll~rg 57 (448)
T KOG0195|consen 14 FQVRLWLDDTEHDLNVGDDHGF----SPLHWAAKEGHVAIVEMLLSRG 57 (448)
T ss_pred EEEEEEecCcccccccccccCc----chhhhhhhcccHHHHHHHHhcc
Confidence 3444445555557777777888 9999999999999988887654
No 241
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=76.49 E-value=9.3 Score=44.43 Aligned_cols=77 Identities=16% Similarity=0.079 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEe-ccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHH
Q psy9003 1035 TPEQLKYLVDECHKAGLYVLLDVV-HSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLR 1113 (1276)
Q Consensus 1035 t~eEfK~LV~alHk~GI~VILDvV-~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~ 1113 (1276)
|.+|++++|+-|.++||+||-.+- +.|+..--.. +..... ....+....-....||..+|++.+++.+.+.
T Consensus 70 T~~di~elv~yA~~rgI~viPEiD~PGH~~a~~~~----~p~l~~----~~~~~~~~~~~~~~l~~~~~~t~~fl~~l~~ 141 (303)
T cd02742 70 TYAQLKDIIEYAAARGIEVIPEIDMPGHSTAFVKS----FPKLLT----ECYAGLKLRDVFDPLDPTLPKGYDFLDDLFG 141 (303)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccchHHHHHHHHh----CHHhcc----CccccCCCCCCCCccCCCCccHHHHHHHHHH
Confidence 689999999999999999999884 7777532110 000000 0000000000124789999999999999999
Q ss_pred HHHHhC
Q psy9003 1114 WYLDEY 1119 (1276)
Q Consensus 1114 ~Wv~ey 1119 (1276)
-+++-|
T Consensus 142 e~~~lf 147 (303)
T cd02742 142 EIAELF 147 (303)
T ss_pred HHHHhC
Confidence 999854
No 242
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=75.30 E-value=4.8 Score=45.73 Aligned_cols=50 Identities=22% Similarity=0.261 Sum_probs=39.1
Q ss_pred HHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHHh
Q psy9003 1039 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDE 1118 (1276)
Q Consensus 1039 fK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~e 1118 (1276)
.++||+.+|++|++|++-+.+. +|++..+.++..+.+
T Consensus 68 p~~~i~~l~~~g~~~~~~~~P~-------------------------------------------v~~w~~~~~~~~~~~ 104 (265)
T cd06589 68 PKSMIDELHDNGVKLVLWIDPY-------------------------------------------IREWWAEVVKKLLVS 104 (265)
T ss_pred HHHHHHHHHHCCCEEEEEeChh-------------------------------------------HHHHHHHHHHHhhcc
Confidence 5789999999999999976332 266667777666567
Q ss_pred CCCcEEccCCccc
Q psy9003 1119 YQFDGFRFDGVTS 1131 (1276)
Q Consensus 1119 ygVDGFRfD~a~~ 1131 (1276)
+|||||-+|...-
T Consensus 105 ~Gvdg~w~D~~E~ 117 (265)
T cd06589 105 LGVDGFWTDMGEP 117 (265)
T ss_pred CCCCEEeccCCCC
Confidence 8999999997543
No 243
>KOG0506|consensus
Probab=74.92 E-value=2.2 Score=51.77 Aligned_cols=51 Identities=27% Similarity=0.269 Sum_probs=30.0
Q ss_pred cccccCCChHHHHHHHhhhhccCCCCCccccchhhhhhcccccCCCHHHHHHHhh
Q psy9003 270 HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 324 (1276)
Q Consensus 270 h~~~~~~~ie~~~yli~e~~~~~~~~~~~~~t~~~~~~~~a~~~gsi~~l~~Lv~ 324 (1276)
|.|+.-||++++|+||+.|+-+|..-+.+|.|-+..+.| .++.+++|+|-+
T Consensus 544 HvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~----F~h~~v~k~L~~ 594 (622)
T KOG0506|consen 544 HVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKH----FKHKEVVKLLEE 594 (622)
T ss_pred eeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHh----cCcHHHHHHHHH
Confidence 455555666666666666666666666666666655444 455666666543
No 244
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=74.73 E-value=7.1 Score=37.99 Aligned_cols=48 Identities=27% Similarity=0.427 Sum_probs=36.5
Q ss_pred EEEEEEccC---CceEEEEeecc-CCCcc------e------EEEEEccCcccc---ceEEEEEecCC
Q psy9003 75 VRCFEWAPS---AQQLYLTGNVS-LTPWS------I------MEEASLSSIKLI---QSIQYILTGVF 123 (1276)
Q Consensus 75 ~~f~~wAP~---A~~v~l~gdfn-~~~w~------m------~~~~~~~~~~~g---~~yky~i~~~~ 123 (1276)
|+|++-.|. -+.|+|+|+.. ..+|+ | .|++.++ +..+ --|||.|...+
T Consensus 2 v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~-~p~~~~~ieYKyvi~~~~ 68 (99)
T cd05816 2 VQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDVGFPIWEADID-ISKDSFPFEYKYIIANKD 68 (99)
T ss_pred EEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCCCCCcEEEEEE-eCCCCccEEEEEEEEeCC
Confidence 789999985 46899999987 67888 5 8987763 3333 36999888766
No 245
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=74.73 E-value=14 Score=42.76 Aligned_cols=89 Identities=22% Similarity=0.279 Sum_probs=57.0
Q ss_pred HHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHHh
Q psy9003 1039 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDE 1118 (1276)
Q Consensus 1039 fK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~e 1118 (1276)
..+|++.+|++|++|++=+- +..... |+ +..|+ --.++|..|+.+++++..++++
T Consensus 47 ~~~~~~~a~~~~~kv~~~i~-~~~~~~-------~~---~~~~~--------------~~l~~~~~r~~fi~~iv~~l~~ 101 (313)
T cd02874 47 DERLIEAAKRRGVKPLLVIT-NLTNGN-------FD---SELAH--------------AVLSNPEARQRLINNILALAKK 101 (313)
T ss_pred CHHHHHHHHHCCCeEEEEEe-cCCCCC-------CC---HHHHH--------------HHhcCHHHHHHHHHHHHHHHHH
Confidence 35899999999999997552 211100 00 00000 0134678899999999999999
Q ss_pred CCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCc-hHHHHHHHHHHHHHhh
Q psy9003 1119 YQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDT-DALIYLMVANKFLHDK 1173 (1276)
Q Consensus 1119 ygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~-~a~~Fl~el~~~Vr~~ 1173 (1276)
||+||+-+|--. +. ..+. .-..|++++++.+++.
T Consensus 102 ~~~DGidiDwE~-~~--------------------~~d~~~~~~fl~~lr~~l~~~ 136 (313)
T cd02874 102 YGYDGVNIDFEN-VP--------------------PEDREAYTQFLRELSDRLHPA 136 (313)
T ss_pred hCCCcEEEeccc-CC--------------------HHHHHHHHHHHHHHHHHhhhc
Confidence 999999999522 10 0111 2356888998888753
No 246
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=73.99 E-value=2.9 Score=51.90 Aligned_cols=143 Identities=17% Similarity=0.245 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEeccccCCcc-cC-CCcCC-----CCCCCcccccCCCCCCCCCCCcCCCCCcHHH--HH
Q psy9003 1036 PEQLKYLVDECHKAGLYVLLDVVHSHASKNV-LD-GLNEF-----DGTQACFFHDGPRGTHPLWDSRLFNYSEIEV--LR 1106 (1276)
Q Consensus 1036 ~eEfK~LV~alHk~GI~VILDvV~NHt~~~~-~~-~~~~f-----~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~V--r~ 1106 (1276)
-++++++-+.|+++||++|.|+.+-=...+. .| ....| -|..|++|.. .| .+|+.|.+|+..-.- -+
T Consensus 191 ~~Q~~~~~~~A~~~gI~L~gDlpigv~~dsaDvW~~~~lF~~~~~aGaPPD~fs~--~G--Q~WG~P~y~w~~l~~~gy~ 266 (496)
T PF02446_consen 191 FKQWKAAKEYAREMGIGLIGDLPIGVSPDSADVWANPELFLLDASAGAPPDYFSP--TG--QNWGNPPYNWDALKEDGYR 266 (496)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEESS--SSSHHHHH-GGGB-B-EEEEE-SSSSSS--S---EEEEEE-B-HHHHHHTTTH
T ss_pred HHHHHHHHHHHHHCCCEEEEeccceECCCcHHHHhCHHHHhCcCeeCCCCCCCCc--cc--ccCCCCCcCHHHHHHcCCH
Confidence 3678899999999999999999865222211 11 11111 1444566643 22 467766665543111 14
Q ss_pred HHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCC-CCccccCCCCCchHHHHHHHHHHHHHhhCC-CeEEEEEcc
Q psy9003 1107 FLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSG-HYDEYFGLNVDTDALIYLMVANKFLHDKYP-EIITIAEDV 1184 (1276)
Q Consensus 1107 ~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~-~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~P-dvilIAE~~ 1184 (1276)
.+++-+++=++ .+|++|+|-+..+.+. +..+. ......|.-.......++..+. ...+ ++.+|||+.
T Consensus 267 ww~~rl~~~~~--~~d~lRIDH~~Gf~r~-----W~IP~~~~~a~~G~~~~~p~~~ll~~l~----~e~~r~~~vigEDL 335 (496)
T PF02446_consen 267 WWIDRLRANMR--LFDALRIDHFRGFFRY-----WWIPAGGETAIDGAWVRYPGEDLLAILA----LESGRDCLVIGEDL 335 (496)
T ss_dssp HHHHHHHHHHC--C-SEEEEETGGGGTEE-----EEEETT-SSSTT-EEEE--HHHHHHHHH----HHHS-S-EEEE--T
T ss_pred HHHHHHHHHHH--hCCchHHHHHHHHHhe-----eEecCCCCCCCCceeecchHHHHHHHHH----HHcCCCCcEEEeec
Confidence 56666666555 7899999976655321 00000 0000111111122334554444 3444 899999998
Q ss_pred CCCCCCccc
Q psy9003 1185 SGMPASCRP 1193 (1276)
Q Consensus 1185 s~~p~~~~p 1193 (1276)
+.-|.-.+.
T Consensus 336 G~vp~~v~~ 344 (496)
T PF02446_consen 336 GTVPPEVRE 344 (496)
T ss_dssp SS--HHHHH
T ss_pred CCCcHHHHH
Confidence 776654433
No 247
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=73.71 E-value=9.4 Score=36.74 Aligned_cols=62 Identities=15% Similarity=0.228 Sum_probs=41.2
Q ss_pred eEEEEE--ccCCcEEEEEccCC---CCcc-ccccceec----CCCeEEEEcCCCCCCCcccCcccEEEEEEEEeCCee
Q psy9003 782 CHKAGL--LCFMHVVCAAGDFN---NWNR-EEFAYKKL----DFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHL 849 (1276)
Q Consensus 782 a~Falw--AP~A~~VsLvGDFN---~wd~-~~~pM~r~----~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~~dG~~ 849 (1276)
++|++- ....++|.|+|+.. +|++ ..++|... ....|++.+.-. .+ .-..|+|.+...+|..
T Consensus 4 V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp-~~-----~~~eYKy~i~~~~g~~ 75 (96)
T PF00686_consen 4 VTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLP-AG-----TPFEYKYVIKDADGNV 75 (96)
T ss_dssp EEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEE-TT-----SEEEEEEEEEETTSEE
T ss_pred EEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECc-CC-----CEEEEEEEEEeCCCCE
Confidence 466662 33456888998764 7986 57899864 458999988422 22 1358999987666643
No 248
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=73.52 E-value=22 Score=42.29 Aligned_cols=81 Identities=15% Similarity=0.092 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEe-ccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHH
Q psy9003 1035 TPEQLKYLVDECHKAGLYVLLDVV-HSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLR 1113 (1276)
Q Consensus 1035 t~eEfK~LV~alHk~GI~VILDvV-~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~ 1113 (1276)
|.+|+|++|+-|.++||+||-.+- +.|+..-....+ .+......++... .. .-....||..+|++.+++.+++.
T Consensus 68 T~~di~eiv~yA~~rgI~vIPEID~PGH~~a~~~~~p-~l~~~~~~~~~~~-~~---~~~~~~L~~~~~~t~~fl~~vl~ 142 (348)
T cd06562 68 TPEDVKEIVEYARLRGIRVIPEIDTPGHTGSWGQGYP-ELLTGCYAVWRKY-CP---EPPCGQLNPTNPKTYDFLKTLFK 142 (348)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccCchhhHHHHHhCh-hhhCCCCcccccc-cc---CCCCccccCCChhHHHHHHHHHH
Confidence 789999999999999999999984 777754211100 0000000000000 00 00124689999999999999999
Q ss_pred HHHHhCC
Q psy9003 1114 WYLDEYQ 1120 (1276)
Q Consensus 1114 ~Wv~eyg 1120 (1276)
-.++-|.
T Consensus 143 E~~~lF~ 149 (348)
T cd06562 143 EVSELFP 149 (348)
T ss_pred HHHHhcC
Confidence 9998654
No 249
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=72.23 E-value=2.1e+02 Score=33.69 Aligned_cols=102 Identities=23% Similarity=0.158 Sum_probs=59.9
Q ss_pred ccCCChhhhhhhhhhhhhhccCCC-HHHHHHH-------hhhhcccc---cCCCHHHHHHHHhhhhhcCCCCCc-chhhh
Q psy9003 482 GLFGTPEQLKYLVDECHKAGLFGT-PEQLKYL-------VDECHKAG---LFGTPEQLKYLVDECHKAGLFGTP-EQLKY 549 (1276)
Q Consensus 482 ~~~~~~e~~~~lv~~~~~~~~~~~-~~~~~~~-------~t~~~~a~---~~g~~e~~~~lv~~~~~~~~~~t~-~~l~~ 549 (1276)
...-|+|.|.-|+.-+...+.... +++++.+ ...+.+++ ...+++.+.-|++.+...||.-.- +.|+-
T Consensus 80 ~~~~~l~~l~~Ll~e~~~L~~~~pEi~~L~~l~~~ve~f~~~a~~~L~~~~~~~~~~le~Ll~~g~s~~v~lpel~~L~~ 159 (335)
T PF08429_consen 80 RNKLTLEELEALLEEIESLPFDCPEIDQLKELLEEVEEFQSRAQEALSDPESPSLEELEELLEEGESFGVDLPELDQLRR 159 (335)
T ss_pred cccCCHHHHHHHHHHHhcCCeeCchHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHhcccCceeChhHHHHHH
Confidence 445666666666666655554332 3333333 33444555 468899999999999999975432 23333
Q ss_pred hhhhh------hccccC---CCHHHHHHHHHhhhhccCCCChh
Q psy9003 550 LVDEC------HKAGLF---GTPEQLKYLVDECHKAGLFGTPE 583 (1276)
Q Consensus 550 ~~~~~------~~~~~~---~~~e~~~~l~~~~~~~~~~~~~~ 583 (1276)
.+..+ ...+.. -|++.+.-|.+.|.+++.....+
T Consensus 160 ~l~~~~W~~~~~~~~~~~~~~tL~~l~~Ll~~g~~l~~~~~~~ 202 (335)
T PF08429_consen 160 RLEQLEWLEEAREILSDPDRLTLDELRELLDEGERLGIPSDEK 202 (335)
T ss_pred HHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhhcCCCccchH
Confidence 32221 222222 57888888888888888633333
No 250
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=72.09 E-value=7.3 Score=37.50 Aligned_cols=49 Identities=16% Similarity=0.381 Sum_probs=35.6
Q ss_pred EEEEE--EccCCceEEEEeecc-CCCcc------e----------EEEEEccCccccc--eEEEEEecCCC
Q psy9003 75 VRCFE--WAPSAQQLYLTGNVS-LTPWS------I----------MEEASLSSIKLIQ--SIQYILTGVFG 124 (1276)
Q Consensus 75 ~~f~~--wAP~A~~v~l~gdfn-~~~w~------m----------~~~~~~~~~~~g~--~yky~i~~~~g 124 (1276)
|+|++ ...-.+.|+|+|+.. ..+|+ | +|++.+ .+..|. -|||.|.+.+|
T Consensus 4 V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v-~lp~~~~~eYKy~i~~~~g 73 (96)
T PF00686_consen 4 VTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATV-DLPAGTPFEYKYVIKDADG 73 (96)
T ss_dssp EEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEE-EEETTSEEEEEEEEEETTS
T ss_pred EEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEE-ECcCCCEEEEEEEEEeCCC
Confidence 67777 233457999999997 55777 3 799988 566676 68888888777
No 251
>KOG0782|consensus
Probab=70.51 E-value=2.3 Score=52.32 Aligned_cols=51 Identities=29% Similarity=0.300 Sum_probs=34.1
Q ss_pred cccccCCCHHHHHHHhhhhhccCCCCcccchhhh----hccccccccCCChhhhHHhhhhhc
Q psy9003 308 HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYL----VDECHKAGLFGTPEQLKYLVDECH 365 (1276)
Q Consensus 308 ~~a~~~gsi~~l~~Lv~~~~~~~~~~~~~~~~~~----~~~~~~a~~~g~ie~~~yLi~~~h 365 (1276)
|.|+.+|+-|++|||.|++- .+++..+ -|-.|||..+++--+-.||||-..
T Consensus 904 h~a~~tg~~eivkyildh~p-------~elld~~de~get~lhkaa~~~~r~vc~~lvdaga 958 (1004)
T KOG0782|consen 904 HYAAKTGNGEIVKYILDHGP-------SELLDMADETGETALHKAACQRNRAVCQLLVDAGA 958 (1004)
T ss_pred HHHHhcCChHHHHHHHhcCC-------HHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcch
Confidence 56777899999999998854 2233222 344577777777777777766543
No 252
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=67.63 E-value=44 Score=39.30 Aligned_cols=114 Identities=18% Similarity=0.120 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHH
Q psy9003 1038 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLD 1117 (1276)
Q Consensus 1038 EfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~ 1117 (1276)
-.-+|-+.+...||+|++|+-|.-...+ | ........|..-.++--...+..|-.+++....+
T Consensus 105 k~ieiakRAk~~GmKVl~dFHYSDfwaD------------P-----akQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~ 167 (403)
T COG3867 105 KAIEIAKRAKNLGMKVLLDFHYSDFWAD------------P-----AKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKK 167 (403)
T ss_pred HHHHHHHHHHhcCcEEEeeccchhhccC------------h-----hhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556777899999999976522221 0 0111233554322333345667777778887777
Q ss_pred hCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCch-HHHHHHHHHHHHHhhCCCeEEE
Q psy9003 1118 EYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTD-ALIYLMVANKFLHDKYPEIITI 1180 (1276)
Q Consensus 1118 eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~-a~~Fl~el~~~Vr~~~PdvilI 1180 (1276)
| ||+ .|++..=-....|+ -|+ + |...+.+ -...+.+-..++|+..|++.++
T Consensus 168 e-Gi~---pdmVQVGNEtn~gf--lwp--~----Ge~~~f~k~a~L~n~g~~avrev~p~ikv~ 219 (403)
T COG3867 168 E-GIL---PDMVQVGNETNGGF--LWP--D----GEGRNFDKMAALLNAGIRAVREVSPTIKVA 219 (403)
T ss_pred c-CCC---ccceEeccccCCce--ecc--C----CCCcChHHHHHHHHHHhhhhhhcCCCceEE
Confidence 6 654 56544211111111 122 0 1111222 2345666677888889976543
No 253
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=67.24 E-value=37 Score=36.43 Aligned_cols=64 Identities=27% Similarity=0.293 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHHc--CCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHH
Q psy9003 1035 TPEQLKYLVDECHKA--GLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNL 1112 (1276)
Q Consensus 1035 t~eEfK~LV~alHk~--GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl 1112 (1276)
..+.....+++++++ |++|++=+--.. .. ..+ --..++..|+.+++++
T Consensus 47 ~~~~~~~~i~~l~~~~~g~kv~~sigg~~-~~--------------~~~---------------~~~~~~~~~~~f~~~~ 96 (210)
T cd00598 47 SEEPLKGALEELASKKPGLKVLISIGGWT-DS--------------SPF---------------TLASDPASRAAFANSL 96 (210)
T ss_pred ccHHHHHHHHHHHHhCCCCEEEEEEcCCC-CC--------------CCc---------------hhhcCHHHHHHHHHHH
Confidence 345667778888887 999998662110 00 000 1134667888899999
Q ss_pred HHHHHhCCCcEEccCC
Q psy9003 1113 RWYLDEYQFDGFRFDG 1128 (1276)
Q Consensus 1113 ~~Wv~eygVDGFRfD~ 1128 (1276)
..|+++|++||+-+|.
T Consensus 97 ~~~v~~~~~DGidiD~ 112 (210)
T cd00598 97 VSFLKTYGFDGVDIDW 112 (210)
T ss_pred HHHHHHcCCCceEEee
Confidence 9999999999999995
No 254
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=67.12 E-value=38 Score=40.29 Aligned_cols=106 Identities=19% Similarity=0.120 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCC-cHHHHHHHHHHHHH
Q psy9003 1036 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYS-EIEVLRFLLSNLRW 1114 (1276)
Q Consensus 1036 ~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~-np~Vr~~Iidsl~~ 1114 (1276)
.+=+++|+++|+++||++.+ -+.+ .+-+. +.|- ....+.... .....-. ...+.+++...++-
T Consensus 137 rDiv~El~~A~rk~Glk~G~--Y~S~-~dw~~----------~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~ql~E 200 (346)
T PF01120_consen 137 RDIVGELADACRKYGLKFGL--YYSP-WDWHH----------PDYP-PDEEGDENG--PADGPGNWQRYYNEYWLAQLRE 200 (346)
T ss_dssp S-HHHHHHHHHHHTT-EEEE--EEES-SSCCC----------TTTT-SSCHCHHCC----HCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCeEEE--Eecc-hHhcC----------cccC-CCccCCccc--ccccchhhHhHhhhhhHHHHHH
Confidence 47899999999999999998 3332 22110 0000 000000000 0000000 12245588899999
Q ss_pred HHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEEE
Q psy9003 1115 YLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIA 1181 (1276)
Q Consensus 1115 Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilIA 1181 (1276)
.+++|.+|.+=||....- ..+.+ ....+.+.+++..|++++..
T Consensus 201 L~~~Y~~d~lWfDg~~~~-----------------------~~~~~-~~~~~~~~i~~~qp~~ii~~ 243 (346)
T PF01120_consen 201 LLTRYKPDILWFDGGWPD-----------------------PDEDW-DSAELYNWIRKLQPDVIINN 243 (346)
T ss_dssp HHHCSTESEEEEESTTSC-----------------------CCTHH-HHHHHHHHHHHHSTTSEEEC
T ss_pred HHhCCCcceEEecCCCCc-----------------------ccccc-CHHHHHHHHHHhCCeEEEec
Confidence 999999999999974311 00111 23667788889999887764
No 255
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=66.99 E-value=21 Score=34.75 Aligned_cols=58 Identities=22% Similarity=0.286 Sum_probs=37.1
Q ss_pred CceEEEEEccC--CcEEEEE--ccCCCCccccccceecC----CCeEEEEcCCCCCCCcccCcccEEEEEEEE
Q psy9003 780 DECHKAGLLCF--MHVVCAA--GDFNNWNREEFAYKKLD----FGKWELVLPPNPDGSCKLTHLSQVKLVVRN 844 (1276)
Q Consensus 780 D~a~FalwAP~--A~~VsLv--GDFN~wd~~~~pM~r~~----~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~ 844 (1276)
+.++++++.+. .++|.|+ .++..+.....+|.+.. ...|++.++... | ...|.|.|..
T Consensus 16 ~~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~~~~~~~~~~~i~~~~-~------~~~Y~F~l~~ 81 (116)
T cd02857 16 DTLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGSDELFDYWEATLPPPT-G------RLRYYFELVD 81 (116)
T ss_pred CEEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeeeCCceeEEEEEEecCC-c------EEEEEEEEEc
Confidence 67899999875 5677775 22212233467897632 357999997432 3 2678888863
No 256
>KOG1065|consensus
Probab=66.97 E-value=12 Score=48.62 Aligned_cols=93 Identities=24% Similarity=0.420 Sum_probs=57.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEEeccc-cCCcccCCCcCCC-CCCCcccccCCCCCC----CCCC--CcCCCCCcH
Q psy9003 1031 GLFGTPEQLKYLVDECHKAGLYVLLDVVHSH-ASKNVLDGLNEFD-GTQACFFHDGPRGTH----PLWD--SRLFNYSEI 1102 (1276)
Q Consensus 1031 ~~~Gt~eEfK~LV~alHk~GI~VILDvV~NH-t~~~~~~~~~~f~-g~~~~Yy~~~~~g~~----~~W~--g~~LN~~np 1102 (1276)
..|+. ++.+++.+|++|+++|+=+-++- +... . ..|+ +.....+..+..|.. .-|. ..-.|+.||
T Consensus 348 ~~fp~---~~~fv~~Lh~~G~kyvliidP~is~~~~--y--~~y~~g~~~~v~I~~~~g~~~~lg~vwP~~~~fpDftnp 420 (805)
T KOG1065|consen 348 VWFPD---LKDFVDDLHARGFKYVLIIDPFISTNSS--Y--GPYDRGVAKDVLIKNREGSPKMLGEVWPGSTAFPDFTNP 420 (805)
T ss_pred ccCcc---hHHHHHHHHhCCCeEEEEeCCccccCcc--c--hhhhhhhhhceeeecccCchhhhcccCCCcccccccCCc
Confidence 44544 99999999999999876544221 1111 0 0111 111122222222222 1232 345789999
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEccCCcc
Q psy9003 1103 EVLRFLLSNLRWYLDEYQFDGFRFDGVT 1130 (1276)
Q Consensus 1103 ~Vr~~Iidsl~~Wv~eygVDGFRfD~a~ 1130 (1276)
.+..+..+.+...=+++++|||-+|+-.
T Consensus 421 ~~~~Ww~~~~~~fh~~vp~dg~wiDmnE 448 (805)
T KOG1065|consen 421 AVVEWWLDELKRFHDEVPFDGFWIDMNE 448 (805)
T ss_pred hHHHHHHHHHHhhcccCCccceEEECCC
Confidence 9999999999888889999999999733
No 257
>KOG3676|consensus
Probab=64.90 E-value=12 Score=48.47 Aligned_cols=167 Identities=15% Similarity=0.100 Sum_probs=103.1
Q ss_pred ChhhhhcccccchhccccCCHhHHHhhcccccccccCCChhhHHHHHHHHhHhc--cCCChhhHHHh-hhhhcccccCCC
Q psy9003 410 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG--LFGTPEQLKYL-VDECHKAGLFGT 486 (1276)
Q Consensus 410 ~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~e~l~~l~~~~~~~~--~~~~~~~~~~~-v~~~~~a~~~~~ 486 (1276)
...|. |.||+|..+.++ +-+|-...|.+++.++- +--++ +|. -|..|-|-|+-+
T Consensus 140 Ga~GE----T~Lh~~lL~~~~----------------~~n~la~~LL~~~p~lind~~~~e---eY~GqSaLHiAIv~~~ 196 (782)
T KOG3676|consen 140 GATGE----TLLHKALLNLSD----------------GHNELARVLLEIFPKLINDIYTSE---EYYGQSALHIAIVNRD 196 (782)
T ss_pred cchhh----hHHHHHHhcCch----------------hHHHHHHHHHHHhHHHhhhhhhhH---hhcCcchHHHHHHhcc
Confidence 56678 999999854332 22445556666666553 11111 222 589999999999
Q ss_pred hhhhhhhhhhhhhhccCC-----C-HHH------------HHHHhhhhcccccCCCHHHHHHHHhhhhhcCCCCCcc--h
Q psy9003 487 PEQLKYLVDECHKAGLFG-----T-PEQ------------LKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPE--Q 546 (1276)
Q Consensus 487 ~e~~~~lv~~~~~~~~~~-----~-~~~------------~~~~~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~--~ 546 (1276)
.|.+++|++.+++.+-.- . .++ +...=.+..=|.=.+..|++.+|++.+++++.-+|-. .
T Consensus 197 ~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTV 276 (782)
T KOG3676|consen 197 AELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTV 276 (782)
T ss_pred HHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChH
Confidence 999999999999886511 0 122 1111111111111567999999999999999887764 5
Q ss_pred hhhhhhhhhccccCCCHHHHHHHHHhhhh--ccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhh
Q psy9003 547 LKYLVDECHKAGLFGTPEQLKYLVDECHK--AGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC 611 (1276)
Q Consensus 547 l~~~~~~~~~~~~~~~~e~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~ 611 (1276)
|+-.| .|-..+--.+++..++. ..+-- +.+-|..|=|..-|.+|..++++.+-
T Consensus 277 LH~lV-------i~~~~~My~~~L~~ga~~l~~v~N-----~qgLTPLtLAaklGk~emf~~ile~~ 331 (782)
T KOG3676|consen 277 LHMLV-------IHFVTEMYDLALELGANALEHVRN-----NQGLTPLTLAAKLGKKEMFQHILERR 331 (782)
T ss_pred HHHHH-------HHHHHHHHHHHHhcCCCccccccc-----cCCCChHHHHHHhhhHHHHHHHHHhh
Confidence 55444 34555666666666665 22100 11456667777778888887777763
No 258
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=64.15 E-value=29 Score=33.82 Aligned_cols=60 Identities=18% Similarity=0.355 Sum_probs=41.9
Q ss_pred eEEEEEccC---CcEEEEEcc---CCCCcc-ccccceecCCCeEEEEcCCCCCCCcccCcccEEEEEEEEeC
Q psy9003 782 CHKAGLLCF---MHVVCAAGD---FNNWNR-EEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQH 846 (1276)
Q Consensus 782 a~FalwAP~---A~~VsLvGD---FN~wd~-~~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~~d 846 (1276)
++|++..|. -+.|.|+|+ +.+|++ ..++|...+...|++.++-.... .-..|+|.+...+
T Consensus 2 v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~~p~~~-----~~ieYKyvi~~~~ 68 (99)
T cd05816 2 VQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDVGFPIWEADIDISKDS-----FPFEYKYIIANKD 68 (99)
T ss_pred EEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCCCCCcEEEEEEeCCCC-----ccEEEEEEEEeCC
Confidence 578998875 457888875 468985 45799877788998887532111 1257999887544
No 259
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=63.54 E-value=22 Score=42.45 Aligned_cols=95 Identities=17% Similarity=0.221 Sum_probs=57.9
Q ss_pred HHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHHhCC
Q psy9003 1041 YLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQ 1120 (1276)
Q Consensus 1041 ~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~eyg 1120 (1276)
..+++||++|++|+-=+.+...+.. .+.+. -| -.++..+..+++.|...++.||
T Consensus 50 ~~idaAHknGV~Vlgti~~e~~~~~-------------~~~~~------------lL-~~~~~~~~~~a~kLv~lak~yG 103 (339)
T cd06547 50 DWINAAHRNGVPVLGTFIFEWTGQV-------------EWLED------------FL-KKDEDGSFPVADKLVEVAKYYG 103 (339)
T ss_pred HHHHHHHhcCCeEEEEEEecCCCch-------------HHHHH------------Hh-ccCcccchHHHHHHHHHHHHhC
Confidence 6888999999999886654422000 00000 00 0013344556666777778899
Q ss_pred CcEEccCCccccccccCCCCCCCCCCCccccCCCCC-chHHHHHHHHHHHHHhhCCCeEEE
Q psy9003 1121 FDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVD-TDALIYLMVANKFLHDKYPEIITI 1180 (1276)
Q Consensus 1121 VDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d-~~a~~Fl~el~~~Vr~~~PdvilI 1180 (1276)
+||+=+|.-.... ...+ ..-..|++++++.+++..|+..+|
T Consensus 104 fDGw~iN~E~~~~-------------------~~~~~~~l~~F~~~L~~~~~~~~~~~~v~ 145 (339)
T cd06547 104 FDGWLINIETELG-------------------DAEKAKRLIAFLRYLKAKLHENVPGSLVI 145 (339)
T ss_pred CCceEeeeeccCC-------------------cHHHHHHHHHHHHHHHHHHhhcCCCcEEE
Confidence 9999999643220 0011 123569999999999988886655
No 260
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=63.00 E-value=5.9 Score=47.43 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEecc
Q psy9003 1035 TPEQLKYLVDECHKAGLYVLLDVVHS 1060 (1276)
Q Consensus 1035 t~eEfK~LV~alHk~GI~VILDvV~N 1060 (1276)
-.++|++|++.||+.||+||.|+-+.
T Consensus 45 ~~~~~~~l~~~a~~~~~~v~~Disp~ 70 (357)
T PF05913_consen 45 YLERLKELLKLAKELGMEVIADISPK 70 (357)
T ss_dssp HHHHHHHHHHHHHHCT-EEEEEE-CC
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCHH
Confidence 36899999999999999999999655
No 261
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=61.59 E-value=5 Score=31.04 Aligned_cols=28 Identities=21% Similarity=0.243 Sum_probs=22.4
Q ss_pred hhhhcccccCCCHHHHHHHHhhhhhcCC
Q psy9003 513 VDECHKAGLFGTPEQLKYLVDECHKAGL 540 (1276)
Q Consensus 513 ~t~~~~a~~~g~~e~~~~lv~~~~~~~~ 540 (1276)
.|+.|.|+..|+.+++++|++.+++++.
T Consensus 3 ~TpLh~A~~~~~~~~v~~Ll~~ga~~~~ 30 (33)
T PF00023_consen 3 NTPLHYAAQRGHPDIVKLLLKHGADINA 30 (33)
T ss_dssp BBHHHHHHHTTCHHHHHHHHHTTSCTTC
T ss_pred ccHHHHHHHHHHHHHHHHHHHCcCCCCC
Confidence 4778888888888888888887777763
No 262
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=58.90 E-value=13 Score=44.03 Aligned_cols=25 Identities=40% Similarity=0.507 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEecc
Q psy9003 1036 PEQLKYLVDECHKAGLYVLLDVVHS 1060 (1276)
Q Consensus 1036 ~eEfK~LV~alHk~GI~VILDvV~N 1060 (1276)
..-|++|++.|++.|++||.|+-+.
T Consensus 48 ~~~~~ell~~Anklg~~vivDvnPs 72 (360)
T COG3589 48 FHRFKELLKEANKLGLRVIVDVNPS 72 (360)
T ss_pred HHHHHHHHHHHHhcCcEEEEEcCHH
Confidence 4579999999999999999999655
No 263
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=58.14 E-value=20 Score=36.22 Aligned_cols=58 Identities=19% Similarity=0.243 Sum_probs=40.0
Q ss_pred ceEEEEEcc---CCcEEEEEcc---CCCCcc-ccccceec--CCCeEEEEcCCCCCCCcccCcccEEEEEEEE
Q psy9003 781 ECHKAGLLC---FMHVVCAAGD---FNNWNR-EEFAYKKL--DFGKWELVLPPNPDGSCKLTHLSQVKLVVRN 844 (1276)
Q Consensus 781 ~a~FalwAP---~A~~VsLvGD---FN~wd~-~~~pM~r~--~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~ 844 (1276)
.++|.+-+| ..+.|.|+|+ +.+|+. ...+|... ....|++.+.-. .+ .-..|+|.+..
T Consensus 2 ~v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~~W~~~v~lp-~~-----~~veYkY~~~~ 68 (120)
T cd05814 2 RVTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKEDDDCNLWKASIELP-RG-----VDFQYRYFVAV 68 (120)
T ss_pred eEEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCCCcCCccEEEEEEC-CC-----CeEEEEEEEEE
Confidence 357888885 4567888887 789985 35789876 678998877421 11 12678887753
No 264
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=57.94 E-value=36 Score=38.81 Aligned_cols=64 Identities=16% Similarity=0.128 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHH
Q psy9003 1035 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRW 1114 (1276)
Q Consensus 1035 t~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~ 1114 (1276)
+..++.+=|++|++.|++|++=+ . .. . ... |. .+ .++++-|+.+++++.-
T Consensus 57 ~~~~~~~~i~~~~~~g~KVllSi--G---G~---~-------~~~-fs-------------~~-a~~~~~r~~f~~s~~~ 106 (256)
T cd06546 57 RFTTLWTELAILQSSGVKVMGML--G---GA---A-------PGS-FS-------------RL-DDDDEDFERYYGQLRD 106 (256)
T ss_pred hhhHHHHHHHHHHhCCCEEEEEE--C---CC---C-------CCC-cc-------------cc-cCCHHHHHHHHHHHHH
Confidence 34566666778899999999854 1 10 0 000 10 11 1345667777888889
Q ss_pred HHHhCCCcEEccCC
Q psy9003 1115 YLDEYQFDGFRFDG 1128 (1276)
Q Consensus 1115 Wv~eygVDGFRfD~ 1128 (1276)
++++|++||+-||-
T Consensus 107 ~~~~~~~DGiDiDw 120 (256)
T cd06546 107 MIRRRGLDGLDLDV 120 (256)
T ss_pred HHHHhCCCceEEee
Confidence 99999999999984
No 265
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=56.72 E-value=81 Score=38.34 Aligned_cols=74 Identities=23% Similarity=0.150 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHH---HHH
Q psy9003 1035 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFL---LSN 1111 (1276)
Q Consensus 1035 t~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~I---ids 1111 (1276)
..+=+++|++||+++||++-+ | |...+ |. .+.|... +.........+...+|+ ..-
T Consensus 126 krDiv~el~~A~rk~Glk~G~---Y-~S~~D--W~-------~p~y~~~--------~~~~~~~~~~~~~~~y~~~~~~Q 184 (384)
T smart00812 126 KRDLVGELADAVRKRGLKFGL---Y-HSLFD--WF-------NPLYAGP--------TSSDEDPDNWPRFQEFVDDWLPQ 184 (384)
T ss_pred CcchHHHHHHHHHHcCCeEEE---E-cCHHH--hC-------CCccccc--------cccccccccchhHHHHHHHHHHH
Confidence 347899999999999999988 2 22211 10 1222110 00001112345567777 888
Q ss_pred HHHHHHhCCCcEEccCCc
Q psy9003 1112 LRWYLDEYQFDGFRFDGV 1129 (1276)
Q Consensus 1112 l~~Wv~eygVDGFRfD~a 1129 (1276)
++-.++.||-|.+=||..
T Consensus 185 l~ELit~Ygpd~lWfD~~ 202 (384)
T smart00812 185 LRELVTRYKPDLLWFDGG 202 (384)
T ss_pred HHHHHhcCCCceEEEeCC
Confidence 899999999999999964
No 266
>KOG0471|consensus
Probab=56.52 E-value=7.8 Score=48.82 Aligned_cols=52 Identities=8% Similarity=-0.015 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhcccCCCCCeeEeecCCCeEEEEEcC-----cEEEEEeCCCCCCcc
Q psy9003 1215 ALFDAAMNTTEERFKWLSADPGYVSTKHEGDKVIIFERA-----GLLFAFNFNGTQSFT 1268 (1276)
Q Consensus 1215 ~~F~~~Ln~l~~~~p~L~~~~~~~l~nHD~~RVlsf~R~-----~ll~v~N~~~~~s~~ 1268 (1276)
..+.+.+..++.....+..+ .....-.++.+++|.|+ .+++++|+.......
T Consensus 454 ~~~~~~~~~lr~~~~~~~~g--~~~~~~~~~~if~~~r~~~~~~~~~~~~~~~~~~~~~ 510 (545)
T KOG0471|consen 454 LKLFKRLLDLRKSERSYLHG--SFVLFAATPGLFSFSRNWDGNERFIAVLNFGDSPLSL 510 (545)
T ss_pred HHHHHHHHHHhhhccccccc--ceeeecCCCceEEEEeccCCCceEEEEEecCCccccc
Confidence 44666666666654322222 23455677889999995 377777776654443
No 267
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=55.63 E-value=20 Score=49.50 Aligned_cols=60 Identities=17% Similarity=0.158 Sum_probs=47.6
Q ss_pred cHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEE
Q psy9003 1101 EIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITI 1180 (1276)
Q Consensus 1101 np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilI 1180 (1276)
+|.++++|.+-.+.-++ -++|||+|-...- ++..-+.+-+..|+.+|+.+++
T Consensus 488 sP~LW~~M~~Y~~~~Ak--iF~G~RiDNCHST--------------------------PlhVaeylLd~AR~vnPnLyV~ 539 (1464)
T TIGR01531 488 SPYLWQHMKEYTEMTAR--IFDGVRIDNCHST--------------------------PIHVAEYLLDAARKYNPNLYVV 539 (1464)
T ss_pred CHHHHHHHHHHHHHHHH--hhcceeeecccCC--------------------------cHHHHHHHHHHHhhcCCCeEEE
Confidence 79999999999998888 5899999976533 3445556677778999999999
Q ss_pred EEccCCCC
Q psy9003 1181 AEDVSGMP 1188 (1276)
Q Consensus 1181 AE~~s~~p 1188 (1276)
||=.++..
T Consensus 540 AELFTGSe 547 (1464)
T TIGR01531 540 AELFTGSE 547 (1464)
T ss_pred eeecCCcH
Confidence 99655543
No 268
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=55.11 E-value=78 Score=37.33 Aligned_cols=78 Identities=21% Similarity=0.293 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEe-ccccCCcccCCCcCCCCCCCcccccCCCCCCCCCC--CcCCCCCcHHHHHHHHHH
Q psy9003 1035 TPEQLKYLVDECHKAGLYVLLDVV-HSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWD--SRLFNYSEIEVLRFLLSN 1111 (1276)
Q Consensus 1035 t~eEfK~LV~alHk~GI~VILDvV-~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~--g~~LN~~np~Vr~~Iids 1111 (1276)
|.+|++++|+-|.++||+||-.+- +.|+..-.. .+..... ...+......|+ .+.||..+|++.+++.+.
T Consensus 66 T~~di~elv~yA~~rgI~vIPEId~PGH~~a~~~----~ypel~~---~~~~~~~~~~~~~~~~~l~~~~p~t~~f~~~l 138 (311)
T cd06570 66 TQEQIREVVAYARDRGIRVVPEIDVPGHASAIAV----AYPELAS---GPGPYVIERGWGVFEPLLDPTNEETYTFLDNL 138 (311)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeecCccchHHHHH----hCHHhcc---CCCccccccccccCCCccCCCChhHHHHHHHH
Confidence 789999999999999999999884 777753211 1110000 000000011222 357999999999999999
Q ss_pred HHHHHHhC
Q psy9003 1112 LRWYLDEY 1119 (1276)
Q Consensus 1112 l~~Wv~ey 1119 (1276)
+.-++.-|
T Consensus 139 ~~E~~~lF 146 (311)
T cd06570 139 FGEMAELF 146 (311)
T ss_pred HHHHHHhC
Confidence 99998854
No 269
>PLN02950 4-alpha-glucanotransferase
Probab=54.75 E-value=21 Score=47.74 Aligned_cols=91 Identities=19% Similarity=0.282 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEeccccCCcc-cC-CCcCC-----CCCCCcccccCCCCCCCCCCCcCCCCCcH--HHHH
Q psy9003 1036 PEQLKYLVDECHKAGLYVLLDVVHSHASKNV-LD-GLNEF-----DGTQACFFHDGPRGTHPLWDSRLFNYSEI--EVLR 1106 (1276)
Q Consensus 1036 ~eEfK~LV~alHk~GI~VILDvV~NHt~~~~-~~-~~~~f-----~g~~~~Yy~~~~~g~~~~W~g~~LN~~np--~Vr~ 1106 (1276)
-++++++-+.|+++||+++-|+.+.=..... .| ....| -|..|++|.. . -.+|+.|..|+..- .--+
T Consensus 460 ~~Ql~~~~~yA~~~Gi~L~GDLpigV~~dSaDvWa~p~lF~l~~~aGaPPD~Fs~--~--GQ~WG~P~ynw~~l~~~gy~ 535 (909)
T PLN02950 460 HSQLSEAAEYARKKGVVLKGDLPIGVDRNSVDTWVYPNLFRMNTSTGAPPDYFDK--N--GQNWGFPTYNWEEMSKDNYA 535 (909)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeeceeCCCcHHHhcCHHHhcCCCccCCCCCcCCc--c--cccCCCCCcCHHHHHhcCcH
Confidence 4678889999999999999999875222111 12 11112 2555677743 2 35788887776531 1224
Q ss_pred HHHHHHHHHHHhCCCcEEccCCcccc
Q psy9003 1107 FLLSNLRWYLDEYQFDGFRFDGVTSM 1132 (1276)
Q Consensus 1107 ~Iidsl~~Wv~eygVDGFRfD~a~~L 1132 (1276)
..++-+++-++ ..|++|+|-+..+
T Consensus 536 ww~~Rlr~~~~--~~d~lRIDH~~Gf 559 (909)
T PLN02950 536 WWRARLTQMAK--YFTAYRIDHILGF 559 (909)
T ss_pred HHHHHHHHHHH--hCCEEEEecchhh
Confidence 56666666666 6888999965443
No 270
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=54.04 E-value=83 Score=36.85 Aligned_cols=60 Identities=17% Similarity=0.169 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHHH
Q psy9003 1036 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWY 1115 (1276)
Q Consensus 1036 ~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~W 1115 (1276)
...+..-|++|+++|.+||+=+ -|....++.. ...-++.+.+++.-+
T Consensus 53 ~~~~~~~i~~lk~~G~kViiS~----------------GG~~g~~~~~-----------------~~~~~~~~~~a~~~~ 99 (294)
T cd06543 53 GGWIKSDIAALRAAGGDVIVSF----------------GGASGTPLAT-----------------SCTSADQLAAAYQKV 99 (294)
T ss_pred chhHHHHHHHHHHcCCeEEEEe----------------cCCCCCcccc-----------------CcccHHHHHHHHHHH
Confidence 4567888999999999998832 1111111110 223466677777778
Q ss_pred HHhCCCcEEccCC
Q psy9003 1116 LDEYQFDGFRFDG 1128 (1276)
Q Consensus 1116 v~eygVDGFRfD~ 1128 (1276)
++.|++||+-||-
T Consensus 100 i~~y~~dgiDfDi 112 (294)
T cd06543 100 IDAYGLTHLDFDI 112 (294)
T ss_pred HHHhCCCeEEEec
Confidence 8999999999995
No 271
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=52.47 E-value=2.7e+02 Score=32.88 Aligned_cols=127 Identities=11% Similarity=0.031 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHH-HcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHH
Q psy9003 1036 PEQLKYLVDECH-KAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRW 1114 (1276)
Q Consensus 1036 ~eEfK~LV~alH-k~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~ 1114 (1276)
.+-|-+.+=.++ +.|++|..-+..= +|+-....+...........-....|..-+|++|+.|.+.-.-
T Consensus 62 aDlf~rvawql~tr~~v~VyAWMPvl-----------af~lp~~~~~~~~~~~~~~~~~y~RLSPf~p~~r~~I~~IYeD 130 (294)
T PF14883_consen 62 ADLFNRVAWQLRTRAGVKVYAWMPVL-----------AFDLPKVKRADEVRTDRPDPDGYRRLSPFDPEARQIIKEIYED 130 (294)
T ss_pred HHHHHHHHHHHhhhhCCEEEEeeehh-----------hccCCCcchhhhccccCCCCCCceecCCCCHHHHHHHHHHHHH
Confidence 455667663454 9999998776541 1111110010000000000111235666789999999999998
Q ss_pred HHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEE
Q psy9003 1115 YLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIIT 1179 (1276)
Q Consensus 1115 Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~Pdvil 1179 (1276)
....-.+||+=|--=..+. |+.... . ..+....-....-+.|..++.+.++...|++.+
T Consensus 131 LA~y~~fdGILFhDDa~L~--D~E~~~-~---~~~~~~~~Kt~~Li~ft~eL~~~v~~~rp~lkT 189 (294)
T PF14883_consen 131 LARYSKFDGILFHDDAVLS--DFEIAA-I---RQNPADRQKTRALIDFTMELAAAVRRYRPDLKT 189 (294)
T ss_pred HHhhCCCCeEEEcCCcccc--chhhhh-h---ccChhhHHHHHHHHHHHHHHHHHHHHhCccchh
Confidence 8885599998883211221 111000 0 000000000112367999999999999998664
No 272
>KOG1710|consensus
Probab=51.78 E-value=38 Score=39.59 Aligned_cols=92 Identities=18% Similarity=0.130 Sum_probs=64.3
Q ss_pred hhccccCCCHHHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCC--CChhhhhhhHHHhh
Q psy9003 554 CHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLF--GTPEQLKYLVDECH 631 (1276)
Q Consensus 554 ~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~ 631 (1276)
.+-|--.||++-+++|.+-++++|.+--. ..-|..++|...|+-..-.+|.|.|++-+.- |++.
T Consensus 49 LahAaykGnl~~v~lll~~gaDvN~~qhg----~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrT---------- 114 (396)
T KOG1710|consen 49 LAHAAYKGNLTLVELLLELGADVNDKQHG----TLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRT---------- 114 (396)
T ss_pred HHHHHhcCcHHHHHHHHHhCCCcCccccc----ccccHHHHHHHcCCchHHHHHHhccCccccccchhhh----------
Confidence 34555789999999999999999955332 3468999999999999999999999987532 2222
Q ss_pred hccCCCCHHHHHHHHH--HHH-hhcCCCChHHHhhhhh
Q psy9003 632 KAGLFGTPEQLKYLVD--ECH-KAGLFGTPEQLKYLVD 666 (1276)
Q Consensus 632 ~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~ 666 (1276)
--|++-.|+ +|- -+|||.|-+.+.|...
T Consensus 115 -------AaqmAAFVG~H~CV~iINN~~t~~~leyyt~ 145 (396)
T KOG1710|consen 115 -------AAQMAAFVGHHECVAIINNHITIDVLEYYTR 145 (396)
T ss_pred -------HHHHHHHhcchHHHHHHhccccHHHHHHhcc
Confidence 223333333 222 2566777777776643
No 273
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=51.28 E-value=40 Score=33.83 Aligned_cols=65 Identities=15% Similarity=0.022 Sum_probs=43.2
Q ss_pred ecCceEEEEEcc--CCcEEEEE-ccCCCC----cccccccee----cCCCeEEEEcCCCCCCCcccCcccEEEEEEEEeC
Q psy9003 778 LVDECHKAGLLC--FMHVVCAA-GDFNNW----NREEFAYKK----LDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQH 846 (1276)
Q Consensus 778 ~~D~a~FalwAP--~A~~VsLv-GDFN~w----d~~~~pM~r----~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~~d 846 (1276)
..+..++++.+. .+++|.|+ +|-..| .....+|.+ +....|+++++.... ...|.|+|.+ +
T Consensus 19 ~~~~l~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~~~~~fDyye~~l~~~~~-------r~~Y~F~l~~-~ 90 (120)
T PF02903_consen 19 DGDTLHIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIASDELFDYYEATLKLPEK-------RLRYYFELED-G 90 (120)
T ss_dssp CTTEEEEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEEEESSEEEEEEEEE-TTS-------EEEEEEEEEE-T
T ss_pred CCCEEEEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEEeCCCeEEEEEEEECCCC-------eEEEEEEEEe-C
Confidence 345667778775 67888887 555543 345678877 357899999974322 2689999987 6
Q ss_pred Ceee
Q psy9003 847 GHLL 850 (1276)
Q Consensus 847 G~~~ 850 (1276)
|+..
T Consensus 91 ~~~~ 94 (120)
T PF02903_consen 91 GETY 94 (120)
T ss_dssp TEEE
T ss_pred CEEE
Confidence 6543
No 274
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=50.55 E-value=3.9e+02 Score=31.37 Aligned_cols=60 Identities=23% Similarity=0.111 Sum_probs=34.4
Q ss_pred cCCCHHHHHHHHHhhhhccCC-CChhhhhh-------hhhhhcccc---cCCCHHHHHHHHhhhhhccCCC
Q psy9003 559 LFGTPEQLKYLVDECHKAGLF-GTPEQLKY-------LVDECHKAG---LFGTPEQLKYLVDECHKAGLFG 618 (1276)
Q Consensus 559 ~~~~~e~~~~l~~~~~~~~~~-~~~~~~~~-------~~~~~~~~~---~~~~~e~~~~l~~~~~~~~~~~ 618 (1276)
.+-+++.|..|++.+...+.. .--++++. =...+.+++ -..+++.+.-|++.|...|+.+
T Consensus 81 ~~~~l~~l~~Ll~e~~~L~~~~pEi~~L~~l~~~ve~f~~~a~~~L~~~~~~~~~~le~Ll~~g~s~~v~l 151 (335)
T PF08429_consen 81 NKLTLEELEALLEEIESLPFDCPEIDQLKELLEEVEEFQSRAQEALSDPESPSLEELEELLEEGESFGVDL 151 (335)
T ss_pred ccCCHHHHHHHHHHHhcCCeeCchHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHhcccCceeC
Confidence 445666666666666555521 11122222 122233344 4578889999999999988876
No 275
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=49.69 E-value=1.2e+02 Score=35.98 Aligned_cols=77 Identities=16% Similarity=0.126 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEe-ccccCCcccCC--CcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHH
Q psy9003 1035 TPEQLKYLVDECHKAGLYVLLDVV-HSHASKNVLDG--LNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSN 1111 (1276)
Q Consensus 1035 t~eEfK~LV~alHk~GI~VILDvV-~NHt~~~~~~~--~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iids 1111 (1276)
|.+|+++||+-|.++||+||-.+- +.|+..--... +.+ .+.....+.. .......||..+|++.+++.+.
T Consensus 73 T~~di~elv~yA~~rgI~vIPEiD~PGH~~a~~~~~p~l~~-~~~~~~~~~~------~~~~~~~l~~~~~~t~~fl~~v 145 (329)
T cd06568 73 TQEDYKDIVAYAAERHITVVPEIDMPGHTNAALAAYPELNC-DGKAKPLYTG------IEVGFSSLDVDKPTTYEFVDDV 145 (329)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCcHHHHHHHHhChhhcc-CCCCCccccc------cCCCCcccCCCCHHHHHHHHHH
Confidence 789999999999999999998884 66764321000 000 0100001100 0111247899999999999999
Q ss_pred HHHHHHh
Q psy9003 1112 LRWYLDE 1118 (1276)
Q Consensus 1112 l~~Wv~e 1118 (1276)
+.-.++-
T Consensus 146 ~~E~~~~ 152 (329)
T cd06568 146 FRELAAL 152 (329)
T ss_pred HHHHHHh
Confidence 9888874
No 276
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=49.05 E-value=60 Score=31.67 Aligned_cols=60 Identities=15% Similarity=0.314 Sum_probs=37.3
Q ss_pred eEEEEEcc---CCcEEEEEc---cCCCCcccccccee---cCCCeEEEEcCCCCCCCcccCcccEEEEEEEEeCC
Q psy9003 782 CHKAGLLC---FMHVVCAAG---DFNNWNREEFAYKK---LDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHG 847 (1276)
Q Consensus 782 a~FalwAP---~A~~VsLvG---DFN~wd~~~~pM~r---~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~~dG 847 (1276)
++|++-.| ..+.|.|+| ++.+|+....+|.. ...+.|++.+.- ..|. -..|||.+...+|
T Consensus 5 v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~~l-p~~~-----~veyKyv~~~~~~ 73 (99)
T cd05809 5 QTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTVHL-PAGR-----NIEFKAIKKSKDG 73 (99)
T ss_pred EEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEEEe-cCCC-----cEEEEEEEEcCCC
Confidence 45666433 346888887 57799865534432 345899887742 2321 3678888865555
No 277
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=48.81 E-value=7.6 Score=26.30 Aligned_cols=24 Identities=29% Similarity=0.248 Sum_probs=20.7
Q ss_pred cccchhccccCCHhHHHhhccccc
Q psy9003 418 VDECHKAGLFGTPEQLKYLVDECH 441 (1276)
Q Consensus 418 vt~lh~a~~~~~~~~~~yli~~~~ 441 (1276)
-|++|.|+..++.+++++|++...
T Consensus 3 ~~~l~~~~~~~~~~~~~~ll~~~~ 26 (30)
T smart00248 3 RTPLHLAAENGNLEVVKLLLDKGA 26 (30)
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCC
Confidence 389999999999999999997654
No 278
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=48.46 E-value=83 Score=39.76 Aligned_cols=91 Identities=16% Similarity=0.173 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEeccccCCc-ccCCC-----cCC-CCCCCcccccCCCCCCCCCCCcCCCCCcHHHHH--
Q psy9003 1036 PEQLKYLVDECHKAGLYVLLDVVHSHASKN-VLDGL-----NEF-DGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLR-- 1106 (1276)
Q Consensus 1036 ~eEfK~LV~alHk~GI~VILDvV~NHt~~~-~~~~~-----~~f-~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~-- 1106 (1276)
-+++.++=+-|+++||.+|.|+.+.=.... ..|.. ... -|..|++|.. .-.+|+.+..|++.-.-+.
T Consensus 209 ~~Q~~~~k~~A~~~~I~i~gDLpv~va~~saDvW~~~~~f~~~~~~GaPPD~f~~----~GQ~Wg~p~yn~~~l~~~~y~ 284 (520)
T COG1640 209 FRQLAALKRYANDMGIGIIGDLPVGVAQDSADVWANPEYFCLDESAGAPPDVFNA----QGQDWGLPPYNPEALKKDGYD 284 (520)
T ss_pred HHHHHHHHHHHHhcCceEeecccceecCCchhhhcCcccccccccCCCCCCcccc----cccccCCCCCCHHHHHHcccH
Confidence 355666667778899999999987633221 12211 111 1444555543 1357877765554322221
Q ss_pred HHHHHHHHHHHhCCCcEEccCCcccc
Q psy9003 1107 FLLSNLRWYLDEYQFDGFRFDGVTSM 1132 (1276)
Q Consensus 1107 ~Iidsl~~Wv~eygVDGFRfD~a~~L 1132 (1276)
..++-++.=++ .+|+.|+|-...+
T Consensus 285 wwierlr~~~~--~~~~lRIDHf~Gl 308 (520)
T COG1640 285 WWIERLRANLK--LYGILRIDHFRGL 308 (520)
T ss_pred HHHHHHHHHHH--hcCeeeeeeecch
Confidence 23444444444 6888999966544
No 279
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=45.57 E-value=62 Score=31.60 Aligned_cols=56 Identities=16% Similarity=0.121 Sum_probs=37.0
Q ss_pred EEEEEccC--CcEEEEEcc---CCCCccc-cccceecCCCeEEEEcCCCCCCCcccCcccEEEEEEEE
Q psy9003 783 HKAGLLCF--MHVVCAAGD---FNNWNRE-EFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRN 844 (1276)
Q Consensus 783 ~FalwAP~--A~~VsLvGD---FN~wd~~-~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~~ 844 (1276)
+|++-+++ .+.+.|+|+ +.+|++. .++|...++..|++.+.-.. + ....|+|.+..
T Consensus 3 ~F~i~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~~~~~W~~~v~lp~-~-----~~veYKY~i~~ 64 (100)
T cd05817 3 TFKIHYPTQFGEAVYISGNCNQLGNWNPSKAKRMQWNEGDLWTVDVGIPE-S-----VYIEYKYFVSN 64 (100)
T ss_pred EEEEEEEcCCCCEEEEEeCcHHHCCCCccccCcccCCCCCCEEEEEEECC-C-----CcEEEEEEEEe
Confidence 45554443 367888876 5688864 57898777889988774221 2 23688888854
No 280
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=43.86 E-value=2.2e+02 Score=33.30 Aligned_cols=73 Identities=16% Similarity=0.121 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEe-ccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHH
Q psy9003 1035 TPEQLKYLVDECHKAGLYVLLDVV-HSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLR 1113 (1276)
Q Consensus 1035 t~eEfK~LV~alHk~GI~VILDvV-~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~ 1113 (1276)
|.+|++++++-|.++||+||-.+- +.|+..--. . +.|-...+... ....||..+|++.+++.+.+.
T Consensus 58 T~~ei~ei~~yA~~~gI~vIPeid~pGH~~~~l~-----~----~~~~~l~~~~~----~~~~l~~~~~~t~~fi~~li~ 124 (301)
T cd06565 58 TKEEIREIDDYAAELGIEVIPLIQTLGHLEFILK-----H----PEFRHLREVDD----PPQTLCPGEPKTYDFIEEMIR 124 (301)
T ss_pred CHHHHHHHHHHHHHcCCEEEecCCCHHHHHHHHh-----C----cccccccccCC----CCCccCCCChhHHHHHHHHHH
Confidence 689999999999999999997663 566533110 0 11111000000 124789999999999999999
Q ss_pred HHHHhCC
Q psy9003 1114 WYLDEYQ 1120 (1276)
Q Consensus 1114 ~Wv~eyg 1120 (1276)
-.++-|.
T Consensus 125 ev~~~f~ 131 (301)
T cd06565 125 QVLELHP 131 (301)
T ss_pred HHHHhCC
Confidence 9998644
No 281
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=43.27 E-value=4.1e+02 Score=35.78 Aligned_cols=24 Identities=21% Similarity=0.100 Sum_probs=14.4
Q ss_pred HHHHHHH-cCCEEEEEEeccccCCc
Q psy9003 1042 LVDECHK-AGLYVLLDVVHSHASKN 1065 (1276)
Q Consensus 1042 LV~alHk-~GI~VILDvV~NHt~~~ 1065 (1276)
+++++++ .|+.+-...|.......
T Consensus 570 l~~al~e~lG~~~~V~a~vg~~~~~ 594 (824)
T PRK07764 570 LVTALAEELGGDWQVEAVVGPAPGA 594 (824)
T ss_pred HHHHHHHHhCCceEEEEEeCCCccc
Confidence 3344443 57777777777765543
No 282
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=43.08 E-value=35 Score=40.71 Aligned_cols=86 Identities=14% Similarity=0.159 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCC-CcCCCCCcHHHHHHHHHHHHHH
Q psy9003 1037 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWD-SRLFNYSEIEVLRFLLSNLRWY 1115 (1276)
Q Consensus 1037 eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~-g~~LN~~np~Vr~~Iidsl~~W 1115 (1276)
..|.++|+.|+++||+|||-+. .++.+. |. . ...|.--..+.+|....++ ....++.+|.+|+++...++..
T Consensus 47 ~~lD~~l~~a~~~Gi~viL~~~-~~~~P~--Wl---~-~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l 119 (374)
T PF02449_consen 47 SWLDRVLDLAAKHGIKVILGTP-TAAPPA--WL---Y-DKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRAL 119 (374)
T ss_dssp HHHHHHHHHHHCTT-EEEEEEC-TTTS-H--HH---H-CCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCeEEEEec-cccccc--ch---h-hhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHH
Confidence 5688999999999999999775 222222 10 0 0011111112223222222 2345778999998888777666
Q ss_pred HHhCC----CcEEccCCc
Q psy9003 1116 LDEYQ----FDGFRFDGV 1129 (1276)
Q Consensus 1116 v~eyg----VDGFRfD~a 1129 (1276)
++.|+ |-|+-+|--
T Consensus 120 ~~~y~~~p~vi~~~i~NE 137 (374)
T PF02449_consen 120 AERYGDHPAVIGWQIDNE 137 (374)
T ss_dssp HHHHTTTTTEEEEEECCS
T ss_pred HhhccccceEEEEEeccc
Confidence 66554 778888754
No 283
>KOG1710|consensus
Probab=42.74 E-value=40 Score=39.36 Aligned_cols=71 Identities=15% Similarity=0.062 Sum_probs=54.7
Q ss_pred hhhhcccccCCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhcc----CCCChhhhhh
Q psy9003 513 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG----LFGTPEQLKY 587 (1276)
Q Consensus 513 ~t~~~~a~~~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~----~~~~~~~~~~ 587 (1276)
.+...-|---|+++.+++|.+-++++|-+.-- .+-|..+-|-..||-.+-.+|.|.|++-+ |++|--|+-+
T Consensus 46 Ms~LahAaykGnl~~v~lll~~gaDvN~~qhg----~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAA 120 (396)
T KOG1710|consen 46 MSVLAHAAYKGNLTLVELLLELGADVNDKQHG----TLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAA 120 (396)
T ss_pred ccHHHHHHhcCcHHHHHHHHHhCCCcCccccc----ccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHH
Confidence 45556666789999999999999999933211 24456666778999999999999999977 6677776666
No 284
>KOG0511|consensus
Probab=42.67 E-value=20 Score=42.91 Aligned_cols=55 Identities=22% Similarity=0.284 Sum_probs=32.3
Q ss_pred hhhhcccccCCCHHHHHHHHhhhhhcC-CCCCcc-hhhhhhhhhhccccCCCHHHHHHHHHhhh
Q psy9003 513 VDECHKAGLFGTPEQLKYLVDECHKAG-LFGTPE-QLKYLVDECHKAGLFGTPEQLKYLVDECH 574 (1276)
Q Consensus 513 ~t~~~~a~~~g~~e~~~~lv~~~~~~~-~~~t~~-~l~~~~~~~~~~~~~~~~e~~~~l~~~~~ 574 (1276)
+...-+||+.|.++.|+|||+-+--+| |..-|. .|-+ |..-|-..++|+|.+-||
T Consensus 37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~l-------AsLcGHe~vvklLLenGA 93 (516)
T KOG0511|consen 37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYL-------ASLCGHEDVVKLLLENGA 93 (516)
T ss_pred hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHH-------HHHcCcHHHHHHHHHcCC
Confidence 445556777777777777777554444 333332 2333 235677777777776554
No 285
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=41.27 E-value=1.6e+02 Score=34.40 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEE
Q psy9003 1035 TPEQLKYLVDECHKAGLYVLLDV 1057 (1276)
Q Consensus 1035 t~eEfK~LV~alHk~GI~VILDv 1057 (1276)
.-.+|.+-|+.|+++|++|+|=+
T Consensus 57 ~c~~~~~dI~~cq~~G~KVlLSI 79 (280)
T cd02877 57 NCPQLGADIKHCQSKGKKVLLSI 79 (280)
T ss_pred cchhHHHHHHHHHHCCCEEEEEc
Confidence 34689999999999999999954
No 286
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=41.06 E-value=65 Score=37.49 Aligned_cols=55 Identities=18% Similarity=0.214 Sum_probs=38.9
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCC-chHHHHHHHHHHHHHhh
Q psy9003 1100 SEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVD-TDALIYLMVANKFLHDK 1173 (1276)
Q Consensus 1100 ~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d-~~a~~Fl~el~~~Vr~~ 1173 (1276)
.++..|+.+++++..|+++|+.||+-+|--..-. ...+ ..-..|++++++.+++.
T Consensus 87 ~~~~~r~~fi~~i~~~~~~~~~DGidiDwE~~~~-------------------~~~d~~~~~~ll~~lr~~l~~~ 142 (334)
T smart00636 87 SDPASRKKFIDSIVSFLKKYGFDGIDIDWEYPGA-------------------RGDDRENYTALLKELREALDKE 142 (334)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEECCcCCCC-------------------CccHHHHHHHHHHHHHHHHHHh
Confidence 4578899999999999999999999999422100 0011 12356888898888764
No 287
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=40.52 E-value=74 Score=38.04 Aligned_cols=79 Identities=18% Similarity=0.122 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEe-ccccCCcccCCCcCCCCCCC-cccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHH
Q psy9003 1035 TPEQLKYLVDECHKAGLYVLLDVV-HSHASKNVLDGLNEFDGTQA-CFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNL 1112 (1276)
Q Consensus 1035 t~eEfK~LV~alHk~GI~VILDvV-~NHt~~~~~~~~~~f~g~~~-~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl 1112 (1276)
|.+|++++|+-|.++||+||-.+- +.|+..--... ..+..... ..+.. ........||..+|.+.+++.+.+
T Consensus 84 T~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~~~-pel~~~~~~~~~~~-----~~~~~~~~L~~~~~~t~~f~~~ll 157 (357)
T cd06563 84 TQEEIREIVAYAAERGITVIPEIDMPGHALAALAAY-PELGCTGGPGSVVS-----VQGVVSNVLCPGKPETYTFLEDVL 157 (357)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCchhHHHHHHhC-ccccCCCCCCcccc-----ccCcCCCccCCCChhHHHHHHHHH
Confidence 789999999999999999999884 67764321100 00000000 00000 001123578999999999999999
Q ss_pred HHHHHhC
Q psy9003 1113 RWYLDEY 1119 (1276)
Q Consensus 1113 ~~Wv~ey 1119 (1276)
.-.++-|
T Consensus 158 ~E~~~lF 164 (357)
T cd06563 158 DEVAELF 164 (357)
T ss_pred HHHHHhC
Confidence 9988854
No 288
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=38.10 E-value=67 Score=42.23 Aligned_cols=90 Identities=16% Similarity=0.243 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHcCCEEEEEEeccccCCcc-cCC-CcCC-----CCCCCcccccCCCCCCCCCCCcCCCCCcHH--HHHH
Q psy9003 1037 EQLKYLVDECHKAGLYVLLDVVHSHASKNV-LDG-LNEF-----DGTQACFFHDGPRGTHPLWDSRLFNYSEIE--VLRF 1107 (1276)
Q Consensus 1037 eEfK~LV~alHk~GI~VILDvV~NHt~~~~-~~~-~~~f-----~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~--Vr~~ 1107 (1276)
.+++++-+.|+++||.++-|+.+.=...+. .|. ...| -|..|++|.. .| .+|+.+..|+..-. =-+.
T Consensus 274 ~Q~~~~~~yA~~~GI~L~GDLPIgVa~dSaDvWa~p~lF~ld~~aGAPPD~FS~--~G--QnWG~P~YnW~~l~~dgY~W 349 (745)
T PLN03236 274 RQLRRAAAHAAAKGVILKGDLPIGVDKASVDTWMHPKLFRMDTSTGAPPDAFDA--NG--QNWGFPTYDWEEMAEDDYAW 349 (745)
T ss_pred HHHHHHHHHHHHCCCEEEEEeeceeCCCcHHHhcCHHHhcCCCCcCCCCCCCCc--cc--CcCCCCCcCHHHHHhcCcHH
Confidence 567778888999999999999876332221 121 1111 3555677743 23 57887777765211 0122
Q ss_pred HHHHHHHHHHhCCCcEEccCCcccc
Q psy9003 1108 LLSNLRWYLDEYQFDGFRFDGVTSM 1132 (1276)
Q Consensus 1108 Iidsl~~Wv~eygVDGFRfD~a~~L 1132 (1276)
..+.+++=++ .+|++|+|-+..+
T Consensus 350 Wr~Rlr~~~~--~~dalRIDH~~Gf 372 (745)
T PLN03236 350 WRARMQHLEQ--FFSAIRIDHILGF 372 (745)
T ss_pred HHHHHHHHHH--hCCeEEeechhhh
Confidence 3444444333 4788999965443
No 289
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=37.98 E-value=54 Score=38.59 Aligned_cols=75 Identities=17% Similarity=0.273 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEe-ccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHH
Q psy9003 1035 TPEQLKYLVDECHKAGLYVLLDVV-HSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLR 1113 (1276)
Q Consensus 1035 t~eEfK~LV~alHk~GI~VILDvV-~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~ 1113 (1276)
|.+|+|++|+-|.++||+||-.+- +.|+..--. .+ +. +..... ........||..+|++.+++.+.+.
T Consensus 80 T~~di~eiv~yA~~rgI~vIPEID~PGH~~a~~~----~~----pe-l~~~~~--~~~~~~~~l~~~~~~t~~f~~~l~~ 148 (326)
T cd06564 80 TKEEFKELIAYAKDRGVNIIPEIDSPGHSLAFTK----AM----PE-LGLKNP--FSKYDKDTLDISNPEAVKFVKALFD 148 (326)
T ss_pred cHHHHHHHHHHHHHcCCeEeccCCCcHHHHHHHH----hh----HH-hcCCCc--ccCCCcccccCCCHHHHHHHHHHHH
Confidence 789999999999999999998873 666643210 00 00 000000 0111235789999999999999999
Q ss_pred HHHHhCC
Q psy9003 1114 WYLDEYQ 1120 (1276)
Q Consensus 1114 ~Wv~eyg 1120 (1276)
-.++-|.
T Consensus 149 E~~~~f~ 155 (326)
T cd06564 149 EYLDGFN 155 (326)
T ss_pred HHHHhcC
Confidence 9888654
No 290
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=37.76 E-value=1.1e+02 Score=29.08 Aligned_cols=59 Identities=17% Similarity=0.362 Sum_probs=37.5
Q ss_pred EEEEEc--cCCcEEEEEccC---CCCcc-ccccceecC-CCeEEEEcCCCC-CCCcccCcccEEEEEEEEeC
Q psy9003 783 HKAGLL--CFMHVVCAAGDF---NNWNR-EEFAYKKLD-FGKWELVLPPNP-DGSCKLTHLSQVKLVVRNQH 846 (1276)
Q Consensus 783 ~FalwA--P~A~~VsLvGDF---N~wd~-~~~pM~r~~-~GVWsl~Ip~~~-~G~~~i~hGs~YkYrV~~~d 846 (1276)
+|++-. ...+.+.|+|+. .+|++ ..++|...+ ++.|++.++-.. .+ .-..|+|.+...+
T Consensus 3 ~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~W~~~v~~~~~~~-----~~~~yKy~~~~~~ 69 (96)
T cd05467 3 RFQVRCTTQFGQSVYVVGSHPELGNWDPAKALRLNTSNSYPLWTGEIPLPAPEG-----QVIEYKYVIVDDD 69 (96)
T ss_pred EEEEEEECCCCCEEEEEeCcHHhCCcChhcCccccCCCCCCcEEEEEEecCCCC-----CeEEEEEEEECCC
Confidence 455543 455678888764 47886 457898776 899998775221 11 1257888876443
No 291
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=37.48 E-value=1.3e+02 Score=35.82 Aligned_cols=129 Identities=12% Similarity=0.091 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCC---CCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHH
Q psy9003 1035 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDG---TQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSN 1111 (1276)
Q Consensus 1035 t~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g---~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iids 1111 (1276)
.++.||++++++|+.|-++++-+ +|.+............ ..+...... ...++.+. +++..+.|.+.
T Consensus 78 ~i~~~k~l~~~vh~~Ga~i~~QL--~H~G~~~~~~~~~~~~~~psa~~~~~~~----~~~~~~~~----~~mt~~eI~~i 147 (341)
T PF00724_consen 78 QIPGLKKLADAVHAHGAKIIAQL--WHAGRQANPEYSGDPPVGPSAPSALPSP----IKFMGYPP----REMTEEEIEEI 147 (341)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEEE--E--GGGSSGCCSGGGCEESSCSSSSSTT----TTETSCEE----EE--HHHHHHH
T ss_pred HHHHHHHHHHHHHhcCccceeec--cccccccCcccCCCCccCcccccccCcc----cccCCCCC----eeCCHHHHHHH
Confidence 37899999999999999999887 5666543211110000 000000000 00000001 22333333333
Q ss_pred HHH------HHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCC
Q psy9003 1112 LRW------YLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPE 1176 (1276)
Q Consensus 1112 l~~------Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~Pd 1176 (1276)
+.- .+.+-|+||.-+-++..-+-..+ +.+ +.......+|+. -.....|+.++.+.||+.-++
T Consensus 148 i~~f~~AA~~A~~AGfDGVEIH~ahGyLl~qF-LSp-~~N~RtDeYGGs-~ENR~Rf~~Eii~aIr~~vg~ 215 (341)
T PF00724_consen 148 IEDFAQAARRAKEAGFDGVEIHAAHGYLLSQF-LSP-LTNRRTDEYGGS-LENRARFLLEIIEAIREAVGP 215 (341)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEESTTSHHHHH-HST-TT---SSTTSSS-HHHHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHhccCeEeecccchhhhhhe-eee-ccCCCchhhhhh-hchhhHHHHHHHHHHHHHhcC
Confidence 222 34568999999998763221100 001 111112223321 123567888888888877554
No 292
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=37.34 E-value=4e+02 Score=30.38 Aligned_cols=50 Identities=16% Similarity=0.020 Sum_probs=20.8
Q ss_pred HHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChh
Q psy9003 567 KYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPE 621 (1276)
Q Consensus 567 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~ 621 (1276)
+++...+++.|+.-+++.+++.+.. ..|++-.+--.++.+...+.++|.+
T Consensus 168 ~~l~~~~~~~~~~i~~~al~~l~~~-----~~gd~r~~~~~l~~~~~~~~~it~~ 217 (319)
T PRK00440 168 ERLRYIAENEGIEITDDALEAIYYV-----SEGDMRKAINALQAAAATGKEVTEE 217 (319)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH-----cCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 3444444444444444444443321 2344444444444443333333333
No 293
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=37.34 E-value=32 Score=44.21 Aligned_cols=49 Identities=8% Similarity=0.097 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhcccCCCCCeeEeecCCCeEEEEEcC------cEEEEEeCCCC
Q psy9003 1215 ALFDAAMNTTEERFKWLSADPGYVSTKHEGDKVIIFERA------GLLFAFNFNGT 1264 (1276)
Q Consensus 1215 ~~F~~~Ln~l~~~~p~L~~~~~~~l~nHD~~RVlsf~R~------~ll~v~N~~~~ 1264 (1276)
..+.++|.++|+.+|... +..+....-+.+-|+++.+. .++.++||+..
T Consensus 579 l~~l~~il~vR~~~~i~~-~~~~~~~~~~~~gvLa~v~~l~~~~~~~L~v~Nfs~~ 633 (688)
T TIGR02455 579 ACKLKKILAVRQAYDIAA-SKQILIPDVQAPGLLVMVHELPAGKGIQITALNFGAD 633 (688)
T ss_pred HHHHHHHHHHHHhCCccc-CceeeecCCCCCcEEEEEEEcCCCCceEEEeeccCCC
Confidence 667888999999999754 33456667788889999772 39999999875
No 294
>PTZ00445 p36-lilke protein; Provisional
Probab=37.30 E-value=44 Score=37.67 Aligned_cols=42 Identities=19% Similarity=0.282 Sum_probs=35.3
Q ss_pred CCChHHHHHHHHHHHHhcCc------------------C-------------CCHHHHHHHHHHHHHcCCCCCc
Q psy9003 141 LFGTPEQLKYLVDECHKAGL------------------F-------------GTPEQLKYLVDECHKAGLFGTP 183 (1276)
Q Consensus 141 ~~~y~e~a~~li~y~~~~~y------------------y-------------gtp~~l~~~vd~~h~~~i~~~~ 183 (1276)
-.|++|.|+.++..+++.|. | +||+ |+.++.+|.++||+-++
T Consensus 24 ~~~~~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpe-fk~~~~~l~~~~I~v~V 96 (219)
T PTZ00445 24 HLNPHESADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPD-FKILGKRLKNSNIKISV 96 (219)
T ss_pred cCCHHHHHHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHH-HHHHHHHHHHCCCeEEE
Confidence 34899999999999999998 2 4554 99999999999999544
No 295
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=36.59 E-value=83 Score=29.93 Aligned_cols=49 Identities=27% Similarity=0.352 Sum_probs=30.0
Q ss_pred EEEEEEcc--CCceEEEEeecc-CCCcc------e------EEEEEccCcccc--ceEEEEEecCCC
Q psy9003 75 VRCFEWAP--SAQQLYLTGNVS-LTPWS------I------MEEASLSSIKLI--QSIQYILTGVFG 124 (1276)
Q Consensus 75 ~~f~~wAP--~A~~v~l~gdfn-~~~w~------m------~~~~~~~~~~~g--~~yky~i~~~~g 124 (1276)
++|++=+. -.+.|+|+|+.. .++|+ | .|++.+ .+..+ --|||.+...+|
T Consensus 3 v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~~~~~W~~~v-~l~~~~~~eYKy~~~~~~~ 68 (95)
T cd05808 3 VTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAATYPVWSGTV-DLPAGTAIEYKYIKKDGSG 68 (95)
T ss_pred EEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCCCCCCEEEEE-EeCCCCeEEEEEEEECCCC
Confidence 45555432 357999999644 47776 5 797766 33444 456666555444
No 296
>KOG3676|consensus
Probab=36.21 E-value=43 Score=43.63 Aligned_cols=174 Identities=14% Similarity=0.082 Sum_probs=104.2
Q ss_pred CCCHHHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHhhhhcc------CCCChhh-hh--------
Q psy9003 522 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG------LFGTPEQ-LK-------- 586 (1276)
Q Consensus 522 ~g~~e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~------~~~~~~~-~~-------- 586 (1276)
.+.-|.++.|.+++-+.=+.-.-+..-|.-|..|=|.+.-+.|-+++|++.+|+.| -+.-++| .-
T Consensus 156 ~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G 235 (782)
T KOG3676|consen 156 DGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTG 235 (782)
T ss_pred hhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcc
Confidence 34447777777777765444444455566667777778888888888888888877 3333332 11
Q ss_pred --h-hhhhhcccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHHHHHHHHHHhhcCCCChHHHhh
Q psy9003 587 --Y-LVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKY 663 (1276)
Q Consensus 587 --~-~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (1276)
| -=--.+.|.=-++.|.+.||++.+|++|.-=+.- =+-+|--..| -+.-..|.+=+.|.+ -++-+.|
T Consensus 236 ~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~G-----NTVLH~lVi~----~~~~My~~~L~~ga~-~l~~v~N 305 (782)
T KOG3676|consen 236 YFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNG-----NTVLHMLVIH----FVTEMYDLALELGAN-ALEHVRN 305 (782)
T ss_pred eeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCC-----ChHHHHHHHH----HHHHHHHHHHhcCCC-ccccccc
Confidence 0 0000122222468999999999888885422211 1111111111 233344455555555 4555555
Q ss_pred h--hhhhhhcccCCChhHHHHHHHH-HHhhccCCChhHHHhhHHH
Q psy9003 664 L--VDECHKAGLFGTPEQLKYLVDE-CHKAGLFGTPEQLKYLVDE 705 (1276)
Q Consensus 664 ~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 705 (1276)
. ++-++-|+.-|-.|+.++++.- .+.-=+|+.+--.-|.+.+
T Consensus 306 ~qgLTPLtLAaklGk~emf~~ile~~k~~~W~YGpvtsslYpL~~ 350 (782)
T KOG3676|consen 306 NQGLTPLTLAAKLGKKEMFQHILERRKFTDWAYGPVTSSLYPLNS 350 (782)
T ss_pred cCCCChHHHHHHhhhHHHHHHHHHhhcccceeecccccccccchh
Confidence 4 5589999999999999999886 5555567766655566554
No 297
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=36.03 E-value=68 Score=37.96 Aligned_cols=63 Identities=19% Similarity=0.281 Sum_probs=41.5
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCc-hHHHHHHHHHHHHHhhCCCeE
Q psy9003 1100 SEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDT-DALIYLMVANKFLHDKYPEII 1178 (1276)
Q Consensus 1100 ~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~-~a~~Fl~el~~~Vr~~~Pdvi 1178 (1276)
.++..|+.+++++..|+++|++||+-+|--.--. .+ +...+. .-..|++++++.+++..++..
T Consensus 92 ~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~p~~-----~~-----------~~~~d~~~~~~ll~~lr~~l~~~~~~~~ 155 (362)
T cd02872 92 ASPENRKTFIKSAIAFLRKYGFDGLDLDWEYPGQ-----RG-----------GPPEDKENFVTLLKELREAFEPEAPRLL 155 (362)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeeeeeecccc-----CC-----------CCHHHHHHHHHHHHHHHHHHHhhCcCeE
Confidence 4577899999999999999999999999421100 00 000111 235688899988877644543
No 298
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=35.32 E-value=4.3e+02 Score=30.48 Aligned_cols=90 Identities=16% Similarity=0.077 Sum_probs=47.8
Q ss_pred HHHHHHHHhhhhccCCCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhhccCCCChhhhhhhHHHhhhccCCCCHHHHH
Q psy9003 564 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLK 643 (1276)
Q Consensus 564 e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (1276)
+-.++|..+++..|+.-+++.+++.+..+ .|++.++-..++....-+.++|.++.+..+.... ..+.+-
T Consensus 188 ~~~~~l~~~~~~~~~~~~~~al~~l~~~~-----~gdlr~l~~~l~~~~~~~~~It~~~v~~~~~~~~------~~~~i~ 256 (337)
T PRK12402 188 ELVDVLESIAEAEGVDYDDDGLELIAYYA-----GGDLRKAILTLQTAALAAGEITMEAAYEALGDVG------TDEVIE 256 (337)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHc-----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCC------CHHHHH
Confidence 33445566666667777777777666433 5777777666666554444566664443332111 123444
Q ss_pred HHHHHHHhhcCCCChHHHhhhhhhh
Q psy9003 644 YLVDECHKAGLFGTPEQLKYLVDEC 668 (1276)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (1276)
-++|++.. +...++...+..+
T Consensus 257 ~l~~ai~~----~~~~~a~~~l~~l 277 (337)
T PRK12402 257 SLLDAAEA----GDFTDARKTLDDL 277 (337)
T ss_pred HHHHHHHc----CCHHHHHHHHHHH
Confidence 55555544 4455444444443
No 299
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=35.09 E-value=65 Score=37.67 Aligned_cols=79 Identities=20% Similarity=0.248 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEe-ccccCCcccCCCcCCCC----CCCcccccCCCCCCCCCC--CcCCCCCcHHHHHH
Q psy9003 1035 TPEQLKYLVDECHKAGLYVLLDVV-HSHASKNVLDGLNEFDG----TQACFFHDGPRGTHPLWD--SRLFNYSEIEVLRF 1107 (1276)
Q Consensus 1035 t~eEfK~LV~alHk~GI~VILDvV-~NHt~~~~~~~~~~f~g----~~~~Yy~~~~~g~~~~W~--g~~LN~~np~Vr~~ 1107 (1276)
|.+|++++|+.|+++||+||-.+- +.|+..--...+ .+.. .+..+.. ...+. ...||..+|.+.++
T Consensus 71 T~~di~~lv~yA~~~gI~VIPeid~PGH~~~~l~~~p-~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~t~~~ 143 (351)
T PF00728_consen 71 TKEDIRELVAYAKERGIEVIPEIDTPGHAEAWLKAYP-ELGCSAWPEDKSWPN------STCWYPDNGVLDPSNPETYEF 143 (351)
T ss_dssp EHHHHHHHHHHHHHTT-EEEEEEEESSS-HHHHHHHH-HHCCCHTTCSSSCEE------EETTSEEEEEE-TTSHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCceeeeccCchHHHHHHHhCc-hhhcccccccccccc------ccccCCCcccCCCCcHHHHHH
Confidence 679999999999999999999984 778754211000 0000 0000100 01111 13689999999999
Q ss_pred HHHHHHHHHHhCC
Q psy9003 1108 LLSNLRWYLDEYQ 1120 (1276)
Q Consensus 1108 Iidsl~~Wv~eyg 1120 (1276)
+.+.+.-.+.-|.
T Consensus 144 ~~~l~~e~~~~f~ 156 (351)
T PF00728_consen 144 LKDLLDEVADLFP 156 (351)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhCC
Confidence 9999999998755
No 300
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=34.79 E-value=73 Score=36.79 Aligned_cols=64 Identities=23% Similarity=0.283 Sum_probs=41.8
Q ss_pred cHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCC-chHHHHHHHHHHHHHhhC----C
Q psy9003 1101 EIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVD-TDALIYLMVANKFLHDKY----P 1175 (1276)
Q Consensus 1101 np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d-~~a~~Fl~el~~~Vr~~~----P 1175 (1276)
++.-|+-+++++.-|+++|++||+-||.-.... .+ ...+ ..-..|++++++.+++.. .
T Consensus 96 ~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~----------~~-------~~~~~~~~~~~l~~L~~~l~~~~~~~~~ 158 (343)
T PF00704_consen 96 NPAKRQNFINNIVSFLKKYGFDGIDIDWEYPSS----------SG-------DPQDKDNYTAFLKELRKALKRANRSGKG 158 (343)
T ss_dssp SHHHHHHHHHHHHHHHHHHT-SEEEEEESSTTS----------TS-------STTHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred cHHHHHHHHHhhhhhhcccCcceeeeeeeeccc----------cc-------cchhhhhhhhhhhhhhhhhcccccccce
Confidence 457789999999999999999999998522110 00 0001 123568899998888752 3
Q ss_pred CeEEEE
Q psy9003 1176 EIITIA 1181 (1276)
Q Consensus 1176 dvilIA 1181 (1276)
-.+.++
T Consensus 159 ~~ls~a 164 (343)
T PF00704_consen 159 YILSVA 164 (343)
T ss_dssp SEEEEE
T ss_pred eEEeec
Confidence 455666
No 301
>PLN03059 beta-galactosidase; Provisional
Probab=34.68 E-value=4.3e+02 Score=35.54 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEE
Q psy9003 1034 GTPEQLKYLVDECHKAGLYVLLD 1056 (1276)
Q Consensus 1034 Gt~eEfK~LV~alHk~GI~VILD 1056 (1276)
.+..||.++++.|++.||.||+=
T Consensus 95 ~G~~DL~~Fl~la~e~GLyvilR 117 (840)
T PLN03059 95 EDRYDLVKFIKVVQAAGLYVHLR 117 (840)
T ss_pred cchHHHHHHHHHHHHcCCEEEec
Confidence 34689999999999999999985
No 302
>KOG0511|consensus
Probab=34.23 E-value=39 Score=40.72 Aligned_cols=54 Identities=20% Similarity=0.314 Sum_probs=38.5
Q ss_pred hhhhccccCCCHHHHHHHHHhhhhcc-C--CCChhhhhhhhhhhcccccCCCHHHHHHHHhhhhh
Q psy9003 552 DECHKAGLFGTPEQLKYLVDECHKAG-L--FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHK 613 (1276)
Q Consensus 552 ~~~~~~~~~~~~e~~~~l~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~ 613 (1276)
.+.-+||+-|.++.|++||+-+--+| + ....+|.- +| .-|+.+.+|+|++-||=
T Consensus 38 ~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~l-As-------LcGHe~vvklLLenGAi 94 (516)
T KOG0511|consen 38 GELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYL-AS-------LCGHEDVVKLLLENGAI 94 (516)
T ss_pred HHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHH-HH-------HcCcHHHHHHHHHcCCc
Confidence 44567779999999999999766555 2 22233332 23 56999999999987763
No 303
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=33.59 E-value=70 Score=39.43 Aligned_cols=48 Identities=17% Similarity=0.152 Sum_probs=37.5
Q ss_pred cHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCC
Q psy9003 1101 EIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPE 1176 (1276)
Q Consensus 1101 np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~Pd 1176 (1276)
+|.++++|.+-.+.-++ -++|||+|-...- ++..-+.+-++.|+++|+
T Consensus 375 sP~LW~~M~~Yt~~~A~--iF~G~RiDNCHST--------------------------PlhVaeylLd~AR~v~Pn 422 (423)
T PF14701_consen 375 SPFLWKHMKEYTELMAK--IFHGFRIDNCHST--------------------------PLHVAEYLLDAARKVNPN 422 (423)
T ss_pred CHHHHHHHHHHHHHHHH--hcCeeeeecCCCC--------------------------cHHHHHHHHHHHHhhCCC
Confidence 79999999999998888 6899999975533 344555566677888887
No 304
>KOG3609|consensus
Probab=33.56 E-value=63 Score=42.44 Aligned_cols=126 Identities=13% Similarity=-0.021 Sum_probs=76.0
Q ss_pred ccccCCCHHHHHHHhhhhhc--cCCCCcccchhhhhccccccccCCChhhhHHhhhhhccccCCCChhhHHHHHhhhccc
Q psy9003 309 KAGLFGTPEQLKYLVDECHK--AGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA 386 (1276)
Q Consensus 309 ~a~~~gsi~~l~~Lv~~~~~--~~~~~~~~~~~~~~~~~~~a~~~g~ie~~~yLi~~~h~~~~~~~~e~~~~~~~~~~~a 386 (1276)
.|...|.+=+++-..++.+- .|+|-.|-+.-.| .+.|.--.++|++-+|.+---+. .|-+.+.|..
T Consensus 31 ~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~a---l~iai~nenle~~eLLl~~~~~~-----gdALL~aI~~---- 98 (822)
T KOG3609|consen 31 LAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLA---LHIAIDNENLELQELLLDTSSEE-----GDALLLAIAV---- 98 (822)
T ss_pred HHHHcCChHHHHHHHHhccccccchhccChHhhhc---eecccccccHHHHHHHhcCcccc-----chHHHHHHHH----
Confidence 45556777777766666554 4444444333222 23444455677777775532111 3434444433
Q ss_pred ccCCChhHHHHHhhhcccc-----cCCCChhhhhcccccchhccccCCHhHHHhhcccccccccCCCh
Q psy9003 387 GLFGTPEQLKYLVDECHKA-----GLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP 449 (1276)
Q Consensus 387 ~~~~~id~vkyLi~~~h~~-----~~~~~~~~~~~~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~~ 449 (1276)
|.-+.|..|++--.-. .+..+..--+-++||+-.||..++.|+|+.|++-++|.+.-+++
T Consensus 99 ---~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~PH~~ 163 (822)
T KOG3609|consen 99 ---GSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIPHDI 163 (822)
T ss_pred ---HHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCCccc
Confidence 6777777777432222 12222222345679999999999999999999999999887764
No 305
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=33.32 E-value=1.5e+02 Score=28.42 Aligned_cols=55 Identities=16% Similarity=0.277 Sum_probs=36.7
Q ss_pred eEEEEEccCC---cEEEEEcc---CCCCccccccceecCCCeEEEEcCCCCCCCcccCcccEEEEEEE
Q psy9003 782 CHKAGLLCFM---HVVCAAGD---FNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVR 843 (1276)
Q Consensus 782 a~FalwAP~A---~~VsLvGD---FN~wd~~~~pM~r~~~GVWsl~Ip~~~~G~~~i~hGs~YkYrV~ 843 (1276)
+.|++-.|+. +.+.|+|+ +.+|+. ..+|...+.+.|++.+.- +.+. ...|+|.+.
T Consensus 3 v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~-~~~l~~~~~~~W~~~v~l-p~~~-----~ieYky~~~ 63 (95)
T cd05813 3 VTFRVHYITHSDAQLVAVTGDHEELGSWHS-YIPLQYVKDGFWSASVSL-PVDT-----HVEWKFVLV 63 (95)
T ss_pred EEEEEEeeeCCCCeEEEEEcChHHHCCCCc-cccCcCCCCCCEEEEEEe-cCCC-----cEEEEEEEE
Confidence 5688877753 44567765 457885 689987778899877742 2221 368888774
No 306
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=32.97 E-value=1.1e+02 Score=35.68 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=26.2
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCcEEccCC
Q psy9003 1100 SEIEVLRFLLSNLRWYLDEYQFDGFRFDG 1128 (1276)
Q Consensus 1100 ~np~Vr~~Iidsl~~Wv~eygVDGFRfD~ 1128 (1276)
.+|..|+.+++++.-|+++||+||.-+|-
T Consensus 88 ~~~~~R~~fi~siv~~l~~~~fDGidiDW 116 (299)
T cd02879 88 SDPTARKAFINSSIKVARKYGFDGLDLDW 116 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceeecc
Confidence 46788999999999999999999999993
No 307
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=32.64 E-value=4.1e+02 Score=32.23 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEecccc-CCc
Q psy9003 1036 PEQLKYLVDECHKAGLYVLLDVVHSHA-SKN 1065 (1276)
Q Consensus 1036 ~eEfK~LV~alHk~GI~VILDvV~NHt-~~~ 1065 (1276)
+..||+|++++|+.|-++++-+ +|. +..
T Consensus 82 i~~~k~l~davh~~G~~i~~QL--~H~~Gr~ 110 (382)
T cd02931 82 IRTAKEMTERVHAYGTKIFLQL--TAGFGRV 110 (382)
T ss_pred hHHHHHHHHHHHHcCCEEEEEc--cCcCCCc
Confidence 6789999999999999999776 575 543
No 308
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=32.33 E-value=93 Score=30.35 Aligned_cols=50 Identities=18% Similarity=0.249 Sum_probs=33.0
Q ss_pred cEEEEEEccCC---ceEEEEeecc-CCCcc-----e---------EEEEEccCccccceE--EEEEecCCC
Q psy9003 74 SVRCFEWAPSA---QQLYLTGNVS-LTPWS-----I---------MEEASLSSIKLIQSI--QYILTGVFG 124 (1276)
Q Consensus 74 g~~f~~wAP~A---~~v~l~gdfn-~~~w~-----m---------~~~~~~~~~~~g~~y--ky~i~~~~g 124 (1276)
-|+|++-.|.- +.|+|+|+-. ..+|+ | .|++.+ .+..|..+ ||.+.+.+|
T Consensus 4 ~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~-~lp~~~~veyKyv~~~~~~ 73 (99)
T cd05809 4 PQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTV-HLPAGRNIEFKAIKKSKDG 73 (99)
T ss_pred EEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEE-EecCCCcEEEEEEEEcCCC
Confidence 47888866654 7999999554 47775 2 687766 45666655 556655554
No 309
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=32.10 E-value=5.8e+02 Score=29.43 Aligned_cols=42 Identities=12% Similarity=0.041 Sum_probs=21.2
Q ss_pred HHHHHHHhhhhhcCCCCCcchhhhhhhhhhccccCCCHHHHHHHHHh
Q psy9003 526 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDE 572 (1276)
Q Consensus 526 e~~~~lv~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~e~~~~l~~~ 572 (1276)
+..++|..++...++.-+++++.+.+.. ..||+..+...++.
T Consensus 188 ~~~~~l~~~~~~~~~~~~~~al~~l~~~-----~~gdlr~l~~~l~~ 229 (337)
T PRK12402 188 ELVDVLESIAEAEGVDYDDDGLELIAYY-----AGGDLRKAILTLQT 229 (337)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH-----cCCCHHHHHHHHHH
Confidence 4455555555555555455555555532 15555555444443
No 310
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=31.40 E-value=1.1e+02 Score=29.94 Aligned_cols=47 Identities=17% Similarity=0.439 Sum_probs=30.9
Q ss_pred EEEEEEccCC--ceEEEEeecc-CCCcc------e------EEEEEc--cCccccceEEEEEecC
Q psy9003 75 VRCFEWAPSA--QQLYLTGNVS-LTPWS------I------MEEASL--SSIKLIQSIQYILTGV 122 (1276)
Q Consensus 75 ~~f~~wAP~A--~~v~l~gdfn-~~~w~------m------~~~~~~--~~~~~g~~yky~i~~~ 122 (1276)
++|++-+|-. +.|+|+|+-. ..+|+ | .|++.+ |. ...=-|||.|...
T Consensus 2 v~F~i~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~~~~~W~~~v~lp~-~~~veYKY~i~~~ 65 (100)
T cd05817 2 VTFKIHYPTQFGEAVYISGNCNQLGNWNPSKAKRMQWNEGDLWTVDVGIPE-SVYIEYKYFVSNY 65 (100)
T ss_pred EEEEEEEEcCCCCEEEEEeCcHHHCCCCccccCcccCCCCCCEEEEEEECC-CCcEEEEEEEEec
Confidence 4566654422 7999999976 67888 4 897665 43 3345677777643
No 311
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=31.25 E-value=75 Score=36.90 Aligned_cols=54 Identities=19% Similarity=0.232 Sum_probs=39.9
Q ss_pred CCcHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCC-chHHHHHHHHHHHHHhh
Q psy9003 1099 YSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVD-TDALIYLMVANKFLHDK 1173 (1276)
Q Consensus 1099 ~~np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d-~~a~~Fl~el~~~Vr~~ 1173 (1276)
.++|..|+.+++++..++++|++||+-+|--. +. ..+ ..-..|++++++.+++.
T Consensus 83 l~~~~~R~~fi~~iv~~~~~~~~dGidiD~E~-~~--------------------~~d~~~~~~fl~eL~~~l~~~ 137 (298)
T cd06549 83 LADPSARAKFIANIAAYLERNQADGIVLDFEE-LP--------------------ADDLPKYVAFLSELRRRLPAQ 137 (298)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCCCEEEecCC-CC--------------------hhHHHHHHHHHHHHHHHhhhc
Confidence 45788899999999999999999999999632 10 001 12356899999888765
No 312
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=30.88 E-value=91 Score=36.85 Aligned_cols=95 Identities=18% Similarity=0.208 Sum_probs=46.4
Q ss_pred HHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHHhCC
Q psy9003 1041 YLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQ 1120 (1276)
Q Consensus 1041 ~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~Wv~eyg 1120 (1276)
..|++||++|.+|+==+.+.+-... .+. ......++++.+ .+.+.|++. ++.||
T Consensus 46 ~widaAHrnGV~vLGTiife~~~~~-~~~--------~~ll~~~~~g~~-------------~~A~kLi~i----a~~yG 99 (311)
T PF03644_consen 46 GWIDAAHRNGVKVLGTIIFEWGGGA-EWC--------EELLEKDEDGSF-------------PYADKLIEI----AKYYG 99 (311)
T ss_dssp HHHHHHHHTT--EEEEEEEEEE--H-HHH--------HHHT---TTS---------------HHHHHHHHH----HHHHT
T ss_pred hhHHHHHhcCceEEEEEEecCCchH-HHH--------HHHHcCCccccc-------------HHHHHHHHH----HHHcC
Confidence 5889999999999877666221110 000 001111222211 234455555 45589
Q ss_pred CcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCCCeEEE
Q psy9003 1121 FDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITI 1180 (1276)
Q Consensus 1121 VDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~PdvilI 1180 (1276)
+||+=+---..+. . ...-..-..|++.+++..++ .|+..++
T Consensus 100 FDGw~iN~E~~~~-------~-----------~~~~~~l~~F~~~l~~~~~~-~~~~~v~ 140 (311)
T PF03644_consen 100 FDGWLINIETPLS-------G-----------PEDAENLIDFLKYLRKEAHE-NPGSEVI 140 (311)
T ss_dssp --EEEEEEEESST-------T-----------GGGHHHHHHHHHHHHHHHHH-T-T-EEE
T ss_pred CCceEEEecccCC-------c-----------hhHHHHHHHHHHHHHHHhhc-CCCcEEE
Confidence 9998765432221 0 00112346799999999999 8887554
No 313
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=30.67 E-value=72 Score=37.22 Aligned_cols=29 Identities=17% Similarity=0.176 Sum_probs=26.0
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCcEEccCC
Q psy9003 1100 SEIEVLRFLLSNLRWYLDEYQFDGFRFDG 1128 (1276)
Q Consensus 1100 ~np~Vr~~Iidsl~~Wv~eygVDGFRfD~ 1128 (1276)
++|..|+-+++++..++++||+||+-+|.
T Consensus 88 ~~~~~R~~fi~s~~~~~~~~~~DGidiD~ 116 (318)
T cd02876 88 NDEQEREKLIKLLVTTAKKNHFDGIVLEV 116 (318)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCcEEEec
Confidence 46788999999999999999999998883
No 314
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=30.49 E-value=79 Score=31.29 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHhcCc-----------CCCHHHHHHHHHHHHHc
Q psy9003 144 TPEQLKYLVDECHKAGL-----------FGTPEQLKYLVDECHKA 177 (1276)
Q Consensus 144 y~e~a~~li~y~~~~~y-----------ygtp~~l~~~vd~~h~~ 177 (1276)
..+..++.|.++++-|. .|..+++|..|.+||+.
T Consensus 17 ~s~yVa~~i~~l~~sGl~y~~~pm~T~IEGe~dev~~~i~~~~e~ 61 (97)
T TIGR00106 17 VSSYVAAAIEVLKESGLKYELHPMGTLIEGDLDELFEAIKAIHEA 61 (97)
T ss_pred HHHHHHHHHHHHHHcCCCeEecCCccEEecCHHHHHHHHHHHHHH
Confidence 34456678888888887 78889999999999876
No 315
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=30.42 E-value=4.4e+02 Score=31.25 Aligned_cols=130 Identities=14% Similarity=0.186 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCC-CC-----CCCCcCCCCCcHH---HH
Q psy9003 1035 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGT-HP-----LWDSRLFNYSEIE---VL 1105 (1276)
Q Consensus 1035 t~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~-~~-----~W~g~~LN~~np~---Vr 1105 (1276)
.+..||+|++++|+.|-++++-+ +|.+...... +.+. .+ .|... .+ .+.. .-..+..+ +.
T Consensus 80 ~i~~~~~l~~~vh~~G~~~~~Ql--~h~G~~~~~~---~~~~--~~---~ps~~~~~~~~~~~~~~-p~~mt~~eI~~~i 148 (338)
T cd04733 80 DLEAFREWAAAAKANGALIWAQL--NHPGRQSPAG---LNQN--PV---APSVALDPGGLGKLFGK-PRAMTEEEIEDVI 148 (338)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEc--cCCCcCCCcc---CCCC--Cc---CCCCCcCcccccccCCC-CCcCCHHHHHHHH
Confidence 47899999999999999998776 4766543211 1000 00 00000 00 0000 01122222 22
Q ss_pred HHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCC-CeEE
Q psy9003 1106 RFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYP-EIIT 1179 (1276)
Q Consensus 1106 ~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~P-dvil 1179 (1276)
+.+.++.+. +.+.|+||.-+-++..-+-..+ +.+-+. .....+|+. -.+...|..++.+.||+.-+ ++.+
T Consensus 149 ~~~~~aA~r-a~~aGfDgVeih~a~gyLl~qF-lsp~~N-~R~D~yGGs-lenR~rf~~EiI~aIR~avG~d~~v 219 (338)
T cd04733 149 DRFAHAARL-AQEAGFDGVQIHAAHGYLLSQF-LSPLTN-KRTDEYGGS-LENRARLLLEIYDAIRAAVGPGFPV 219 (338)
T ss_pred HHHHHHHHH-HHHcCCCEEEEchhhhhHHHHh-cCCcCC-CCCccCCCC-HHHHHHHHHHHHHHHHHHcCCCCeE
Confidence 333444544 5678999999987752110000 001111 111123332 23456788888888887764 4333
No 316
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=30.08 E-value=5.4e+02 Score=31.18 Aligned_cols=133 Identities=17% Similarity=0.134 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHH---HHHHHHHH
Q psy9003 1035 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIE---VLRFLLSN 1111 (1276)
Q Consensus 1035 t~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~---Vr~~Iids 1111 (1276)
-+..||++++++|++|=++++-+ +|.+.........+.+.. .....+ .....+..+ -..+..+ +.+.+.++
T Consensus 76 ~i~~~~~l~d~vh~~Ga~i~~QL--~H~Gr~~~~~~~~~~~~~--~~~ps~-~~~~~~~~p-~~mt~~eI~~ii~~f~~A 149 (361)
T cd04747 76 ALAGWKKVVDEVHAAGGKIAPQL--WHVGAMRKLGTPPFPDVP--PLSPSG-LVGPGKPVG-REMTEADIDDVIAAFARA 149 (361)
T ss_pred HHHHHHHHHHHHHhcCCEEEEec--cCCCCCcCcccCccCCCc--eeCCCC-CCcCCCCCC-ccCCHHHHHHHHHHHHHH
Confidence 37899999999999999988887 666654211000011100 000000 000001000 0112222 22233344
Q ss_pred HHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhC-CCe
Q psy9003 1112 LRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKY-PEI 1177 (1276)
Q Consensus 1112 l~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~-Pdv 1177 (1276)
.+.- .+.|+||.-+-++...+-..+ +.+.+. .....+|+. -.....|+.++.+.||+.- |+.
T Consensus 150 A~~a-~~aGfDgVeih~ahGyLl~qF-LSp~~N-~RtDeYGGs-lenR~Rf~~eii~air~~vG~d~ 212 (361)
T cd04747 150 AADA-RRLGFDGIELHGAHGYLIDQF-FWAGTN-RRADGYGGS-LAARSRFAAEVVKAIRAAVGPDF 212 (361)
T ss_pred HHHH-HHcCCCEEEEecccchHHHHh-cCCCCC-CCCCCCCCC-HHHHHHHHHHHHHHHHHHcCCCC
Confidence 4443 357999999998763211110 011111 111122321 1234679999999999875 554
No 317
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=28.24 E-value=57 Score=33.86 Aligned_cols=16 Identities=31% Similarity=0.628 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHcCCC
Q psy9003 165 EQLKYLVDECHKAGLF 180 (1276)
Q Consensus 165 ~~l~~~vd~~h~~~i~ 180 (1276)
+=|..+|++||+.||+
T Consensus 44 Dllge~v~a~h~~Gir 59 (132)
T PF14871_consen 44 DLLGEQVEACHERGIR 59 (132)
T ss_pred CHHHHHHHHHHHCCCE
Confidence 4458899999999998
No 318
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=27.88 E-value=9.4e+02 Score=30.46 Aligned_cols=90 Identities=21% Similarity=0.171 Sum_probs=50.4
Q ss_pred hhhhcccccCCCHHHHHHHHhhhhhccCCCChhhh-hhhHHHhhhccCCCCHHHHHHHHHHHHhhcCCCChHHHhhhhhh
Q psy9003 589 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQL-KYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDE 667 (1276)
Q Consensus 589 ~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (1276)
.....+.++.=+-|++.-+...... .. +++ +.+.+|...+ ||.+-++.+.+..+.- -.+...+..++..
T Consensus 313 f~~lv~~lR~~~~e~l~~l~~~~~~-~~----~~~r~~~~Dal~~~---GT~~a~~~i~~~i~~~--~~~~~ea~~~~~~ 382 (574)
T smart00638 313 FLRLVRLLRTLSEEQLEQLWRQLYE-KK----KKARRIFLDAVAQA---GTPPALKFIKQWIKNK--KITPLEAAQLLAV 382 (574)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh-CC----HHHHHHHHHHHHhc---CCHHHHHHHHHHHHcC--CCCHHHHHHHHHH
Confidence 4445555666666777666665543 11 233 2445665554 5566666666655441 1344445555666
Q ss_pred hhhcccCCChhHHHHHHHHHH
Q psy9003 668 CHKAGLFGTPEQLKYLVDECH 688 (1276)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~ 688 (1276)
+....++-|.|.++.+.+-+.
T Consensus 383 ~~~~~~~Pt~~~l~~l~~l~~ 403 (574)
T smart00638 383 LPHTARYPTEEILKALFELAE 403 (574)
T ss_pred HHHhhhcCCHHHHHHHHHHhc
Confidence 666666777777777766444
No 319
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=27.78 E-value=2.4e+02 Score=32.84 Aligned_cols=133 Identities=13% Similarity=0.194 Sum_probs=64.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCC-cCCCCCcH---HHHHHHHH
Q psy9003 1035 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDS-RLFNYSEI---EVLRFLLS 1110 (1276)
Q Consensus 1035 t~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g-~~LN~~np---~Vr~~Iid 1110 (1276)
.++.+|++++++|+.|-++++-+ +|.+...... +.+..+ +. |......+.. ..-..+.. ++.+.+.+
T Consensus 75 ~~~~~~~~~~~vh~~g~~~~~Ql--~h~G~~~~~~---~~~~~~--~~--~s~~~~~~~~~~~~~mt~~ei~~~i~~~~~ 145 (327)
T cd02803 75 QIPGLRKLTEAVHAHGAKIFAQL--AHAGRQAQPN---LTGGPP--PA--PSAIPSPGGGEPPREMTKEEIEQIIEDFAA 145 (327)
T ss_pred HHHHHHHHHHHHHhCCCHhhHHh--hCCCcCCCCc---CCCCCc--cC--CCCCCCCCCCCCCCcCCHHHHHHHHHHHHH
Confidence 47899999999999999887655 6776553211 111000 00 0000000100 00112222 33444455
Q ss_pred HHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhC-CCeEEE
Q psy9003 1111 NLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKY-PEIITI 1180 (1276)
Q Consensus 1111 sl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~-PdvilI 1180 (1276)
+.+...+ .|+||+-+.++...+-..+ ..+.+. .....+|+.. .....|+.++.+.+|+.. +++.+.
T Consensus 146 aA~~a~~-aGfDgveih~~~gyL~~qF-lsp~~n-~R~d~yGgs~-enr~r~~~eii~avr~~~g~d~~i~ 212 (327)
T cd02803 146 AARRAKE-AGFDGVEIHGAHGYLLSQF-LSPYTN-KRTDEYGGSL-ENRARFLLEIVAAVREAVGPDFPVG 212 (327)
T ss_pred HHHHHHH-cCCCEEEEcchhhhHHHHh-cCcccc-CCCcccCCCH-HHHHHHHHHHHHHHHHHcCCCceEE
Confidence 6666555 7999999998732110000 000011 1111223221 245678888888888765 454333
No 320
>KOG3625|consensus
Probab=27.72 E-value=1.3e+02 Score=40.21 Aligned_cols=66 Identities=18% Similarity=0.183 Sum_probs=45.0
Q ss_pred cCCCCC-----cHHHHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHH
Q psy9003 1095 RLFNYS-----EIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKF 1169 (1276)
Q Consensus 1095 ~~LN~~-----np~Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~ 1169 (1276)
..|+|. .|-++++|..-...=++ =+||+|+|-...- ++..-..+-++
T Consensus 499 VKLryG~kpeDsPyLWq~M~kY~e~tAr--iFdG~RlDNcHsT--------------------------PlHVaEylLd~ 550 (1521)
T KOG3625|consen 499 VKLRYGNKPEDSPYLWQHMKKYTEITAR--IFDGVRLDNCHST--------------------------PLHVAEYLLDA 550 (1521)
T ss_pred eeeccCCCcccChHHHHHHHHHHHHHHH--HhcceeeccCCCC--------------------------chhHHHHHHHH
Confidence 456664 47788888777766566 4899999975533 12223334566
Q ss_pred HHhhCCCeEEEEEccCCCC
Q psy9003 1170 LHDKYPEIITIAEDVSGMP 1188 (1276)
Q Consensus 1170 Vr~~~PdvilIAE~~s~~p 1188 (1276)
.|+.+|+.+.+||-.++..
T Consensus 551 ARk~nPnlYVvAELFtgSe 569 (1521)
T KOG3625|consen 551 ARKLNPNLYVVAELFTGSE 569 (1521)
T ss_pred HHhcCCCeEEEeeeccCCc
Confidence 7889999999999765543
No 321
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=27.59 E-value=1.2e+02 Score=30.46 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=24.3
Q ss_pred HHHHHHHHHcCCCCCchhhhHHHHhhhc
Q psy9003 168 KYLVDECHKAGLFGTPEQLKYLVDECHK 195 (1276)
Q Consensus 168 ~~~vd~~h~~~i~~~~~~~~~~~~~~~~ 195 (1276)
.++.+.+++.||+-|+++++.++|++-+
T Consensus 75 ~~v~~~L~~~gi~~t~~~i~~~IEaAV~ 102 (108)
T PF09682_consen 75 QYVKERLKKKGIKVTDEQIEGAIEAAVK 102 (108)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 3788999999999999999999997754
No 322
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=27.43 E-value=1e+03 Score=28.89 Aligned_cols=128 Identities=12% Similarity=0.071 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCC-CCC---CCCCcCCCCCcHH---HHHH
Q psy9003 1035 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRG-THP---LWDSRLFNYSEIE---VLRF 1107 (1276)
Q Consensus 1035 t~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g-~~~---~W~g~~LN~~np~---Vr~~ 1107 (1276)
.++.||+|++++|++|-++++-+. |.+...... ..+.. . + .|.. ... .+...--..+..+ +.+-
T Consensus 81 ~i~~~~~l~~~vh~~G~~i~~QL~--H~G~~~~~~---~~~~~-~-~--~ps~~~~~~~~~~~~~p~~mt~~eI~~ii~~ 151 (370)
T cd02929 81 DIRNLAAMTDAVHKHGALAGIELW--HGGAHAPNR---ESRET-P-L--GPSQLPSEFPTGGPVQAREMDKDDIKRVRRW 151 (370)
T ss_pred HHHHHHHHHHHHHHCCCeEEEecc--cCCCCCCcc---CCCCC-c-c--CCCCCCCCccccCCCCCccCCHHHHHHHHHH
Confidence 478999999999999999998875 777643210 00000 0 0 0000 000 0100001122223 3333
Q ss_pred HHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCC
Q psy9003 1108 LLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYP 1175 (1276)
Q Consensus 1108 Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~P 1175 (1276)
+.++.+. +.+.|+||.-+-++...+-..+ +.+.+. .....+|+. -.....|+.++.+.||+.-+
T Consensus 152 f~~AA~r-a~~aGfDgVEih~ahGyLl~QF-lSp~~N-~RtD~yGGs-lenR~Rf~~eii~aIr~~vg 215 (370)
T cd02929 152 YVDAALR-ARDAGFDIVYVYAAHGYLPLQF-LLPRYN-KRTDEYGGS-LENRARFWRETLEDTKDAVG 215 (370)
T ss_pred HHHHHHH-HHHcCCCEEEEcccccchHHHh-hCcccc-CCccccCCC-hHhhhHHHHHHHHHHHHHcC
Confidence 3444443 4568999999998752110100 001011 111122321 12346788999888988764
No 323
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=27.36 E-value=1.1e+02 Score=33.01 Aligned_cols=27 Identities=19% Similarity=0.368 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEEecc
Q psy9003 1034 GTPEQLKYLVDECHKAGLYVLLDVVHS 1060 (1276)
Q Consensus 1034 Gt~eEfK~LV~alHk~GI~VILDvV~N 1060 (1276)
+..+-+..+.++|.+.||+|++-+-++
T Consensus 62 ~~~d~l~~~L~~A~~~Gmkv~~Gl~~~ 88 (166)
T PF14488_consen 62 PPVDLLEMILDAADKYGMKVFVGLYFD 88 (166)
T ss_pred CcccHHHHHHHHHHHcCCEEEEeCCCC
Confidence 456778899999999999999998777
No 324
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=27.29 E-value=1e+02 Score=31.06 Aligned_cols=44 Identities=16% Similarity=0.303 Sum_probs=30.8
Q ss_pred EEEEEEcc---CCceEEEEee---ccCCCcc------e--------EEEEEccCcccc--ceEEEEEec
Q psy9003 75 VRCFEWAP---SAQQLYLTGN---VSLTPWS------I--------MEEASLSSIKLI--QSIQYILTG 121 (1276)
Q Consensus 75 ~~f~~wAP---~A~~v~l~gd---fn~~~w~------m--------~~~~~~~~~~~g--~~yky~i~~ 121 (1276)
|+|++-+| --+.|+|+|+ + .+|+ | .|++.+ .+..+ =-|||.|..
T Consensus 3 v~F~v~~~~~~~ge~v~v~G~~~~L--G~W~~~~a~~l~~~~~~~~~W~~~v-~lp~~~~veYkY~~~~ 68 (120)
T cd05814 3 VTFRVFASELAPGEVVAVVGSLPVL--GNWQPEKAVPLEKEDDDCNLWKASI-ELPRGVDFQYRYFVAV 68 (120)
T ss_pred EEEEEeeccCCCCCEEEEEeChHHh--CCCCHHhCeeCccCCCcCCccEEEE-EECCCCeEEEEEEEEE
Confidence 78999886 4568999999 7 7776 4 587666 34444 456776654
No 325
>KOG1616|consensus
Probab=26.40 E-value=1.1e+02 Score=36.01 Aligned_cols=65 Identities=20% Similarity=0.287 Sum_probs=42.5
Q ss_pred EEEEEccCCcEEEEEccCCCCccccccceecCCC--eEEEEcCCCCCCCcccCcccEEEEEEEEeCCeeeeecCCcceEe
Q psy9003 783 HKAGLLCFMHVVCAAGDFNNWNREEFAYKKLDFG--KWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWATYV 860 (1276)
Q Consensus 783 ~FalwAP~A~~VsLvGDFN~wd~~~~pM~r~~~G--VWsl~Ip~~~~G~~~i~hGs~YkYrV~~~dG~~~~~~DPYAkav 860 (1276)
+---|++..+.|+|.|.|.+|. ...++.+...+ -+...+. ...|. ..|+|.+ ||+| ..||.-..+
T Consensus 82 vvi~W~~gg~~v~v~gS~~nWk-~~~~l~~~~~~~~~f~~~~d-L~~g~------~~~kf~v---dge~--~~s~~~pta 148 (289)
T KOG1616|consen 82 TVIRWSQGGKEVYVDGSFGNWK-TKIPLVRSGKNVGGFSTILD-LPPGE------HEYKFIV---DGEW--RHDPDLPTA 148 (289)
T ss_pred eEEEecCCCceEEEeccccccc-ccccceecCCCcccceeeEe-cCCce------EEEEEec---CCce--ecCCCCccc
Confidence 3346999999999999999994 45666664333 3776553 44553 4566655 7887 456655443
No 326
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=26.36 E-value=4.3e+02 Score=35.52 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=16.1
Q ss_pred hhhhhhhhhhhccCCCHHHHHHHhhhh
Q psy9003 490 LKYLVDECHKAGLFGTPEQLKYLVDEC 516 (1276)
Q Consensus 490 ~~~lv~~~~~~~~~~~~~~~~~~~t~~ 516 (1276)
.++|..++.+.++....+.+++++..+
T Consensus 185 ~~~L~~il~~EGv~id~eal~lLa~~s 211 (824)
T PRK07764 185 RGYLERICAQEGVPVEPGVLPLVIRAG 211 (824)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 345666666666556666666665555
No 327
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=26.17 E-value=1.7e+02 Score=27.67 Aligned_cols=49 Identities=18% Similarity=0.340 Sum_probs=33.1
Q ss_pred EEEEEEc--cCCceEEEEeecc-CCCcc------e-------EEEEEccCccc--c--ceEEEEEecCCC
Q psy9003 75 VRCFEWA--PSAQQLYLTGNVS-LTPWS------I-------MEEASLSSIKL--I--QSIQYILTGVFG 124 (1276)
Q Consensus 75 ~~f~~wA--P~A~~v~l~gdfn-~~~w~------m-------~~~~~~~~~~~--g--~~yky~i~~~~g 124 (1276)
++|++-+ +--+.++|+|+.. ..+|+ | .|++.++ +.. + --|||.|...++
T Consensus 2 v~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~W~~~v~-~~~~~~~~~~yKy~~~~~~~ 70 (96)
T cd05467 2 VRFQVRCTTQFGQSVYVVGSHPELGNWDPAKALRLNTSNSYPLWTGEIP-LPAPEGQVIEYKYVIVDDDG 70 (96)
T ss_pred EEEEEEEECCCCCEEEEEeCcHHhCCcChhcCccccCCCCCCcEEEEEE-ecCCCCCeEEEEEEEECCCC
Confidence 4565553 4456899999997 67777 4 6887664 233 5 467887776664
No 328
>KOG2499|consensus
Probab=25.48 E-value=3e+02 Score=34.71 Aligned_cols=30 Identities=23% Similarity=0.312 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEe-ccccCC
Q psy9003 1035 TPEQLKYLVDECHKAGLYVLLDVV-HSHASK 1064 (1276)
Q Consensus 1035 t~eEfK~LV~alHk~GI~VILDvV-~NHt~~ 1064 (1276)
|.+|.+++|+-+.-|||||+-.+- +.||+.
T Consensus 248 T~eDv~evV~yarlRGIRVlpEfD~PgHt~s 278 (542)
T KOG2499|consen 248 TREDVSEVVEYARLRGIRVLPEFDTPGHTGS 278 (542)
T ss_pred cHHHHHHHHHHHHhccceeeecccCCccccc
Confidence 679999999999999999999884 788876
No 329
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=25.48 E-value=79 Score=37.36 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEec
Q psy9003 1036 PEQLKYLVDECHKAGLYVLLDVVH 1059 (1276)
Q Consensus 1036 ~eEfK~LV~alHk~GI~VILDvV~ 1059 (1276)
..++..+++.|+++||.|||-.=+
T Consensus 62 ~~dl~~f~~~a~~~gl~vilrpGp 85 (319)
T PF01301_consen 62 NRDLDRFLDLAQENGLYVILRPGP 85 (319)
T ss_dssp GG-HHHHHHHHHHTT-EEEEEEES
T ss_pred hhhHHHHHHHHHHcCcEEEecccc
Confidence 478999999999999999998644
No 330
>PF01910 DUF77: Domain of unknown function DUF77; InterPro: IPR002767 This entry contains several hypothetical proteins of unknown function found in archaebacteria, eukaryotes and eubacteria. The structures of YBL001c from Saccharomyces cerevisiae and its homologue MTH1187 from the archaea Methanobacterium thermoautotrophicum have been determined []. These proteins have a ferredoxin-like alpha/beta sandwich structure with anti-parallel beta-sheets. Generally, they have two domains that form a single beta-sheet dimer, where two dimers pack sheet-to-sheet into a tetramer, some proteins having an extra C-terminal helix. ; PDB: 1LXJ_A 1YQH_A 2EKY_G 2EPI_A 1VK8_D 2IBO_C 1LXN_B.
Probab=25.42 E-value=66 Score=31.45 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHhcCc-----------CCCHHHHHHHHHHHHHcC
Q psy9003 144 TPEQLKYLVDECHKAGL-----------FGTPEQLKYLVDECHKAG 178 (1276)
Q Consensus 144 y~e~a~~li~y~~~~~y-----------ygtp~~l~~~vd~~h~~~ 178 (1276)
+.+..+..|.++++.|. -|..+++|.+|.+||+.-
T Consensus 15 ~~~~V~~~i~~i~~sgl~y~v~pm~T~iEGe~dev~~~i~~~~e~~ 60 (92)
T PF01910_consen 15 VSAYVAEAIEVIKESGLKYEVGPMGTTIEGELDEVMALIKEAHEAL 60 (92)
T ss_dssp HHHHHHHHHHHHHTSSSEEEEETTEEEEEEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCceEEcCCccEEEecHHHHHHHHHHHHHHH
Confidence 44567888999999998 788999999999999863
No 331
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=24.94 E-value=1.6e+02 Score=36.48 Aligned_cols=84 Identities=10% Similarity=0.131 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEe-ccccCCcccC---CCcCC--CCCC---CcccccCCCC-----CCCCCCCcCCCCC
Q psy9003 1035 TPEQLKYLVDECHKAGLYVLLDVV-HSHASKNVLD---GLNEF--DGTQ---ACFFHDGPRG-----THPLWDSRLFNYS 1100 (1276)
Q Consensus 1035 t~eEfK~LV~alHk~GI~VILDvV-~NHt~~~~~~---~~~~f--~g~~---~~Yy~~~~~g-----~~~~W~g~~LN~~ 1100 (1276)
|.+|++++|+-|+++||+||-.+- +.|+...-.. ....+ .|.. ..|...++.. ....|..+.||..
T Consensus 95 T~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~a~~~~yp~l~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~~L~p~ 174 (445)
T cd06569 95 SRADYIEILKYAKARHIEVIPEIDMPGHARAAIKAMEARYRKLMAAGKPAEAEEYRLSDPADTSQYLSVQFYTDNVINPC 174 (445)
T ss_pred CHHHHHHHHHHHHHcCCEEEEccCCchhHHHHHHhhhccchhhhccCCccccccccccCcccccccccccccccccccCC
Confidence 789999999999999999998884 7787642100 00000 0110 0111111110 1122345679999
Q ss_pred cHHHHHHHHHHHHHHHHh
Q psy9003 1101 EIEVLRFLLSNLRWYLDE 1118 (1276)
Q Consensus 1101 np~Vr~~Iidsl~~Wv~e 1118 (1276)
+|.+.+++.+++.-.++-
T Consensus 175 ~~~ty~fl~~vl~Ev~~l 192 (445)
T cd06569 175 MPSTYRFVDKVIDEIARM 192 (445)
T ss_pred chhHHHHHHHHHHHHHHH
Confidence 999999999999998874
No 332
>PF02777 Sod_Fe_C: Iron/manganese superoxide dismutases, C-terminal domain Note: SCOP classifies the two domains separately.; InterPro: IPR019832 Superoxide dismutases (SODs) (1.15.1.1 from EC) catalyse the conversion of superoxide radicals to molecular oxygen. Their function is to destroy the radicals that are normally produced within cells and are toxic to biological systems. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one [, , ]. This family includes both single metal-binding SODs and cambialistic SOD, which can bind either Mn or Fe. Fe/MnSODs are ubiquitous enzymes that are responsible for the majority of SOD activity in prokaryotes, fungi, blue-green algae and mitochondria. Fe/MnSODs are found as homodimers or homotetramers. The structure of Fe/MnSODs can be divided into two domains, an alpha N-terminal domain and an alpha/beta C-terminal domain, connected by a loop. The structure of the N-terminal domain consists of a two helices in an antiparallel hairpin, with a left-handed twist []. The structure of the C-terminal domain is of the alpha/beta type, and consists of a three-stranded antiparallel beta-sheet in the order 213, along with four helices in the arrangement alpha/beta(2)/alpha/beta/alpha(2) []. This entry represents the C-terminal domain of Manganese/iron superoxide dismutase. ; GO: 0004784 superoxide dismutase activity, 0046872 metal ion binding, 0006801 superoxide metabolic process, 0055114 oxidation-reduction process; PDB: 1KKC_Y 2GOJ_B 1UES_C 1UER_C 1QNN_A 1MY6_A 1MA1_F 1P7G_Q 3EVK_D 2GPC_A ....
Probab=24.75 E-value=92 Score=30.81 Aligned_cols=50 Identities=14% Similarity=0.280 Sum_probs=41.8
Q ss_pred HHHHHHhhccCchHHhhHHHhhccceEecCC-cEEEEEEccCCceEEEEeecc
Q psy9003 43 NFLEQFEKHEGGIEKFTTSYNKYGIHVQADN-SVRCFEWAPSAQQLYLTGNVS 94 (1276)
Q Consensus 43 ~~~~~i~~~~ggl~~Fs~~y~~fGah~~~~g-g~~f~~wAP~A~~v~l~gdfn 94 (1276)
+..+.|++..|++|+|..-...-+..+ .| |+.+.+|-|...++.++-..|
T Consensus 6 ~l~~~I~~~FGS~d~fk~~f~~~a~~~--~GsGW~wLv~d~~~~~L~i~~t~n 56 (106)
T PF02777_consen 6 KLKKAIEEDFGSFDNFKAEFTAAALSV--FGSGWVWLVYDPSDGKLSIISTPN 56 (106)
T ss_dssp HHHHHHHHHHSSHHHHHHHHHHHHHHS--SSSEEEEEEEETTTTEEEEEEEET
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcC--CCCCeeeeeeccccceeeeeeecc
Confidence 567899999999999998877666543 24 899999999999999998775
No 333
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=24.69 E-value=1.1e+03 Score=27.80 Aligned_cols=137 Identities=16% Similarity=0.235 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCC-------cccccCCCC-CC-CCCCCcCCCCCcHH--
Q psy9003 1035 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQA-------CFFHDGPRG-TH-PLWDSRLFNYSEIE-- 1103 (1276)
Q Consensus 1035 t~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~-------~Yy~~~~~g-~~-~~W~g~~LN~~np~-- 1103 (1276)
.+..||+|++++|+.|-++++-+. |.+....... .+.+... ..-...|.. .. ..+.. .-..+..+
T Consensus 75 ~~~~~~~l~~~vh~~G~~~~~QL~--H~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~ps~~~~~~~~~~-p~~mt~~eI~ 150 (336)
T cd02932 75 QIEALKRIVDFIHSQGAKIGIQLA--HAGRKASTAP-PWEGGGPLLPPGGGGWQVVAPSAIPFDEGWPT-PRELTREEIA 150 (336)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEcc--CCCcCCCCCC-CccccccccccccCCCceeCCCCCcCCCCCCC-CCcCCHHHHH
Confidence 478999999999999999988764 6655421110 0000000 000000000 00 00100 01122333
Q ss_pred -HHHHHHHHHHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhCC-CeEE
Q psy9003 1104 -VLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYP-EIIT 1179 (1276)
Q Consensus 1104 -Vr~~Iidsl~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~P-dvil 1179 (1276)
+.+.+.+.++...+ .|+||+-+-++..-+-..+ ..+... .....+|+ .-.....|..++.+.||+..+ ++.+
T Consensus 151 ~ii~~~~~aA~~a~~-aGfDgVei~~~~gyLl~qF-lsp~~N-~R~D~yGg-sl~nr~rf~~eiv~aIR~~vG~d~~v 224 (336)
T cd02932 151 EVVDAFVAAARRAVE-AGFDVIEIHAAHGYLLHQF-LSPLSN-KRTDEYGG-SLENRMRFLLEVVDAVRAVWPEDKPL 224 (336)
T ss_pred HHHHHHHHHHHHHHH-cCCCEEEEccccccHHHHh-cCCccC-CCCcccCC-CHHHHhHHHHHHHHHHHHHcCCCceE
Confidence 34445566777766 6999999987642100000 000000 01111222 123456788888888887764 5433
No 334
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=24.46 E-value=8.2e+02 Score=29.56 Aligned_cols=29 Identities=14% Similarity=0.173 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEEeccccCCc
Q psy9003 1035 TPEQLKYLVDECHKAGLYVLLDVVHSHASKN 1065 (1276)
Q Consensus 1035 t~eEfK~LV~alHk~GI~VILDvV~NHt~~~ 1065 (1276)
.+..||++++++|++|-++++-+ +|.+..
T Consensus 77 ~i~~~~~lad~vH~~Ga~i~~QL--~H~Gr~ 105 (362)
T PRK10605 77 QIAAWKKITAGVHAEGGHIAVQL--WHTGRI 105 (362)
T ss_pred HHHHHHHHHHHHHhCCCEEEEec--cCCCCC
Confidence 36889999999999999999865 577765
No 335
>COG4724 Endo-beta-N-acetylglucosaminidase D [Carbohydrate transport and metabolism]
Probab=24.17 E-value=2.2e+02 Score=34.90 Aligned_cols=61 Identities=23% Similarity=0.520 Sum_probs=40.0
Q ss_pred HHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCccc----ccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHHHH
Q psy9003 1041 YLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFF----HDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYL 1116 (1276)
Q Consensus 1041 ~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy----~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~Wv 1116 (1276)
..|+++|++|+-|+=-+.++-. .+.|. ..|+ ..+.+|++| ..+.|+++.+|
T Consensus 131 DVIDaaHrNGVPvlGt~Ffppk---------~ygg~-~ewv~~mLk~dedGsfP-------------~A~klv~vAky-- 185 (553)
T COG4724 131 DVIDAAHRNGVPVLGTLFFPPK---------NYGGD-QEWVAEMLKQDEDGSFP-------------IARKLVDVAKY-- 185 (553)
T ss_pred hhhhhhhcCCCceeeeeecChh---------hcCch-HHHHHHHHhcCcCCCCh-------------hHHHHHHHHHh--
Confidence 6799999999999888877622 12121 2333 235566654 45566777655
Q ss_pred HhCCCcEEccCC
Q psy9003 1117 DEYQFDGFRFDG 1128 (1276)
Q Consensus 1117 ~eygVDGFRfD~ 1128 (1276)
||.|||=+.-
T Consensus 186 --YGfdGwFINq 195 (553)
T COG4724 186 --YGFDGWFINQ 195 (553)
T ss_pred --cCcceeEecc
Confidence 8999997763
No 336
>TIGR03356 BGL beta-galactosidase.
Probab=23.36 E-value=2.8e+02 Score=34.14 Aligned_cols=58 Identities=16% Similarity=0.163 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCCCcHHHHHHHHHHHHHH
Q psy9003 1036 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWY 1115 (1276)
Q Consensus 1036 ~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~~np~Vr~~Iidsl~~W 1115 (1276)
.+-.+++|++|.++||++|+++. |.. .|.++... | . +.+|.+.+.+.+-.+.-
T Consensus 93 ~~~y~~~i~~l~~~gi~pivtL~--Hfd-------------~P~~l~~~--g---G-------w~~~~~~~~f~~ya~~~ 145 (427)
T TIGR03356 93 LDFYDRLVDELLEAGIEPFVTLY--HWD-------------LPQALEDR--G---G-------WLNRDTAEWFAEYAAVV 145 (427)
T ss_pred HHHHHHHHHHHHHcCCeeEEeec--cCC-------------ccHHHHhc--C---C-------CCChHHHHHHHHHHHHH
Confidence 56678999999999999999996 311 02222111 1 1 34577778888888888
Q ss_pred HHhCC
Q psy9003 1116 LDEYQ 1120 (1276)
Q Consensus 1116 v~eyg 1120 (1276)
+++||
T Consensus 146 ~~~~~ 150 (427)
T TIGR03356 146 AERLG 150 (427)
T ss_pred HHHhC
Confidence 88776
No 337
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=22.35 E-value=71 Score=31.08 Aligned_cols=48 Identities=25% Similarity=0.290 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCCchhhhHHHHhhhcccccCCHHHHHHHHhhcccccC
Q psy9003 162 GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 217 (1276)
Q Consensus 162 gtp~~l~~~vd~~h~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (1276)
|..+-+.++++.+.+.||++|.-=.-..++.. +++|+.|++.||+++.
T Consensus 15 g~~~~~~~~~~~l~~~~i~at~fv~~~~~~~~--------~~~l~~l~~~G~ei~~ 62 (123)
T PF01522_consen 15 GYRDNYDRLLPLLKKYGIPATFFVIGSWVERY--------PDQLRELAAAGHEIGN 62 (123)
T ss_dssp HCHTHHHHHHHHHHHTT--EEEEE-HHHHHHH--------HHHHHHHHHTT-EEEE
T ss_pred CchhhHHHHHHHHHhcccceeeeecccccccc--------cccchhHHHHHHHHHh
Confidence 44566677777888888887765444445444 8999999999988874
No 338
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=22.32 E-value=2e+02 Score=28.06 Aligned_cols=49 Identities=14% Similarity=0.299 Sum_probs=0.0
Q ss_pred EEEEE--EccCCceEEEEeecc-CCCcc------e----------EEEEEccCccccc--eEEEEEecCCC
Q psy9003 75 VRCFE--WAPSAQQLYLTGNVS-LTPWS------I----------MEEASLSSIKLIQ--SIQYILTGVFG 124 (1276)
Q Consensus 75 ~~f~~--wAP~A~~v~l~gdfn-~~~w~------m----------~~~~~~~~~~~g~--~yky~i~~~~g 124 (1276)
|+|++ --.--+.|+|+|+-+ ..+|+ | .|++.+ .+..+. -|||.+...+|
T Consensus 9 V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v-~lp~~~~veYKy~~~~~~~ 78 (106)
T cd05811 9 VTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTI-PLPAGTSFEYKFIRKESDG 78 (106)
T ss_pred EEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEE-EeCCCCcEEEEEEEEcCCC
No 339
>KOG2983|consensus
Probab=22.31 E-value=1.2e+02 Score=35.22 Aligned_cols=77 Identities=16% Similarity=0.129 Sum_probs=50.3
Q ss_pred HHHhhccCchHHhhHHHhhccceEec---CCcEEEEEEccCCceEEEEeeccCCCcc------e-EEEEEccCc-cccc-
Q psy9003 46 EQFEKHEGGIEKFTTSYNKYGIHVQA---DNSVRCFEWAPSAQQLYLTGNVSLTPWS------I-MEEASLSSI-KLIQ- 113 (1276)
Q Consensus 46 ~~i~~~~ggl~~Fs~~y~~fGah~~~---~gg~~f~~wAP~A~~v~l~gdfn~~~w~------m-~~~~~~~~~-~~g~- 113 (1276)
+.++.-+|=++.|-+- |+.. |..+.|-||.|.-++|.|| || |+|. | -|+=...-. .+++
T Consensus 205 e~kd~~k~lI~eff~d------~i~~kF~dedfvfDVYi~k~~kv~lI-D~--Npf~~~TdsLlftWeEl~si~~~e~D~ 275 (334)
T KOG2983|consen 205 EEKDLLKGLIEEFFKD------KILFKFPDEDFVFDVYITKERKVWLI-DF--NPFCGSTDSLLFTWEELESINGPENDV 275 (334)
T ss_pred HHHHHHHHHHHHHHHh------hhhccCCCCCeeEEEEecCCCcEEEE-ec--cCccCccccceeeHHHHHhhcCCcccc
Confidence 3444445666666433 3222 5579999999999999999 99 6665 3 554333222 2564
Q ss_pred -eEEEEEecCCCCCCcccc
Q psy9003 114 -SIQYILTGVFGTPEQLKY 131 (1276)
Q Consensus 114 -~yky~i~~~~grp~~as~ 131 (1276)
.|.-|+.+...||.++|.
T Consensus 276 ed~elrlv~~~s~~sv~~~ 294 (334)
T KOG2983|consen 276 EDYELRLVPRHSRLSVLPG 294 (334)
T ss_pred cchhheecccCCccccccc
Confidence 455599988888888876
No 340
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=22.19 E-value=1.1e+02 Score=37.19 Aligned_cols=21 Identities=33% Similarity=0.602 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHcCCEEEEEE
Q psy9003 1037 EQLKYLVDECHKAGLYVLLDV 1057 (1276)
Q Consensus 1037 eEfK~LV~alHk~GI~VILDv 1057 (1276)
.=+.+.|+.+.+.||+|++|+
T Consensus 116 ~~ld~~I~~a~~~gi~V~iD~ 136 (407)
T COG2730 116 KILDEAINWAKKLGIYVLIDL 136 (407)
T ss_pred HHHHHHHHHHHhcCeeEEEEe
Confidence 356777999999999999997
No 341
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=22.17 E-value=6e+02 Score=31.27 Aligned_cols=119 Identities=10% Similarity=0.152 Sum_probs=55.8
Q ss_pred HHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCCCCCCCCCcCCCC-CcHHHHHHHHHHHHHHHH
Q psy9003 1039 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNY-SEIEVLRFLLSNLRWYLD 1117 (1276)
Q Consensus 1039 fK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g~~~~W~g~~LN~-~np~Vr~~Iidsl~~Wv~ 1117 (1276)
=+.|+++|+++|+..++ ..-| ..|.|+..+-...-.......|.- .......||.++++++ +
T Consensus 106 QrwfL~~Ak~rGV~~f~-aFSN---------------SPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~-~ 168 (384)
T PF14587_consen 106 QRWFLKAAKERGVNIFE-AFSN---------------SPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHY-K 168 (384)
T ss_dssp HHHHHHHHHHTT---EE-EE-S---------------SS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHcCCCeEE-Eeec---------------CCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHH-H
Confidence 34588999999998765 2222 123333322111000001122222 2456788999999999 6
Q ss_pred hCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCC-chHHHHHHHHHHHHHhhCCCe-EEEEEc
Q psy9003 1118 EYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVD-TDALIYLMVANKFLHDKYPEI-ITIAED 1183 (1276)
Q Consensus 1118 eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d-~~a~~Fl~el~~~Vr~~~Pdv-ilIAE~ 1183 (1276)
+. |+.||-+.-+- .|.|.+....+-|-..+ .+...+++.|.+.+++..... +.++|.
T Consensus 169 ~~---GI~f~~IsP~N------EP~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~Ea 227 (384)
T PF14587_consen 169 KW---GINFDYISPFN------EPQWNWAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACEA 227 (384)
T ss_dssp CT---T--EEEEE--S-------TTS-GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEEE
T ss_pred hc---CCccceeCCcC------CCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecch
Confidence 54 56888766552 12232111111121222 355679999999999888775 566674
No 342
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=21.97 E-value=96 Score=36.55 Aligned_cols=13 Identities=23% Similarity=0.585 Sum_probs=5.5
Q ss_pred HHHHHHHHHhcCc
Q psy9003 148 LKYLVDECHKAGL 160 (1276)
Q Consensus 148 a~~li~y~~~~~y 160 (1276)
.++++..++++|+
T Consensus 21 ~~~~l~~l~~~~~ 33 (311)
T PF02638_consen 21 IDEMLDDLKSAGF 33 (311)
T ss_pred HHHHHHHHHHcCC
Confidence 3344444444444
No 343
>KOG2505|consensus
Probab=21.93 E-value=53 Score=40.89 Aligned_cols=56 Identities=21% Similarity=0.240 Sum_probs=38.2
Q ss_pred hhHHHHHhhhcccccCCCChhhhhc-ccccchhccccCCHhHHHhhcccccccccCCC
Q psy9003 392 PEQLKYLVDECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAGLFGT 448 (1276)
Q Consensus 392 id~vkyLi~~~h~~~~~~~~~~~~~-~vt~lh~a~~~~~~~~~~yli~~~~~~~~~~~ 448 (1276)
.+-|.+|+-..--.|-..+++..-| -.|+||+|+.+|.-..|+||+.|+ |+|-.-+
T Consensus 404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg-~Dp~~kd 460 (591)
T KOG2505|consen 404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEG-CDPSTKD 460 (591)
T ss_pred hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhc-CCchhcc
Confidence 4555566644444444444444322 358999999999999999999999 9986543
No 344
>PF11958 DUF3472: Domain of unknown function (DUF3472); InterPro: IPR021862 This presumed domain is functionally uncharacterised. This domain is found in bacteria, eukaryotes and viruses. This domain is typically between 174 to 190 amino acids in length. This domain has a single completely conserved residue G that may be functionally important.
Probab=21.88 E-value=1.2e+02 Score=33.31 Aligned_cols=73 Identities=11% Similarity=0.097 Sum_probs=40.4
Q ss_pred hccceEec---CCcEEEEEEccCCce----------EEEEeeccCCCcc--e-EEEEEccCccccceEEEEEecC---CC
Q psy9003 64 KYGIHVQA---DNSVRCFEWAPSAQQ----------LYLTGNVSLTPWS--I-MEEASLSSIKLIQSIQYILTGV---FG 124 (1276)
Q Consensus 64 ~fGah~~~---~gg~~f~~wAP~A~~----------v~l~gdfn~~~w~--m-~~~~~~~~~~~g~~yky~i~~~---~g 124 (1276)
|||..+.. ...+.|.+|-|.... -..+++| .+=. + +. +-+ +.+.|..|+++|... +|
T Consensus 1 Y~GiQ~~~~~~~~~ilFSvW~~~~t~~~i~~~~~~~~~~c~~f--g~eG~G~~~~-~~~-~W~~g~~Y~f~v~~~~~~~g 76 (184)
T PF11958_consen 1 YFGIQPNSDPNGRRILFSVWDPFSTDPPIPAEYRGEDVNCSRF--GGEGSGGSCS-VPY-PWKAGHTYRFLVENTPDGDG 76 (184)
T ss_pred CcccccCCCCCCcEEEEEEcCCCCCCCCccccccCCCCccccC--CCCCCCeEEE-EEe-ccccCCEEEEEEEEeecCCC
Confidence 57888554 228999999776655 2233444 2111 1 11 111 248899999977653 34
Q ss_pred CCCccccccc-----cccccc
Q psy9003 125 TPEQLKYLVD-----ECHKAG 140 (1276)
Q Consensus 125 rp~~as~~~d-----e~h~gs 140 (1276)
.--....|.| -.|+||
T Consensus 77 ~t~~~~~v~d~~t~~~~~Igs 97 (184)
T PF11958_consen 77 GTWYTGYVTDPTTGKWTLIGS 97 (184)
T ss_pred CcEEEEEEEECCCCcEEEEEE
Confidence 3232334555 567777
No 345
>COG0605 SodA Superoxide dismutase [Inorganic ion transport and metabolism]
Probab=21.16 E-value=1.4e+02 Score=33.61 Aligned_cols=50 Identities=14% Similarity=0.292 Sum_probs=40.4
Q ss_pred HHHHHHhhccCchHHhhHHHhhccceEecCCcEEEEEEccCCceEEEEeecc
Q psy9003 43 NFLEQFEKHEGGIEKFTTSYNKYGIHVQADNSVRCFEWAPSAQQLYLTGNVS 94 (1276)
Q Consensus 43 ~~~~~i~~~~ggl~~Fs~~y~~fGah~~~~gg~~f~~wAP~A~~v~l~gdfn 94 (1276)
+..++|++..||+|+|-.-+..=++-+... ||.+.||-|.. ++.|++..|
T Consensus 99 ~L~~aI~~~FGS~d~fk~~f~~aa~~~fGs-GWawLv~~~~~-kL~i~~t~n 148 (204)
T COG0605 99 ELAAAINKDFGSFDKFKEEFTAAAASVFGS-GWAWLVYDPDG-KLEIVSTYN 148 (204)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhCCCC-ceEEEEECCCC-cEEEEeccC
Confidence 567899999999999998877655543222 79999999977 899999986
No 346
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=20.94 E-value=1.4e+02 Score=28.35 Aligned_cols=37 Identities=27% Similarity=0.368 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHhcCc-------------CCCHHHHHHHHHHHHHcCCC
Q psy9003 144 TPEQLKYLVDECHKAGL-------------FGTPEQLKYLVDECHKAGLF 180 (1276)
Q Consensus 144 y~e~a~~li~y~~~~~y-------------ygtp~~l~~~vd~~h~~~i~ 180 (1276)
|++-.+.||..-|+.|| --+|+++-.+++.+..+||.
T Consensus 5 ~~~~i~~Li~~gK~~G~lT~~eI~~~L~~~~~~~e~id~i~~~L~~~gI~ 54 (82)
T PF03979_consen 5 YEEAIKKLIEKGKKKGYLTYDEINDALPEDDLDPEQIDEIYDTLEDEGIE 54 (82)
T ss_dssp HHHHHHHHHHHHHHHSS-BHHHHHHH-S-S---HHHHHHHHHHHHTT---
T ss_pred hHHHHHHHHHHHhhcCcCCHHHHHHHcCccCCCHHHHHHHHHHHHHCCCE
Confidence 55667778888888888 46889999999999999998
No 347
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.41 E-value=9.2e+02 Score=30.35 Aligned_cols=83 Identities=10% Similarity=-0.032 Sum_probs=33.9
Q ss_pred hhhhcccCCChhHHHHHHHHHHhhccCCChhHHHhhHHHHhhcccCCCHHHHHHHHHHHHhccCCCCchhhhhhhhhhhc
Q psy9003 667 ECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHK 746 (1276)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (1276)
+++++.+=+.+..+-++++.|-..|- .-..++.-++..+.+-.-....+++--++..+.++....-.|..+..+.++.-
T Consensus 249 ~li~si~~~d~~~Al~~l~~ll~~Ge-dp~~i~r~l~~~~~edi~~a~~~~~~~~~~~~~~~~~~i~~~e~~~~l~~~~~ 327 (472)
T PRK14962 249 DYINAIFNGDVKRVFTVLDDVYYSGK-DYEVLIQQAIEDLVEDLERERANDIIQVSRQLLNILREIKFAEEKRLVCKLGS 327 (472)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhCCcchHHHHHHHHH
Confidence 55555555555555555554443321 11112222332222211112233444444444444444444455555555544
Q ss_pred cCcc
Q psy9003 747 AGLF 750 (1276)
Q Consensus 747 ~~~~ 750 (1276)
..+.
T Consensus 328 ~~~~ 331 (472)
T PRK14962 328 ASIA 331 (472)
T ss_pred HHHH
Confidence 4333
No 348
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=20.41 E-value=2e+02 Score=34.10 Aligned_cols=70 Identities=23% Similarity=0.237 Sum_probs=45.5
Q ss_pred cccceEEEEEecCCC------CCCcc---------------cccccccccccCCChHHHHHHHHHHHHh--cCcCCC---
Q psy9003 110 KLIQSIQYILTGVFG------TPEQL---------------KYLVDECHKAGLFGTPEQLKYLVDECHK--AGLFGT--- 163 (1276)
Q Consensus 110 ~~g~~yky~i~~~~g------rp~~a---------------s~~~de~h~gs~~~y~e~a~~li~y~~~--~~yygt--- 163 (1276)
..|.=||++.|+-.. +|..+ ..=. |.+.|-|.+..||+++++.+-++ .||.|.
T Consensus 41 ~~~~cyk~~fygi~s~~c~q~~P~~~~C~~rC~fC~r~~~~~~~~-~~~~~~~~~peeiv~~~~~~~~~~i~g~~g~~~v 119 (322)
T PRK13762 41 GGRSCYKSKFYGIESHRCVQMTPVVAWCNQRCLFCWRPLEEDVGL-ELKEPEWDDPEEIVEESIKEQRKLLSGYKGNPKV 119 (322)
T ss_pred CCCcccccccccccchheeccCchhHHHhccCceeeccCCCCccc-ccCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCC
Confidence 456778887776555 34333 2111 25667799999999999998654 455452
Q ss_pred ---------------------H---HHHHHHHHHHHHcCCC
Q psy9003 164 ---------------------P---EQLKYLVDECHKAGLF 180 (1276)
Q Consensus 164 ---------------------p---~~l~~~vd~~h~~~i~ 180 (1276)
| .+|..++..+|+.||.
T Consensus 120 ~~~~~~ea~~~~~v~iSl~GEPlL~p~l~eli~~~k~~Gi~ 160 (322)
T PRK13762 120 DREKFEEAMEPKHVAISLSGEPTLYPYLPELIEEFHKRGFT 160 (322)
T ss_pred CHHHhhhccCCCEEEEeCCccccchhhHHHHHHHHHHcCCC
Confidence 2 2577777777777764
No 349
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=20.19 E-value=8.9e+02 Score=28.99 Aligned_cols=123 Identities=15% Similarity=0.165 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEeccccCCcccCCCcCCCCCCCcccccCCCC-CCCCCCCcCCCCCcHHHH---HHHHHH
Q psy9003 1036 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRG-THPLWDSRLFNYSEIEVL---RFLLSN 1111 (1276)
Q Consensus 1036 ~eEfK~LV~alHk~GI~VILDvV~NHt~~~~~~~~~~f~g~~~~Yy~~~~~g-~~~~W~g~~LN~~np~Vr---~~Iids 1111 (1276)
+..||+|++++|+.|-++++-+ +|.+..... .+. + . .|.. .........-..+..++. +.+.++
T Consensus 80 i~~~r~l~d~vh~~G~~i~~QL--~H~G~~~~~-----~~~-~--~--~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~a 147 (337)
T PRK13523 80 IEGLHKLVTFIHDHGAKAAIQL--AHAGRKAEL-----EGD-I--V--APSAIPFDEKSKTPVEMTKEQIKETVLAFKQA 147 (337)
T ss_pred HHHHHHHHHHHHhcCCEEEEEc--cCCCCCCCC-----CCC-c--c--CCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHH
Confidence 6899999999999999998876 566554211 000 0 0 0000 000000000012222222 223344
Q ss_pred HHHHHHhCCCcEEccCCccccccccCCCCCCCCCCCccccCCCCCchHHHHHHHHHHHHHhhC
Q psy9003 1112 LRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKY 1174 (1276)
Q Consensus 1112 l~~Wv~eygVDGFRfD~a~~L~~~d~g~g~~~~~~~~~~~~~~~d~~a~~Fl~el~~~Vr~~~ 1174 (1276)
.+.- .+.|+||.-+-++...+-.. +=..........+|+. -.....|+.++.+.||+.-
T Consensus 148 A~~a-~~aGfDgVeih~ahGyLl~q--FlSp~~N~RtD~yGGs-lenR~Rf~~eii~~ir~~~ 206 (337)
T PRK13523 148 AVRA-KEAGFDVIEIHGAHGYLINE--FLSPLSNKRTDEYGGS-PENRYRFLREIIDAVKEVW 206 (337)
T ss_pred HHHH-HHcCCCEEEEccccchHHHH--hcCCccCCcCCCCCCC-HHHHHHHHHHHHHHHHHhc
Confidence 4443 45799999999874221010 0000011111223332 2235678888888888765
Done!