RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9003
(1276 letters)
>gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in
bacterial and eukaryotic branching enzymes. Branching
enzymes (BEs) catalyze the formation of alpha-1,6 branch
points in either glycogen or starch by cleavage of the
alpha-1,4 glucosidic linkage yielding a non-reducing end
oligosaccharide chain, and subsequent attachment to the
alpha-1,6 position. By increasing the number of
non-reducing ends, glycogen is more reactive to synthesis
and digestion as well as being more soluble. This group
includes bacterial and eukaryotic proteins. The
Alpha-amylase family comprises the largest family of
glycoside hydrolases (GH), with the majority of enzymes
acting on starch, glycogen, and related oligo- and
polysaccharides. These proteins catalyze the
transformation of alpha-1,4 and alpha-1,6 glucosidic
linkages with retention of the anomeric center. The
protein is described as having 3 domains: A, B, C. A is a
(beta/alpha) 8-barrel; B is a loop between the beta 3
strand and alpha 3 helix of A; C is the C-terminal
extension characterized by a Greek key. The majority of
the enzymes have an active site cleft found between
domains A and B where a triad of catalytic residues (Asp,
Glu and Asp) performs catalysis. Other members of this
family have lost the catalytic activity as in the case of
the human 4F2hc, or only have 2 residues that serve as
the catalytic nucleophile and the acid/base, such as
Thermus A4 beta-galactosidase with 2 Glu residues (GH42)
and human alpha-galactosidase with 2 Asp residues (GH31).
The family members are quite extensive and include: alpha
amylase, maltosyltransferase, cyclodextrin
glycotransferase, maltogenic amylase, neopullulanase,
isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 406
Score = 370 bits (951), Expect = e-117
Identities = 134/173 (77%), Positives = 147/173 (84%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092
FGTPE LKYL+D H G+ VLLDVVHSHASKNVLDGLN FDGT C+FH+G RG HPLW
Sbjct: 84 FGTPEDLKYLIDTAHGMGIAVLLDVVHSHASKNVLDGLNMFDGTDGCYFHEGERGNHPLW 143
Query: 1093 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 1152
DSRLFNY + EVLRFLLSNLRW+L+EY+FDGFRFDGVTSMLYH+HG G GFSG Y EYFG
Sbjct: 144 DSRLFNYGKWEVLRFLLSNLRWWLEEYRFDGFRFDGVTSMLYHHHGLGTGFSGDYGEYFG 203
Query: 1153 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRL 1205
LNVD DAL+YLM+AN LH+ YP ITIAEDVSGMP CRPV+EGG GFDYRL
Sbjct: 204 LNVDEDALVYLMLANDLLHELYPNAITIAEDVSGMPGLCRPVSEGGIGFDYRL 256
Score = 179 bits (456), Expect = 7e-49
Identities = 66/81 (81%), Positives = 73/81 (90%)
Query: 930 GMAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLM 989
MAIPDKWI+LLK+ KDEDWNMGNIVHTLTNRRY EKT+AYAESHDQALVGDKT+AFWLM
Sbjct: 257 AMAIPDKWIKLLKEKKDEDWNMGNIVHTLTNRRYGEKTIAYAESHDQALVGDKTLAFWLM 316
Query: 990 DKEMYTHMSTLSDPSLIIDRA 1010
DKEMYT+MS LS + +IDR
Sbjct: 317 DKEMYTNMSVLSPLTPVIDRG 337
Score = 75.3 bits (186), Expect = 5e-14
Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 6/61 (9%)
Query: 879 PQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQG------MA 932
P++ +++ +P KP L+IYE+HVG+ ++E K ASY +F V+PRI K G MA
Sbjct: 1 PEEPYQFKHPRPPKPRALRIYEAHVGMSSEEPKVASYREFTDNVLPRIKKLGYNAIQLMA 60
Query: 933 I 933
I
Sbjct: 61 I 61
Score = 48.8 bits (117), Expect = 1e-05
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 769 FGTPEQLKYLVDECHKAGLLCFMHVV 794
FGTPE LKYL+D H G+ + VV
Sbjct: 84 FGTPEDLKYLIDTAHGMGIAVLLDVV 109
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 123 FGTPEQLKYLVDECHKAGLF 142
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 142 FGTPEQLKYLVDECHKAGLF 161
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 161 FGTPEQLKYLVDECHKAGLF 180
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 180 FGTPEQLKYLVDECHKAGLF 199
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 199 FGTPEQLKYLVDECHKAGLF 218
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 218 FGTPEQLKYLVDECHKAGLF 237
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 237 FGTPEQLKYLVDECHKAGLF 256
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 256 FGTPEQLKYLVDECHKAGLF 275
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 275 FGTPEQLKYLVDECHKAGLF 294
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 294 FGTPEQLKYLVDECHKAGLF 313
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 313 FGTPEQLKYLVDECHKAGLF 332
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 332 FGTPEQLKYLVDECHKAGLF 351
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 351 FGTPEQLKYLVDECHKAGLF 370
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 370 FGTPEQLKYLVDECHKAGLF 389
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 389 FGTPEQLKYLVDECHKAGLF 408
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 408 FGTPEQLKYLVDECHKAGLF 427
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 427 FGTPEQLKYLVDECHKAGLF 446
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 446 FGTPEQLKYLVDECHKAGLF 465
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 465 FGTPEQLKYLVDECHKAGLF 484
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 484 FGTPEQLKYLVDECHKAGLF 503
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 503 FGTPEQLKYLVDECHKAGLF 522
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 522 FGTPEQLKYLVDECHKAGLF 541
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 541 FGTPEQLKYLVDECHKAGLF 560
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 560 FGTPEQLKYLVDECHKAGLF 579
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 579 FGTPEQLKYLVDECHKAGLF 598
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 598 FGTPEQLKYLVDECHKAGLF 617
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 617 FGTPEQLKYLVDECHKAGLF 636
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 636 FGTPEQLKYLVDECHKAGLF 655
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 655 FGTPEQLKYLVDECHKAGLF 674
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 674 FGTPEQLKYLVDECHKAGLF 693
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 693 FGTPEQLKYLVDECHKAGLF 712
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 712 FGTPEQLKYLVDECHKAGLF 731
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 731 FGTPEQLKYLVDECHKAGLF 750
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
Score = 41.8 bits (99), Expect = 0.002
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 750 FGTPEQLKYLVDECHKAGLF 769
FGTPE LKYL+D H G+
Sbjct: 84 FGTPEDLKYLIDTAHGMGIA 103
>gnl|CDD|215246 PLN02447, PLN02447, 1,4-alpha-glucan-branching enzyme.
Length = 758
Score = 335 bits (861), Expect = e-100
Identities = 124/173 (71%), Positives = 140/173 (80%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092
GTPE LKYL+D+ H GL VL+DVVHSHASKN LDGLN FDGT +FH GPRG H LW
Sbjct: 296 SGTPEDLKYLIDKAHSLGLRVLMDVVHSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLW 355
Query: 1093 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 1152
DSRLFNY EVLRFLLSNLRW+L+EY+FDGFRFDGVTSMLYH+HG F+G+Y+EYFG
Sbjct: 356 DSRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYNEYFG 415
Query: 1153 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRL 1205
+ D DA++YLM+AN LH YPE +TIAEDVSGMP CRPV EGG GFDYRL
Sbjct: 416 MATDVDAVVYLMLANDLLHGLYPEAVTIAEDVSGMPTLCRPVQEGGVGFDYRL 468
Score = 172 bits (437), Expect = 5e-44
Identities = 63/79 (79%), Positives = 71/79 (89%)
Query: 931 MAIPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAFWLMD 990
MAIPDKWIELLK+ +DEDW+MG+IVHTLTNRRY EK VAYAESHDQALVGDKTIAFWLMD
Sbjct: 470 MAIPDKWIELLKEKRDEDWSMGDIVHTLTNRRYTEKCVAYAESHDQALVGDKTIAFWLMD 529
Query: 991 KEMYTHMSTLSDPSLIIDR 1009
KEMY MSTL+ + ++DR
Sbjct: 530 KEMYDGMSTLTPATPVVDR 548
Score = 128 bits (323), Expect = 4e-30
Identities = 54/143 (37%), Positives = 78/143 (54%), Gaps = 8/143 (5%)
Query: 798 GDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWA 857
GDFNNWN K +FG WE+ LP + DGS + H S+VK+ + G +DR+ W
Sbjct: 132 GDFNNWNPNAHWMTKNEFGVWEIFLP-DADGSPAIPHGSRVKIRMETPDGRWVDRIPAWI 190
Query: 858 TYVT-EPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYE 916
Y P +G Y W+P ++K+ + +P +P L+IYE+HVG+ ++E K SY
Sbjct: 191 KYAVQAPGEIGAPYNGVYWDPPEEEKYVFKHPRPPRPAALRIYEAHVGMSSEEPKVNSYR 250
Query: 917 DFVRVVIPRIVKQG------MAI 933
+F V+PRI G MAI
Sbjct: 251 EFADDVLPRIKALGYNAVQLMAI 273
Score = 79.7 bits (197), Expect = 6e-15
Identities = 29/55 (52%), Positives = 41/55 (74%)
Query: 1217 FDAAMNTTEERFKWLSADPGYVSTKHEGDKVIIFERAGLLFAFNFNGTQSFTDYR 1271
FD AM +E++ +L+++ YVS K EGDKVI+FER L+F FNF+ T S++DYR
Sbjct: 616 FDRAMMHLDEKYGFLTSEHQYVSRKDEGDKVIVFERGDLVFVFNFHPTNSYSDYR 670
Score = 69.3 bits (170), Expect = 1e-11
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 10 ASIHIPELH---KLLERDPYLNPYQYEMKRRYGLMVNFLEQFEKHEGGIEKFTTSYNKYG 66
A+ P + E DP L PY+ ++ RY E+ EK+EGG+E F+ Y K+G
Sbjct: 49 AAASPPPPGDGLGIYEIDPMLEPYEDHLRYRYSRYRRRREEIEKNEGGLEAFSRGYEKFG 108
Query: 67 IHVQADNSVRCFEWAPSAQQLYLTG 91
+ +++ + EWAP A+ L G
Sbjct: 109 FN-RSEGGITYREWAPGAKAAALIG 132
Score = 47.7 bits (114), Expect = 3e-05
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 769 FGTPEQLKYLVDECHKAGLLCFMHVV 794
GTPE LKYL+D+ H GL M VV
Sbjct: 296 SGTPEDLKYLIDKAHSLGLRVLMDVV 321
Score = 38.5 bits (90), Expect = 0.023
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 123 FGTPEQLKYLVDECHKAGL 141
GTPE LKYL+D+ H GL
Sbjct: 296 SGTPEDLKYLIDKAHSLGL 314
Score = 38.5 bits (90), Expect = 0.023
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 142 FGTPEQLKYLVDECHKAGL 160
GTPE LKYL+D+ H GL
Sbjct: 296 SGTPEDLKYLIDKAHSLGL 314
Score = 38.5 bits (90), Expect = 0.023
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 161 FGTPEQLKYLVDECHKAGL 179
GTPE LKYL+D+ H GL
Sbjct: 296 SGTPEDLKYLIDKAHSLGL 314
Score = 38.5 bits (90), Expect = 0.023
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 180 FGTPEQLKYLVDECHKAGL 198
GTPE LKYL+D+ H GL
Sbjct: 296 SGTPEDLKYLIDKAHSLGL 314
Score = 38.5 bits (90), Expect = 0.023
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 199 FGTPEQLKYLVDECHKAGL 217
GTPE LKYL+D+ H GL
Sbjct: 296 SGTPEDLKYLIDKAHSLGL 314
Score = 38.5 bits (90), Expect = 0.023
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 218 FGTPEQLKYLVDECHKAGL 236
GTPE LKYL+D+ H GL
Sbjct: 296 SGTPEDLKYLIDKAHSLGL 314
Score = 38.5 bits (90), Expect = 0.023
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 237 FGTPEQLKYLVDECHKAGL 255
GTPE LKYL+D+ H GL
Sbjct: 296 SGTPEDLKYLIDKAHSLGL 314
Score = 38.5 bits (90), Expect = 0.023
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 256 FGTPEQLKYLVDECHKAGL 274
GTPE LKYL+D+ H GL
Sbjct: 296 SGTPEDLKYLIDKAHSLGL 314
Score = 38.5 bits (90), Expect = 0.023
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 275 FGTPEQLKYLVDECHKAGL 293
GTPE LKYL+D+ H GL
Sbjct: 296 SGTPEDLKYLIDKAHSLGL 314
Score = 38.5 bits (90), Expect = 0.023
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 294 FGTPEQLKYLVDECHKAGL 312
GTPE LKYL+D+ H GL
Sbjct: 296 SGTPEDLKYLIDKAHSLGL 314
Score = 38.5 bits (90), Expect = 0.023
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 313 FGTPEQLKYLVDECHKAGL 331
GTPE LKYL+D+ H GL
Sbjct: 296 SGTPEDLKYLIDKAHSLGL 314
Score = 38.5 bits (90), Expect = 0.023
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 332 FGTPEQLKYLVDECHKAGL 350
GTPE LKYL+D+ H GL
Sbjct: 296 SGTPEDLKYLIDKAHSLGL 314
Score = 38.5 bits (90), Expect = 0.023
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 351 FGTPEQLKYLVDECHKAGL 369
GTPE LKYL+D+ H GL
Sbjct: 296 SGTPEDLKYLIDKAHSLGL 314
Score = 38.5 bits (90), Expect = 0.023
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 370 FGTPEQLKYLVDECHKAGL 388
GTPE LKYL+D+ H GL
Sbjct: 296 SGTPEDLKYLIDKAHSLGL 314
Score = 38.5 bits (90), Expect = 0.023
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 389 FGTPEQLKYLVDECHKAGL 407
GTPE LKYL+D+ H GL
Sbjct: 296 SGTPEDLKYLIDKAHSLGL 314
Score = 38.5 bits (90), Expect = 0.023
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 408 FGTPEQLKYLVDECHKAGL 426
GTPE LKYL+D+ H GL
Sbjct: 296 SGTPEDLKYLIDKAHSLGL 314
Score = 38.5 bits (90), Expect = 0.023
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 427 FGTPEQLKYLVDECHKAGL 445
GTPE LKYL+D+ H GL
Sbjct: 296 SGTPEDLKYLIDKAHSLGL 314
Score = 38.5 bits (90), Expect = 0.023
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 446 FGTPEQLKYLVDECHKAGL 464
GTPE LKYL+D+ H GL
Sbjct: 296 SGTPEDLKYLIDKAHSLGL 314
Score = 38.5 bits (90), Expect = 0.023
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 465 FGTPEQLKYLVDECHKAGL 483
GTPE LKYL+D+ H GL
Sbjct: 296 SGTPEDLKYLIDKAHSLGL 314
Score = 38.5 bits (90), Expect = 0.023
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 484 FGTPEQLKYLVDECHKAGL 502
GTPE LKYL+D+ H GL
Sbjct: 296 SGTPEDLKYLIDKAHSLGL 314
Score = 38.5 bits (90), Expect = 0.023
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 503 FGTPEQLKYLVDECHKAGL 521
GTPE LKYL+D+ H GL
Sbjct: 296 SGTPEDLKYLIDKAHSLGL 314
Score = 38.5 bits (90), Expect = 0.023
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 522 FGTPEQLKYLVDECHKAGL 540
GTPE LKYL+D+ H GL
Sbjct: 296 SGTPEDLKYLIDKAHSLGL 314
Score = 38.5 bits (90), Expect = 0.023
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 541 FGTPEQLKYLVDECHKAGL 559
GTPE LKYL+D+ H GL
Sbjct: 296 SGTPEDLKYLIDKAHSLGL 314
Score = 38.5 bits (90), Expect = 0.023
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 560 FGTPEQLKYLVDECHKAGL 578
GTPE LKYL+D+ H GL
Sbjct: 296 SGTPEDLKYLIDKAHSLGL 314
Score = 38.5 bits (90), Expect = 0.023
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 579 FGTPEQLKYLVDECHKAGL 597
GTPE LKYL+D+ H GL
Sbjct: 296 SGTPEDLKYLIDKAHSLGL 314
Score = 38.5 bits (90), Expect = 0.023
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 598 FGTPEQLKYLVDECHKAGL 616
GTPE LKYL+D+ H GL
Sbjct: 296 SGTPEDLKYLIDKAHSLGL 314
Score = 38.5 bits (90), Expect = 0.023
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 617 FGTPEQLKYLVDECHKAGL 635
GTPE LKYL+D+ H GL
Sbjct: 296 SGTPEDLKYLIDKAHSLGL 314
Score = 38.5 bits (90), Expect = 0.023
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 636 FGTPEQLKYLVDECHKAGL 654
GTPE LKYL+D+ H GL
Sbjct: 296 SGTPEDLKYLIDKAHSLGL 314
Score = 38.5 bits (90), Expect = 0.023
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 655 FGTPEQLKYLVDECHKAGL 673
GTPE LKYL+D+ H GL
Sbjct: 296 SGTPEDLKYLIDKAHSLGL 314
Score = 38.5 bits (90), Expect = 0.023
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 674 FGTPEQLKYLVDECHKAGL 692
GTPE LKYL+D+ H GL
Sbjct: 296 SGTPEDLKYLIDKAHSLGL 314
Score = 38.5 bits (90), Expect = 0.023
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 693 FGTPEQLKYLVDECHKAGL 711
GTPE LKYL+D+ H GL
Sbjct: 296 SGTPEDLKYLIDKAHSLGL 314
Score = 38.5 bits (90), Expect = 0.023
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 712 FGTPEQLKYLVDECHKAGL 730
GTPE LKYL+D+ H GL
Sbjct: 296 SGTPEDLKYLIDKAHSLGL 314
Score = 38.5 bits (90), Expect = 0.023
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 731 FGTPEQLKYLVDECHKAGL 749
GTPE LKYL+D+ H GL
Sbjct: 296 SGTPEDLKYLIDKAHSLGL 314
Score = 38.5 bits (90), Expect = 0.023
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 750 FGTPEQLKYLVDECHKAGL 768
GTPE LKYL+D+ H GL
Sbjct: 296 SGTPEDLKYLIDKAHSLGL 314
>gnl|CDD|215519 PLN02960, PLN02960, alpha-amylase.
Length = 897
Score = 217 bits (555), Expect = 3e-58
Identities = 90/171 (52%), Positives = 117/171 (68%), Gaps = 1/171 (0%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092
FGTP+ K LVDE H GL V LD+VHS+A+ + + GL+ FDG+ C+FH G RG H W
Sbjct: 462 FGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRW 521
Query: 1093 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 1152
+R+F Y + EVL FLLSNL W++ EY+ DGF+F + SMLY ++G F+G DEY
Sbjct: 522 GTRMFKYGDHEVLHFLLSNLNWWVTEYRVDGFQFHSLGSMLYTHNGFAS-FTGDLDEYCN 580
Query: 1153 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDY 1203
VD DALIYL++AN+ LH +P IITIAED + P C P ++GG GFDY
Sbjct: 581 QYVDRDALIYLILANEMLHQLHPNIITIAEDATFYPGLCEPTSQGGLGFDY 631
Score = 83.3 bits (206), Expect = 4e-16
Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 850 LDRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQE 909
L+R+ WATYV P G + W P P++ +KW +PK P +L+IYE HVGI E
Sbjct: 351 LERVPAWATYV-LPDPDGKQWYAIHWEPPPEEAYKWKFERPKVPKSLRIYECHVGISGSE 409
Query: 910 QKCASYEDFVRVVIPRIVKQG 930
K +S+++F + V+P + K G
Sbjct: 410 PKISSFKEFTQKVLPHVKKAG 430
Score = 49.1 bits (117), Expect = 1e-05
Identities = 20/56 (35%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 931 MAIPDKWIELLKKFKDEDWNMGNIVHTL-TNRRYMEKTVAYAESHDQALVGDKTIA 985
++ + W+ LL+ D++W+M IV TL N+ +K ++YAE+H+Q++ G K+ A
Sbjct: 635 LSPSEMWLSLLENVPDQEWSMSKIVSTLVKNKENADKMLSYAENHNQSISGGKSFA 690
Score = 39.4 bits (92), Expect = 0.013
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 769 FGTPEQLKYLVDECHKAGLLCFMHVV 794
FGTP+ K LVDE H GLL F+ +V
Sbjct: 462 FGTPDDFKRLVDEAHGLGLLVFLDIV 487
Score = 38.7 bits (90), Expect = 0.027
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 1217 FDAAMNTTEERFKWLSADPGYVSTKHEGD--KVIIFERAGLLFAFNFNGTQSFTDY 1270
FD A+ +E++ LS G + H D VI F R LLFAFNF+ T S+ +Y
Sbjct: 776 FDKALMALDEKYLILSR--GLPNIHHVNDTSMVISFTRGPLLFAFNFHPTNSYEEY 829
Score = 34.4 bits (79), Expect = 0.42
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 100 IMEEASLSSIKLIQSIQYILTGVFGTPEQLKYLVDECHKAGL 141
+ E SS+ + + ++ FGTP+ K LVDE H GL
Sbjct: 439 VQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGL 480
Score = 31.7 bits (72), Expect = 2.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 142 FGTPEQLKYLVDECHKAGL 160
FGTP+ K LVDE H GL
Sbjct: 462 FGTPDDFKRLVDEAHGLGL 480
Score = 31.7 bits (72), Expect = 2.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 161 FGTPEQLKYLVDECHKAGL 179
FGTP+ K LVDE H GL
Sbjct: 462 FGTPDDFKRLVDEAHGLGL 480
Score = 31.7 bits (72), Expect = 2.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 180 FGTPEQLKYLVDECHKAGL 198
FGTP+ K LVDE H GL
Sbjct: 462 FGTPDDFKRLVDEAHGLGL 480
Score = 31.7 bits (72), Expect = 2.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 199 FGTPEQLKYLVDECHKAGL 217
FGTP+ K LVDE H GL
Sbjct: 462 FGTPDDFKRLVDEAHGLGL 480
Score = 31.7 bits (72), Expect = 2.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 218 FGTPEQLKYLVDECHKAGL 236
FGTP+ K LVDE H GL
Sbjct: 462 FGTPDDFKRLVDEAHGLGL 480
Score = 31.7 bits (72), Expect = 2.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 237 FGTPEQLKYLVDECHKAGL 255
FGTP+ K LVDE H GL
Sbjct: 462 FGTPDDFKRLVDEAHGLGL 480
Score = 31.7 bits (72), Expect = 2.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 256 FGTPEQLKYLVDECHKAGL 274
FGTP+ K LVDE H GL
Sbjct: 462 FGTPDDFKRLVDEAHGLGL 480
Score = 31.7 bits (72), Expect = 2.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 275 FGTPEQLKYLVDECHKAGL 293
FGTP+ K LVDE H GL
Sbjct: 462 FGTPDDFKRLVDEAHGLGL 480
Score = 31.7 bits (72), Expect = 2.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 294 FGTPEQLKYLVDECHKAGL 312
FGTP+ K LVDE H GL
Sbjct: 462 FGTPDDFKRLVDEAHGLGL 480
Score = 31.7 bits (72), Expect = 2.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 313 FGTPEQLKYLVDECHKAGL 331
FGTP+ K LVDE H GL
Sbjct: 462 FGTPDDFKRLVDEAHGLGL 480
Score = 31.7 bits (72), Expect = 2.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 332 FGTPEQLKYLVDECHKAGL 350
FGTP+ K LVDE H GL
Sbjct: 462 FGTPDDFKRLVDEAHGLGL 480
Score = 31.7 bits (72), Expect = 2.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 351 FGTPEQLKYLVDECHKAGL 369
FGTP+ K LVDE H GL
Sbjct: 462 FGTPDDFKRLVDEAHGLGL 480
Score = 31.7 bits (72), Expect = 2.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 370 FGTPEQLKYLVDECHKAGL 388
FGTP+ K LVDE H GL
Sbjct: 462 FGTPDDFKRLVDEAHGLGL 480
Score = 31.7 bits (72), Expect = 2.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 389 FGTPEQLKYLVDECHKAGL 407
FGTP+ K LVDE H GL
Sbjct: 462 FGTPDDFKRLVDEAHGLGL 480
Score = 31.7 bits (72), Expect = 2.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 408 FGTPEQLKYLVDECHKAGL 426
FGTP+ K LVDE H GL
Sbjct: 462 FGTPDDFKRLVDEAHGLGL 480
Score = 31.7 bits (72), Expect = 2.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 427 FGTPEQLKYLVDECHKAGL 445
FGTP+ K LVDE H GL
Sbjct: 462 FGTPDDFKRLVDEAHGLGL 480
Score = 31.7 bits (72), Expect = 2.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 446 FGTPEQLKYLVDECHKAGL 464
FGTP+ K LVDE H GL
Sbjct: 462 FGTPDDFKRLVDEAHGLGL 480
Score = 31.7 bits (72), Expect = 2.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 465 FGTPEQLKYLVDECHKAGL 483
FGTP+ K LVDE H GL
Sbjct: 462 FGTPDDFKRLVDEAHGLGL 480
Score = 31.7 bits (72), Expect = 2.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 484 FGTPEQLKYLVDECHKAGL 502
FGTP+ K LVDE H GL
Sbjct: 462 FGTPDDFKRLVDEAHGLGL 480
Score = 31.7 bits (72), Expect = 2.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 503 FGTPEQLKYLVDECHKAGL 521
FGTP+ K LVDE H GL
Sbjct: 462 FGTPDDFKRLVDEAHGLGL 480
Score = 31.7 bits (72), Expect = 2.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 522 FGTPEQLKYLVDECHKAGL 540
FGTP+ K LVDE H GL
Sbjct: 462 FGTPDDFKRLVDEAHGLGL 480
Score = 31.7 bits (72), Expect = 2.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 541 FGTPEQLKYLVDECHKAGL 559
FGTP+ K LVDE H GL
Sbjct: 462 FGTPDDFKRLVDEAHGLGL 480
Score = 31.7 bits (72), Expect = 2.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 560 FGTPEQLKYLVDECHKAGL 578
FGTP+ K LVDE H GL
Sbjct: 462 FGTPDDFKRLVDEAHGLGL 480
Score = 31.7 bits (72), Expect = 2.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 579 FGTPEQLKYLVDECHKAGL 597
FGTP+ K LVDE H GL
Sbjct: 462 FGTPDDFKRLVDEAHGLGL 480
Score = 31.7 bits (72), Expect = 2.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 598 FGTPEQLKYLVDECHKAGL 616
FGTP+ K LVDE H GL
Sbjct: 462 FGTPDDFKRLVDEAHGLGL 480
Score = 31.7 bits (72), Expect = 2.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 617 FGTPEQLKYLVDECHKAGL 635
FGTP+ K LVDE H GL
Sbjct: 462 FGTPDDFKRLVDEAHGLGL 480
Score = 31.7 bits (72), Expect = 2.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 636 FGTPEQLKYLVDECHKAGL 654
FGTP+ K LVDE H GL
Sbjct: 462 FGTPDDFKRLVDEAHGLGL 480
Score = 31.7 bits (72), Expect = 2.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 655 FGTPEQLKYLVDECHKAGL 673
FGTP+ K LVDE H GL
Sbjct: 462 FGTPDDFKRLVDEAHGLGL 480
Score = 31.7 bits (72), Expect = 2.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 674 FGTPEQLKYLVDECHKAGL 692
FGTP+ K LVDE H GL
Sbjct: 462 FGTPDDFKRLVDEAHGLGL 480
Score = 31.7 bits (72), Expect = 2.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 693 FGTPEQLKYLVDECHKAGL 711
FGTP+ K LVDE H GL
Sbjct: 462 FGTPDDFKRLVDEAHGLGL 480
Score = 31.7 bits (72), Expect = 2.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 712 FGTPEQLKYLVDECHKAGL 730
FGTP+ K LVDE H GL
Sbjct: 462 FGTPDDFKRLVDEAHGLGL 480
Score = 31.7 bits (72), Expect = 2.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 731 FGTPEQLKYLVDECHKAGL 749
FGTP+ K LVDE H GL
Sbjct: 462 FGTPDDFKRLVDEAHGLGL 480
Score = 31.7 bits (72), Expect = 2.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 750 FGTPEQLKYLVDECHKAGL 768
FGTP+ K LVDE H GL
Sbjct: 462 FGTPDDFKRLVDEAHGLGL 480
>gnl|CDD|178782 PLN03244, PLN03244, alpha-amylase; Provisional.
Length = 872
Score = 192 bits (489), Expect = 4e-50
Identities = 85/171 (49%), Positives = 119/171 (69%), Gaps = 1/171 (0%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092
+GTP+ K LVDE H GL V LD+VHS+A+ + + GL+ FDG+ C+FH G RG H W
Sbjct: 437 YGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHW 496
Query: 1093 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 1152
+R+F Y +++VL FL+SNL W++ EYQ DGF+F + SM+Y ++G F+G D+Y
Sbjct: 497 GTRMFKYGDLDVLHFLISNLNWWITEYQIDGFQFHSLASMIYTHNGFAS-FNGDLDDYCN 555
Query: 1153 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDY 1203
VD DAL+YL++AN+ LH +P+IITIAED + P C P ++GG GFDY
Sbjct: 556 QYVDKDALMYLILANEILHALHPKIITIAEDATYYPGLCEPTSQGGLGFDY 606
Score = 72.7 bits (178), Expect = 1e-12
Identities = 33/73 (45%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 850 LDRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQE 909
L+R+ WATYV P G W P P+ HKW + KPK P++L+IYE HVGI E
Sbjct: 356 LERIPAWATYV-LPDDDGKQAFAIHWEPPPEAAHKWKNMKPKVPESLRIYECHVGISGSE 414
Query: 910 QKCASYEDFVRVV 922
K +S+E+F V
Sbjct: 415 PKISSFEEFTEKV 427
Score = 54.2 bits (130), Expect = 5e-07
Identities = 21/56 (37%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 931 MAIPDKWIELLKKFKDEDWNMGNIVHTLT-NRRYMEKTVAYAESHDQALVGDKTIA 985
++ PD W++ L D +W+M IV TL N+ Y +K ++YAE+H+Q++ G ++ A
Sbjct: 610 LSAPDMWLDFLDNIPDHEWSMSKIVSTLIANKEYADKMLSYAENHNQSISGGRSFA 665
Score = 35.7 bits (82), Expect = 0.18
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 10/68 (14%)
Query: 734 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHK-------AGLFGTPEQLKYLVDECHKAG 786
PE L+ + ECH G+ G+ ++ + K + +GTP+ K LVDE H G
Sbjct: 398 PESLR--IYECH-VGISGSEPKISSFEEFTEKVTNFFAASSRYGTPDDFKRLVDEAHGLG 454
Query: 787 LLCFMHVV 794
LL F+ +V
Sbjct: 455 LLVFLDIV 462
>gnl|CDD|200461 cd11322, AmyAc_Glg_BE, Alpha amylase catalytic domain found in the
Glycogen branching enzyme (also called 1,4-alpha-glucan
branching enzyme). The glycogen branching enzyme
catalyzes the third step of glycogen biosynthesis by the
cleavage of an alpha-(1,4)-glucosidic linkage and the
formation a new alpha-(1,6)-branch by subsequent transfer
of cleaved oligosaccharide. They are part of a group
called branching enzymes which catalyze the formation of
alpha-1,6 branch points in either glycogen or starch.
This group includes proteins from bacteria, eukaryotes,
and archaea. The Alpha-amylase family comprises the
largest family of glycoside hydrolases (GH), with the
majority of enzymes acting on starch, glycogen, and
related oligo- and polysaccharides. These proteins
catalyze the transformation of alpha-1,4 and alpha-1,6
glucosidic linkages with retention of the anomeric
center. The protein is described as having 3 domains: A,
B, C. A is a (beta/alpha) 8-barrel; B is a loop between
the beta 3 strand and alpha 3 helix of A; C is the
C-terminal extension characterized by a Greek key. The
majority of the enzymes have an active site cleft found
between domains A and B where a triad of catalytic
residues (Asp, Glu and Asp) performs catalysis. Other
members of this family have lost the catalytic activity
as in the case of the human 4F2hc, or only have 2
residues that serve as the catalytic nucleophile and the
acid/base, such as Thermus A4 beta-galactosidase with 2
Glu residues (GH42) and human alpha-galactosidase with 2
Asp residues (GH31). The family members are quite
extensive and include: alpha amylase,
maltosyltransferase, cyclodextrin glycotransferase,
maltogenic amylase, neopullulanase, isoamylase,
1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 402
Score = 159 bits (405), Expect = 4e-42
Identities = 72/172 (41%), Positives = 101/172 (58%), Gaps = 5/172 (2%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPR-GTHPL 1091
+GTP+ KY VD CH+AG+ V+LD V H K+ GL FDGT + + PR G HP
Sbjct: 104 YGTPDDFKYFVDACHQAGIGVILDWVPGHFPKD-DHGLARFDGT-PLYEYPDPRKGEHPD 161
Query: 1092 WDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYF 1151
W + F+Y EV FL+SN ++L+EY DG R D V+SMLY ++ G G +
Sbjct: 162 WGTLNFDYGRNEVRSFLISNALYWLEEYHIDGLRVDAVSSMLYLDYDRGPGEWIPNI--Y 219
Query: 1152 GLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDY 1203
G N + +A+ +L N +H ++P ++TIAE+ + P PV EGG GFDY
Sbjct: 220 GGNENLEAIEFLKELNTVIHKRHPGVLTIAEESTAWPGVTAPVEEGGLGFDY 271
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 123 FGTPEQLKYLVDECHKAGL 141
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 142 FGTPEQLKYLVDECHKAGL 160
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 161 FGTPEQLKYLVDECHKAGL 179
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 180 FGTPEQLKYLVDECHKAGL 198
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 199 FGTPEQLKYLVDECHKAGL 217
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 218 FGTPEQLKYLVDECHKAGL 236
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 237 FGTPEQLKYLVDECHKAGL 255
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 256 FGTPEQLKYLVDECHKAGL 274
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 275 FGTPEQLKYLVDECHKAGL 293
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 294 FGTPEQLKYLVDECHKAGL 312
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 313 FGTPEQLKYLVDECHKAGL 331
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 332 FGTPEQLKYLVDECHKAGL 350
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 351 FGTPEQLKYLVDECHKAGL 369
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 370 FGTPEQLKYLVDECHKAGL 388
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 389 FGTPEQLKYLVDECHKAGL 407
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 408 FGTPEQLKYLVDECHKAGL 426
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 427 FGTPEQLKYLVDECHKAGL 445
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 446 FGTPEQLKYLVDECHKAGL 464
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 465 FGTPEQLKYLVDECHKAGL 483
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 484 FGTPEQLKYLVDECHKAGL 502
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 503 FGTPEQLKYLVDECHKAGL 521
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 522 FGTPEQLKYLVDECHKAGL 540
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 541 FGTPEQLKYLVDECHKAGL 559
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 560 FGTPEQLKYLVDECHKAGL 578
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 579 FGTPEQLKYLVDECHKAGL 597
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 598 FGTPEQLKYLVDECHKAGL 616
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 617 FGTPEQLKYLVDECHKAGL 635
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 636 FGTPEQLKYLVDECHKAGL 654
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 655 FGTPEQLKYLVDECHKAGL 673
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 674 FGTPEQLKYLVDECHKAGL 692
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 693 FGTPEQLKYLVDECHKAGL 711
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 712 FGTPEQLKYLVDECHKAGL 730
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 731 FGTPEQLKYLVDECHKAGL 749
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 750 FGTPEQLKYLVDECHKAGL 768
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
Score = 40.6 bits (96), Expect = 0.004
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 769 FGTPEQLKYLVDECHKAGL 787
+GTP+ KY VD CH+AG+
Sbjct: 104 YGTPDDFKYFVDACHQAGI 122
>gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate
transport and metabolism].
Length = 628
Score = 162 bits (411), Expect = 2e-41
Identities = 67/172 (38%), Positives = 91/172 (52%), Gaps = 3/172 (1%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092
+GTPE K LVD H+AG+ V+LD V +H + + L FDGT D RG H W
Sbjct: 210 YGTPEDFKALVDAAHQAGIGVILDWVPNHFPPDG-NYLARFDGTFLYEHEDPRRGEHTDW 268
Query: 1093 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 1152
+ +FNY EV FLL+N ++L+EY DG R D V SMLY +EY G
Sbjct: 269 GTAIFNYGRNEVRNFLLANALYWLEEYHIDGLRVDAVASMLY-LDYSRAEGEWVPNEY-G 326
Query: 1153 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYR 1204
+ +A +L N +H++ P +TIAE+ + P PV GG GF Y+
Sbjct: 327 GRENLEAAEFLRNLNSLIHEEEPGAMTIAEESTDDPHVTLPVAIGGLGFGYK 378
Score = 61.9 bits (151), Expect = 2e-09
Identities = 30/137 (21%), Positives = 54/137 (39%), Gaps = 16/137 (11%)
Query: 798 GDFNNWN-REEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPW 856
GDFN+W+ R + + G WEL +P P G+ K + + G L + P+
Sbjct: 54 GDFNDWDGRRMPMRDRKESGIWELFVPGAPPGTR-------YKYELIDPSGQLRLKADPY 106
Query: 857 ATYVTEPPVVGHAYEQRIWNPKPQ--DKHKWTSSKPKKPDN-LKIYESHVGICTQEQKCA 913
A E + + + +W + + + IYE HVG T + +
Sbjct: 107 ARR-QEVGPHTASQ---VVDLPDYEWQDERWDRAWRGRFWEPIVIYELHVGSFTPD-RFL 161
Query: 914 SYEDFVRVVIPRIVKQG 930
Y + ++P + + G
Sbjct: 162 GYFELAIELLPYLKELG 178
Score = 44.2 bits (105), Expect = 4e-04
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 769 FGTPEQLKYLVDECHKAGLLCFMHVV 794
+GTPE K LVD H+AG+ + V
Sbjct: 210 YGTPEDFKALVDAAHQAGIGVILDWV 235
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 123 FGTPEQLKYLVDECHKAGL 141
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 142 FGTPEQLKYLVDECHKAGL 160
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 161 FGTPEQLKYLVDECHKAGL 179
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 180 FGTPEQLKYLVDECHKAGL 198
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 199 FGTPEQLKYLVDECHKAGL 217
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 218 FGTPEQLKYLVDECHKAGL 236
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 237 FGTPEQLKYLVDECHKAGL 255
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 256 FGTPEQLKYLVDECHKAGL 274
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 275 FGTPEQLKYLVDECHKAGL 293
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 294 FGTPEQLKYLVDECHKAGL 312
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 313 FGTPEQLKYLVDECHKAGL 331
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 332 FGTPEQLKYLVDECHKAGL 350
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 351 FGTPEQLKYLVDECHKAGL 369
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 370 FGTPEQLKYLVDECHKAGL 388
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 389 FGTPEQLKYLVDECHKAGL 407
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 408 FGTPEQLKYLVDECHKAGL 426
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 427 FGTPEQLKYLVDECHKAGL 445
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 446 FGTPEQLKYLVDECHKAGL 464
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 465 FGTPEQLKYLVDECHKAGL 483
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 484 FGTPEQLKYLVDECHKAGL 502
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 503 FGTPEQLKYLVDECHKAGL 521
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 522 FGTPEQLKYLVDECHKAGL 540
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 541 FGTPEQLKYLVDECHKAGL 559
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 560 FGTPEQLKYLVDECHKAGL 578
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 579 FGTPEQLKYLVDECHKAGL 597
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 598 FGTPEQLKYLVDECHKAGL 616
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 617 FGTPEQLKYLVDECHKAGL 635
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 636 FGTPEQLKYLVDECHKAGL 654
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 655 FGTPEQLKYLVDECHKAGL 673
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 674 FGTPEQLKYLVDECHKAGL 692
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 693 FGTPEQLKYLVDECHKAGL 711
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 712 FGTPEQLKYLVDECHKAGL 730
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 731 FGTPEQLKYLVDECHKAGL 749
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
Score = 41.1 bits (97), Expect = 0.004
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 750 FGTPEQLKYLVDECHKAGL 768
+GTPE K LVD H+AG+
Sbjct: 210 YGTPEDFKALVDAAHQAGI 228
Score = 35.0 bits (81), Expect = 0.28
Identities = 11/83 (13%), Positives = 26/83 (31%), Gaps = 3/83 (3%)
Query: 928 KQGMA-IPDKWIELLKKFKDEDWNMGNIVHTLTNRRYMEKTVAYAESHDQALVGDKTIAF 986
K M + D K ++ G + L + V SHD+ + G +++
Sbjct: 378 KWNMGWMHDTLFYFGKDPVYRKYHHGELTFGLL--YAFSENVVLPLSHDEVVHGKRSLGE 435
Query: 987 WLMDKEMYTHMSTLSDPSLIIDR 1009
+ + + + +
Sbjct: 436 RMPGDAWQKFANLRALAAYMWLH 458
Score = 31.9 bits (73), Expect = 2.3
Identities = 12/55 (21%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 1217 FDAAMNTTEERFKWLSADPGYVSTKHEGDKVIIFERAGLLFAFNFNGTQSFTDYR 1271
+ E F+W+ AD S + ++ R L N DYR
Sbjct: 515 PLHEQDFQPEGFEWIDADDAENS-VLAFYRRLLALRHEHLVVVNNFTPVPRVDYR 568
>gnl|CDD|237052 PRK12313, PRK12313, glycogen branching enzyme; Provisional.
Length = 633
Score = 150 bits (380), Expect = 2e-37
Identities = 65/180 (36%), Positives = 99/180 (55%), Gaps = 20/180 (11%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGP-RGTHPL 1091
+GTPE YLVD H+ G+ V+LD V H K+ DGL FDGT + + P R +P
Sbjct: 216 YGTPEDFMYLVDALHQNGIGVILDWVPGHFPKDD-DGLAYFDGT-PLYEYQDPRRAENPD 273
Query: 1092 WDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEY- 1150
W + F+ + EV FL+S+ ++LDEY DG R D V++MLY + YDE
Sbjct: 274 WGALNFDLGKNEVRSFLISSALFWLDEYHLDGLRVDAVSNMLYLD----------YDEEG 323
Query: 1151 ------FGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYR 1204
+G + +A+ +L N+ ++ ++P+++ IAE+ + P PV GG GFDY+
Sbjct: 324 EWTPNKYGGRENLEAIYFLQKLNEVVYLEHPDVLMIAEESTAWPKVTGPVEVGGLGFDYK 383
Score = 44.1 bits (105), Expect = 5e-04
Identities = 35/149 (23%), Positives = 61/149 (40%), Gaps = 27/149 (18%)
Query: 792 HVVCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLD 851
VV GDFN+W + + G WE +P +G K + Q G+ ++
Sbjct: 53 SVV---GDFNDWRGNAHPLVRRESGVWEGFIPGAKEG-------QLYKYHISRQDGYQVE 102
Query: 852 RLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKW------TSSKPKKPDN--LKIYESHV 903
++ P+A Y P G A +W+ ++KW K + + IYE H+
Sbjct: 103 KIDPFAFYFEARP--GTA--SIVWDL---PEYKWKDGLWLARRKRWNALDRPISIYEVHL 155
Query: 904 G--ICTQEQKCASYEDFVRVVIPRIVKQG 930
G ++ + SY + +IP + + G
Sbjct: 156 GSWKRNEDGRPLSYRELADELIPYVKEMG 184
Score = 39.9 bits (94), Expect = 0.010
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 6/31 (19%)
Query: 117 YILTGVF------GTPEQLKYLVDECHKAGL 141
Y LTG F GTPE YLVD H+ G+
Sbjct: 204 YQLTGYFAPTSRYGTPEDFMYLVDALHQNGI 234
Score = 38.7 bits (91), Expect = 0.020
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 142 FGTPEQLKYLVDECHKAGL 160
+GTPE YLVD H+ G+
Sbjct: 216 YGTPEDFMYLVDALHQNGI 234
Score = 38.7 bits (91), Expect = 0.020
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 161 FGTPEQLKYLVDECHKAGL 179
+GTPE YLVD H+ G+
Sbjct: 216 YGTPEDFMYLVDALHQNGI 234
Score = 38.7 bits (91), Expect = 0.020
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 180 FGTPEQLKYLVDECHKAGL 198
+GTPE YLVD H+ G+
Sbjct: 216 YGTPEDFMYLVDALHQNGI 234
Score = 38.7 bits (91), Expect = 0.020
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 199 FGTPEQLKYLVDECHKAGL 217
+GTPE YLVD H+ G+
Sbjct: 216 YGTPEDFMYLVDALHQNGI 234
Score = 38.7 bits (91), Expect = 0.020
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 218 FGTPEQLKYLVDECHKAGL 236
+GTPE YLVD H+ G+
Sbjct: 216 YGTPEDFMYLVDALHQNGI 234
Score = 38.7 bits (91), Expect = 0.020
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 237 FGTPEQLKYLVDECHKAGL 255
+GTPE YLVD H+ G+
Sbjct: 216 YGTPEDFMYLVDALHQNGI 234
Score = 38.7 bits (91), Expect = 0.020
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 256 FGTPEQLKYLVDECHKAGL 274
+GTPE YLVD H+ G+
Sbjct: 216 YGTPEDFMYLVDALHQNGI 234
Score = 38.7 bits (91), Expect = 0.020
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 275 FGTPEQLKYLVDECHKAGL 293
+GTPE YLVD H+ G+
Sbjct: 216 YGTPEDFMYLVDALHQNGI 234
Score = 38.7 bits (91), Expect = 0.020
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 294 FGTPEQLKYLVDECHKAGL 312
+GTPE YLVD H+ G+
Sbjct: 216 YGTPEDFMYLVDALHQNGI 234
Score = 38.7 bits (91), Expect = 0.020
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 313 FGTPEQLKYLVDECHKAGL 331
+GTPE YLVD H+ G+
Sbjct: 216 YGTPEDFMYLVDALHQNGI 234
Score = 38.7 bits (91), Expect = 0.020
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 332 FGTPEQLKYLVDECHKAGL 350
+GTPE YLVD H+ G+
Sbjct: 216 YGTPEDFMYLVDALHQNGI 234
Score = 38.7 bits (91), Expect = 0.020
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 351 FGTPEQLKYLVDECHKAGL 369
+GTPE YLVD H+ G+
Sbjct: 216 YGTPEDFMYLVDALHQNGI 234
Score = 38.7 bits (91), Expect = 0.020
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 370 FGTPEQLKYLVDECHKAGL 388
+GTPE YLVD H+ G+
Sbjct: 216 YGTPEDFMYLVDALHQNGI 234
Score = 38.7 bits (91), Expect = 0.020
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 389 FGTPEQLKYLVDECHKAGL 407
+GTPE YLVD H+ G+
Sbjct: 216 YGTPEDFMYLVDALHQNGI 234
Score = 38.7 bits (91), Expect = 0.020
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 408 FGTPEQLKYLVDECHKAGL 426
+GTPE YLVD H+ G+
Sbjct: 216 YGTPEDFMYLVDALHQNGI 234
Score = 38.7 bits (91), Expect = 0.020
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 427 FGTPEQLKYLVDECHKAGL 445
+GTPE YLVD H+ G+
Sbjct: 216 YGTPEDFMYLVDALHQNGI 234
Score = 38.7 bits (91), Expect = 0.020
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 446 FGTPEQLKYLVDECHKAGL 464
+GTPE YLVD H+ G+
Sbjct: 216 YGTPEDFMYLVDALHQNGI 234
Score = 38.7 bits (91), Expect = 0.020
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 465 FGTPEQLKYLVDECHKAGL 483
+GTPE YLVD H+ G+
Sbjct: 216 YGTPEDFMYLVDALHQNGI 234
Score = 38.7 bits (91), Expect = 0.020
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 484 FGTPEQLKYLVDECHKAGL 502
+GTPE YLVD H+ G+
Sbjct: 216 YGTPEDFMYLVDALHQNGI 234
Score = 38.7 bits (91), Expect = 0.020
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 503 FGTPEQLKYLVDECHKAGL 521
+GTPE YLVD H+ G+
Sbjct: 216 YGTPEDFMYLVDALHQNGI 234
Score = 38.7 bits (91), Expect = 0.020
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 522 FGTPEQLKYLVDECHKAGL 540
+GTPE YLVD H+ G+
Sbjct: 216 YGTPEDFMYLVDALHQNGI 234
Score = 38.7 bits (91), Expect = 0.020
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 541 FGTPEQLKYLVDECHKAGL 559
+GTPE YLVD H+ G+
Sbjct: 216 YGTPEDFMYLVDALHQNGI 234
Score = 38.7 bits (91), Expect = 0.020
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 560 FGTPEQLKYLVDECHKAGL 578
+GTPE YLVD H+ G+
Sbjct: 216 YGTPEDFMYLVDALHQNGI 234
Score = 38.7 bits (91), Expect = 0.020
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 579 FGTPEQLKYLVDECHKAGL 597
+GTPE YLVD H+ G+
Sbjct: 216 YGTPEDFMYLVDALHQNGI 234
Score = 38.7 bits (91), Expect = 0.020
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 598 FGTPEQLKYLVDECHKAGL 616
+GTPE YLVD H+ G+
Sbjct: 216 YGTPEDFMYLVDALHQNGI 234
Score = 38.7 bits (91), Expect = 0.020
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 617 FGTPEQLKYLVDECHKAGL 635
+GTPE YLVD H+ G+
Sbjct: 216 YGTPEDFMYLVDALHQNGI 234
Score = 38.7 bits (91), Expect = 0.020
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 636 FGTPEQLKYLVDECHKAGL 654
+GTPE YLVD H+ G+
Sbjct: 216 YGTPEDFMYLVDALHQNGI 234
Score = 38.7 bits (91), Expect = 0.020
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 655 FGTPEQLKYLVDECHKAGL 673
+GTPE YLVD H+ G+
Sbjct: 216 YGTPEDFMYLVDALHQNGI 234
Score = 38.7 bits (91), Expect = 0.020
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 674 FGTPEQLKYLVDECHKAGL 692
+GTPE YLVD H+ G+
Sbjct: 216 YGTPEDFMYLVDALHQNGI 234
Score = 38.7 bits (91), Expect = 0.020
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 693 FGTPEQLKYLVDECHKAGL 711
+GTPE YLVD H+ G+
Sbjct: 216 YGTPEDFMYLVDALHQNGI 234
Score = 38.7 bits (91), Expect = 0.020
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 712 FGTPEQLKYLVDECHKAGL 730
+GTPE YLVD H+ G+
Sbjct: 216 YGTPEDFMYLVDALHQNGI 234
Score = 38.7 bits (91), Expect = 0.020
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 731 FGTPEQLKYLVDECHKAGL 749
+GTPE YLVD H+ G+
Sbjct: 216 YGTPEDFMYLVDALHQNGI 234
Score = 38.7 bits (91), Expect = 0.020
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 750 FGTPEQLKYLVDECHKAGL 768
+GTPE YLVD H+ G+
Sbjct: 216 YGTPEDFMYLVDALHQNGI 234
Score = 38.7 bits (91), Expect = 0.020
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 769 FGTPEQLKYLVDECHKAGL 787
+GTPE YLVD H+ G+
Sbjct: 216 YGTPEDFMYLVDALHQNGI 234
Score = 30.6 bits (70), Expect = 6.8
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 57 KFTTSYNKYGIHVQADNSVR--CFE-WAPSAQQLYLTG 91
+ Y G H++ + + F WAP+AQ + + G
Sbjct: 19 EHFRLYEYLGAHLEEVDGEKGTYFRVWAPNAQAVSVVG 56
>gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional.
Length = 726
Score = 136 bits (344), Expect = 2e-32
Identities = 73/178 (41%), Positives = 103/178 (57%), Gaps = 17/178 (9%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLD--GLNEFDGTQACFFHDGPR-GTH 1089
FGTP+ +Y VD CH+AG+ V+LD V +H K D GL FDGT A + H PR G H
Sbjct: 311 FGTPDDFRYFVDACHQAGIGVILDWVPAHFPK---DAHGLARFDGT-ALYEHADPREGEH 366
Query: 1090 PLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDE 1149
P W + +FNY EV FL++N ++L+E+ DG R D V SMLY ++ EG E
Sbjct: 367 PDWGTLIFNYGRNEVRNFLVANALYWLEEFHIDGLRVDAVASMLYLDYSRKEG------E 420
Query: 1150 Y----FGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDY 1203
+ +G + +A+ +L N +H+++P +TIAE+ + P RP EGG GF Y
Sbjct: 421 WIPNIYGGRENLEAIDFLRELNAVVHEEFPGALTIAEESTAWPGVTRPTEEGGLGFGY 478
Score = 46.7 bits (112), Expect = 8e-05
Identities = 28/118 (23%), Positives = 42/118 (35%), Gaps = 19/118 (16%)
Query: 794 VCAAGDFNNWNREEFAYKKL-DFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDR 852
V GDFN W+ + + G WEL +P +G K + G LL +
Sbjct: 145 VSVVGDFNGWDGRRHPMRLRGESGVWELFIPGLGEGEL-------YKFEILTADGELLLK 197
Query: 853 LSPWATYVTEPPVVGHAYEQRIWNPKP---QDKHKWTSSKPKKPDN---LKIYESHVG 904
P+A P A + + D W + K+ + IYE H+G
Sbjct: 198 ADPYAFAAEVRP--ATA--SIVADLSQYQWNDA-AWMEKRAKRNPLDAPISIYEVHLG 250
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 123 FGTPEQLKYLVDECHKAGL 141
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 142 FGTPEQLKYLVDECHKAGL 160
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 161 FGTPEQLKYLVDECHKAGL 179
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 180 FGTPEQLKYLVDECHKAGL 198
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 199 FGTPEQLKYLVDECHKAGL 217
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 218 FGTPEQLKYLVDECHKAGL 236
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 237 FGTPEQLKYLVDECHKAGL 255
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 256 FGTPEQLKYLVDECHKAGL 274
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 275 FGTPEQLKYLVDECHKAGL 293
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 294 FGTPEQLKYLVDECHKAGL 312
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 313 FGTPEQLKYLVDECHKAGL 331
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 332 FGTPEQLKYLVDECHKAGL 350
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 351 FGTPEQLKYLVDECHKAGL 369
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 370 FGTPEQLKYLVDECHKAGL 388
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 389 FGTPEQLKYLVDECHKAGL 407
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 408 FGTPEQLKYLVDECHKAGL 426
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 427 FGTPEQLKYLVDECHKAGL 445
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 446 FGTPEQLKYLVDECHKAGL 464
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 465 FGTPEQLKYLVDECHKAGL 483
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 484 FGTPEQLKYLVDECHKAGL 502
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 503 FGTPEQLKYLVDECHKAGL 521
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 522 FGTPEQLKYLVDECHKAGL 540
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 541 FGTPEQLKYLVDECHKAGL 559
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 560 FGTPEQLKYLVDECHKAGL 578
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 579 FGTPEQLKYLVDECHKAGL 597
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 598 FGTPEQLKYLVDECHKAGL 616
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 617 FGTPEQLKYLVDECHKAGL 635
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 636 FGTPEQLKYLVDECHKAGL 654
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 655 FGTPEQLKYLVDECHKAGL 673
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 674 FGTPEQLKYLVDECHKAGL 692
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 693 FGTPEQLKYLVDECHKAGL 711
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 712 FGTPEQLKYLVDECHKAGL 730
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 731 FGTPEQLKYLVDECHKAGL 749
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 750 FGTPEQLKYLVDECHKAGL 768
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
Score = 42.1 bits (100), Expect = 0.002
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 769 FGTPEQLKYLVDECHKAGL 787
FGTP+ +Y VD CH+AG+
Sbjct: 311 FGTPDDFRYFVDACHQAGI 329
>gnl|CDD|188150 TIGR01515, branching_enzym, alpha-1,4-glucan:alpha-1,4-glucan
6-glycosyltransferase. This model describes the glycogen
branching enzymes which are responsible for the transfer
of chains of approx. 7 alpha(1--4)-linked glucosyl
residues to other similar chains (in new alpha(1--6)
linkages) in the biosynthesis of glycogen. This enzyme is
a member of the broader amylase family of starch
hydrolases which fold as (beta/alpha)8 barrels, the
so-called TIM-barrel structure. All of the sequences
comprising the seed of this model have been
experimentally characterized. (For instance,). This model
encompasses both bacterial and eukaryotic species. No
archaea have this enzyme, although Aquifex aolicus does.
Two species, Bacillus thuringiensis and Clostridium
perfringens have two sequences each which are annotated
as amylases. These annotations are aparrently in error.
GP|18143720 from C. perfringens, for instance, contains
the note "674 aa, similar to gp:A14658_1 amylase
(1,4-alpha-glucan branching enzyme (EC 2.4.1.18) ) from
Bacillus thuringiensis (648 aa); 51.1% identity in 632 aa
overlap." A branching enzyme from Porphyromonas
gingivales, OMNI|PG1793, appears to be more closely
related to the eukaryotic species (across a deep
phylogenetic split) and may represent an instance of
lateral transfer from this species' host. A sequence from
Arabidopsis thaliana, GP|9294564, scores just above
trusted, but appears either to contain corrupt sequence
or, more likely, to be a pseudogene as some of the
conserved catalytic residues common to the alpha amylase
family are not conserved here [Energy metabolism,
Biosynthesis and degradation of polysaccharides].
Length = 618
Score = 129 bits (327), Expect = 7e-31
Identities = 65/172 (37%), Positives = 94/172 (54%), Gaps = 3/172 (1%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092
FGTP+ Y VD CH+AG+ V+LD V H K+ GL EFDGT D G H W
Sbjct: 207 FGTPDDFMYFVDACHQAGIGVILDWVPGHFPKDDH-GLAEFDGTPLYEHKDPRDGEHWDW 265
Query: 1093 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 1152
+ +F+Y EV FL++N ++ + Y DG R D V SMLY ++ EG G
Sbjct: 266 GTLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAVASMLYLDYSRDEG--EWSPNEDG 323
Query: 1153 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYR 1204
+ +A+ +L N+ +++ +P ++TIAE+ + P RP EGG GF Y+
Sbjct: 324 GRENLEAVEFLRKLNQTVYEAFPGVVTIAEESTEWPGVTRPTDEGGLGFHYK 375
Score = 42.9 bits (101), Expect = 0.001
Identities = 39/156 (25%), Positives = 62/156 (39%), Gaps = 23/156 (14%)
Query: 794 VCAAGDFNNWNREEFAYKKL-DFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDR 852
V AGDFN W+ E ++ D G WEL +P +G K + +G + +
Sbjct: 42 VRVAGDFNYWDGREHPMRRRNDNGIWELFIPGIGEG-------ELYKYEIVTNNGEIRLK 94
Query: 853 LSPWATYVTEPP-----VVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVG--I 905
P+A Y P V W + + + + +KP + IYE H+G
Sbjct: 95 ADPYAFYAEVRPNTASLVYNLEGYS--WQDQKWQEKRKAKTPYEKP--VSIYELHLGSWR 150
Query: 906 CTQEQKCASYEDFVRVVIPRIVKQGMAIPDKWIELL 941
+ + SY + +IP + + G IELL
Sbjct: 151 KHSDGRHLSYRELADQLIPYVKELGFT----HIELL 182
Score = 36.3 bits (84), Expect = 0.10
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 117 YILTGVFGTPEQLKYLVDECHKAGL 141
Y T FGTP+ Y VD CH+AG+
Sbjct: 201 YAPTSRFGTPDDFMYFVDACHQAGI 225
Score = 35.2 bits (81), Expect = 0.26
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 142 FGTPEQLKYLVDECHKAGL 160
FGTP+ Y VD CH+AG+
Sbjct: 207 FGTPDDFMYFVDACHQAGI 225
Score = 35.2 bits (81), Expect = 0.26
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 161 FGTPEQLKYLVDECHKAGL 179
FGTP+ Y VD CH+AG+
Sbjct: 207 FGTPDDFMYFVDACHQAGI 225
Score = 35.2 bits (81), Expect = 0.26
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 180 FGTPEQLKYLVDECHKAGL 198
FGTP+ Y VD CH+AG+
Sbjct: 207 FGTPDDFMYFVDACHQAGI 225
Score = 35.2 bits (81), Expect = 0.26
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 199 FGTPEQLKYLVDECHKAGL 217
FGTP+ Y VD CH+AG+
Sbjct: 207 FGTPDDFMYFVDACHQAGI 225
Score = 35.2 bits (81), Expect = 0.26
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 218 FGTPEQLKYLVDECHKAGL 236
FGTP+ Y VD CH+AG+
Sbjct: 207 FGTPDDFMYFVDACHQAGI 225
Score = 35.2 bits (81), Expect = 0.26
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 237 FGTPEQLKYLVDECHKAGL 255
FGTP+ Y VD CH+AG+
Sbjct: 207 FGTPDDFMYFVDACHQAGI 225
Score = 35.2 bits (81), Expect = 0.26
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 256 FGTPEQLKYLVDECHKAGL 274
FGTP+ Y VD CH+AG+
Sbjct: 207 FGTPDDFMYFVDACHQAGI 225
Score = 35.2 bits (81), Expect = 0.26
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 275 FGTPEQLKYLVDECHKAGL 293
FGTP+ Y VD CH+AG+
Sbjct: 207 FGTPDDFMYFVDACHQAGI 225
Score = 35.2 bits (81), Expect = 0.26
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 294 FGTPEQLKYLVDECHKAGL 312
FGTP+ Y VD CH+AG+
Sbjct: 207 FGTPDDFMYFVDACHQAGI 225
Score = 35.2 bits (81), Expect = 0.26
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 313 FGTPEQLKYLVDECHKAGL 331
FGTP+ Y VD CH+AG+
Sbjct: 207 FGTPDDFMYFVDACHQAGI 225
Score = 35.2 bits (81), Expect = 0.26
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 332 FGTPEQLKYLVDECHKAGL 350
FGTP+ Y VD CH+AG+
Sbjct: 207 FGTPDDFMYFVDACHQAGI 225
Score = 35.2 bits (81), Expect = 0.26
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 351 FGTPEQLKYLVDECHKAGL 369
FGTP+ Y VD CH+AG+
Sbjct: 207 FGTPDDFMYFVDACHQAGI 225
Score = 35.2 bits (81), Expect = 0.26
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 370 FGTPEQLKYLVDECHKAGL 388
FGTP+ Y VD CH+AG+
Sbjct: 207 FGTPDDFMYFVDACHQAGI 225
Score = 35.2 bits (81), Expect = 0.26
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 389 FGTPEQLKYLVDECHKAGL 407
FGTP+ Y VD CH+AG+
Sbjct: 207 FGTPDDFMYFVDACHQAGI 225
Score = 35.2 bits (81), Expect = 0.26
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 408 FGTPEQLKYLVDECHKAGL 426
FGTP+ Y VD CH+AG+
Sbjct: 207 FGTPDDFMYFVDACHQAGI 225
Score = 35.2 bits (81), Expect = 0.26
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 427 FGTPEQLKYLVDECHKAGL 445
FGTP+ Y VD CH+AG+
Sbjct: 207 FGTPDDFMYFVDACHQAGI 225
Score = 35.2 bits (81), Expect = 0.26
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 446 FGTPEQLKYLVDECHKAGL 464
FGTP+ Y VD CH+AG+
Sbjct: 207 FGTPDDFMYFVDACHQAGI 225
Score = 35.2 bits (81), Expect = 0.26
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 465 FGTPEQLKYLVDECHKAGL 483
FGTP+ Y VD CH+AG+
Sbjct: 207 FGTPDDFMYFVDACHQAGI 225
Score = 35.2 bits (81), Expect = 0.26
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 484 FGTPEQLKYLVDECHKAGL 502
FGTP+ Y VD CH+AG+
Sbjct: 207 FGTPDDFMYFVDACHQAGI 225
Score = 35.2 bits (81), Expect = 0.26
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 503 FGTPEQLKYLVDECHKAGL 521
FGTP+ Y VD CH+AG+
Sbjct: 207 FGTPDDFMYFVDACHQAGI 225
Score = 35.2 bits (81), Expect = 0.26
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 522 FGTPEQLKYLVDECHKAGL 540
FGTP+ Y VD CH+AG+
Sbjct: 207 FGTPDDFMYFVDACHQAGI 225
Score = 35.2 bits (81), Expect = 0.26
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 541 FGTPEQLKYLVDECHKAGL 559
FGTP+ Y VD CH+AG+
Sbjct: 207 FGTPDDFMYFVDACHQAGI 225
Score = 35.2 bits (81), Expect = 0.26
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 560 FGTPEQLKYLVDECHKAGL 578
FGTP+ Y VD CH+AG+
Sbjct: 207 FGTPDDFMYFVDACHQAGI 225
Score = 35.2 bits (81), Expect = 0.26
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 579 FGTPEQLKYLVDECHKAGL 597
FGTP+ Y VD CH+AG+
Sbjct: 207 FGTPDDFMYFVDACHQAGI 225
Score = 35.2 bits (81), Expect = 0.26
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 598 FGTPEQLKYLVDECHKAGL 616
FGTP+ Y VD CH+AG+
Sbjct: 207 FGTPDDFMYFVDACHQAGI 225
Score = 35.2 bits (81), Expect = 0.26
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 617 FGTPEQLKYLVDECHKAGL 635
FGTP+ Y VD CH+AG+
Sbjct: 207 FGTPDDFMYFVDACHQAGI 225
Score = 35.2 bits (81), Expect = 0.26
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 636 FGTPEQLKYLVDECHKAGL 654
FGTP+ Y VD CH+AG+
Sbjct: 207 FGTPDDFMYFVDACHQAGI 225
Score = 35.2 bits (81), Expect = 0.26
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 655 FGTPEQLKYLVDECHKAGL 673
FGTP+ Y VD CH+AG+
Sbjct: 207 FGTPDDFMYFVDACHQAGI 225
Score = 35.2 bits (81), Expect = 0.26
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 674 FGTPEQLKYLVDECHKAGL 692
FGTP+ Y VD CH+AG+
Sbjct: 207 FGTPDDFMYFVDACHQAGI 225
Score = 35.2 bits (81), Expect = 0.26
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 693 FGTPEQLKYLVDECHKAGL 711
FGTP+ Y VD CH+AG+
Sbjct: 207 FGTPDDFMYFVDACHQAGI 225
Score = 35.2 bits (81), Expect = 0.26
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 712 FGTPEQLKYLVDECHKAGL 730
FGTP+ Y VD CH+AG+
Sbjct: 207 FGTPDDFMYFVDACHQAGI 225
Score = 35.2 bits (81), Expect = 0.26
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 731 FGTPEQLKYLVDECHKAGL 749
FGTP+ Y VD CH+AG+
Sbjct: 207 FGTPDDFMYFVDACHQAGI 225
Score = 35.2 bits (81), Expect = 0.26
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 750 FGTPEQLKYLVDECHKAGL 768
FGTP+ Y VD CH+AG+
Sbjct: 207 FGTPDDFMYFVDACHQAGI 225
Score = 35.2 bits (81), Expect = 0.26
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 769 FGTPEQLKYLVDECHKAGL 787
FGTP+ Y VD CH+AG+
Sbjct: 207 FGTPDDFMYFVDACHQAGI 225
>gnl|CDD|199884 cd02854, E_set_GBE_euk_N, N-terminal Early set domain associated
with the catalytic domain of eukaryotic glycogen
branching enzyme (also called 1,4 alpha glucan branching
enzyme). This subfamily is composed of predominantly
eukaryotic 1,4 alpha glucan branching enzymes, also
called glycogen branching enzymes or starch binding
enzymes in plants. E or "early" set domains are
associated with the catalytic domain of the 1,4 alpha
glucan branching enzymes at the N-terminal end. These
enzymes catalyze the formation of alpha-1,6 branch
points in either glycogen or starch by cleavage of the
alpha-1,4 glucosidic linkage, yielding a non-reducing
end oligosaccharide chain, as well as the subsequent
attachment of short glucosyl chains to the alpha-1,6
position. Starch is composed of two types of glucan
polymer: amylose and amylopectin. Amylose is mainly
composed of linear chains of alpha-1,4 linked glucose
residues and amylopectin consists of shorter alpha-1,4
linked chains connected by alpha-1,6 linkages.
Amylopectin is synthesized from linear chains by starch
branching enzyme. The N-terminal domains of the
branching enzyme proteins may be related to the
immunoglobulin and/or fibronectin type III
superfamilies. These domains are associated with
different types of catalytic domains at either the
N-terminal or C-terminal end and may be involved in
homodimeric/tetrameric/dodecameric interactions. Members
of this family include members of the alpha amylase
family, sialidase, galactose oxidase, cellulase,
cellulose, hyaluronate lyase, chitobiase, and chitinase,
among others.
Length = 95
Score = 115 bits (290), Expect = 2e-30
Identities = 36/78 (46%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 798 GDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPWA 857
GDFNNWNRE K+ +FGKWEL LPP +GS + H S+VKL V G LDR+ WA
Sbjct: 20 GDFNNWNRESHPLKRDEFGKWELFLPPK-EGSPAIPHGSKVKLHVETWDGGRLDRIPAWA 78
Query: 858 TYVTEPPVVGHAYEQRIW 875
V + P ++ W
Sbjct: 79 KRVVQDP-ETKIFDGVFW 95
Score = 36.4 bits (85), Expect = 0.009
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 72 DNSVRCFEWAPSAQQLYLTG 91
D EWAP+A+ +YL G
Sbjct: 1 DGGWVYREWAPNAKAVYLIG 20
>gnl|CDD|139075 PRK12568, PRK12568, glycogen branching enzyme; Provisional.
Length = 730
Score = 113 bits (283), Expect = 2e-25
Identities = 63/177 (35%), Positives = 99/177 (55%), Gaps = 15/177 (8%)
Query: 1034 GTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPR-GTHPLW 1092
G+P+ VD CH+AG+ V+LD V +H + GL +FDG A + H PR G H W
Sbjct: 316 GSPDGFAQFVDACHRAGIGVILDWVSAHFPDDA-HGLAQFDGA-ALYEHADPREGMHRDW 373
Query: 1093 DSRLFNYSEIEVLRFLL-SNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYF 1151
++ ++NY EV +LL S L W ++ Y DG R D V SMLY ++G EG E+
Sbjct: 374 NTLIYNYGRPEVTAYLLGSALEW-IEHYHLDGLRVDAVASMLYRDYGRAEG------EWV 426
Query: 1152 ----GLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYR 1204
G + +A+ +L N+ + ++P ++TIAE+ + P P+++GG GF ++
Sbjct: 427 PNAHGGRENLEAVAFLRQLNREIASQFPGVLTIAEESTAWPGVTAPISDGGLGFTHK 483
Score = 34.9 bits (80), Expect = 0.33
Identities = 28/115 (24%), Positives = 40/115 (34%), Gaps = 15/115 (13%)
Query: 794 VCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRL 853
V GDFN W+ ++ G WEL LP G ++ K + G +L +
Sbjct: 152 VAVVGDFNGWDVRRHPMRQRIGGFWELFLPRVEAG-------ARYKYAITAADGRVLLKA 204
Query: 854 SPWATYVTEPPVVGHAYEQRIWNPKPQDKH--KWTSSKPKK--PDNLKIYESHVG 904
P A PP A + + W + + P L IYE H
Sbjct: 205 DPVARQTELPP----ATASVVPSAAAFAWTDAAWMARRDPAAVPAPLSIYEVHAA 255
>gnl|CDD|237794 PRK14705, PRK14705, glycogen branching enzyme; Provisional.
Length = 1224
Score = 113 bits (283), Expect = 4e-25
Identities = 62/170 (36%), Positives = 94/170 (55%), Gaps = 5/170 (2%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPR-GTHPL 1091
FG P++ ++LVD H+AG+ VLLD V +H K+ L +FDG Q + H P G HP
Sbjct: 811 FGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDSW-ALAQFDG-QPLYEHADPALGEHPD 868
Query: 1092 WDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYF 1151
W + +F++ EV FL++N ++LDE+ DG R D V SMLY ++ EG F
Sbjct: 869 WGTLIFDFGRTEVRNFLVANALYWLDEFHIDGLRVDAVASMLYLDYSREEG--QWRPNRF 926
Query: 1152 GLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGF 1201
G + +A+ +L N ++ +P + IAE+ + P P + GG GF
Sbjct: 927 GGRENLEAISFLQEVNATVYKTHPGAVMIAEESTAFPGVTAPTSHGGLGF 976
Score = 42.7 bits (100), Expect = 0.002
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 16/112 (14%)
Query: 798 GDFNNWNREEFAYKKL-DFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSPW 856
GDFN W+ E + + L G WEL +P G+C K + + G +++ P
Sbjct: 656 GDFNGWDGREHSMRSLGSSGVWELFIPGVVAGAC-------YKFEILTKAGQWVEKADPL 708
Query: 857 ATYVTEPPVVGHAYEQRIWNPKPQDK-HKWTSSKPKK-PDN--LKIYESHVG 904
A PP+ R+ K +W S++ ++ P N + +YE H+G
Sbjct: 709 AFGTEVPPLTA----SRVVEASYAFKDAEWMSARAERDPHNSPMSVYEVHLG 756
>gnl|CDD|200464 cd11325, AmyAc_GTHase, Alpha amylase catalytic domain found in
Glycosyltrehalose trehalohydrolase (also called
Maltooligosyl trehalose Trehalohydrolase).
Glycosyltrehalose trehalohydrolase (GTHase) was
discovered as part of a coupled system for the production
of trehalose from soluble starch. In the first half of
the reaction, glycosyltrehalose synthase (GTSase), an
intramolecular glycosyl transferase, converts the
glycosidic bond between the last two glucose residues of
amylose from an alpha-1,4 bond to an alpha-1,1 bond,
making a non-reducing glycosyl trehaloside. In the second
half of the reaction, GTHase cleaves the alpha-1,4
glycosidic bond adjacent to the trehalose moiety to
release trehalose and malto-oligosaccharide. Like
isoamylase and other glycosidases that recognize branched
oligosaccharides, GTHase contains an N-terminal extension
and does not have the conserved calcium ion present in
other alpha amylase family enzymes. The Alpha-amylase
family comprises the largest family of glycoside
hydrolases (GH), with the majority of enzymes acting on
starch, glycogen, and related oligo- and polysaccharides.
These proteins catalyze the transformation of alpha-1,4
and alpha-1,6 glucosidic linkages with retention of the
anomeric center. The protein is described as having 3
domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a
loop between the beta 3 strand and alpha 3 helix of A; C
is the C-terminal extension characterized by a Greek key.
The majority of the enzymes have an active site cleft
found between domains A and B where a triad of catalytic
residues (Asp, Glu and Asp) performs catalysis. Other
members of this family have lost the catalytic activity
as in the case of the human 4F2hc, or only have 2
residues that serve as the catalytic nucleophile and the
acid/base, such as Thermus A4 beta-galactosidase with 2
Glu residues (GH42) and human alpha-galactosidase with 2
Asp residues (GH31). The family members are quite
extensive and include: alpha amylase,
maltosyltransferase, cyclodextrin glycotransferase,
maltogenic amylase, neopullulanase, isoamylase,
1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Glycosyltrehalose Trehalohydrolase Maltooligosyltrehalose
Trehalohydrolase.
Length = 436
Score = 102 bits (256), Expect = 1e-22
Identities = 55/175 (31%), Positives = 74/175 (42%), Gaps = 36/175 (20%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG--LNEFDGTQACFFHDGPRGTHP 1090
+G P+ LK LVD H+ GL V+LDVV++H DG L +F G +F D + P
Sbjct: 100 YGGPDDLKRLVDAAHRRGLAVILDVVYNHFGP---DGNYLWQFAGP---YFTD--DYSTP 151
Query: 1091 LW-DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHN--HGCGEGFSGHY 1147
W D+ F+ EV +F + N ++L EY DG R D V ++ + H E
Sbjct: 152 -WGDAINFDGPGDEVRQFFIDNALYWLREYHVDGLRLDAVHAIRDDSGWHFLQE------ 204
Query: 1148 DEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFD 1202
L + A IAED P RP GG GFD
Sbjct: 205 -----LAREVRA-----------AAAGRPAHLIAEDDRNDPRLVRPPELGGAGFD 243
Score = 41.0 bits (97), Expect = 0.004
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 769 FGTPEQLKYLVDECHKAGLLCFMHVVC--AAGDFN 801
+G P+ LK LVD H+ GL + VV D N
Sbjct: 100 YGGPDDLKRLVDAAHRRGLAVILDVVYNHFGPDGN 134
Score = 38.7 bits (91), Expect = 0.019
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 123 FGTPEQLKYLVDECHKAGL 141
+G P+ LK LVD H+ GL
Sbjct: 100 YGGPDDLKRLVDAAHRRGL 118
Score = 38.7 bits (91), Expect = 0.019
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 142 FGTPEQLKYLVDECHKAGL 160
+G P+ LK LVD H+ GL
Sbjct: 100 YGGPDDLKRLVDAAHRRGL 118
Score = 38.7 bits (91), Expect = 0.019
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 161 FGTPEQLKYLVDECHKAGL 179
+G P+ LK LVD H+ GL
Sbjct: 100 YGGPDDLKRLVDAAHRRGL 118
Score = 38.7 bits (91), Expect = 0.019
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 180 FGTPEQLKYLVDECHKAGL 198
+G P+ LK LVD H+ GL
Sbjct: 100 YGGPDDLKRLVDAAHRRGL 118
Score = 38.7 bits (91), Expect = 0.019
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 199 FGTPEQLKYLVDECHKAGL 217
+G P+ LK LVD H+ GL
Sbjct: 100 YGGPDDLKRLVDAAHRRGL 118
Score = 38.7 bits (91), Expect = 0.019
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 218 FGTPEQLKYLVDECHKAGL 236
+G P+ LK LVD H+ GL
Sbjct: 100 YGGPDDLKRLVDAAHRRGL 118
Score = 38.7 bits (91), Expect = 0.019
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 237 FGTPEQLKYLVDECHKAGL 255
+G P+ LK LVD H+ GL
Sbjct: 100 YGGPDDLKRLVDAAHRRGL 118
Score = 38.7 bits (91), Expect = 0.019
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 256 FGTPEQLKYLVDECHKAGL 274
+G P+ LK LVD H+ GL
Sbjct: 100 YGGPDDLKRLVDAAHRRGL 118
Score = 38.7 bits (91), Expect = 0.019
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 275 FGTPEQLKYLVDECHKAGL 293
+G P+ LK LVD H+ GL
Sbjct: 100 YGGPDDLKRLVDAAHRRGL 118
Score = 38.7 bits (91), Expect = 0.019
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 294 FGTPEQLKYLVDECHKAGL 312
+G P+ LK LVD H+ GL
Sbjct: 100 YGGPDDLKRLVDAAHRRGL 118
Score = 38.7 bits (91), Expect = 0.019
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 313 FGTPEQLKYLVDECHKAGL 331
+G P+ LK LVD H+ GL
Sbjct: 100 YGGPDDLKRLVDAAHRRGL 118
Score = 38.7 bits (91), Expect = 0.019
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 332 FGTPEQLKYLVDECHKAGL 350
+G P+ LK LVD H+ GL
Sbjct: 100 YGGPDDLKRLVDAAHRRGL 118
Score = 38.7 bits (91), Expect = 0.019
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 351 FGTPEQLKYLVDECHKAGL 369
+G P+ LK LVD H+ GL
Sbjct: 100 YGGPDDLKRLVDAAHRRGL 118
Score = 38.7 bits (91), Expect = 0.019
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 370 FGTPEQLKYLVDECHKAGL 388
+G P+ LK LVD H+ GL
Sbjct: 100 YGGPDDLKRLVDAAHRRGL 118
Score = 38.7 bits (91), Expect = 0.019
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 389 FGTPEQLKYLVDECHKAGL 407
+G P+ LK LVD H+ GL
Sbjct: 100 YGGPDDLKRLVDAAHRRGL 118
Score = 38.7 bits (91), Expect = 0.019
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 408 FGTPEQLKYLVDECHKAGL 426
+G P+ LK LVD H+ GL
Sbjct: 100 YGGPDDLKRLVDAAHRRGL 118
Score = 38.7 bits (91), Expect = 0.019
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 427 FGTPEQLKYLVDECHKAGL 445
+G P+ LK LVD H+ GL
Sbjct: 100 YGGPDDLKRLVDAAHRRGL 118
Score = 38.7 bits (91), Expect = 0.019
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 446 FGTPEQLKYLVDECHKAGL 464
+G P+ LK LVD H+ GL
Sbjct: 100 YGGPDDLKRLVDAAHRRGL 118
Score = 38.7 bits (91), Expect = 0.019
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 465 FGTPEQLKYLVDECHKAGL 483
+G P+ LK LVD H+ GL
Sbjct: 100 YGGPDDLKRLVDAAHRRGL 118
Score = 38.7 bits (91), Expect = 0.019
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 484 FGTPEQLKYLVDECHKAGL 502
+G P+ LK LVD H+ GL
Sbjct: 100 YGGPDDLKRLVDAAHRRGL 118
Score = 38.7 bits (91), Expect = 0.019
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 503 FGTPEQLKYLVDECHKAGL 521
+G P+ LK LVD H+ GL
Sbjct: 100 YGGPDDLKRLVDAAHRRGL 118
Score = 38.7 bits (91), Expect = 0.019
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 522 FGTPEQLKYLVDECHKAGL 540
+G P+ LK LVD H+ GL
Sbjct: 100 YGGPDDLKRLVDAAHRRGL 118
Score = 38.7 bits (91), Expect = 0.019
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 541 FGTPEQLKYLVDECHKAGL 559
+G P+ LK LVD H+ GL
Sbjct: 100 YGGPDDLKRLVDAAHRRGL 118
Score = 38.7 bits (91), Expect = 0.019
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 560 FGTPEQLKYLVDECHKAGL 578
+G P+ LK LVD H+ GL
Sbjct: 100 YGGPDDLKRLVDAAHRRGL 118
Score = 38.7 bits (91), Expect = 0.019
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 579 FGTPEQLKYLVDECHKAGL 597
+G P+ LK LVD H+ GL
Sbjct: 100 YGGPDDLKRLVDAAHRRGL 118
Score = 38.7 bits (91), Expect = 0.019
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 598 FGTPEQLKYLVDECHKAGL 616
+G P+ LK LVD H+ GL
Sbjct: 100 YGGPDDLKRLVDAAHRRGL 118
Score = 38.7 bits (91), Expect = 0.019
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 617 FGTPEQLKYLVDECHKAGL 635
+G P+ LK LVD H+ GL
Sbjct: 100 YGGPDDLKRLVDAAHRRGL 118
Score = 38.7 bits (91), Expect = 0.019
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 636 FGTPEQLKYLVDECHKAGL 654
+G P+ LK LVD H+ GL
Sbjct: 100 YGGPDDLKRLVDAAHRRGL 118
Score = 38.7 bits (91), Expect = 0.019
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 655 FGTPEQLKYLVDECHKAGL 673
+G P+ LK LVD H+ GL
Sbjct: 100 YGGPDDLKRLVDAAHRRGL 118
Score = 38.7 bits (91), Expect = 0.019
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 674 FGTPEQLKYLVDECHKAGL 692
+G P+ LK LVD H+ GL
Sbjct: 100 YGGPDDLKRLVDAAHRRGL 118
Score = 38.7 bits (91), Expect = 0.019
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 693 FGTPEQLKYLVDECHKAGL 711
+G P+ LK LVD H+ GL
Sbjct: 100 YGGPDDLKRLVDAAHRRGL 118
Score = 38.7 bits (91), Expect = 0.019
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 712 FGTPEQLKYLVDECHKAGL 730
+G P+ LK LVD H+ GL
Sbjct: 100 YGGPDDLKRLVDAAHRRGL 118
Score = 38.7 bits (91), Expect = 0.019
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 731 FGTPEQLKYLVDECHKAGL 749
+G P+ LK LVD H+ GL
Sbjct: 100 YGGPDDLKRLVDAAHRRGL 118
Score = 38.7 bits (91), Expect = 0.019
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 750 FGTPEQLKYLVDECHKAGL 768
+G P+ LK LVD H+ GL
Sbjct: 100 YGGPDDLKRLVDAAHRRGL 118
>gnl|CDD|237795 PRK14706, PRK14706, glycogen branching enzyme; Provisional.
Length = 639
Score = 93.5 bits (232), Expect = 2e-19
Identities = 60/173 (34%), Positives = 86/173 (49%), Gaps = 8/173 (4%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092
GTPE KYLV+ H G+ V+LD V H + GL FDG + D +G H W
Sbjct: 213 LGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDES-GLAHFDGGPLYEYADPRKGYHYDW 271
Query: 1093 DSRLFNYSEIEVLRFLL-SNLRWYLDEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYF 1151
++ +F+Y EV+ FL+ S L+W L ++ DG R D V SMLY + E +
Sbjct: 272 NTYIFDYGRNEVVMFLIGSALKW-LQDFHVDGLRVDAVASMLYLDFSRTEWVPNIH---- 326
Query: 1152 GLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYR 1204
G + +A+ +L N+ H P + IAE+ + P P G GFDY+
Sbjct: 327 GGRENLEAIAFLKRLNEVTHHMAPGCMMIAEESTSFPGVTVPTPY-GLGFDYK 378
Score = 48.1 bits (114), Expect = 3e-05
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 21/117 (17%)
Query: 794 VCAAGDFNNWNREEFAYKKLDFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRL 853
V GDFN+WN + ++LDFG W +P G + K V G +D++
Sbjct: 52 VSVVGDFNDWNGFDHPMQRLDFGFWGAFVPGARPG-------QRYKFRVTGAAGQTVDKM 104
Query: 854 SPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSK------PKKPDNLKIYESHVG 904
P+ ++ P IW +D+ +WT ++ + IYE HVG
Sbjct: 105 DPYGSFFEVRP----NTASIIW----EDRFEWTDTRWMSSRTAGFDQPISIYEVHVG 153
>gnl|CDD|233850 TIGR02402, trehalose_TreZ, malto-oligosyltrehalose trehalohydrolase.
Members of this family are the trehalose biosynthetic
enzyme malto-oligosyltrehalose trehalohydrolase, formally
known as 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose
trehalohydrolase (EC 3.2.1.141). It is the TreZ protein
of the TreYZ pathway for trehalose biosynthesis, and
alternative to the OtsAB system [Energy metabolism,
Biosynthesis and degradation of polysaccharides].
Length = 544
Score = 73.5 bits (181), Expect = 4e-13
Identities = 38/105 (36%), Positives = 52/105 (49%), Gaps = 16/105 (15%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSH--ASKNVLDGLNEFDGTQACFFHDGPRGTHP 1090
+G P+ LK LVD H GL VLLDVV++H N L A +F D T P
Sbjct: 156 YGGPDDLKALVDAAHGLGLGVLLDVVYNHFGPEGNYLPRF-------APYFTDR-YST-P 206
Query: 1091 LWDSRLFNYSE---IEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM 1132
+ N+ EV R+++ N ++L EY FDG R D V ++
Sbjct: 207 WGAA--INFDGPGSDEVRRYIIDNALYWLREYHFDGLRLDAVHAI 249
Score = 38.1 bits (89), Expect = 0.035
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 769 FGTPEQLKYLVDECHKAGLLCFMHVV 794
+G P+ LK LVD H GL + VV
Sbjct: 156 YGGPDDLKALVDAAHGLGLGVLLDVV 181
Score = 35.0 bits (81), Expect = 0.30
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 123 FGTPEQLKYLVDECHKAGL 141
+G P+ LK LVD H GL
Sbjct: 156 YGGPDDLKALVDAAHGLGL 174
Score = 35.0 bits (81), Expect = 0.30
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 142 FGTPEQLKYLVDECHKAGL 160
+G P+ LK LVD H GL
Sbjct: 156 YGGPDDLKALVDAAHGLGL 174
Score = 35.0 bits (81), Expect = 0.30
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 161 FGTPEQLKYLVDECHKAGL 179
+G P+ LK LVD H GL
Sbjct: 156 YGGPDDLKALVDAAHGLGL 174
Score = 35.0 bits (81), Expect = 0.30
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 180 FGTPEQLKYLVDECHKAGL 198
+G P+ LK LVD H GL
Sbjct: 156 YGGPDDLKALVDAAHGLGL 174
Score = 35.0 bits (81), Expect = 0.30
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 199 FGTPEQLKYLVDECHKAGL 217
+G P+ LK LVD H GL
Sbjct: 156 YGGPDDLKALVDAAHGLGL 174
Score = 35.0 bits (81), Expect = 0.30
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 218 FGTPEQLKYLVDECHKAGL 236
+G P+ LK LVD H GL
Sbjct: 156 YGGPDDLKALVDAAHGLGL 174
Score = 35.0 bits (81), Expect = 0.30
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 237 FGTPEQLKYLVDECHKAGL 255
+G P+ LK LVD H GL
Sbjct: 156 YGGPDDLKALVDAAHGLGL 174
Score = 35.0 bits (81), Expect = 0.30
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 256 FGTPEQLKYLVDECHKAGL 274
+G P+ LK LVD H GL
Sbjct: 156 YGGPDDLKALVDAAHGLGL 174
Score = 35.0 bits (81), Expect = 0.30
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 275 FGTPEQLKYLVDECHKAGL 293
+G P+ LK LVD H GL
Sbjct: 156 YGGPDDLKALVDAAHGLGL 174
Score = 35.0 bits (81), Expect = 0.30
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 294 FGTPEQLKYLVDECHKAGL 312
+G P+ LK LVD H GL
Sbjct: 156 YGGPDDLKALVDAAHGLGL 174
Score = 35.0 bits (81), Expect = 0.30
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 313 FGTPEQLKYLVDECHKAGL 331
+G P+ LK LVD H GL
Sbjct: 156 YGGPDDLKALVDAAHGLGL 174
Score = 35.0 bits (81), Expect = 0.30
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 332 FGTPEQLKYLVDECHKAGL 350
+G P+ LK LVD H GL
Sbjct: 156 YGGPDDLKALVDAAHGLGL 174
Score = 35.0 bits (81), Expect = 0.30
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 351 FGTPEQLKYLVDECHKAGL 369
+G P+ LK LVD H GL
Sbjct: 156 YGGPDDLKALVDAAHGLGL 174
Score = 35.0 bits (81), Expect = 0.30
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 370 FGTPEQLKYLVDECHKAGL 388
+G P+ LK LVD H GL
Sbjct: 156 YGGPDDLKALVDAAHGLGL 174
Score = 35.0 bits (81), Expect = 0.30
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 389 FGTPEQLKYLVDECHKAGL 407
+G P+ LK LVD H GL
Sbjct: 156 YGGPDDLKALVDAAHGLGL 174
Score = 35.0 bits (81), Expect = 0.30
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 408 FGTPEQLKYLVDECHKAGL 426
+G P+ LK LVD H GL
Sbjct: 156 YGGPDDLKALVDAAHGLGL 174
Score = 35.0 bits (81), Expect = 0.30
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 427 FGTPEQLKYLVDECHKAGL 445
+G P+ LK LVD H GL
Sbjct: 156 YGGPDDLKALVDAAHGLGL 174
Score = 35.0 bits (81), Expect = 0.30
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 446 FGTPEQLKYLVDECHKAGL 464
+G P+ LK LVD H GL
Sbjct: 156 YGGPDDLKALVDAAHGLGL 174
Score = 35.0 bits (81), Expect = 0.30
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 465 FGTPEQLKYLVDECHKAGL 483
+G P+ LK LVD H GL
Sbjct: 156 YGGPDDLKALVDAAHGLGL 174
Score = 35.0 bits (81), Expect = 0.30
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 484 FGTPEQLKYLVDECHKAGL 502
+G P+ LK LVD H GL
Sbjct: 156 YGGPDDLKALVDAAHGLGL 174
Score = 35.0 bits (81), Expect = 0.30
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 503 FGTPEQLKYLVDECHKAGL 521
+G P+ LK LVD H GL
Sbjct: 156 YGGPDDLKALVDAAHGLGL 174
Score = 35.0 bits (81), Expect = 0.30
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 522 FGTPEQLKYLVDECHKAGL 540
+G P+ LK LVD H GL
Sbjct: 156 YGGPDDLKALVDAAHGLGL 174
Score = 35.0 bits (81), Expect = 0.30
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 541 FGTPEQLKYLVDECHKAGL 559
+G P+ LK LVD H GL
Sbjct: 156 YGGPDDLKALVDAAHGLGL 174
Score = 35.0 bits (81), Expect = 0.30
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 560 FGTPEQLKYLVDECHKAGL 578
+G P+ LK LVD H GL
Sbjct: 156 YGGPDDLKALVDAAHGLGL 174
Score = 35.0 bits (81), Expect = 0.30
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 579 FGTPEQLKYLVDECHKAGL 597
+G P+ LK LVD H GL
Sbjct: 156 YGGPDDLKALVDAAHGLGL 174
Score = 35.0 bits (81), Expect = 0.30
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 598 FGTPEQLKYLVDECHKAGL 616
+G P+ LK LVD H GL
Sbjct: 156 YGGPDDLKALVDAAHGLGL 174
Score = 35.0 bits (81), Expect = 0.30
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 617 FGTPEQLKYLVDECHKAGL 635
+G P+ LK LVD H GL
Sbjct: 156 YGGPDDLKALVDAAHGLGL 174
Score = 35.0 bits (81), Expect = 0.30
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 636 FGTPEQLKYLVDECHKAGL 654
+G P+ LK LVD H GL
Sbjct: 156 YGGPDDLKALVDAAHGLGL 174
Score = 35.0 bits (81), Expect = 0.30
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 655 FGTPEQLKYLVDECHKAGL 673
+G P+ LK LVD H GL
Sbjct: 156 YGGPDDLKALVDAAHGLGL 174
Score = 35.0 bits (81), Expect = 0.30
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 674 FGTPEQLKYLVDECHKAGL 692
+G P+ LK LVD H GL
Sbjct: 156 YGGPDDLKALVDAAHGLGL 174
Score = 35.0 bits (81), Expect = 0.30
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 693 FGTPEQLKYLVDECHKAGL 711
+G P+ LK LVD H GL
Sbjct: 156 YGGPDDLKALVDAAHGLGL 174
Score = 35.0 bits (81), Expect = 0.30
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 712 FGTPEQLKYLVDECHKAGL 730
+G P+ LK LVD H GL
Sbjct: 156 YGGPDDLKALVDAAHGLGL 174
Score = 35.0 bits (81), Expect = 0.30
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 731 FGTPEQLKYLVDECHKAGL 749
+G P+ LK LVD H GL
Sbjct: 156 YGGPDDLKALVDAAHGLGL 174
Score = 35.0 bits (81), Expect = 0.30
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 750 FGTPEQLKYLVDECHKAGL 768
+G P+ LK LVD H GL
Sbjct: 156 YGGPDDLKALVDAAHGLGL 174
>gnl|CDD|200488 cd11350, AmyAc_4, Alpha amylase catalytic domain found in an
uncharacterized protein family. The Alpha-amylase family
comprises the largest family of glycoside hydrolases
(GH), with the majority of enzymes acting on starch,
glycogen, and related oligo- and polysaccharides. These
proteins catalyze the transformation of alpha-1,4 and
alpha-1,6 glucosidic linkages with retention of the
anomeric center. The protein is described as having 3
domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a
loop between the beta 3 strand and alpha 3 helix of A; C
is the C-terminal extension characterized by a Greek key.
The majority of the enzymes have an active site cleft
found between domains A and B where a triad of catalytic
residues (Asp, Glu and Asp) performs catalysis. Other
members of this family have lost the catalytic activity
as in the case of the human 4F2hc, or only have 2
residues that serve as the catalytic nucleophile and the
acid/base, such as Thermus A4 beta-galactosidase with 2
Glu residues (GH42) and human alpha-galactosidase with 2
Asp (GH31). The family members are quite extensive and
include: alpha amylase, maltosyltransferase, cyclodextrin
glycotransferase, maltogenic amylase, neopullulanase,
isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 390
Score = 70.4 bits (173), Expect = 2e-12
Identities = 39/104 (37%), Positives = 53/104 (50%), Gaps = 14/104 (13%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-----DGTQACFFHDGPR- 1086
+GTPE LK LVDECH+ G+ V+LDVV++HA +G + D D P
Sbjct: 78 YGTPEDLKRLVDECHQRGIAVILDVVYNHA-----EGQSPLARLYWDYWYNPPPADPPWF 132
Query: 1087 ---GTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 1127
G H + FN+ F+ R++L+EY DGFRFD
Sbjct: 133 NVWGPHFYYVGYDFNHESPPTRDFVDDVNRYWLEEYHIDGFRFD 176
Score = 37.6 bits (88), Expect = 0.040
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 769 FGTPEQLKYLVDECHKAGLLCFMHVVCAAGDFNNWNREEFAYKKLDFGKW 818
+GTPE LK LVDECH+ G+ + VV +N+ + +L + W
Sbjct: 78 YGTPEDLKRLVDECHQRGIAVILDVV-----YNHAE-GQSPLARLYWDYW 121
Score = 35.3 bits (82), Expect = 0.22
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 123 FGTPEQLKYLVDECHKAG 140
+GTPE LK LVDECH+ G
Sbjct: 78 YGTPEDLKRLVDECHQRG 95
Score = 35.3 bits (82), Expect = 0.22
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 142 FGTPEQLKYLVDECHKAG 159
+GTPE LK LVDECH+ G
Sbjct: 78 YGTPEDLKRLVDECHQRG 95
Score = 35.3 bits (82), Expect = 0.22
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 161 FGTPEQLKYLVDECHKAG 178
+GTPE LK LVDECH+ G
Sbjct: 78 YGTPEDLKRLVDECHQRG 95
Score = 35.3 bits (82), Expect = 0.22
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 180 FGTPEQLKYLVDECHKAG 197
+GTPE LK LVDECH+ G
Sbjct: 78 YGTPEDLKRLVDECHQRG 95
Score = 35.3 bits (82), Expect = 0.22
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 199 FGTPEQLKYLVDECHKAG 216
+GTPE LK LVDECH+ G
Sbjct: 78 YGTPEDLKRLVDECHQRG 95
Score = 35.3 bits (82), Expect = 0.22
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 218 FGTPEQLKYLVDECHKAG 235
+GTPE LK LVDECH+ G
Sbjct: 78 YGTPEDLKRLVDECHQRG 95
Score = 35.3 bits (82), Expect = 0.22
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 237 FGTPEQLKYLVDECHKAG 254
+GTPE LK LVDECH+ G
Sbjct: 78 YGTPEDLKRLVDECHQRG 95
Score = 35.3 bits (82), Expect = 0.22
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 256 FGTPEQLKYLVDECHKAG 273
+GTPE LK LVDECH+ G
Sbjct: 78 YGTPEDLKRLVDECHQRG 95
Score = 35.3 bits (82), Expect = 0.22
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 275 FGTPEQLKYLVDECHKAG 292
+GTPE LK LVDECH+ G
Sbjct: 78 YGTPEDLKRLVDECHQRG 95
Score = 35.3 bits (82), Expect = 0.22
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 294 FGTPEQLKYLVDECHKAG 311
+GTPE LK LVDECH+ G
Sbjct: 78 YGTPEDLKRLVDECHQRG 95
Score = 35.3 bits (82), Expect = 0.22
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 313 FGTPEQLKYLVDECHKAG 330
+GTPE LK LVDECH+ G
Sbjct: 78 YGTPEDLKRLVDECHQRG 95
Score = 35.3 bits (82), Expect = 0.22
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 332 FGTPEQLKYLVDECHKAG 349
+GTPE LK LVDECH+ G
Sbjct: 78 YGTPEDLKRLVDECHQRG 95
Score = 35.3 bits (82), Expect = 0.22
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 351 FGTPEQLKYLVDECHKAG 368
+GTPE LK LVDECH+ G
Sbjct: 78 YGTPEDLKRLVDECHQRG 95
Score = 35.3 bits (82), Expect = 0.22
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 370 FGTPEQLKYLVDECHKAG 387
+GTPE LK LVDECH+ G
Sbjct: 78 YGTPEDLKRLVDECHQRG 95
Score = 35.3 bits (82), Expect = 0.22
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 389 FGTPEQLKYLVDECHKAG 406
+GTPE LK LVDECH+ G
Sbjct: 78 YGTPEDLKRLVDECHQRG 95
Score = 35.3 bits (82), Expect = 0.22
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 408 FGTPEQLKYLVDECHKAG 425
+GTPE LK LVDECH+ G
Sbjct: 78 YGTPEDLKRLVDECHQRG 95
Score = 35.3 bits (82), Expect = 0.22
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 427 FGTPEQLKYLVDECHKAG 444
+GTPE LK LVDECH+ G
Sbjct: 78 YGTPEDLKRLVDECHQRG 95
Score = 35.3 bits (82), Expect = 0.22
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 446 FGTPEQLKYLVDECHKAG 463
+GTPE LK LVDECH+ G
Sbjct: 78 YGTPEDLKRLVDECHQRG 95
Score = 35.3 bits (82), Expect = 0.22
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 465 FGTPEQLKYLVDECHKAG 482
+GTPE LK LVDECH+ G
Sbjct: 78 YGTPEDLKRLVDECHQRG 95
Score = 35.3 bits (82), Expect = 0.22
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 484 FGTPEQLKYLVDECHKAG 501
+GTPE LK LVDECH+ G
Sbjct: 78 YGTPEDLKRLVDECHQRG 95
Score = 35.3 bits (82), Expect = 0.22
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 503 FGTPEQLKYLVDECHKAG 520
+GTPE LK LVDECH+ G
Sbjct: 78 YGTPEDLKRLVDECHQRG 95
Score = 35.3 bits (82), Expect = 0.22
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 522 FGTPEQLKYLVDECHKAG 539
+GTPE LK LVDECH+ G
Sbjct: 78 YGTPEDLKRLVDECHQRG 95
Score = 35.3 bits (82), Expect = 0.22
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 541 FGTPEQLKYLVDECHKAG 558
+GTPE LK LVDECH+ G
Sbjct: 78 YGTPEDLKRLVDECHQRG 95
Score = 35.3 bits (82), Expect = 0.22
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 560 FGTPEQLKYLVDECHKAG 577
+GTPE LK LVDECH+ G
Sbjct: 78 YGTPEDLKRLVDECHQRG 95
Score = 35.3 bits (82), Expect = 0.22
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 579 FGTPEQLKYLVDECHKAG 596
+GTPE LK LVDECH+ G
Sbjct: 78 YGTPEDLKRLVDECHQRG 95
Score = 35.3 bits (82), Expect = 0.22
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 598 FGTPEQLKYLVDECHKAG 615
+GTPE LK LVDECH+ G
Sbjct: 78 YGTPEDLKRLVDECHQRG 95
Score = 35.3 bits (82), Expect = 0.22
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 617 FGTPEQLKYLVDECHKAG 634
+GTPE LK LVDECH+ G
Sbjct: 78 YGTPEDLKRLVDECHQRG 95
Score = 35.3 bits (82), Expect = 0.22
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 636 FGTPEQLKYLVDECHKAG 653
+GTPE LK LVDECH+ G
Sbjct: 78 YGTPEDLKRLVDECHQRG 95
Score = 35.3 bits (82), Expect = 0.22
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 655 FGTPEQLKYLVDECHKAG 672
+GTPE LK LVDECH+ G
Sbjct: 78 YGTPEDLKRLVDECHQRG 95
Score = 35.3 bits (82), Expect = 0.22
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 674 FGTPEQLKYLVDECHKAG 691
+GTPE LK LVDECH+ G
Sbjct: 78 YGTPEDLKRLVDECHQRG 95
Score = 35.3 bits (82), Expect = 0.22
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 693 FGTPEQLKYLVDECHKAG 710
+GTPE LK LVDECH+ G
Sbjct: 78 YGTPEDLKRLVDECHQRG 95
Score = 35.3 bits (82), Expect = 0.22
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 712 FGTPEQLKYLVDECHKAG 729
+GTPE LK LVDECH+ G
Sbjct: 78 YGTPEDLKRLVDECHQRG 95
Score = 35.3 bits (82), Expect = 0.22
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 731 FGTPEQLKYLVDECHKAG 748
+GTPE LK LVDECH+ G
Sbjct: 78 YGTPEDLKRLVDECHQRG 95
Score = 35.3 bits (82), Expect = 0.22
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 750 FGTPEQLKYLVDECHKAG 767
+GTPE LK LVDECH+ G
Sbjct: 78 YGTPEDLKRLVDECHQRG 95
>gnl|CDD|200452 cd11313, AmyAc_arch_bac_AmyA, Alpha amylase catalytic domain found in
archaeal and bacterial Alpha-amylases (also called
1,4-alpha-D-glucan-4-glucanohydrolase). AmyA (EC
3.2.1.1) catalyzes the hydrolysis of alpha-(1,4)
glycosidic linkages of glycogen, starch, related
polysaccharides, and some oligosaccharides. This group
includes firmicutes, bacteroidetes, and proteobacteria.
The Alpha-amylase family comprises the largest family of
glycoside hydrolases (GH), with the majority of enzymes
acting on starch, glycogen, and related oligo- and
polysaccharides. These proteins catalyze the
transformation of alpha-1,4 and alpha-1,6 glucosidic
linkages with retention of the anomeric center. The
protein is described as having 3 domains: A, B, C. A is a
(beta/alpha) 8-barrel; B is a loop between the beta 3
strand and alpha 3 helix of A; C is the C-terminal
extension characterized by a Greek key. The majority of
the enzymes have an active site cleft found between
domains A and B where a triad of catalytic residues (Asp,
Glu and Asp) performs catalysis. Other members of this
family have lost the catalytic activity as in the case of
the human 4F2hc, or only have 2 residues that serve as
the catalytic nucleophile and the acid/base, such as
Thermus A4 beta-galactosidase with 2 Glu residues (GH42)
and human alpha-galactosidase with 2 Asp residues (GH31).
The family members are quite extensive and include: alpha
amylase, maltosyltransferase, cyclodextrin
glycotransferase, maltogenic amylase, neopullulanase,
isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 336
Score = 63.3 bits (155), Expect = 2e-10
Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 10/100 (10%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRG--THP 1090
+GT E K LVDE H G+ V+LD V +H + + + ++ G T+
Sbjct: 72 YGTLEDFKALVDEAHDRGMKVILDWVANHTAWD-----HPLVEEHPEWYLRDSDGNITNK 126
Query: 1091 LWD-SRL--FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 1127
++D + + +YS E+ +++ +++++ E+ DGFR D
Sbjct: 127 VFDWTDVADLDYSNPELRDYMIDAMKYWVREFDVDGFRCD 166
Score = 33.3 bits (77), Expect = 0.77
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 769 FGTPEQLKYLVDECHKAGLLCFMHVV 794
+GT E K LVDE H G+ + V
Sbjct: 72 YGTLEDFKALVDEAHDRGMKVILDWV 97
Score = 31.8 bits (73), Expect = 2.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 123 FGTPEQLKYLVDECHKAGL 141
+GT E K LVDE H G+
Sbjct: 72 YGTLEDFKALVDEAHDRGM 90
Score = 31.8 bits (73), Expect = 2.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 142 FGTPEQLKYLVDECHKAGL 160
+GT E K LVDE H G+
Sbjct: 72 YGTLEDFKALVDEAHDRGM 90
Score = 31.8 bits (73), Expect = 2.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 161 FGTPEQLKYLVDECHKAGL 179
+GT E K LVDE H G+
Sbjct: 72 YGTLEDFKALVDEAHDRGM 90
Score = 31.8 bits (73), Expect = 2.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 180 FGTPEQLKYLVDECHKAGL 198
+GT E K LVDE H G+
Sbjct: 72 YGTLEDFKALVDEAHDRGM 90
Score = 31.8 bits (73), Expect = 2.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 199 FGTPEQLKYLVDECHKAGL 217
+GT E K LVDE H G+
Sbjct: 72 YGTLEDFKALVDEAHDRGM 90
Score = 31.8 bits (73), Expect = 2.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 218 FGTPEQLKYLVDECHKAGL 236
+GT E K LVDE H G+
Sbjct: 72 YGTLEDFKALVDEAHDRGM 90
Score = 31.8 bits (73), Expect = 2.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 237 FGTPEQLKYLVDECHKAGL 255
+GT E K LVDE H G+
Sbjct: 72 YGTLEDFKALVDEAHDRGM 90
Score = 31.8 bits (73), Expect = 2.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 256 FGTPEQLKYLVDECHKAGL 274
+GT E K LVDE H G+
Sbjct: 72 YGTLEDFKALVDEAHDRGM 90
Score = 31.8 bits (73), Expect = 2.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 275 FGTPEQLKYLVDECHKAGL 293
+GT E K LVDE H G+
Sbjct: 72 YGTLEDFKALVDEAHDRGM 90
Score = 31.8 bits (73), Expect = 2.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 294 FGTPEQLKYLVDECHKAGL 312
+GT E K LVDE H G+
Sbjct: 72 YGTLEDFKALVDEAHDRGM 90
Score = 31.8 bits (73), Expect = 2.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 313 FGTPEQLKYLVDECHKAGL 331
+GT E K LVDE H G+
Sbjct: 72 YGTLEDFKALVDEAHDRGM 90
Score = 31.8 bits (73), Expect = 2.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 332 FGTPEQLKYLVDECHKAGL 350
+GT E K LVDE H G+
Sbjct: 72 YGTLEDFKALVDEAHDRGM 90
Score = 31.8 bits (73), Expect = 2.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 351 FGTPEQLKYLVDECHKAGL 369
+GT E K LVDE H G+
Sbjct: 72 YGTLEDFKALVDEAHDRGM 90
Score = 31.8 bits (73), Expect = 2.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 370 FGTPEQLKYLVDECHKAGL 388
+GT E K LVDE H G+
Sbjct: 72 YGTLEDFKALVDEAHDRGM 90
Score = 31.8 bits (73), Expect = 2.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 389 FGTPEQLKYLVDECHKAGL 407
+GT E K LVDE H G+
Sbjct: 72 YGTLEDFKALVDEAHDRGM 90
Score = 31.8 bits (73), Expect = 2.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 408 FGTPEQLKYLVDECHKAGL 426
+GT E K LVDE H G+
Sbjct: 72 YGTLEDFKALVDEAHDRGM 90
Score = 31.8 bits (73), Expect = 2.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 427 FGTPEQLKYLVDECHKAGL 445
+GT E K LVDE H G+
Sbjct: 72 YGTLEDFKALVDEAHDRGM 90
Score = 31.8 bits (73), Expect = 2.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 446 FGTPEQLKYLVDECHKAGL 464
+GT E K LVDE H G+
Sbjct: 72 YGTLEDFKALVDEAHDRGM 90
Score = 31.8 bits (73), Expect = 2.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 465 FGTPEQLKYLVDECHKAGL 483
+GT E K LVDE H G+
Sbjct: 72 YGTLEDFKALVDEAHDRGM 90
Score = 31.8 bits (73), Expect = 2.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 484 FGTPEQLKYLVDECHKAGL 502
+GT E K LVDE H G+
Sbjct: 72 YGTLEDFKALVDEAHDRGM 90
Score = 31.8 bits (73), Expect = 2.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 503 FGTPEQLKYLVDECHKAGL 521
+GT E K LVDE H G+
Sbjct: 72 YGTLEDFKALVDEAHDRGM 90
Score = 31.8 bits (73), Expect = 2.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 522 FGTPEQLKYLVDECHKAGL 540
+GT E K LVDE H G+
Sbjct: 72 YGTLEDFKALVDEAHDRGM 90
Score = 31.8 bits (73), Expect = 2.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 541 FGTPEQLKYLVDECHKAGL 559
+GT E K LVDE H G+
Sbjct: 72 YGTLEDFKALVDEAHDRGM 90
Score = 31.8 bits (73), Expect = 2.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 560 FGTPEQLKYLVDECHKAGL 578
+GT E K LVDE H G+
Sbjct: 72 YGTLEDFKALVDEAHDRGM 90
Score = 31.8 bits (73), Expect = 2.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 579 FGTPEQLKYLVDECHKAGL 597
+GT E K LVDE H G+
Sbjct: 72 YGTLEDFKALVDEAHDRGM 90
Score = 31.8 bits (73), Expect = 2.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 598 FGTPEQLKYLVDECHKAGL 616
+GT E K LVDE H G+
Sbjct: 72 YGTLEDFKALVDEAHDRGM 90
Score = 31.8 bits (73), Expect = 2.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 617 FGTPEQLKYLVDECHKAGL 635
+GT E K LVDE H G+
Sbjct: 72 YGTLEDFKALVDEAHDRGM 90
Score = 31.8 bits (73), Expect = 2.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 636 FGTPEQLKYLVDECHKAGL 654
+GT E K LVDE H G+
Sbjct: 72 YGTLEDFKALVDEAHDRGM 90
Score = 31.8 bits (73), Expect = 2.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 655 FGTPEQLKYLVDECHKAGL 673
+GT E K LVDE H G+
Sbjct: 72 YGTLEDFKALVDEAHDRGM 90
Score = 31.8 bits (73), Expect = 2.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 674 FGTPEQLKYLVDECHKAGL 692
+GT E K LVDE H G+
Sbjct: 72 YGTLEDFKALVDEAHDRGM 90
Score = 31.8 bits (73), Expect = 2.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 693 FGTPEQLKYLVDECHKAGL 711
+GT E K LVDE H G+
Sbjct: 72 YGTLEDFKALVDEAHDRGM 90
Score = 31.8 bits (73), Expect = 2.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 712 FGTPEQLKYLVDECHKAGL 730
+GT E K LVDE H G+
Sbjct: 72 YGTLEDFKALVDEAHDRGM 90
Score = 31.8 bits (73), Expect = 2.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 731 FGTPEQLKYLVDECHKAGL 749
+GT E K LVDE H G+
Sbjct: 72 YGTLEDFKALVDEAHDRGM 90
Score = 31.8 bits (73), Expect = 2.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 750 FGTPEQLKYLVDECHKAGL 768
+GT E K LVDE H G+
Sbjct: 72 YGTLEDFKALVDEAHDRGM 90
>gnl|CDD|200477 cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in
cyclomaltodextrinases and related proteins.
Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase
(NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC
3.2.1.133) catalyze the hydrolysis of alpha-(1,4)
glycosidic linkages on a number of substrates including
cyclomaltodextrins (CDs), pullulan, and starch. These
enzymes hydrolyze CDs and starch to maltose and pullulan
to panose by cleavage of alpha-1,4 glycosidic bonds
whereas alpha-amylases essentially lack activity on CDs
and pullulan. They also catalyze transglycosylation of
oligosaccharides to the C3-, C4- or C6-hydroxyl groups of
various acceptor sugar molecules. Since these proteins
are nearly indistinguishable from each other, they are
referred to as cyclomaltodextrinases (CMDs). The
Alpha-amylase family comprises the largest family of
glycoside hydrolases (GH), with the majority of enzymes
acting on starch, glycogen, and related oligo- and
polysaccharides. These proteins catalyze the
transformation of alpha-1,4 and alpha-1,6 glucosidic
linkages with retention of the anomeric center. The
protein is described as having 3 domains: A, B, C. A is a
(beta/alpha) 8-barrel; B is a loop between the beta 3
strand and alpha 3 helix of A; C is the C-terminal
extension characterized by a Greek key. The majority of
the enzymes have an active site cleft found between
domains A and B where a triad of catalytic residues (Asp,
Glu and Asp) performs catalysis. Other members of this
family have lost the catalytic activity as in the case of
the human 4F2hc, or only have 2 residues that serve as
the catalytic nucleophile and the acid/base, such as
Thermus A4 beta-galactosidase with 2 Glu residues (GH42)
and human alpha-galactosidase with 2 Asp residues (GH31).
The family members are quite extensive and include: alpha
amylase, maltosyltransferase, cyclodextrin
glycotransferase, maltogenic amylase, neopullulanase,
isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 389
Score = 55.6 bits (135), Expect = 1e-07
Identities = 34/121 (28%), Positives = 47/121 (38%), Gaps = 19/121 (15%)
Query: 1032 LFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS-------KNVLDG-----LNEFDGTQAC 1079
GT E K LV+E HK G+ V+LD V +H + G + F
Sbjct: 98 HLGTEEDFKELVEEAHKRGIRVILDGVFNHTGDDSPYFQDVLKYGESSAYQDWFSIYYFW 157
Query: 1080 FFHDGPRGTHPLW---DSRL--FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLY 1134
+ + W S L N EV +L S R++L E DG+R D V +
Sbjct: 158 PYFTDEPPNYESWWGVPS-LPKLNTENPEVREYLDSVARYWLKEGDIDGWRLD-VADEVP 215
Query: 1135 H 1135
H
Sbjct: 216 H 216
Score = 32.8 bits (76), Expect = 1.2
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
Query: 768 LFGTPEQLKYLVDECHKAGLLCFMHVV 794
GT E K LV+E HK G + V+
Sbjct: 98 HLGTEEDFKELVEEAHKRG----IRVI 120
Score = 30.1 bits (69), Expect = 8.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 141 LFGTPEQLKYLVDECHKAG 159
GT E K LV+E HK G
Sbjct: 98 HLGTEEDFKELVEEAHKRG 116
Score = 30.1 bits (69), Expect = 8.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 160 LFGTPEQLKYLVDECHKAG 178
GT E K LV+E HK G
Sbjct: 98 HLGTEEDFKELVEEAHKRG 116
Score = 30.1 bits (69), Expect = 8.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 179 LFGTPEQLKYLVDECHKAG 197
GT E K LV+E HK G
Sbjct: 98 HLGTEEDFKELVEEAHKRG 116
Score = 30.1 bits (69), Expect = 8.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 198 LFGTPEQLKYLVDECHKAG 216
GT E K LV+E HK G
Sbjct: 98 HLGTEEDFKELVEEAHKRG 116
Score = 30.1 bits (69), Expect = 8.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 217 LFGTPEQLKYLVDECHKAG 235
GT E K LV+E HK G
Sbjct: 98 HLGTEEDFKELVEEAHKRG 116
Score = 30.1 bits (69), Expect = 8.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 236 LFGTPEQLKYLVDECHKAG 254
GT E K LV+E HK G
Sbjct: 98 HLGTEEDFKELVEEAHKRG 116
Score = 30.1 bits (69), Expect = 8.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 255 LFGTPEQLKYLVDECHKAG 273
GT E K LV+E HK G
Sbjct: 98 HLGTEEDFKELVEEAHKRG 116
Score = 30.1 bits (69), Expect = 8.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 274 LFGTPEQLKYLVDECHKAG 292
GT E K LV+E HK G
Sbjct: 98 HLGTEEDFKELVEEAHKRG 116
Score = 30.1 bits (69), Expect = 8.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 293 LFGTPEQLKYLVDECHKAG 311
GT E K LV+E HK G
Sbjct: 98 HLGTEEDFKELVEEAHKRG 116
Score = 30.1 bits (69), Expect = 8.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 312 LFGTPEQLKYLVDECHKAG 330
GT E K LV+E HK G
Sbjct: 98 HLGTEEDFKELVEEAHKRG 116
Score = 30.1 bits (69), Expect = 8.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 331 LFGTPEQLKYLVDECHKAG 349
GT E K LV+E HK G
Sbjct: 98 HLGTEEDFKELVEEAHKRG 116
Score = 30.1 bits (69), Expect = 8.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 350 LFGTPEQLKYLVDECHKAG 368
GT E K LV+E HK G
Sbjct: 98 HLGTEEDFKELVEEAHKRG 116
Score = 30.1 bits (69), Expect = 8.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 369 LFGTPEQLKYLVDECHKAG 387
GT E K LV+E HK G
Sbjct: 98 HLGTEEDFKELVEEAHKRG 116
Score = 30.1 bits (69), Expect = 8.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 388 LFGTPEQLKYLVDECHKAG 406
GT E K LV+E HK G
Sbjct: 98 HLGTEEDFKELVEEAHKRG 116
Score = 30.1 bits (69), Expect = 8.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 407 LFGTPEQLKYLVDECHKAG 425
GT E K LV+E HK G
Sbjct: 98 HLGTEEDFKELVEEAHKRG 116
Score = 30.1 bits (69), Expect = 8.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 426 LFGTPEQLKYLVDECHKAG 444
GT E K LV+E HK G
Sbjct: 98 HLGTEEDFKELVEEAHKRG 116
Score = 30.1 bits (69), Expect = 8.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 445 LFGTPEQLKYLVDECHKAG 463
GT E K LV+E HK G
Sbjct: 98 HLGTEEDFKELVEEAHKRG 116
Score = 30.1 bits (69), Expect = 8.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 464 LFGTPEQLKYLVDECHKAG 482
GT E K LV+E HK G
Sbjct: 98 HLGTEEDFKELVEEAHKRG 116
Score = 30.1 bits (69), Expect = 8.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 483 LFGTPEQLKYLVDECHKAG 501
GT E K LV+E HK G
Sbjct: 98 HLGTEEDFKELVEEAHKRG 116
Score = 30.1 bits (69), Expect = 8.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 502 LFGTPEQLKYLVDECHKAG 520
GT E K LV+E HK G
Sbjct: 98 HLGTEEDFKELVEEAHKRG 116
Score = 30.1 bits (69), Expect = 8.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 521 LFGTPEQLKYLVDECHKAG 539
GT E K LV+E HK G
Sbjct: 98 HLGTEEDFKELVEEAHKRG 116
Score = 30.1 bits (69), Expect = 8.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 540 LFGTPEQLKYLVDECHKAG 558
GT E K LV+E HK G
Sbjct: 98 HLGTEEDFKELVEEAHKRG 116
Score = 30.1 bits (69), Expect = 8.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 559 LFGTPEQLKYLVDECHKAG 577
GT E K LV+E HK G
Sbjct: 98 HLGTEEDFKELVEEAHKRG 116
Score = 30.1 bits (69), Expect = 8.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 578 LFGTPEQLKYLVDECHKAG 596
GT E K LV+E HK G
Sbjct: 98 HLGTEEDFKELVEEAHKRG 116
Score = 30.1 bits (69), Expect = 8.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 597 LFGTPEQLKYLVDECHKAG 615
GT E K LV+E HK G
Sbjct: 98 HLGTEEDFKELVEEAHKRG 116
Score = 30.1 bits (69), Expect = 8.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 616 LFGTPEQLKYLVDECHKAG 634
GT E K LV+E HK G
Sbjct: 98 HLGTEEDFKELVEEAHKRG 116
Score = 30.1 bits (69), Expect = 8.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 635 LFGTPEQLKYLVDECHKAG 653
GT E K LV+E HK G
Sbjct: 98 HLGTEEDFKELVEEAHKRG 116
Score = 30.1 bits (69), Expect = 8.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 654 LFGTPEQLKYLVDECHKAG 672
GT E K LV+E HK G
Sbjct: 98 HLGTEEDFKELVEEAHKRG 116
Score = 30.1 bits (69), Expect = 8.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 673 LFGTPEQLKYLVDECHKAG 691
GT E K LV+E HK G
Sbjct: 98 HLGTEEDFKELVEEAHKRG 116
Score = 30.1 bits (69), Expect = 8.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 692 LFGTPEQLKYLVDECHKAG 710
GT E K LV+E HK G
Sbjct: 98 HLGTEEDFKELVEEAHKRG 116
Score = 30.1 bits (69), Expect = 8.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 711 LFGTPEQLKYLVDECHKAG 729
GT E K LV+E HK G
Sbjct: 98 HLGTEEDFKELVEEAHKRG 116
Score = 30.1 bits (69), Expect = 8.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 730 LFGTPEQLKYLVDECHKAG 748
GT E K LV+E HK G
Sbjct: 98 HLGTEEDFKELVEEAHKRG 116
Score = 30.1 bits (69), Expect = 8.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 749 LFGTPEQLKYLVDECHKAG 767
GT E K LV+E HK G
Sbjct: 98 HLGTEEDFKELVEEAHKRG 116
>gnl|CDD|217237 pfam02806, Alpha-amylase_C, Alpha amylase, C-terminal all-beta
domain. Alpha amylase is classified as family 13 of the
glycosyl hydrolases. The structure is an 8 stranded
alpha/beta barrel containing the active site, interrupted
by a ~70 a.a. calcium-binding domain protruding between
beta strand 3 and alpha helix 3, and a carboxyl-terminal
Greek key beta-barrel domain.
Length = 92
Score = 50.4 bits (121), Expect = 1e-07
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 1237 YVSTKHEGDKVIIFERAG-----LLFAFNFNGTQSFTDYR 1271
++S G+ VI FER G LL FNF +QS DYR
Sbjct: 1 WISFDDNGNNVIAFERGGDKGGGLLVVFNFTPSQSRQDYR 40
>gnl|CDD|224440 COG1523, PulA, Type II secretory pathway, pullulanase PulA and
related glycosidases [Carbohydrate transport and
metabolism].
Length = 697
Score = 55.0 bits (133), Expect = 2e-07
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 20/101 (19%)
Query: 1039 LKYLVDECHKAGLYVLLDVVHSH-ASKNVLDGLNEFDGT--QACFFHDGPRGTHPLWDSR 1095
K +V HKAG+ V+LDVV +H A N L F G + D D
Sbjct: 267 FKDMVKALHKAGIEVILDVVFNHTAEGNELGPTLSFRGIDPNYYYRLDP--------DGY 318
Query: 1096 LFNYS----EIE-----VLRFLLSNLRWYLDEYQFDGFRFD 1127
N + + V + ++ +LR++++EY DGFRFD
Sbjct: 319 YSNGTGCGNTLNTEHPMVRKLIVDSLRYWVEEYHVDGFRFD 359
>gnl|CDD|200465 cd11326, AmyAc_Glg_debranch, Alpha amylase catalytic domain found in
glycogen debranching enzymes. Debranching enzymes
facilitate the breakdown of glycogen through
glucosyltransferase and glucosidase activity. These
activities are performed by a single enzyme in mammals,
yeast, and some bacteria, but by two distinct enzymes in
Escherichia coli and other bacteria. Debranching enzymes
perform two activities: 4-alpha-D-glucanotransferase (EC
2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33).
4-alpha-D-glucanotransferase catalyzes the endohydrolysis
of 1,6-alpha-D-glucoside linkages at points of branching
in chains of 1,4-linked alpha-D-glucose residues.
Amylo-alpha-1,6-glucosidase catalyzes the endohydrolysis
of 1,6-alpha-D-glucoside linkages at points of branching
in chains of 1,4-linked alpha-D-glucose residues. In
Escherichia coli, GlgX is the debranching enzyme and malQ
is the 4-alpha-glucanotransferase. TreX, an archaeal
glycogen-debranching enzyme has dual activities like
mammals and yeast, but is structurally similar to GlgX.
TreX exists in two oligomeric states, a dimer and
tetramer. Isoamylase (EC 3.2.1.68) is one of the
starch-debranching enzymes that catalyzes the hydrolysis
of alpha-1,6-glucosidic linkages specific in
alpha-glucans such as amylopectin or glycogen and their
beta-limit dextrins. The Alpha-amylase family comprises
the largest family of glycoside hydrolases (GH), with the
majority of enzymes acting on starch, glycogen, and
related oligo- and polysaccharides. These proteins
catalyze the transformation of alpha-1,4 and alpha-1,6
glucosidic linkages with retention of the anomeric
center. The protein is described as having 3 domains: A,
B, C. A is a (beta/alpha) 8-barrel; B is a loop between
the beta 3 strand and alpha 3 helix of A; C is the
C-terminal extension characterized by a Greek key. The
majority of the enzymes have an active site cleft found
between domains A and B where a triad of catalytic
residues (Asp, Glu and Asp) performs catalysis. Other
members of this family have lost the catalytic activity
as in the case of the human 4F2hc, or only have 2
residues that serve as the catalytic nucleophile and the
acid/base, such as Thermus A4 beta-galactosidase with 2
Glu residues (GH42) and human alpha-galactosidase with 2
Asp residues (GH31). The family members are quite
extensive and include: alpha amylase,
maltosyltransferase, cyclodextrin glycotransferase,
maltogenic amylase, neopullulanase, isoamylase,
1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 433
Score = 54.0 bits (131), Expect = 3e-07
Identities = 36/134 (26%), Positives = 54/134 (40%), Gaps = 40/134 (29%)
Query: 1014 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF 1073
F P+ +Y D+ + ++ K +V HKAG+ V+LDVV++H + E
Sbjct: 91 FFAPDP-RYASDDAPGGPV----DEFKAMVKALHKAGIEVILDVVYNHTA--------EG 137
Query: 1074 DGTQACFFHDGP----RG-------THPLWDSRLFNYS---------EIEVLRFLLSNLR 1113
GP RG NY+ VLR +L +LR
Sbjct: 138 G-------ELGPTLSFRGLDNASYYRLDPDGPYYLNYTGCGNTLNTNHPVVLRLILDSLR 190
Query: 1114 WYLDEYQFDGFRFD 1127
+++ E DGFRFD
Sbjct: 191 YWVTEMHVDGFRFD 204
>gnl|CDD|217288 pfam02922, CBM_48, Carbohydrate-binding module 48 (Isoamylase
N-terminal domain). This domain is found in a range of
enzymes that act on branched substrates - isoamylase,
pullulanase and branching enzyme. This family also
contains the beta subunit of 5' AMP activated kinase.
Length = 83
Score = 48.5 bits (116), Expect = 5e-07
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 797 AGDFNNWNREEFAYKKL-DFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDRLSP 855
DFNNW+ EE ++ + G WE+ LP + L H + K V G + +L P
Sbjct: 28 VLDFNNWDGEEHPMERKREGGVWEVFLPGD------LPHGGRYKYRVDGPDGPIKLKLDP 81
Query: 856 WA 857
+A
Sbjct: 82 YA 83
>gnl|CDD|200458 cd11319, AmyAc_euk_AmyA, Alpha amylase catalytic domain found in
eukaryotic Alpha-amylases (also called
1,4-alpha-D-glucan-4-glucanohydrolase). AmyA (EC
3.2.1.1) catalyzes the hydrolysis of alpha-(1,4)
glycosidic linkages of glycogen, starch, related
polysaccharides, and some oligosaccharides. This group
includes eukaryotic alpha-amylases including proteins
from fungi, sponges, and protozoans. The Alpha-amylase
family comprises the largest family of glycoside
hydrolases (GH), with the majority of enzymes acting on
starch, glycogen, and related oligo- and polysaccharides.
These proteins catalyze the transformation of alpha-1,4
and alpha-1,6 glucosidic linkages with retention of the
anomeric center. The protein is described as having 3
domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a
loop between the beta 3 strand and alpha 3 helix of A; C
is the C-terminal extension characterized by a Greek key.
The majority of the enzymes have an active site cleft
found between domains A and B where a triad of catalytic
residues (Asp, Glu and Asp) performs catalysis. Other
members of this family have lost the catalytic activity
as in the case of the human 4F2hc, or only have 2
residues that serve as the catalytic nucleophile and the
acid/base, such as Thermus A4 beta-galactosidase with 2
Glu residues (GH42) and human alpha-galactosidase with 2
Asp residues (GH31). The family members are quite
extensive and include: alpha amylase,
maltosyltransferase, cyclodextrin glycotransferase,
maltogenic amylase, neopullulanase, isoamylase,
1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 375
Score = 52.2 bits (126), Expect = 1e-06
Identities = 27/127 (21%), Positives = 44/127 (34%), Gaps = 42/127 (33%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSH-ASKNVLDGLNEFDGT---------QACFFH 1082
FGT + LK L HK G+Y+++DVV +H AS ++ C+
Sbjct: 94 FGTADDLKALSKALHKRGMYLMVDVVVNHMASAGPGSDVDYSSFVPFNDSSYYHPYCWIT 153
Query: 1083 DGPRGTHPLWDSRLFNYSEIE--------------------VLRFLLSNLRWYLDEYQFD 1122
D ++ N + +E V+ L ++ + Y D
Sbjct: 154 D--------YN----NQTSVEDCWLGDDVVALPDLNTENPFVVSTLNDWIKNLVSNYSID 201
Query: 1123 GFRFDGV 1129
G R D
Sbjct: 202 GLRIDTA 208
Score = 32.9 bits (76), Expect = 0.95
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 769 FGTPEQLKYLVDECHKAGLLCFMHVV 794
FGT + LK L HK G+ + VV
Sbjct: 94 FGTADDLKALSKALHKRGMYLMVDVV 119
Score = 30.2 bits (69), Expect = 6.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 123 FGTPEQLKYLVDECHKAGLF 142
FGT + LK L HK G++
Sbjct: 94 FGTADDLKALSKALHKRGMY 113
Score = 30.2 bits (69), Expect = 6.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 142 FGTPEQLKYLVDECHKAGLF 161
FGT + LK L HK G++
Sbjct: 94 FGTADDLKALSKALHKRGMY 113
Score = 30.2 bits (69), Expect = 6.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 161 FGTPEQLKYLVDECHKAGLF 180
FGT + LK L HK G++
Sbjct: 94 FGTADDLKALSKALHKRGMY 113
Score = 30.2 bits (69), Expect = 6.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 180 FGTPEQLKYLVDECHKAGLF 199
FGT + LK L HK G++
Sbjct: 94 FGTADDLKALSKALHKRGMY 113
Score = 30.2 bits (69), Expect = 6.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 199 FGTPEQLKYLVDECHKAGLF 218
FGT + LK L HK G++
Sbjct: 94 FGTADDLKALSKALHKRGMY 113
Score = 30.2 bits (69), Expect = 6.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 218 FGTPEQLKYLVDECHKAGLF 237
FGT + LK L HK G++
Sbjct: 94 FGTADDLKALSKALHKRGMY 113
Score = 30.2 bits (69), Expect = 6.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 237 FGTPEQLKYLVDECHKAGLF 256
FGT + LK L HK G++
Sbjct: 94 FGTADDLKALSKALHKRGMY 113
Score = 30.2 bits (69), Expect = 6.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 256 FGTPEQLKYLVDECHKAGLF 275
FGT + LK L HK G++
Sbjct: 94 FGTADDLKALSKALHKRGMY 113
Score = 30.2 bits (69), Expect = 6.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 275 FGTPEQLKYLVDECHKAGLF 294
FGT + LK L HK G++
Sbjct: 94 FGTADDLKALSKALHKRGMY 113
Score = 30.2 bits (69), Expect = 6.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 294 FGTPEQLKYLVDECHKAGLF 313
FGT + LK L HK G++
Sbjct: 94 FGTADDLKALSKALHKRGMY 113
Score = 30.2 bits (69), Expect = 6.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 313 FGTPEQLKYLVDECHKAGLF 332
FGT + LK L HK G++
Sbjct: 94 FGTADDLKALSKALHKRGMY 113
Score = 30.2 bits (69), Expect = 6.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 332 FGTPEQLKYLVDECHKAGLF 351
FGT + LK L HK G++
Sbjct: 94 FGTADDLKALSKALHKRGMY 113
Score = 30.2 bits (69), Expect = 6.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 351 FGTPEQLKYLVDECHKAGLF 370
FGT + LK L HK G++
Sbjct: 94 FGTADDLKALSKALHKRGMY 113
Score = 30.2 bits (69), Expect = 6.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 370 FGTPEQLKYLVDECHKAGLF 389
FGT + LK L HK G++
Sbjct: 94 FGTADDLKALSKALHKRGMY 113
Score = 30.2 bits (69), Expect = 6.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 389 FGTPEQLKYLVDECHKAGLF 408
FGT + LK L HK G++
Sbjct: 94 FGTADDLKALSKALHKRGMY 113
Score = 30.2 bits (69), Expect = 6.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 408 FGTPEQLKYLVDECHKAGLF 427
FGT + LK L HK G++
Sbjct: 94 FGTADDLKALSKALHKRGMY 113
Score = 30.2 bits (69), Expect = 6.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 427 FGTPEQLKYLVDECHKAGLF 446
FGT + LK L HK G++
Sbjct: 94 FGTADDLKALSKALHKRGMY 113
Score = 30.2 bits (69), Expect = 6.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 446 FGTPEQLKYLVDECHKAGLF 465
FGT + LK L HK G++
Sbjct: 94 FGTADDLKALSKALHKRGMY 113
Score = 30.2 bits (69), Expect = 6.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 465 FGTPEQLKYLVDECHKAGLF 484
FGT + LK L HK G++
Sbjct: 94 FGTADDLKALSKALHKRGMY 113
Score = 30.2 bits (69), Expect = 6.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 484 FGTPEQLKYLVDECHKAGLF 503
FGT + LK L HK G++
Sbjct: 94 FGTADDLKALSKALHKRGMY 113
Score = 30.2 bits (69), Expect = 6.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 503 FGTPEQLKYLVDECHKAGLF 522
FGT + LK L HK G++
Sbjct: 94 FGTADDLKALSKALHKRGMY 113
Score = 30.2 bits (69), Expect = 6.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 522 FGTPEQLKYLVDECHKAGLF 541
FGT + LK L HK G++
Sbjct: 94 FGTADDLKALSKALHKRGMY 113
Score = 30.2 bits (69), Expect = 6.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 541 FGTPEQLKYLVDECHKAGLF 560
FGT + LK L HK G++
Sbjct: 94 FGTADDLKALSKALHKRGMY 113
Score = 30.2 bits (69), Expect = 6.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 560 FGTPEQLKYLVDECHKAGLF 579
FGT + LK L HK G++
Sbjct: 94 FGTADDLKALSKALHKRGMY 113
Score = 30.2 bits (69), Expect = 6.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 579 FGTPEQLKYLVDECHKAGLF 598
FGT + LK L HK G++
Sbjct: 94 FGTADDLKALSKALHKRGMY 113
Score = 30.2 bits (69), Expect = 6.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 598 FGTPEQLKYLVDECHKAGLF 617
FGT + LK L HK G++
Sbjct: 94 FGTADDLKALSKALHKRGMY 113
Score = 30.2 bits (69), Expect = 6.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 617 FGTPEQLKYLVDECHKAGLF 636
FGT + LK L HK G++
Sbjct: 94 FGTADDLKALSKALHKRGMY 113
Score = 30.2 bits (69), Expect = 6.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 636 FGTPEQLKYLVDECHKAGLF 655
FGT + LK L HK G++
Sbjct: 94 FGTADDLKALSKALHKRGMY 113
Score = 30.2 bits (69), Expect = 6.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 655 FGTPEQLKYLVDECHKAGLF 674
FGT + LK L HK G++
Sbjct: 94 FGTADDLKALSKALHKRGMY 113
Score = 30.2 bits (69), Expect = 6.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 674 FGTPEQLKYLVDECHKAGLF 693
FGT + LK L HK G++
Sbjct: 94 FGTADDLKALSKALHKRGMY 113
Score = 30.2 bits (69), Expect = 6.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 693 FGTPEQLKYLVDECHKAGLF 712
FGT + LK L HK G++
Sbjct: 94 FGTADDLKALSKALHKRGMY 113
Score = 30.2 bits (69), Expect = 6.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 712 FGTPEQLKYLVDECHKAGLF 731
FGT + LK L HK G++
Sbjct: 94 FGTADDLKALSKALHKRGMY 113
Score = 30.2 bits (69), Expect = 6.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 731 FGTPEQLKYLVDECHKAGLF 750
FGT + LK L HK G++
Sbjct: 94 FGTADDLKALSKALHKRGMY 113
Score = 30.2 bits (69), Expect = 6.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 750 FGTPEQLKYLVDECHKAGLF 769
FGT + LK L HK G++
Sbjct: 94 FGTADDLKALSKALHKRGMY 113
>gnl|CDD|233728 TIGR02102, pullulan_Gpos, pullulanase, extracellular, Gram-positive.
Pullulan is an unusual, industrially important
polysaccharide in which short alpha-1,4 chains
(maltotriose) are connected in alpha-1,6 linkages.
Enzymes that cleave alpha-1,6 linkages in pullulan and
release maltotriose are called pullulanases although
pullulan itself may not be the natural substrate. In
contrast, a glycogen debranching enzyme such GlgX,
homologous to this family, can release glucose at
alpha,1-6 linkages from glycogen first subjected to limit
degradation by phosphorylase. Characterized members of
this family include a surface-located pullulanase from
Streptococcus pneumoniae (PMID:11083842) and an
extracellular bifunctional amylase/pullulanase with
C-terminal pullulanase activity (PMID:8798645).
Length = 1111
Score = 52.2 bits (125), Expect = 2e-06
Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 23/100 (23%)
Query: 1038 QLKYLVDECHKAGLYVLLDVVHSHASK---------NVLDGLNEFDGTQACFFHDGPRG- 1087
+ K L++E HK G+ V+LDVV++H +K N ++ DGT F G G
Sbjct: 556 EFKNLINEIHKRGMGVILDVVYNHTAKVYIFEDLEPNYYHFMDA-DGTPRTSFGGGRLGT 614
Query: 1088 THPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 1127
TH + SR R L+ ++++ +DE++ DGFRFD
Sbjct: 615 THEM--SR----------RILVDSIKYLVDEFKVDGFRFD 642
>gnl|CDD|200451 cd00551, AmyAc_family, Alpha amylase catalytic domain family. The
Alpha-amylase family comprises the largest family of
glycoside hydrolases (GH), with the majority of enzymes
acting on starch, glycogen, and related oligo- and
polysaccharides. These proteins catalyze the
transformation of alpha-1,4 and alpha-1,6 glucosidic
linkages with retention of the anomeric center. The
protein is described as having 3 domains: A, B, C. A is a
(beta/alpha) 8-barrel; B is a loop between the beta 3
strand and alpha 3 helix of A; and C is the C-terminal
extension characterized by a Greek key. The majority of
the enzymes have an active site cleft found between
domains A and B where a triad of catalytic residues (Asp,
Glu and Asp) performs catalysis. Other members of this
family have lost this catalytic activity as in the case
of the human 4F2hc, or only have 2 residues that serve as
the catalytic nucleophile and the acid/base, such as
Thermus A4 beta-galactosidase with 2 Glu residues (GH42)
and human alpha-galactosidase with 2 Asp residues (GH31).
The family members are quite extensive and include: alpha
amylase, maltosyltransferase, cyclodextrin
glycotransferase, maltogenic amylase, neopullulanase,
isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 260
Score = 49.1 bits (117), Expect = 6e-06
Identities = 23/97 (23%), Positives = 30/97 (30%), Gaps = 49/97 (50%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092
GT E K LV HK G+ V+LD+V +H
Sbjct: 72 LGTEEDFKELVKAAHKRGIKVILDLVFNH------------------------------- 100
Query: 1093 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGV 1129
++LRF L + DGFR D
Sbjct: 101 ----------DILRFWL--------DEGVDGFRLDAA 119
Score = 36.0 bits (83), Expect = 0.10
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 14/64 (21%)
Query: 111 LIQSIQYI---------LTGVFGTPEQLKYLVDECHK-----AGLFGTPEQLKYLVDECH 156
+I + Y+ LT +F +PE Y D+ + GT E K LV H
Sbjct: 27 IIDKLDYLKDLGVTAIWLTPIFESPEYDGYDKDDGYLDYYEIDPRLGTEEDFKELVKAAH 86
Query: 157 KAGL 160
K G+
Sbjct: 87 KRGI 90
Score = 34.5 bits (79), Expect = 0.26
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 769 FGTPEQLKYLVDECHKAGLLCFMHVV 794
GT E K LV HK G+ + +V
Sbjct: 72 LGTEEDFKELVKAAHKRGIKVILDLV 97
Score = 32.9 bits (75), Expect = 0.84
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 180 FGTPEQLKYLVDECHKAGL 198
GT E K LV HK G+
Sbjct: 72 LGTEEDFKELVKAAHKRGI 90
Score = 32.9 bits (75), Expect = 0.84
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 199 FGTPEQLKYLVDECHKAGL 217
GT E K LV HK G+
Sbjct: 72 LGTEEDFKELVKAAHKRGI 90
Score = 32.9 bits (75), Expect = 0.84
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 218 FGTPEQLKYLVDECHKAGL 236
GT E K LV HK G+
Sbjct: 72 LGTEEDFKELVKAAHKRGI 90
Score = 32.9 bits (75), Expect = 0.84
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 237 FGTPEQLKYLVDECHKAGL 255
GT E K LV HK G+
Sbjct: 72 LGTEEDFKELVKAAHKRGI 90
Score = 32.9 bits (75), Expect = 0.84
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 256 FGTPEQLKYLVDECHKAGL 274
GT E K LV HK G+
Sbjct: 72 LGTEEDFKELVKAAHKRGI 90
Score = 32.9 bits (75), Expect = 0.84
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 275 FGTPEQLKYLVDECHKAGL 293
GT E K LV HK G+
Sbjct: 72 LGTEEDFKELVKAAHKRGI 90
Score = 32.9 bits (75), Expect = 0.84
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 294 FGTPEQLKYLVDECHKAGL 312
GT E K LV HK G+
Sbjct: 72 LGTEEDFKELVKAAHKRGI 90
Score = 32.9 bits (75), Expect = 0.84
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 313 FGTPEQLKYLVDECHKAGL 331
GT E K LV HK G+
Sbjct: 72 LGTEEDFKELVKAAHKRGI 90
Score = 32.9 bits (75), Expect = 0.84
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 332 FGTPEQLKYLVDECHKAGL 350
GT E K LV HK G+
Sbjct: 72 LGTEEDFKELVKAAHKRGI 90
Score = 32.9 bits (75), Expect = 0.84
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 351 FGTPEQLKYLVDECHKAGL 369
GT E K LV HK G+
Sbjct: 72 LGTEEDFKELVKAAHKRGI 90
Score = 32.9 bits (75), Expect = 0.84
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 370 FGTPEQLKYLVDECHKAGL 388
GT E K LV HK G+
Sbjct: 72 LGTEEDFKELVKAAHKRGI 90
Score = 32.9 bits (75), Expect = 0.84
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 389 FGTPEQLKYLVDECHKAGL 407
GT E K LV HK G+
Sbjct: 72 LGTEEDFKELVKAAHKRGI 90
Score = 32.9 bits (75), Expect = 0.84
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 408 FGTPEQLKYLVDECHKAGL 426
GT E K LV HK G+
Sbjct: 72 LGTEEDFKELVKAAHKRGI 90
Score = 32.9 bits (75), Expect = 0.84
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 427 FGTPEQLKYLVDECHKAGL 445
GT E K LV HK G+
Sbjct: 72 LGTEEDFKELVKAAHKRGI 90
Score = 32.9 bits (75), Expect = 0.84
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 446 FGTPEQLKYLVDECHKAGL 464
GT E K LV HK G+
Sbjct: 72 LGTEEDFKELVKAAHKRGI 90
Score = 32.9 bits (75), Expect = 0.84
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 465 FGTPEQLKYLVDECHKAGL 483
GT E K LV HK G+
Sbjct: 72 LGTEEDFKELVKAAHKRGI 90
Score = 32.9 bits (75), Expect = 0.84
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 484 FGTPEQLKYLVDECHKAGL 502
GT E K LV HK G+
Sbjct: 72 LGTEEDFKELVKAAHKRGI 90
Score = 32.9 bits (75), Expect = 0.84
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 503 FGTPEQLKYLVDECHKAGL 521
GT E K LV HK G+
Sbjct: 72 LGTEEDFKELVKAAHKRGI 90
Score = 32.9 bits (75), Expect = 0.84
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 522 FGTPEQLKYLVDECHKAGL 540
GT E K LV HK G+
Sbjct: 72 LGTEEDFKELVKAAHKRGI 90
Score = 32.9 bits (75), Expect = 0.84
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 541 FGTPEQLKYLVDECHKAGL 559
GT E K LV HK G+
Sbjct: 72 LGTEEDFKELVKAAHKRGI 90
Score = 32.9 bits (75), Expect = 0.84
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 560 FGTPEQLKYLVDECHKAGL 578
GT E K LV HK G+
Sbjct: 72 LGTEEDFKELVKAAHKRGI 90
Score = 32.9 bits (75), Expect = 0.84
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 579 FGTPEQLKYLVDECHKAGL 597
GT E K LV HK G+
Sbjct: 72 LGTEEDFKELVKAAHKRGI 90
Score = 32.9 bits (75), Expect = 0.84
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 598 FGTPEQLKYLVDECHKAGL 616
GT E K LV HK G+
Sbjct: 72 LGTEEDFKELVKAAHKRGI 90
Score = 32.9 bits (75), Expect = 0.84
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 617 FGTPEQLKYLVDECHKAGL 635
GT E K LV HK G+
Sbjct: 72 LGTEEDFKELVKAAHKRGI 90
Score = 32.9 bits (75), Expect = 0.84
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 636 FGTPEQLKYLVDECHKAGL 654
GT E K LV HK G+
Sbjct: 72 LGTEEDFKELVKAAHKRGI 90
Score = 32.9 bits (75), Expect = 0.84
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 655 FGTPEQLKYLVDECHKAGL 673
GT E K LV HK G+
Sbjct: 72 LGTEEDFKELVKAAHKRGI 90
Score = 32.9 bits (75), Expect = 0.84
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 674 FGTPEQLKYLVDECHKAGL 692
GT E K LV HK G+
Sbjct: 72 LGTEEDFKELVKAAHKRGI 90
Score = 32.9 bits (75), Expect = 0.84
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 693 FGTPEQLKYLVDECHKAGL 711
GT E K LV HK G+
Sbjct: 72 LGTEEDFKELVKAAHKRGI 90
Score = 32.9 bits (75), Expect = 0.84
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 712 FGTPEQLKYLVDECHKAGL 730
GT E K LV HK G+
Sbjct: 72 LGTEEDFKELVKAAHKRGI 90
Score = 32.9 bits (75), Expect = 0.84
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 731 FGTPEQLKYLVDECHKAGL 749
GT E K LV HK G+
Sbjct: 72 LGTEEDFKELVKAAHKRGI 90
Score = 32.9 bits (75), Expect = 0.84
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 750 FGTPEQLKYLVDECHKAGL 768
GT E K LV HK G+
Sbjct: 72 LGTEEDFKELVKAAHKRGI 90
>gnl|CDD|214758 smart00642, Aamy, Alpha-amylase domain.
Length = 166
Score = 46.2 bits (110), Expect = 2e-05
Identities = 30/108 (27%), Positives = 41/108 (37%), Gaps = 17/108 (15%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092
FGT E K LVD H G+ V+LDVV +H S DG D A F +G
Sbjct: 66 FGTMEDFKELVDAAHARGIKVILDVVINHTS----DGGFRLD--AAKFPLNGSA------ 113
Query: 1093 DSRLFNYSEIEVLR----FLLSNLRWYLDEYQFDGFRFDGVTSMLYHN 1136
L ++ + +L ++NL E DG +
Sbjct: 114 -FSLLDFFALALLLKILGIGMTNLPIIDYEQYRDGGGDPNMWWDGTCQ 160
Score = 38.5 bits (90), Expect = 0.007
Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 9/68 (13%)
Query: 1012 EKFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC--HKAGLYVLLDVVHSHASKNVLDG 1069
+FGT E K LVD H G +K ++D H + LD + +
Sbjct: 64 PRFGTMEDFKELVDAAHARG-------IKVILDVVINHTSDGGFRLDAAKFPLNGSAFSL 116
Query: 1070 LNEFDGTQ 1077
L+ F
Sbjct: 117 LDFFALAL 124
Score = 35.8 bits (83), Expect = 0.060
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 7/61 (11%)
Query: 769 FGTPEQLKYLVDECHKAGLLCFMHVV---CAAG----DFNNWNREEFAYKKLDFGKWELV 821
FGT E K LVD H G+ + VV + G D + A+ LDF L+
Sbjct: 66 FGTMEDFKELVDAAHARGIKVILDVVINHTSDGGFRLDAAKFPLNGSAFSLLDFFALALL 125
Query: 822 L 822
L
Sbjct: 126 L 126
Score = 32.7 bits (75), Expect = 0.66
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 117 YILTGVFGTPEQLKYLVDECHKAGL 141
+ FGT E K LVD H G+
Sbjct: 60 KQIDPRFGTMEDFKELVDAAHARGI 84
Score = 32.3 bits (74), Expect = 0.79
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 142 FGTPEQLKYLVDECHKAGL 160
FGT E K LVD H G+
Sbjct: 66 FGTMEDFKELVDAAHARGI 84
Score = 32.3 bits (74), Expect = 0.79
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 161 FGTPEQLKYLVDECHKAGL 179
FGT E K LVD H G+
Sbjct: 66 FGTMEDFKELVDAAHARGI 84
Score = 32.3 bits (74), Expect = 0.79
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 180 FGTPEQLKYLVDECHKAGL 198
FGT E K LVD H G+
Sbjct: 66 FGTMEDFKELVDAAHARGI 84
Score = 32.3 bits (74), Expect = 0.79
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 199 FGTPEQLKYLVDECHKAGL 217
FGT E K LVD H G+
Sbjct: 66 FGTMEDFKELVDAAHARGI 84
Score = 32.3 bits (74), Expect = 0.79
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 218 FGTPEQLKYLVDECHKAGL 236
FGT E K LVD H G+
Sbjct: 66 FGTMEDFKELVDAAHARGI 84
Score = 32.3 bits (74), Expect = 0.79
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 237 FGTPEQLKYLVDECHKAGL 255
FGT E K LVD H G+
Sbjct: 66 FGTMEDFKELVDAAHARGI 84
Score = 32.3 bits (74), Expect = 0.79
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 256 FGTPEQLKYLVDECHKAGL 274
FGT E K LVD H G+
Sbjct: 66 FGTMEDFKELVDAAHARGI 84
Score = 32.3 bits (74), Expect = 0.79
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 275 FGTPEQLKYLVDECHKAGL 293
FGT E K LVD H G+
Sbjct: 66 FGTMEDFKELVDAAHARGI 84
Score = 32.3 bits (74), Expect = 0.79
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 294 FGTPEQLKYLVDECHKAGL 312
FGT E K LVD H G+
Sbjct: 66 FGTMEDFKELVDAAHARGI 84
Score = 32.3 bits (74), Expect = 0.79
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 313 FGTPEQLKYLVDECHKAGL 331
FGT E K LVD H G+
Sbjct: 66 FGTMEDFKELVDAAHARGI 84
Score = 32.3 bits (74), Expect = 0.79
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 332 FGTPEQLKYLVDECHKAGL 350
FGT E K LVD H G+
Sbjct: 66 FGTMEDFKELVDAAHARGI 84
Score = 32.3 bits (74), Expect = 0.79
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 351 FGTPEQLKYLVDECHKAGL 369
FGT E K LVD H G+
Sbjct: 66 FGTMEDFKELVDAAHARGI 84
Score = 32.3 bits (74), Expect = 0.79
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 370 FGTPEQLKYLVDECHKAGL 388
FGT E K LVD H G+
Sbjct: 66 FGTMEDFKELVDAAHARGI 84
Score = 32.3 bits (74), Expect = 0.79
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 389 FGTPEQLKYLVDECHKAGL 407
FGT E K LVD H G+
Sbjct: 66 FGTMEDFKELVDAAHARGI 84
Score = 32.3 bits (74), Expect = 0.79
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 408 FGTPEQLKYLVDECHKAGL 426
FGT E K LVD H G+
Sbjct: 66 FGTMEDFKELVDAAHARGI 84
Score = 32.3 bits (74), Expect = 0.79
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 427 FGTPEQLKYLVDECHKAGL 445
FGT E K LVD H G+
Sbjct: 66 FGTMEDFKELVDAAHARGI 84
Score = 32.3 bits (74), Expect = 0.79
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 446 FGTPEQLKYLVDECHKAGL 464
FGT E K LVD H G+
Sbjct: 66 FGTMEDFKELVDAAHARGI 84
Score = 32.3 bits (74), Expect = 0.79
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 465 FGTPEQLKYLVDECHKAGL 483
FGT E K LVD H G+
Sbjct: 66 FGTMEDFKELVDAAHARGI 84
Score = 32.3 bits (74), Expect = 0.79
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 484 FGTPEQLKYLVDECHKAGL 502
FGT E K LVD H G+
Sbjct: 66 FGTMEDFKELVDAAHARGI 84
Score = 32.3 bits (74), Expect = 0.79
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 503 FGTPEQLKYLVDECHKAGL 521
FGT E K LVD H G+
Sbjct: 66 FGTMEDFKELVDAAHARGI 84
Score = 32.3 bits (74), Expect = 0.79
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 522 FGTPEQLKYLVDECHKAGL 540
FGT E K LVD H G+
Sbjct: 66 FGTMEDFKELVDAAHARGI 84
Score = 32.3 bits (74), Expect = 0.79
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 541 FGTPEQLKYLVDECHKAGL 559
FGT E K LVD H G+
Sbjct: 66 FGTMEDFKELVDAAHARGI 84
Score = 32.3 bits (74), Expect = 0.79
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 560 FGTPEQLKYLVDECHKAGL 578
FGT E K LVD H G+
Sbjct: 66 FGTMEDFKELVDAAHARGI 84
Score = 32.3 bits (74), Expect = 0.79
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 579 FGTPEQLKYLVDECHKAGL 597
FGT E K LVD H G+
Sbjct: 66 FGTMEDFKELVDAAHARGI 84
Score = 32.3 bits (74), Expect = 0.79
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 598 FGTPEQLKYLVDECHKAGL 616
FGT E K LVD H G+
Sbjct: 66 FGTMEDFKELVDAAHARGI 84
Score = 32.3 bits (74), Expect = 0.79
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 617 FGTPEQLKYLVDECHKAGL 635
FGT E K LVD H G+
Sbjct: 66 FGTMEDFKELVDAAHARGI 84
Score = 32.3 bits (74), Expect = 0.79
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 636 FGTPEQLKYLVDECHKAGL 654
FGT E K LVD H G+
Sbjct: 66 FGTMEDFKELVDAAHARGI 84
Score = 32.3 bits (74), Expect = 0.79
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 655 FGTPEQLKYLVDECHKAGL 673
FGT E K LVD H G+
Sbjct: 66 FGTMEDFKELVDAAHARGI 84
Score = 32.3 bits (74), Expect = 0.79
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 674 FGTPEQLKYLVDECHKAGL 692
FGT E K LVD H G+
Sbjct: 66 FGTMEDFKELVDAAHARGI 84
Score = 32.3 bits (74), Expect = 0.79
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 693 FGTPEQLKYLVDECHKAGL 711
FGT E K LVD H G+
Sbjct: 66 FGTMEDFKELVDAAHARGI 84
Score = 32.3 bits (74), Expect = 0.79
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 712 FGTPEQLKYLVDECHKAGL 730
FGT E K LVD H G+
Sbjct: 66 FGTMEDFKELVDAAHARGI 84
Score = 32.3 bits (74), Expect = 0.79
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 731 FGTPEQLKYLVDECHKAGL 749
FGT E K LVD H G+
Sbjct: 66 FGTMEDFKELVDAAHARGI 84
Score = 32.3 bits (74), Expect = 0.79
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 750 FGTPEQLKYLVDECHKAGL 768
FGT E K LVD H G+
Sbjct: 66 FGTMEDFKELVDAAHARGI 84
>gnl|CDD|223443 COG0366, AmyA, Glycosidases [Carbohydrate transport and metabolism].
Length = 505
Score = 47.7 bits (113), Expect = 3e-05
Identities = 41/186 (22%), Positives = 67/186 (36%), Gaps = 52/186 (27%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS------KNVLDGLNEFDGTQACFFH---- 1082
FGT E K LV+E HK G+ V+LD+V +H S K ++ ++
Sbjct: 73 FGTEEDFKELVEEAHKRGIKVILDLVFNHTSDEHPWFKEARSSKPNP--KRSDYYIWRDP 130
Query: 1083 --------------DGPRGTHPLWDSRL----------FNYSEIEVLRFLLSNLRWYLDE 1118
G T N+ EV LL ++++LD
Sbjct: 131 DPDGTPPNNWFSVFGGDAWTWGNTGEYYLHLFSSEQPDLNWENPEVREELLDVVKFWLD- 189
Query: 1119 YQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEII 1178
DGFR D H + FGL + L +L +++L ++ P+++
Sbjct: 190 KGVDGFRLDAAK---------------HISKDFGLPPSEENLTFLEEIHEYLREENPDVL 234
Query: 1179 TIAEDV 1184
E +
Sbjct: 235 IYGEAI 240
>gnl|CDD|233730 TIGR02104, pulA_typeI, pullulanase, type I. Pullulan is an unusual,
industrially important polysaccharide in which short
alpha-1,4 chains (maltotriose) are connected in alpha-1,6
linkages. Enzymes that cleave alpha-1,6 linkages in
pullulan and release maltotriose are called pullulanases
although pullulan itself may not be the natural
substrate. This family consists of pullulanases related
to the subfamilies described in TIGR02102 and TIGR02103
but having a different domain architecture with shorter
sequences. Members are called type I pullulanases.
Length = 605
Score = 47.7 bits (114), Expect = 4e-05
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Query: 1038 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGT-QACFFHDGPRGTHPLWDSRL 1096
+LK ++ H+ G+ V++DVV++H + F+ T ++ GT + +
Sbjct: 230 ELKQMIQALHENGIRVIMDVVYNHTYSRE---ESPFEKTVPGYYYRYNEDGT-LSNGTGV 285
Query: 1097 FN--YSEIEVLR-FLLSNLRWYLDEYQFDGFRFD 1127
N SE E++R F++ ++ +++ EY DGFRFD
Sbjct: 286 GNDTASEREMMRKFIVDSVLYWVKEYNIDGFRFD 319
>gnl|CDD|200489 cd11352, AmyAc_5, Alpha amylase catalytic domain found in an
uncharacterized protein family. The Alpha-amylase family
comprises the largest family of glycoside hydrolases
(GH), with the majority of enzymes acting on starch,
glycogen, and related oligo- and polysaccharides. These
proteins catalyze the transformation of alpha-1,4 and
alpha-1,6 glucosidic linkages with retention of the
anomeric center. The protein is described as having 3
domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a
loop between the beta 3 strand and alpha 3 helix of A; C
is the C-terminal extension characterized by a Greek key.
The majority of the enzymes have an active site cleft
found between domains A and B where a triad of catalytic
residues (Asp, Glu and Asp) performs catalysis. Other
members of this family have lost the catalytic activity
as in the case of the human 4F2hc, or only have 2
residues that serve as the catalytic nucleophile and the
acid/base, such as Thermus A4 beta-galactosidase with 2
Glu residues (GH42) and human alpha-galactosidase with 2
Asp residues (GH31). The family members are quite
extensive and include: alpha amylase,
maltosyltransferase, cyclodextrin glycotransferase,
maltogenic amylase, neopullulanase, isoamylase,
1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 443
Score = 45.8 bits (109), Expect = 1e-04
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN 1065
FGT E L+ LVD H G+YV+LD++ +H+
Sbjct: 97 FGTREDLRDLVDAAHARGIYVILDIILNHSGDV 129
Score = 32.7 bits (75), Expect = 1.5
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 769 FGTPEQLKYLVDECHKAGLLCFMHVVCA-AGDFNNW 803
FGT E L+ LVD H G+ + ++ +GD +
Sbjct: 97 FGTREDLRDLVDAAHARGIYVILDIILNHSGD--VF 130
>gnl|CDD|199885 cd02855, E_set_GBE_prok_N, N-terminal Early set domain associated
with the catalytic domain of prokaryotic glycogen
branching enzyme. This subfamily is composed of
predominantly prokaryotic 1,4 alpha glucan branching
enzymes, also called glycogen branching enzymes. E or
"early" set domains are associated with the catalytic
domain of glycogen branching enzymes at the N-terminal
end. Glycogen branching enzyme catalyzes the formation
of alpha-1,6 branch points in either glycogen or starch
by cleavage of the alpha-1,4 glucosidic linkage,
yielding a non-reducing end oligosaccharide chain, as
well as the subsequent attachment of short glucosyl
chains to the alpha-1,6 position. By increasing the
number of non-reducing ends, glycogen is more reactive
to synthesis and digestion as well as being more
soluble. The N-terminal domain of the 1,4 alpha glucan
branching enzyme may be related to the immunoglobulin
and/or fibronectin type III superfamilies. These domains
are associated with different types of catalytic domains
at either the N-terminal or C-terminal end and may be
involved in homodimeric/tetrameric/dodecameric
interactions. Members of this family include members of
the alpha amylase family, sialidase, galactose oxidase,
cellulase, cellulose, hyaluronate lyase, chitobiase, and
chitinase, among others.
Length = 105
Score = 41.3 bits (98), Expect = 2e-04
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 794 VCAAGDFNNWNREEFAYKKL-DFGKWELVLPPNPDGSCKLTHLSQVKLVVRNQHGHLLDR 852
V GDFN+W+ +++ D G WEL +P +G K + G +L +
Sbjct: 33 VSVVGDFNDWDGRAHPMRRIGDSGVWELFIPGAKEGDL-------YKYEIETADGEVLLK 85
Query: 853 LSPWATYVTEPP 864
P+A Y P
Sbjct: 86 ADPYAFYAELRP 97
Score = 28.6 bits (65), Expect = 7.6
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 61 SYNKYGIHVQADNSVRCFE---WAPSAQQLYLTG 91
+Y K G H + V WAP+A+++ + G
Sbjct: 4 AYEKLGAHPVEVDGVGGVRFRVWAPNAKRVSVVG 37
>gnl|CDD|131155 TIGR02100, glgX_debranch, glycogen debranching enzyme GlgX. This
family consists of the GlgX protein from the E. coli
glycogen operon and probable equivalogs from other
prokaryotic species. GlgX is not required for glycogen
biosynthesis, but instead acts as a debranching enzyme
for glycogen catabolism. This model distinguishes GlgX
from pullanases and other related proteins that also
operate on alpha-1,6-glycosidic linkages. In the wide
band between the trusted and noise cutoffs are
functionally similar enzymes, mostly from plants, that
act similarly but usually are termed isoamylase [Energy
metabolism, Biosynthesis and degradation of
polysaccharides].
Length = 688
Score = 44.3 bits (105), Expect = 4e-04
Identities = 32/116 (27%), Positives = 45/116 (38%), Gaps = 38/116 (32%)
Query: 1034 GTPEQLKYLVDECHKAGLYVLLDVVHSH-ASKNVLDGLNEFDGTQACFFHDGP----RG- 1087
G + K +V H AG+ V+LDVV++H A N GP RG
Sbjct: 242 GQVAEFKTMVRALHDAGIEVILDVVYNHTAEGN----------------ELGPTLSFRGI 285
Query: 1088 -------THPLWDSRLFNY---------SEIEVLRFLLSNLRWYLDEYQFDGFRFD 1127
P N S VL+ ++ +LR+++ E DGFRFD
Sbjct: 286 DNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQMVMDSLRYWVTEMHVDGFRFD 341
>gnl|CDD|200455 cd11316, AmyAc_bac2_AmyA, Alpha amylase catalytic domain found in
bacterial Alpha-amylases (also called
1,4-alpha-D-glucan-4-glucanohydrolase). AmyA (EC
3.2.1.1) catalyzes the hydrolysis of alpha-(1,4)
glycosidic linkages of glycogen, starch, related
polysaccharides, and some oligosaccharides. This group
includes Chloroflexi, Dictyoglomi, and Fusobacteria. The
Alpha-amylase family comprises the largest family of
glycoside hydrolases (GH), with the majority of enzymes
acting on starch, glycogen, and related oligo- and
polysaccharides. These proteins catalyze the
transformation of alpha-1,4 and alpha-1,6 glucosidic
linkages with retention of the anomeric center. The
protein is described as having 3 domains: A, B, C. A is a
(beta/alpha) 8-barrel; B is a loop between the beta 3
strand and alpha 3 helix of A; C is the C-terminal
extension characterized by a Greek key. The majority of
the enzymes have an active site cleft found between
domains A and B where a triad of catalytic residues (Asp,
Glu and Asp) performs catalysis. Other members of this
family have lost the catalytic activity as in the case of
the human 4F2hc, or only have 2 residues that serve as
the catalytic nucleophile and the acid/base, such as
Thermus A4 beta-galactosidase with 2 Glu residues (GH42)
and human alpha-galactosidase with 2 Asp residues (GH31).
The family members are quite extensive and include: alpha
amylase, maltosyltransferase, cyclodextrin
glycotransferase, maltogenic amylase, neopullulanase,
isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 403
Score = 44.1 bits (105), Expect = 4e-04
Identities = 28/131 (21%), Positives = 47/131 (35%), Gaps = 27/131 (20%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLDGLNEFDGTQACF--FHDGPRG 1087
+GT E + L+ E HK G+ V++D+V +H S + + D + + D G
Sbjct: 66 YGTMEDFERLIAEAHKRGIKVIIDLVINHTSSEHPWFQEAASSPDSPYRDYYIWADDDPG 125
Query: 1088 THPLWDSRL--------------------FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 1127
W + N V + +++LD+ DGFR D
Sbjct: 126 GWSSWGGNVWHKAGDGGYYYGAFWSGMPDLNLDNPAVREEIKKIAKFWLDK-GVDGFRLD 184
Query: 1128 GVTSMLYHNHG 1138
+Y N
Sbjct: 185 AAK-HIYENGE 194
>gnl|CDD|200471 cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalytic domain found in
oligo-1,6-glucosidase (also called isomaltase;
sucrase-isomaltase; alpha-limit dextrinase), trehalose
synthase (also called maltose
alpha-D-glucosyltransferase), and related proteins.
Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the
alpha-1,6-glucosidic linkage of isomaltooligosaccharides,
pannose, and dextran. Unlike alpha-1,4-glucosidases (EC
3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic
bonds of maltosaccharides. Trehalose synthase (EC
5.4.99.16) catalyzes the isomerization of maltose to
produce trehalulose. The Alpha-amylase family comprises
the largest family of glycoside hydrolases (GH), with the
majority of enzymes acting on starch, glycogen, and
related oligo- and polysaccharides. These proteins
catalyze the transformation of alpha-1,4 and alpha-1,6
glucosidic linkages with retention of the anomeric
center. The protein is described as having 3 domains: A,
B, C. A is a (beta/alpha) 8-barrel; B is a loop between
the beta 3 strand and alpha 3 helix of A; C is the
C-terminal extension characterized by a Greek key. The
majority of the enzymes have an active site cleft found
between domains A and B where a triad of catalytic
residues (Asp, Glu and Asp) performs catalysis. Other
members of this family have lost the catalytic activity
as in the case of the human 4F2hc, or only have 2
residues that serve as the catalytic nucleophile and the
acid/base, such as Thermus A4 beta-galactosidase with 2
Glu residues (GH42) and human alpha-galactosidase with 2
Asp residues (GH31). The family members are quite
extensive and include: alpha amylase,
maltosyltransferase, cyclodextrin glycotransferase,
maltogenic amylase, neopullulanase, isoamylase,
1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 481
Score = 44.2 bits (105), Expect = 4e-04
Identities = 37/135 (27%), Positives = 46/135 (34%), Gaps = 40/135 (29%)
Query: 1032 LFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS------KNVLDGLNEFDGTQACFFHDG- 1084
LFGT LV H+ GL V++D+V +H S + L F DG
Sbjct: 71 LFGTLADFDALVAAAHELGLRVIVDIVPNHTSDQHPWFQAALAAGPGSPERARYIFRDGR 130
Query: 1085 -PRGTHPL--WDSR----------------------LF-------NYSEIEVLRFLLSNL 1112
P G P W S LF N+ EV L
Sbjct: 131 GPDGELPPNNWQSVFGGPAWTRVTEPDGTDGQWYLHLFAPEQPDLNWDNPEVRAEFEDVL 190
Query: 1113 RWYLDEYQFDGFRFD 1127
R++LD DGFR D
Sbjct: 191 RFWLDR-GVDGFRID 204
>gnl|CDD|200453 cd11314, AmyAc_arch_bac_plant_AmyA, Alpha amylase catalytic domain
found in archaeal, bacterial, and plant Alpha-amylases
(also called 1,4-alpha-D-glucan-4-glucanohydrolase).
AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4)
glycosidic linkages of glycogen, starch, related
polysaccharides, and some oligosaccharides. This group
includes AmyA from bacteria, archaea, water fleas, and
plants. The Alpha-amylase family comprises the largest
family of glycoside hydrolases (GH), with the majority of
enzymes acting on starch, glycogen, and related oligo-
and polysaccharides. These proteins catalyze the
transformation of alpha-1,4 and alpha-1,6 glucosidic
linkages with retention of the anomeric center. The
protein is described as having 3 domains: A, B, C. A is a
(beta/alpha) 8-barrel; B is a loop between the beta 3
strand and alpha 3 helix of A; C is the C-terminal
extension characterized by a Greek key. The majority of
the enzymes have an active site cleft found between
domains A and B where a triad of catalytic residues (Asp,
Glu and Asp) performs catalysis. Other members of this
family have lost the catalytic activity as in the case of
the human 4F2hc, or only have 2 residues that serve as
the catalytic nucleophile and the acid/base, such as
Thermus A4 beta-galactosidase with 2 Glu residues (GH42)
and human alpha-galactosidase with 2 Asp residues (GH31).
The family members are quite extensive and include: alpha
amylase, maltosyltransferase, cyclodextrin
glycotransferase, maltogenic amylase, neopullulanase,
isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 302
Score = 43.4 bits (103), Expect = 5e-04
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 20/97 (20%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092
+G+ +L+ L+ H G+ V+ D+V +H ++ D G F P
Sbjct: 63 YGSEAELRSLIAALHAKGIKVIADIVINH--RSGPD-----TGE---DFGGAP------- 105
Query: 1093 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGV 1129
D +++ EV L + L W ++ FDG+RFD V
Sbjct: 106 D---LDHTNPEVQNDLKAWLNWLKNDIGFDGWRFDFV 139
>gnl|CDD|200480 cd11341, AmyAc_Pullulanase_LD-like, Alpha amylase catalytic domain
found in Pullulanase (also called dextrinase;
alpha-dextrin endo-1,6-alpha glucosidase), limit
dextrinase, and related proteins. Pullulanase is an
enzyme with action similar to that of isoamylase; it
cleaves 1,6-alpha-glucosidic linkages in pullulan,
amylopectin, and glycogen, and in alpha-and beta-amylase
limit-dextrins of amylopectin and glycogen. Pullulanases
are very similar to limit dextrinases, although they
differ in their action on glycogen and the rate of
hydrolysis of limit dextrins. The Alpha-amylase family
comprises the largest family of glycoside hydrolases
(GH), with the majority of enzymes acting on starch,
glycogen, and related oligo- and polysaccharides. These
proteins catalyze the transformation of alpha-1,4 and
alpha-1,6 glucosidic linkages with retention of the
anomeric center. The protein is described as having 3
domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a
loop between the beta 3 strand and alpha 3 helix of A; C
is the C-terminal extension characterized by a Greek key.
The majority of the enzymes have an active site cleft
found between domains A and B where a triad of catalytic
residues (Asp, Glu and Asp) performs catalysis. Other
members of this family have lost the catalytic activity
as in the case of the human 4F2hc, or only have 2
residues that serve as the catalytic nucleophile and the
acid/base, such as Thermus A4 beta-galactosidase with 2
Glu residues (GH42) and human alpha-galactosidase with 2
Asp residues (GH31). The family members are quite
extensive and include: alpha amylase,
maltosyltransferase, cyclodextrin glycotransferase,
maltogenic amylase, neopullulanase, isoamylase,
1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 406
Score = 42.9 bits (102), Expect = 8e-04
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 34/106 (32%)
Query: 1039 LKYLVDECHKAGLYVLLDVVHSH---ASKNVLDGL--------NEFDGTQACFFHDGPRG 1087
K +V HK G+ V++DVV++H + + + + N DG F +G
Sbjct: 109 FKEMVQALHKNGIRVIMDVVYNHTYDSENSPFEKIVPGYYYRYNA-DGG----FSNGSGC 163
Query: 1088 ------THPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 1127
P+ V ++++ +L+++ EY+ DGFRFD
Sbjct: 164 GNDTASERPM------------VRKYIIDSLKYWAKEYKIDGFRFD 197
>gnl|CDD|200454 cd11315, AmyAc_bac1_AmyA, Alpha amylase catalytic domain found in
bacterial Alpha-amylases (also called
1,4-alpha-D-glucan-4-glucanohydrolase). AmyA (EC
3.2.1.1) catalyzes the hydrolysis of alpha-(1,4)
glycosidic linkages of glycogen, starch, related
polysaccharides, and some oligosaccharides. This group
includes Firmicutes, Proteobacteria, Actinobacteria, and
Cyanobacteria. The Alpha-amylase family comprises the
largest family of glycoside hydrolases (GH), with the
majority of enzymes acting on starch, glycogen, and
related oligo- and polysaccharides. These proteins
catalyze the transformation of alpha-1,4 and alpha-1,6
glucosidic linkages with retention of the anomeric
center. The protein is described as having 3 domains: A,
B, C. A is a (beta/alpha) 8-barrel; B is a loop between
the beta 3 strand and alpha 3 helix of A; C is the
C-terminal extension characterized by a Greek key. The
majority of the enzymes have an active site cleft found
between domains A and B where a triad of catalytic
residues (Asp, Glu and Asp) performs catalysis. Other
members of this family have lost the catalytic activity
as in the case of the human 4F2hc, or only have 2
residues that serve as the catalytic nucleophile and the
acid/base, such as Thermus A4 beta-galactosidase with 2
Glu residues (GH42) and human alpha-galactosidase with 2
Asp residues (GH31). The family members are quite
extensive and include: alpha amylase,
maltosyltransferase, cyclodextrin glycotransferase,
maltogenic amylase, neopullulanase, isoamylase,
1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 352
Score = 42.7 bits (101), Expect = 9e-04
Identities = 26/115 (22%), Positives = 40/115 (34%), Gaps = 27/115 (23%)
Query: 1034 GTPEQLKYLVDECHKAGLYVLLDVVHSH--ASKNVLDGLNE--FDGTQACFFHDGPRGTH 1089
GT + K L HK G+ +++DVV +H + ++ L D G
Sbjct: 65 GTEDDFKALCAAAHKYGIKIIVDVVFNHMANEGSAIEDLWYPSADIELFSPEDFHGNGGI 124
Query: 1090 PLWDSRLFNYSEIEVLRFLLSNL------RWYLDEYQ-----------FDGFRFD 1127
W+ R +V + L L + + Q DGFRFD
Sbjct: 125 SNWNDRW------QVTQGRLGGLPDLNTENPAVQQQQKAYLKALVALGVDGFRFD 173
>gnl|CDD|236543 PRK09505, malS, alpha-amylase; Reviewed.
Length = 683
Score = 43.1 bits (102), Expect = 0.001
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF 1073
GT L+ LVDE H+ G+ +L DVV +H L + EF
Sbjct: 288 MGTEADLRTLVDEAHQRGIRILFDVVMNHTGYATLADMQEF 328
>gnl|CDD|200486 cd11348, AmyAc_2, Alpha amylase catalytic domain found in an
uncharacterized protein family. The Alpha-amylase family
comprises the largest family of glycoside hydrolases
(GH), with the majority of enzymes acting on starch,
glycogen, and related oligo- and polysaccharides. These
proteins catalyze the transformation of alpha-1,4 and
alpha-1,6 glucosidic linkages with retention of the
anomeric center. The protein is described as having 3
domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a
loop between the beta 3 strand and alpha 3 helix of A; C
is the C-terminal extension characterized by a Greek key.
The majority of the enzymes have an active site cleft
found between domains A and B where a triad of catalytic
residues (Asp, Glu and Asp) performs catalysis. Other
members of this family have lost the catalytic activity
as in the case of the human 4F2hc, or only have 2
residues that serve as the catalytic nucleophile and the
acid/base, such as Thermus A4 beta-galactosidase with 2
Glu residues (GH42) and human alpha-galactosidase with 2
Asp residues (GH31). The catalytic triad (DED) is not
present here. The family members are quite extensive and
include: alpha amylase, maltosyltransferase, cyclodextrin
glycotransferase, maltogenic amylase, neopullulanase,
isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 429
Score = 42.3 bits (100), Expect = 0.001
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 1063
+GT E L L DE HK G++VLLD+V H S
Sbjct: 66 YGTNEDLVRLFDEAHKRGIHVLLDLVPGHTS 96
>gnl|CDD|200469 cd11330, AmyAc_OligoGlu, Alpha amylase catalytic domain found in
oligo-1,6-glucosidase (also called isomaltase;
sucrase-isomaltase; alpha-limit dextrinase) and related
proteins. Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes
the alpha-1,6-glucosidic linkage of
isomalto-oligosaccharides, pannose, and dextran. Unlike
alpha-1,4-glucosidases (EC 3.2.1.20), it fails to
hydrolyze the alpha-1,4-glucosidic bonds of
maltosaccharides. The Alpha-amylase family comprises the
largest family of glycoside hydrolases (GH), with the
majority of enzymes acting on starch, glycogen, and
related oligo- and polysaccharides. These proteins
catalyze the transformation of alpha-1,4 and alpha-1,6
glucosidic linkages with retention of the anomeric
center. The protein is described as having 3 domains: A,
B, C. A is a (beta/alpha) 8-barrel; B is a loop between
the beta 3 strand and alpha 3 helix of A; C is the
C-terminal extension characterized by a Greek key. The
majority of the enzymes have an active site cleft found
between domains A and B where a triad of catalytic
residues (Asp, Glu and Asp) performs catalysis. Other
members of this family have lost the catalytic activity
as in the case of the human 4F2hc, or only have 2
residues that serve as the catalytic nucleophile and the
acid/base, such as Thermus A4 beta-galactosidase with 2
Glu residues (GH42) and human alpha-galactosidase with 2
Asp residues (GH31). The family members are quite
extensive and include: alpha amylase,
maltosyltransferase, cyclodextrin glycotransferase,
maltogenic amylase, neopullulanase, isoamylase,
1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 472
Score = 41.5 bits (98), Expect = 0.002
Identities = 37/140 (26%), Positives = 49/140 (35%), Gaps = 43/140 (30%)
Query: 1032 LFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS-------KNVLDGLNEF----------- 1073
LFGT + LV H GL V++D V SH S ++ N
Sbjct: 71 LFGTLDDFDRLVARAHALGLKVMIDQVLSHTSDQHPWFEESRQSRDNPKADWYVWADPKP 130
Query: 1074 DGT-----QACFFHDGPRGTHPLWDSRL--------------FNYSEIEVLRFLLSNLRW 1114
DG+ + F G WD R N+ EV LL R+
Sbjct: 131 DGSPPNNWLSVF--GGSAWQ---WDPRRGQYYLHNFLPSQPDLNFHNPEVQDALLDVARF 185
Query: 1115 YLDEYQFDGFRFDGVTSMLY 1134
+LD DGFR D V ++
Sbjct: 186 WLDR-GVDGFRLDAVNFYMH 204
>gnl|CDD|235152 PRK03705, PRK03705, glycogen debranching enzyme; Provisional.
Length = 658
Score = 41.6 bits (98), Expect = 0.003
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 1043 VDECHKAGLYVLLDVVHSHASKNVLDG----LNEFDGTQACFFHDGPRGTHPLWDS--RL 1096
V HKAG+ V+LDVV +H+++ LDG L D ++ G + W
Sbjct: 248 VKALHKAGIEVILDVVFNHSAELDLDGPTLSLRGID--NRSYYWIREDGDYHNWTGCGNT 305
Query: 1097 FNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSM 1132
N S V+ + + LR++++ DGFRFD T +
Sbjct: 306 LNLSHPAVVDWAIDCLRYWVETCHVDGFRFDLATVL 341
>gnl|CDD|200479 cd11340, AmyAc_bac_CMD_like_3, Alpha amylase catalytic domain found
in bacterial cyclomaltodextrinases and related proteins.
Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase
(NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC
3.2.1.133) catalyze the hydrolysis of alpha-(1,4)
glycosidic linkages on a number of substrates including
cyclomaltodextrins (CDs), pullulan, and starch. These
enzymes hydrolyze CDs and starch to maltose and pullulan
to panose by cleavage of alpha-1,4 glycosidic bonds
whereas alpha-amylases essentially lack activity on CDs
and pullulan. They also catalyze transglycosylation of
oligosaccharides to the C3-, C4- or C6-hydroxyl groups of
various acceptor sugar molecules. Since these proteins
are nearly indistinguishable from each other, they are
referred to as cyclomaltodextrinases (CMDs). This group
of CMDs is bacterial. The Alpha-amylase family comprises
the largest family of glycoside hydrolases (GH), with the
majority of enzymes acting on starch, glycogen, and
related oligo- and polysaccharides. These proteins
catalyze the transformation of alpha-1,4 and alpha-1,6
glucosidic linkages with retention of the anomeric
center. The protein is described as having 3 domains: A,
B, C. A is a (beta/alpha) 8-barrel; B is a loop between
the beta 3 strand and alpha 3 helix of A; C is the
C-terminal extension characterized by a Greek key. The
majority of the enzymes have an active site cleft found
between domains A and B where a triad of catalytic
residues (Asp, Glu and Asp) performs catalysis. Other
members of this family have lost the catalytic activity
as in the case of the human 4F2hc, or only have 2
residues that serve as the catalytic nucleophile and the
acid/base, such as Thermus A4 beta-galactosidase with 2
Glu residues (GH42) and human alpha-galactosidase with 2
Asp residues (GH31). The family members are quite
extensive and include: alpha amylase,
maltosyltransferase, cyclodextrin glycotransferase,
maltogenic amylase, neopullulanase, isoamylase,
1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 407
Score = 40.7 bits (96), Expect = 0.004
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSH 1061
FG+ E K LV + H G+ +++D+V +H
Sbjct: 92 FGSNEDYKELVSKAHARGMKLIMDMVPNH 120
>gnl|CDD|200490 cd11353, AmyAc_euk_bac_CMD_like, Alpha amylase catalytic domain found
in eukaryotic and bacterial cyclomaltodextrinases and
related proteins. Cyclomaltodextrinase (CDase;
EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and
maltogenic amylase (MA; EC 3.2.1.133) catalyze the
hydrolysis of alpha-(1,4) glycosidic linkages on a number
of substrates including cyclomaltodextrins (CDs),
pullulan, and starch. These enzymes hydrolyze CDs and
starch to maltose and pullulan to panose by cleavage of
alpha-1,4 glycosidic bonds whereas alpha-amylases
essentially lack activity on CDs and pullulan. They also
catalyze transglycosylation of oligosaccharides to the
C3-, C4- or C6-hydroxyl groups of various acceptor sugar
molecules. Since these proteins are nearly
indistinguishable from each other, they are referred to
as cyclomaltodextrinases (CMDs). This group of CMDs is
mainly bacterial. The Alpha-amylase family comprises the
largest family of glycoside hydrolases (GH), with the
majority of enzymes acting on starch, glycogen, and
related oligo- and polysaccharides. These proteins
catalyze the transformation of alpha-1,4 and alpha-1,6
glucosidic linkages with retention of the anomeric
center. The protein is described as having 3 domains: A,
B, C. A is a (beta/alpha) 8-barrel; B is a loop between
the beta 3 strand and alpha 3 helix of A; C is the
C-terminal extension characterized by a Greek key. The
majority of the enzymes have an active site cleft found
between domains A and B where a triad of catalytic
residues (Asp, Glu and Asp) performs catalysis. Other
members of this family have lost the catalytic activity
as in the case of the human 4F2hc, or only have 2
residues that serve as the catalytic nucleophile and the
acid/base, such as Thermus A4 beta-galactosidase with 2
Glu residues (GH42) and human alpha-galactosidase with 2
Asp residues (GH31). The family members are quite
extensive and include: alpha amylase,
maltosyltransferase, cyclodextrin glycotransferase,
maltogenic amylase, neopullulanase, isoamylase,
1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 366
Score = 39.5 bits (93), Expect = 0.010
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 25/115 (21%)
Query: 1034 GTPEQLKYLVDECHKAGLYVLLDVVHSH------ASKNVL------------DGLNEFDG 1075
GT E K + + H+ G+ V+LD V +H A K+V G+N FDG
Sbjct: 73 GTNEDFKAVCKKLHENGIKVVLDGVFNHVGRDFFAFKDVQENRENSPYKDWFKGVN-FDG 131
Query: 1076 TQAC---FFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 1127
F ++G G + L L N EV+ +L +R++++E+ DG R D
Sbjct: 132 NSPYNDGFSYEGWEGHYELVKLNLHNP---EVVDYLFDAVRFWIEEFDIDGLRLD 183
>gnl|CDD|200459 cd11320, AmyAc_AmyMalt_CGTase_like, Alpha amylase catalytic domain
found in maltogenic amylases, cyclodextrin
glycosyltransferase, and related proteins. Enzymes such
as amylases, cyclomaltodextrinase (CDase), and
cyclodextrin glycosyltransferase (CGTase) degrade starch
to smaller oligosaccharides by hydrolyzing the
alpha-D-(1,4) linkages between glucose residues. In the
case of CGTases, an additional cyclization reaction is
catalyzed yielding mixtures of cyclic oligosaccharides
which are referred to as alpha-, beta-, or
gamma-cyclodextrins (CDs), consisting of six, seven, or
eight glucose residues, respectively. CGTases are
characterized depending on the major product of the
cyclization reaction. Besides having similar catalytic
site residues, amylases and CGTases contain carbohydrate
binding domains that are distant from the active site and
are implicated in attaching the enzyme to raw starch
granules and in guiding the amylose chain into the active
site. The maltogenic alpha-amylase from Bacillus is a
five-domain structure, unlike most alpha-amylases, but
similar to that of cyclodextrin glycosyltransferase. In
addition to the A, B, and C domains, they have a domain D
and a starch-binding domain E. Maltogenic amylase is an
endo-acting amylase that has activity on cyclodextrins,
terminally modified linear maltodextrins, and amylose.
The Alpha-amylase family comprises the largest family of
glycoside hydrolases (GH), with the majority of enzymes
acting on starch, glycogen, and related oligo- and
polysaccharides. These proteins catalyze the
transformation of alpha-1,4 and alpha-1,6 glucosidic
linkages with retention of the anomeric center. The
protein is described as having 3 domains: A, B, C. A is a
(beta/alpha) 8-barrel; B is a loop between the beta 3
strand and alpha 3 helix of A; C is the C-terminal
extension characterized by a Greek key. The majority of
the enzymes have an active site cleft found between
domains A and B where a triad of catalytic residues (Asp,
Glu and Asp) performs catalysis. Other members of this
family have lost the catalytic activity as in the case of
the human 4F2hc, or only have 2 residues that serve as
the catalytic nucleophile and the acid/base, such as
Thermus A4 beta-galactosidase with 2 Glu residues (GH42)
and human alpha-galactosidase with 2 Asp residues (GH31).
The family members are quite extensive and include: alpha
amylase, maltosyltransferase, cyclodextrin
glycotransferase, maltogenic amylase, neopullulanase,
isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 389
Score = 39.2 bits (92), Expect = 0.012
Identities = 38/161 (23%), Positives = 58/161 (36%), Gaps = 41/161 (25%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNE-----------FDGTQACFF 1081
FGT E LVD H G+ V++D V +H+S + F
Sbjct: 100 FGTWEDFDELVDAAHANGIKVIIDFVPNHSSPADYAEDGALYDNGTLVGDYPNDDNGWFH 159
Query: 1082 HDGPRGTHPLWDSR-------LFNYSEI-----EVLRFLLSNLRWYLDEYQFDGFRFDGV 1129
H+G W R LF+ +++ V ++L ++++LD + DG R D V
Sbjct: 160 HNGGIDD---WSDREQVRYKNLFDLADLNQSNPWVDQYLKDAIKFWLD-HGIDGIRVDAV 215
Query: 1130 TSM-----------LYHNHGC---GEGFSGHYDEYFGLNVD 1156
M +Y GE F G D + V
Sbjct: 216 KHMPPGWQKSFADAIYSKKPVFTFGEWFLGSPDPGYEDYVK 256
>gnl|CDD|200470 cd11331, AmyAc_OligoGlu_like, Alpha amylase catalytic domain found in
oligo-1,6-glucosidase (also called isomaltase;
sucrase-isomaltase; alpha-limit dextrinase) and related
proteins. Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes
the alpha-1,6-glucosidic linkage of
isomalto-oligosaccharides, pannose, and dextran. Unlike
alpha-1,4-glucosidases (EC 3.2.1.20), it fails to
hydrolyze the alpha-1,4-glucosidic bonds of
maltosaccharides. The Alpha-amylase family comprises the
largest family of glycoside hydrolases (GH), with the
majority of enzymes acting on starch, glycogen, and
related oligo- and polysaccharides. These proteins
catalyze the transformation of alpha-1,4 and alpha-1,6
glucosidic linkages with retention of the anomeric
center. The protein is described as having 3 domains: A,
B, C. A is a (beta/alpha) 8-barrel; B is a loop between
the beta 3 strand and alpha 3 helix of A; C is the
C-terminal extension characterized by a Greek key. The
majority of the enzymes have an active site cleft found
between domains A and B where a triad of catalytic
residues (Asp, Glu and Asp) performs catalysis. Other
members of this family have lost the catalytic activity
as in the case of the human 4F2hc, or only have 2
residues that serve as the catalytic nucleophile and the
acid/base, such as Thermus A4 beta-galactosidase with 2
Glu residues (GH42) and human alpha-galactosidase with 2
Asp residues (GH31). The family members are quite
extensive and include: alpha amylase,
maltosyltransferase, cyclodextrin glycotransferase,
maltogenic amylase, neopullulanase, isoamylase,
1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 450
Score = 39.2 bits (92), Expect = 0.013
Identities = 17/32 (53%), Positives = 19/32 (59%)
Query: 1032 LFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 1063
LFGT E LV E H GL V+LD V +H S
Sbjct: 71 LFGTLEDFDRLVAEAHARGLKVILDFVPNHTS 102
>gnl|CDD|215737 pfam00128, Alpha-amylase, Alpha amylase, catalytic domain. Alpha
amylase is classified as family 13 of the glycosyl
hydrolases. The structure is an 8 stranded alpha/beta
barrel containing the active site, interrupted by a ~70
a.a. calcium-binding domain protruding between beta
strand 3 and alpha helix 3, and a carboxyl-terminal Greek
key beta-barrel domain.
Length = 314
Score = 38.8 bits (91), Expect = 0.013
Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 56/177 (31%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS---KNVLDGLNEFDGTQACFFHDG----P 1085
FGT + K L+D+ H+ G+ V+LD+V +H S + + D ++ P
Sbjct: 48 FGTMDDFKELIDKAHERGIKVILDLVPNHTSDEHAWFQESRSSKDNPYRDYYIWRIYSPP 107
Query: 1086 RGTHPLWDSRLFNYSEIEVLRFL--LSNLRW--------YLDE-YQF------DGFRFDG 1128
+ ++ E FL L +L D +F DGFR D
Sbjct: 108 NNWISYFGGSAWSDDEDGQYLFLVSLPDLNTENPEVRKELKDWVVKFWLDKGIDGFRIDA 167
Query: 1129 VTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHD---KYPEIITIAE 1182
V H + F ++F + P++ T+ E
Sbjct: 168 V---------------KHISKGF--------------WHEFTQEMNEYKPDVFTVGE 195
Score = 34.6 bits (80), Expect = 0.33
Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 769 FGTPEQLKYLVDECHKAGLLCFMHVV---CAAGDFNNWNREEFAYKKLDFGKWELVLPPN 825
FGT + K L+D+ H+ G+ + +V D + W +E + K + + + +
Sbjct: 48 FGTMDDFKELIDKAHERGIKVILDLVPNHT--SDEHAWFQESRSSKDNPYRDYYIWRIYS 105
Query: 826 PDG 828
P
Sbjct: 106 PPN 108
>gnl|CDD|200491 cd11354, AmyAc_bac_CMD_like, Alpha amylase catalytic domain found in
bacterial cyclomaltodextrinases and related proteins.
Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase
(NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC
3.2.1.133) catalyze the hydrolysis of alpha-(1,4)
glycosidic linkages on a number of substrates including
cyclomaltodextrins (CDs), pullulan, and starch. These
enzymes hydrolyze CDs and starch to maltose and pullulan
to panose by cleavage of alpha-1,4 glycosidic bonds
whereas alpha-amylases essentially lack activity on CDs
and pullulan. They also catalyze transglycosylation of
oligosaccharides to the C3-, C4- or C6-hydroxyl groups of
various acceptor sugar molecules. Since these proteins
are nearly indistinguishable from each other, they are
referred to as cyclomaltodextrinases (CMDs). This group
of CMDs is bacterial. The Alpha-amylase family comprises
the largest family of glycoside hydrolases (GH), with the
majority of enzymes acting on starch, glycogen, and
related oligo- and polysaccharides. These proteins
catalyze the transformation of alpha-1,4 and alpha-1,6
glucosidic linkages with retention of the anomeric
center. The protein is described as having 3 domains: A,
B, C. A is a (beta/alpha) 8-barrel; B is a loop between
the beta 3 strand and alpha 3 helix of A; C is the
C-terminal extension characterized by a Greek key. The
majority of the enzymes have an active site cleft found
between domains A and B where a triad of catalytic
residues (Asp, Glu and Asp) performs catalysis. Other
members of this family have lost the catalytic activity
as in the case of the human 4F2hc, or only have 2
residues that serve as the catalytic nucleophile and the
acid/base, such as Thermus A4 beta-galactosidase with 2
Glu residues (GH42) and human alpha-galactosidase with 2
Asp residues (GH31). The family members are quite
extensive and include: alpha amylase,
maltosyltransferase, cyclodextrin glycotransferase,
maltogenic amylase, neopullulanase, isoamylase,
1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 357
Score = 38.8 bits (91), Expect = 0.014
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 1034 GTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLDGLNEFDGTQACFFHDGPRGTHP 1090
G E L+ H+ GL VLLD V +H ++ V L + G++ +H G P
Sbjct: 74 GDDEDFDALIAAAHERGLRVLLDGVFNHVGRSHPAVAQALEDGPGSEEDRWHGHAGGGTP 133
>gnl|CDD|200467 cd11328, AmyAc_maltase, Alpha amylase catalytic domain found in
maltase (also known as alpha glucosidase) and related
proteins. Maltase (EC 3.2.1.20) hydrolyzes the terminal,
non-reducing (1->4)-linked alpha-D-glucose residues in
maltose, releasing alpha-D-glucose. In most cases,
maltase is equivalent to alpha-glucosidase, but the term
"maltase" emphasizes the disaccharide nature of the
substrate from which glucose is cleaved, and the term
"alpha-glucosidase" emphasizes the bond, whether the
substrate is a disaccharide or polysaccharide. The
Alpha-amylase family comprises the largest family of
glycoside hydrolases (GH), with the majority of enzymes
acting on starch, glycogen, and related oligo- and
polysaccharides. These proteins catalyze the
transformation of alpha-1,4 and alpha-1,6 glucosidic
linkages with retention of the anomeric center. The
protein is described as having 3 domains: A, B, C. A is a
(beta/alpha) 8-barrel; B is a loop between the beta 3
strand and alpha 3 helix of A; C is the C-terminal
extension characterized by a Greek key. The majority of
the enzymes have an active site cleft found between
domains A and B where a triad of catalytic residues (Asp,
Glu and Asp) performs catalysis. Other members of this
family have lost the catalytic activity as in the case of
the human 4F2hc, or only have 2 residues that serve as
the catalytic nucleophile and the acid/base, such as
Thermus A4 beta-galactosidase with 2 Glu residues (GH42)
and human alpha-galactosidase with 2 Asp residues (GH31).
The family members are quite extensive and include: alpha
amylase, maltosyltransferase, cyclodextrin
glycotransferase, maltogenic amylase, neopullulanase,
isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 470
Score = 38.0 bits (89), Expect = 0.028
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 1032 LFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 1063
+FGT E + L+ E K GL V+LD V +H+S
Sbjct: 73 IFGTMEDFEELIAEAKKLGLKVILDFVPNHSS 104
>gnl|CDD|199892 cd07184, E_set_Isoamylase_like_N, N-terminal Early set domain
associated with the catalytic domain of isoamylase-like
(also called glycogen 6-glucanohydrolase) proteins. E
or "early" set domains are associated with the catalytic
domain of isoamylase-like proteins at the N-terminal
end. Isoamylase is one of the starch-debranching enzymes
that catalyze the hydrolysis of alpha-1,6-glucosidic
linkages specific in alpha-glucans such as amylopectin
or glycogen. Isoamylase contains a bound calcium ion,
but this is not in the same position as the conserved
calcium ion that has been reported in other
alpha-amylase family enzymes. The N-terminal domain of
isoamylase may be related to the immunoglobulin and/or
fibronectin type III superfamilies. These domains are
associated with different types of catalytic domains at
either the N-terminal or C-terminal end and may be
involved in homodimeric/tetrameric/dodecameric
interactions. Members of this family include members of
the alpha amylase family, sialidase, galactose oxidase,
cellulase, cellulose, hyaluronate lyase, chitobiase, and
chitinase. This domain is also a member of the CBM48
(Carbohydrate Binding Module 48) family whose members
include pullulanase, maltooligosyl trehalose synthase,
starch branching enzyme, glycogen branching enzyme,
glycogen debranching enzyme, and the beta subunit of
AMP-activated protein kinase.
Length = 86
Score = 34.9 bits (81), Expect = 0.029
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 794 VCAAGDFNNWNREEFAYKKLDFGKW--ELVLPPN 825
V GDFN+W+ + KKL G + L LP
Sbjct: 16 VSLVGDFNDWDPQATPMKKLKNGTFSATLDLPAG 49
>gnl|CDD|200484 cd11346, AmyAc_plant_IsoA, Alpha amylase catalytic domain family
found in plant isoamylases. Two types of debranching
enzymes exist in plants: isoamylase-type (EC 3.2.1.68)
and a pullulanase-type (EC 3.2.1.41, also known as
limit-dextrinase). These efficiently hydrolyze
alpha-(1,6)-linkages in amylopectin and pullulan. This
group does not contain the conserved catalytic triad
present in other alpha-amylase-like proteins. The
Alpha-amylase family comprises the largest family of
glycoside hydrolases (GH), with the majority of enzymes
acting on starch, glycogen, and related oligo- and
polysaccharides. These proteins catalyze the
transformation of alpha-1,4 and alpha-1,6 glucosidic
linkages with retention of the anomeric center. The
protein is described as having 3 domains: A, B, C. A is a
(beta/alpha) 8-barrel; B is a loop between the beta 3
strand and alpha 3 helix of A; C is the C-terminal
extension characterized by a Greek key. The majority of
the enzymes have an active site cleft found between
domains A and B where a triad of catalytic residues (Asp,
Glu and Asp) performs catalysis. Other members of this
family have lost the catalytic activity as in the case of
the human 4F2hc, or only have 2 residues that serve as
the catalytic nucleophile and the acid/base, such as
Thermus A4 beta-galactosidase with 2 Glu residues (GH42)
and human alpha-galactosidase with 2 Asp residues (GH31).
The family members are quite extensive and include: alpha
amylase, maltosyltransferase, cyclodextrin
glycotransferase, maltogenic amylase, neopullulanase,
isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 347
Score = 37.8 bits (88), Expect = 0.033
Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 14/118 (11%)
Query: 1031 GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQ-------ACFFHD 1083
+L+ +V H G+ VLL+VV +H + +G +E ++ A ++
Sbjct: 81 SSLSASAELRAMVKGLHSNGIEVLLEVVLTHTA----EGTDESPESESLRGIDAASYYIL 136
Query: 1084 GPRGTHPLWD---SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGVTSMLYHNHG 1138
G G + + N + +L +LR + E+ DGF F ++ HG
Sbjct: 137 GKSGVLENSGVPGAAVLNCNHPVTQSLILDSLRHWATEFGVDGFCFINAEGLVRGPHG 194
>gnl|CDD|200476 cd11337, AmyAc_CMD_like, Alpha amylase catalytic domain found in
cyclomaltodextrinases and related proteins.
Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase
(NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC
3.2.1.133) catalyze the hydrolysis of alpha-(1,4)
glycosidic linkages on a number of substrates including
cyclomaltodextrins (CDs), pullulan, and starch. These
enzymes hydrolyze CDs and starch to maltose and pullulan
to panose by cleavage of alpha-1,4 glycosidic bonds
whereas alpha-amylases essentially lack activity on CDs
and pullulan. They also catalyze transglycosylation of
oligosaccharides to the C3-, C4- or C6-hydroxyl groups of
various acceptor sugar molecules. Since these proteins
are nearly indistinguishable from each other, they are
referred to as cyclomaltodextrinases (CMDs). This group
of CMDs is mainly bacterial. The Alpha-amylase family
comprises the largest family of glycoside hydrolases
(GH), with the majority of enzymes acting on starch,
glycogen, and related oligo- and polysaccharides. These
proteins catalyze the transformation of alpha-1,4 and
alpha-1,6 glucosidic linkages with retention of the
anomeric center. The protein is described as having 3
domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a
loop between the beta 3 strand and alpha 3 helix of A; C
is the C-terminal extension characterized by a Greek key.
The majority of the enzymes have an active site cleft
found between domains A and B where a triad of catalytic
residues (Asp, Glu and Asp) performs catalysis. Other
members of this family have lost the catalytic activity
as in the case of the human 4F2hc, or only have 2
residues that serve as the catalytic nucleophile and the
acid/base, such as Thermus A4 beta-galactosidase with 2
Glu residues (GH42) and human alpha-galactosidase with 2
Asp residues (GH31). The family members are quite
extensive and include: alpha amylase,
maltosyltransferase, cyclodextrin glycotransferase,
maltogenic amylase, neopullulanase, isoamylase,
1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 328
Score = 37.5 bits (88), Expect = 0.037
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 20/94 (21%)
Query: 1034 GTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWD 1093
GT E K LV H+ G+ V+LD V +H ++ FF +G H +D
Sbjct: 71 GTNEDFKALVAALHERGIRVVLDGVFNHVGRD--------------FFWEG----H--YD 110
Query: 1094 SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 1127
N V+ +L +R++++E+ DG R D
Sbjct: 111 LVKLNLDNPAVVDYLFDVVRFWIEEFDIDGLRLD 144
>gnl|CDD|200472 cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase catalytic domain
found in Sucrose isomerases, oligo-1,6-glucosidase (also
called isomaltase; sucrase-isomaltase; alpha-limit
dextrinase), dextran glucosidase (also called glucan
1,6-alpha-glucosidase), and related proteins. The
sucrose isomerases (SIs) Isomaltulose synthase (EC
5.4.99.11) and Trehalose synthase (EC 5.4.99.16) catalyze
the isomerization of sucrose and maltose to produce
isomaltulose and trehalulose, respectively.
Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the
alpha-1,6-glucosidic linkage of isomaltooligosaccharides,
pannose, and dextran. Unlike alpha-1,4-glucosidases (EC
3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic
bonds of maltosaccharides. Dextran glucosidase (DGase, EC
3.2.1.70) hydrolyzes alpha-1,6-glucosidic linkages at the
non-reducing end of panose, isomaltooligosaccharides and
dextran to produce alpha-glucose.The common reaction
chemistry of the alpha-amylase family enzymes is based on
a two-step acid catalytic mechanism that requires two
critical carboxylates: one acting as a general acid/base
(Glu) and the other as a nucleophile (Asp). Both
hydrolysis and transglycosylation proceed via the
nucleophilic substitution reaction between the anomeric
carbon, C1 and a nucleophile. Both enzymes contain the
three catalytic residues (Asp, Glu and Asp) common to the
alpha-amylase family as well as two histidine residues
which are predicted to be critical to binding the glucose
residue adjacent to the scissile bond in the substrates.
The Alpha-amylase family comprises the largest family of
glycoside hydrolases (GH), with the majority of enzymes
acting on starch, glycogen, and related oligo- and
polysaccharides. These proteins catalyze the
transformation of alpha-1,4 and alpha-1,6 glucosidic
linkages with retention of the anomeric center. The
protein is described as having 3 domains: A, B, C. A is a
(beta/alpha) 8-barrel; B is a loop between the beta 3
strand and alpha 3 helix of A; C is the C-terminal
extension characterized by a Greek key. The majority of
the enzymes have an active site cleft found between
domains A and B where a triad of catalytic residues
performs catalysis. Other members of this family have
lost the catalytic activity as in the case of the human
4F2hc, or only have 2 residues that serve as the
catalytic nucleophile and the acid/base, such as Thermus
A4 beta-galactosidase with 2 Glu residues (GH42) and
human alpha-galactosidase with 2 Asp residues (GH31). The
family members are quite extensive and include: alpha
amylase, maltosyltransferase, cyclodextrin
glycotransferase, maltogenic amylase, neopullulanase,
isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 428
Score = 37.4 bits (88), Expect = 0.045
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 1032 LFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 1063
FGT E L+ E HK G+ +++D+V +H S
Sbjct: 68 EFGTMEDFDELIKEAHKRGIKIIMDLVVNHTS 99
>gnl|CDD|200478 cd11339, AmyAc_bac_CMD_like_2, Alpha amylase catalytic domain found
in bacterial cyclomaltodextrinases and related proteins.
Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase
(NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC
3.2.1.133) catalyze the hydrolysis of alpha-(1,4)
glycosidic linkages on a number of substrates including
cyclomaltodextrins (CDs), pullulan, and starch. These
enzymes hydrolyze CDs and starch to maltose and pullulan
to panose by cleavage of alpha-1,4 glycosidic bonds
whereas alpha-amylases essentially lack activity on CDs
and pullulan. They also catalyze transglycosylation of
oligosaccharides to the C3-, C4- or C6-hydroxyl groups of
various acceptor sugar molecules. Since these proteins
are nearly indistinguishable from each other, they are
referred to as cyclomaltodextrinases (CMDs). This group
of CMDs is bacterial. The Alpha-amylase family comprises
the largest family of glycoside hydrolases (GH), with the
majority of enzymes acting on starch, glycogen, and
related oligo- and polysaccharides. These proteins
catalyze the transformation of alpha-1,4 and alpha-1,6
glucosidic linkages with retention of the anomeric
center. The protein is described as having 3 domains: A,
B, C. A is a (beta/alpha) 8-barrel; B is a loop between
the beta 3 strand and alpha 3 helix of A; C is the
C-terminal extension characterized by a Greek key. The
majority of the enzymes have an active site cleft found
between domains A and B where a triad of catalytic
residues (Asp, Glu and Asp) performs catalysis. Other
members of this family have lost the catalytic activity
as in the case of the human 4F2hc, or only have 2
residues that serve as the catalytic nucleophile and the
acid/base, such as Thermus A4 beta-galactosidase with 2
Glu residues (GH42) and human alpha-galactosidase with 2
Asp residues (GH31). The family members are quite
extensive and include: alpha amylase,
maltosyltransferase, cyclodextrin glycotransferase,
maltogenic amylase, neopullulanase, isoamylase,
1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 344
Score = 35.7 bits (83), Expect = 0.16
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 33/97 (34%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 1092
GT L+ L+D H G+ V+LD+V +H D LN +P
Sbjct: 95 LGTDADLQDLIDAAHARGIKVILDIVVNHTG----D-LNT---------------ENP-- 132
Query: 1093 DSRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFDGV 1129
EV+ +L+ +W++D DGFR D V
Sbjct: 133 ----------EVVDYLIDAYKWWID-TGVDGFRIDTV 158
Score = 29.9 bits (68), Expect = 8.7
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Query: 769 FGTPEQLKYLVDECHKAGLLCFMHVVCA-AGDFNNWN---REEF--AYKK-LDFG 816
GT L+ L+D H G+ + +V GD N N + AYK +D G
Sbjct: 95 LGTDADLQDLIDAAHARGIKVILDIVVNHTGDLNTENPEVVDYLIDAYKWWIDTG 149
>gnl|CDD|236518 PRK09441, PRK09441, cytoplasmic alpha-amylase; Reviewed.
Length = 479
Score = 34.9 bits (81), Expect = 0.27
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSH 1061
+GT E+L +D H+ G+ V DVV +H
Sbjct: 77 YGTKEELLNAIDALHENGIKVYADVVLNH 105
Score = 33.3 bits (77), Expect = 0.88
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 1113 RWYLDEYQFDGFRFDGV 1129
+WY++ FDGFR D V
Sbjct: 219 KWYMETTGFDGFRLDAV 235
>gnl|CDD|233851 TIGR02403, trehalose_treC, alpha,alpha-phosphotrehalase. Trehalose
is a glucose disaccharide that serves in many biological
systems as a compatible solute for protection against
hyperosmotic and thermal stress. This family describes
trehalose-6-phosphate hydrolase, product of the treC (or
treA) gene, which is often found together with a
trehalose uptake transporter and a trehalose operon
repressor.
Length = 543
Score = 35.0 bits (81), Expect = 0.31
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 1032 LFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 1063
LFGT + LV E K + ++LD+V +H S
Sbjct: 70 LFGTMADFEELVSEAKKRNIKIMLDMVFNHTS 101
>gnl|CDD|238624 cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases, subgroup
A is part of the superfamily of metallo-dependent
hydrolases, a large group of proteins that show
conservation in their 3-dimensional fold (TIM barrel) and
in details of their active site. The vast majority of the
members have a conserved metal binding site, involving
four histidines and one aspartic acid residue. In the
common reaction mechanism, the metal ion (or ions)
deprotonate a water molecule for a nucleophilic attack on
the substrate. The function of this subgroup is unknown.
Length = 342
Score = 34.6 bits (80), Expect = 0.31
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Query: 1035 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVL 1067
+ E+L+ +VDE HKAGLYV H++ ++ +
Sbjct: 158 SEEELRAIVDEAHKAGLYV---AAHAYGAEAIR 187
>gnl|CDD|216153 pfam00854, PTR2, POT family. The POT (proton-dependent oligopeptide
transport) family all appear to be proton dependent
transporters.
Length = 372
Score = 34.2 bits (79), Expect = 0.41
Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 10/95 (10%)
Query: 918 FVRVVIPRIVKQGMAIPDKWIELLK-KFKDEDWNM-GNIVHTLTNRRYMEKTVAYAESH- 974
++ + + +P L K ++ VHT ++ +A
Sbjct: 140 IAFIITAAGKNRKLQLPKDSHWLYWALEKYNKRSISQTKVHTRVAVIFIPLPKFWALFDQ 199
Query: 975 ------DQALVGD-KTIAFWLMDKEMYTHMSTLSD 1002
QA++ AFW++ +M+T ++TL
Sbjct: 200 QGSVWLLQAILLMLPIWAFWILPDQMWTQLATLIV 234
>gnl|CDD|200457 cd11318, AmyAc_bac_fung_AmyA, Alpha amylase catalytic domain found in
bacterial and fungal Alpha amylases (also called
1,4-alpha-D-glucan-4-glucanohydrolase). AmyA (EC
3.2.1.1) catalyzes the hydrolysis of alpha-(1,4)
glycosidic linkages of glycogen, starch, related
polysaccharides, and some oligosaccharides. This group
includes bacterial and fungal proteins. The Alpha-amylase
family comprises the largest family of glycoside
hydrolases (GH), with the majority of enzymes acting on
starch, glycogen, and related oligo- and polysaccharides.
These proteins catalyze the transformation of alpha-1,4
and alpha-1,6 glucosidic linkages with retention of the
anomeric center. The protein is described as having 3
domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a
loop between the beta 3 strand and alpha 3 helix of A; C
is the C-terminal extension characterized by a Greek key.
The majority of the enzymes have an active site cleft
found between domains A and B where a triad of catalytic
residues (Asp, Glu and Asp) performs catalysis. Other
members of this family have lost the catalytic activity
as in the case of the human 4F2hc, or only have 2
residues that serve as the catalytic nucleophile and the
acid/base, such as Thermus A4 beta-galactosidase with 2
Glu residues (GH42) and human alpha-galactosidase with 2
Asp residues (GH31). The family members are quite
extensive and include: alpha amylase,
maltosyltransferase, cyclodextrin glycotransferase,
maltogenic amylase, neopullulanase, isoamylase,
1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 391
Score = 33.6 bits (78), Expect = 0.63
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 1099 YSEIEVLRFLLSNLRWYLDEYQFDGFRFDGV 1129
YS EV L +WY++ DGFR D V
Sbjct: 203 YSNPEVREELKRWGKWYINTTGLDGFRLDAV 233
Score = 31.3 bits (72), Expect = 3.3
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 1034 GTPEQLKYLVDECHKAGLYVLLDVVHSH 1061
GT E+L + H+ G+ V D V +H
Sbjct: 76 GTKEELLEAIKALHENGIQVYADAVLNH 103
>gnl|CDD|237739 PRK14510, PRK14510, putative bifunctional
4-alpha-glucanotransferase/glycogen debranching enzyme;
Provisional.
Length = 1221
Score = 33.7 bits (77), Expect = 0.80
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 7/97 (7%)
Query: 1037 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG--LNEFDGTQACFFHDGPRGTHPLWD- 1093
E+ + E AG+ V+LDVV +H ++ G L+ + + ++ P +
Sbjct: 247 EEFAQAIKEAQSAGIAVILDVVFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENW 306
Query: 1094 ---SRLFNYSEIEVLRFLLSNLRWYLDEYQFDGFRFD 1127
L N +LR + LR + + DGFR D
Sbjct: 307 WGCGNLPNLERPFILRLPMDVLRSWA-KRGVDGFRLD 342
>gnl|CDD|200456 cd11317, AmyAc_bac_euk_AmyA, Alpha amylase catalytic domain found
in bacterial and eukaryotic Alpha amylases (also called
1,4-alpha-D-glucan-4-glucanohydrolase). AmyA (EC
3.2.1.1) catalyzes the hydrolysis of alpha-(1,4)
glycosidic linkages of glycogen, starch, related
polysaccharides, and some oligosaccharides. This group
includes AmyA proteins from bacteria, fungi, mammals,
insects, mollusks, and nematodes. The Alpha-amylase
family comprises the largest family of glycoside
hydrolases (GH), with the majority of enzymes acting on
starch, glycogen, and related oligo- and
polysaccharides. These proteins catalyze the
transformation of alpha-1,4 and alpha-1,6 glucosidic
linkages with retention of the anomeric center. The
protein is described as having 3 domains: A, B, C. A is
a (beta/alpha) 8-barrel; B is a loop between the beta 3
strand and alpha 3 helix of A; C is the C-terminal
extension characterized by a Greek key. The majority of
the enzymes have an active site cleft found between
domains A and B where a triad of catalytic residues
(Asp, Glu and Asp) performs catalysis. Other members of
this family have lost the catalytic activity as in the
case of the human 4F2hc, or only have 2 residues that
serve as the catalytic nucleophile and the acid/base,
such as Thermus A4 beta-galactosidase with 2 Glu
residues (GH42) and human alpha-galactosidase with 2 Asp
residues (GH31). The family members are quite extensive
and include: alpha amylase, maltosyltransferase,
cyclodextrin glycotransferase, maltogenic amylase,
neopullulanase, isoamylase, 1,4-alpha-D-glucan
maltotetrahydrolase, 4-alpha-glucotransferase,
oligo-1,6-glucosidase, amylosucrase, sucrose
phosphorylase, and amylomaltase.
Length = 329
Score = 32.9 bits (76), Expect = 1.00
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 113 QSIQYILTGVFGTPEQLKYLVDECHKAG 140
Q + Y L GT + + +V+ C+ AG
Sbjct: 52 QPVSYKLNSRSGTEAEFRDMVNRCNAAG 79
Score = 32.1 bits (74), Expect = 1.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSH 1061
GT + + +V+ C+ AG+ V +D V +H
Sbjct: 62 SGTEAEFRDMVNRCNAAGVRVYVDAVINH 90
>gnl|CDD|130264 TIGR01196, edd, 6-phosphogluconate dehydratase. A close homolog,
designated MocB (mannityl opine catabolism), is found in
a mannopine catabolism region of a plasmid of
Agrobacterium tumefaciens. However, it is not essential
for mannopine catabolism, branches within the cluster of
6-phosphogluconate dehydratases (with a short branch
length) in a tree rooted by the presence of other
dehydyatases. It may represent an authentic
6-phosphogluconate dehydratase, redundant with the
chromosomal copy shown to exist in plasmid-cured strains.
This model includes mocB above the trusted cutoff,
although the designation is somewhat tenuous [Energy
metabolism, Entner-Doudoroff].
Length = 601
Score = 32.9 bits (75), Expect = 1.2
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 15/63 (23%)
Query: 1174 YPEII--------TIAEDVSGMPASCRPVTEGGTGFDYRLVSLEGSALSA-------LFD 1218
YP++I +A+ G+PA C VT+G G + L S + A+S +FD
Sbjct: 86 YPDLIKKALQEANAVAQVAGGVPAMCDGVTQGYDGMELSLFSRDVIAMSTAIGLSHNMFD 145
Query: 1219 AAM 1221
A+
Sbjct: 146 GAL 148
>gnl|CDD|200487 cd11349, AmyAc_3, Alpha amylase catalytic domain found in an
uncharacterized protein family. The Alpha-amylase family
comprises the largest family of glycoside hydrolases
(GH), with the majority of enzymes acting on starch,
glycogen, and related oligo- and polysaccharides. These
proteins catalyze the transformation of alpha-1,4 and
alpha-1,6 glucosidic linkages with retention of the
anomeric center. The protein is described as having 3
domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a
loop between the beta 3 strand and alpha 3 helix of A; C
is the C-terminal extension characterized by a Greek key.
The majority of the enzymes have an active site cleft
found between domains A and B where a triad of catalytic
residues (Asp, Glu and Asp) performs catalysis. Other
members of this family have lost the catalytic activity
as in the case of the human 4F2hc, or only have 2
residues that serve as the catalytic nucleophile and the
acid/base, such as Thermus A4 beta-galactosidase with 2
Glu residues (GH42) and human alpha-galactosidase with 2
Asp residues (GH31). The family members are quite
extensive and include: alpha amylase,
maltosyltransferase, cyclodextrin glycotransferase,
maltogenic amylase, neopullulanase, isoamylase,
1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 456
Score = 32.6 bits (75), Expect = 1.4
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 1037 EQLKYLVDECHKAGLYVLLDVVHSHASKN 1065
E+ + LV+ H AGL V++D V +H ++
Sbjct: 107 EEFEALVERTHAAGLKVIIDFVPNHVARQ 135
>gnl|CDD|227513 COG5186, PAP1, Poly(A) polymerase [RNA processing and
modification].
Length = 552
Score = 32.6 bits (74), Expect = 1.6
Identities = 24/94 (25%), Positives = 32/94 (34%), Gaps = 16/94 (17%)
Query: 856 WATYVTEPPVVGHAYEQRIWNPK--PQDK-HKWTSSKPKKPD---NLKIYESHVGICTQE 909
W V P+ + R+WNPK P DK H+ P P I S + E
Sbjct: 268 WPQPVILKPIEDGPLQVRVWNPKVYPSDKYHRMPVITPAYPSMCATHNITNSTQHVILME 327
Query: 910 QKCASYEDFVRVVIPRIVKQGMAIPDKWIELLKK 943
FVR +I+ W L +K
Sbjct: 328 --------FVRAH--KILSDIERNALDWRRLFEK 351
>gnl|CDD|237740 PRK14511, PRK14511, maltooligosyl trehalose synthase; Provisional.
Length = 879
Score = 32.3 bits (74), Expect = 2.1
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 1034 GTPEQLKYLVDECHKAGLYVLLDVVHSH 1061
G E L+ L G+ ++LD+V +H
Sbjct: 66 GGEEGLRRLAAALRAHGMGLILDIVPNH 93
>gnl|CDD|215419 PLN02784, PLN02784, alpha-amylase.
Length = 894
Score = 31.9 bits (72), Expect = 2.7
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSH 1061
+GT ++LK LV H+ G+ VL D V +H
Sbjct: 564 YGTIDELKDLVKSFHEVGIKVLGDAVLNH 592
>gnl|CDD|200463 cd11324, AmyAc_Amylosucrase, Alpha amylase catalytic domain found in
Amylosucrase. Amylosucrase is a glucosyltransferase that
catalyzes the transfer of a D-glucopyranosyl moiety from
sucrose onto an acceptor molecule. When the acceptor is
another saccharide, only alpha-1,4 linkages are produced.
Unlike most amylopolysaccharide synthases, it does not
require any alpha-D-glucosyl nucleoside diphosphate
substrate. In the presence of glycogen it catalyzes the
transfer of a D-glucose moiety onto a glycogen branch,
but in its absence, it hydrolyzes sucrose and synthesizes
polymers, smaller maltosaccharides, and sucrose isoforms.
The Alpha-amylase family comprises the largest family of
glycoside hydrolases (GH), with the majority of enzymes
acting on starch, glycogen, and related oligo- and
polysaccharides. These proteins catalyze the
transformation of alpha-1,4 and alpha-1,6 glucosidic
linkages with retention of the anomeric center. The
protein is described as having 3 domains: A, B, C. A is a
(beta/alpha) 8-barrel; B is a loop between the beta 3
strand and alpha 3 helix of A; C is the C-terminal
extension characterized by a Greek key. The majority of
the enzymes have an active site cleft found between
domains A and B where a triad of catalytic residues (Asp,
Glu and Asp) performs catalysis. Other members of this
family have lost the catalytic activity as in the case of
the human 4F2hc, or only have 2 residues that serve as
the catalytic nucleophile and the acid/base, such as
Thermus A4 beta-galactosidase with 2 Glu residues (GH42)
and human alpha-galactosidase with 2 Asp residues (GH31).
The family members are quite extensive and include: alpha
amylase, maltosyltransferase, cyclodextrin
glycotransferase, maltogenic amylase, neopullulanase,
isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 536
Score = 31.8 bits (73), Expect = 2.8
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASK 1064
GT E L+ L E + G+ ++LD V +H +
Sbjct: 132 LGTMEDLRALAAELRERGISLVLDFVLNHTAD 163
>gnl|CDD|216395 pfam01261, AP_endonuc_2, Xylose isomerase-like TIM barrel. This TIM
alpha/beta barrel structure is found in xylose isomerase
and in endonuclease IV (EC:3.1.21.2). This domain is also
found in the N termini of bacterial myo-inositol
catabolism proteins. These are involved in the
myo-inositol catabolism pathway, and is required for
growth on myo-inositol in Rhizobium leguminosarum bv.
viciae.
Length = 202
Score = 30.8 bits (70), Expect = 2.9
Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 14/72 (19%)
Query: 1018 EQLKYLVDECHKAGL-------------FGTPEQLKYLVDECHKAGLYVLLDVVHSHASK 1064
E L L + + G+ G E+ L+DE + + LD H+ A+
Sbjct: 103 ESLNELAELAEEYGVKLALENHPGTGVELGYFEEALRLIDEVDSPNVGLCLDTGHAFAAG 162
Query: 1065 -NVLDGLNEFDG 1075
+ + L
Sbjct: 163 GDPEELLRRLGD 174
>gnl|CDD|200473 cd11334, AmyAc_TreS, Alpha amylase catalytic domain found in
Trehalose synthetase. Trehalose synthetase (TreS)
catalyzes the reversible interconversion of trehalose and
maltose. The enzyme catalyzes the reaction in both
directions, but the preferred substrate is maltose.
Glucose is formed as a by-product of this reaction. It is
believed that the catalytic mechanism may involve the
cutting of the incoming disaccharide and transfer of a
glucose to an enzyme-bound glucose. This enzyme also
catalyzes production of a glucosamine disaccharide from
maltose and glucosamine. The Alpha-amylase family
comprises the largest family of glycoside hydrolases
(GH), with the majority of enzymes acting on starch,
glycogen, and related oligo- and polysaccharides. These
proteins catalyze the transformation of alpha-1,4 and
alpha-1,6 glucosidic linkages with retention of the
anomeric center. The protein is described as having 3
domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a
loop between the beta 3 strand and alpha 3 helix of A; C
is the C-terminal extension characterized by a Greek key.
The majority of the enzymes have an active site cleft
found between domains A and B where a triad of catalytic
residues (Asp, Glu and Asp) performs catalysis. Other
members of this family have lost the catalytic activity
as in the case of the human 4F2hc, or only have 2
residues that serve as the catalytic nucleophile and the
acid/base, such as Thermus A4 beta-galactosidase with 2
Glu residues (GH42) and human alpha-galactosidase with 2
Asp residues (GH31). The family members are quite
extensive and include: alpha amylase,
maltosyltransferase, cyclodextrin glycotransferase,
maltogenic amylase, neopullulanase, isoamylase,
1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 447
Score = 31.4 bits (72), Expect = 3.1
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 1063
GT + E H+ G+ V++D+V +H S
Sbjct: 71 LGTLGDFVEFLREAHERGIRVIIDLVVNHTS 101
>gnl|CDD|233874 TIGR02456, treS_nterm, trehalose synthase. Trehalose synthase
interconverts maltose and alpha, alpha-trehalose by
transglucosylation. This is one of at least three
mechanisms for biosynthesis of trehalose, an important
and widespread compatible solute. However, it is not
driven by phosphate activation of sugars and its
physiological role may tend toward trehalose degradation.
This view is accentuated by numerous examples of fusion
to a probable maltokinase domain. The sequence region
described by this model is found both as the whole of a
trehalose synthase and as the N-terminal region of a
larger fusion protein that includes trehalose synthase
activity. Several of these fused trehalose synthases have
a domain homologous to proteins with maltokinase activity
from Actinoplanes missouriensis and Streptomyces
coelicolor (PMID:15378530) [Energy metabolism,
Biosynthesis and degradation of polysaccharides].
Length = 539
Score = 31.6 bits (72), Expect = 3.1
Identities = 33/131 (25%), Positives = 50/131 (38%), Gaps = 37/131 (28%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSH---------ASKNVLDGL-----------NE 1072
FGT + K VDE H G+ V++D+V +H +++ DG +
Sbjct: 72 FGTIDDFKDFVDEAHARGMRVIIDLVLNHTSDQHPWFQEARSNPDGPYRDFYVWSDTDEK 131
Query: 1073 FDGTQACFF--------HDGPRGTHPLWDSRLF------NYSEIEVLRFLLSNLRWYLDE 1118
+ T+ F D + W R F NY V + +R++LD
Sbjct: 132 YKDTRIIFVDTEKSNWTFDPVAKQY-YW-HRFFSHQPDLNYDNPAVHDAVHDVMRFWLD- 188
Query: 1119 YQFDGFRFDGV 1129
DGFR D V
Sbjct: 189 LGVDGFRLDAV 199
>gnl|CDD|222875 PHA02558, uvsW, UvsW helicase; Provisional.
Length = 501
Score = 31.5 bits (72), Expect = 3.6
Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 23/110 (20%)
Query: 132 LVDECHKAGLFGTPEQLKYLVDECH----KAGLFGTPE-----QLKYLVDECHKAGLFGT 182
+VDECH T + L ++ + K GL G+ L+Y+ GLFG
Sbjct: 227 IVDECHLF----TGKSLTSIITKLDNCKFKFGLTGSLRDGKANILQYV-------GLFGD 275
Query: 183 PEQL---KYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 229
+ L++E L L+Y ++ K E++KY+
Sbjct: 276 IFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITS 325
Score = 31.5 bits (72), Expect = 3.6
Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 23/110 (20%)
Query: 227 LVDECHKAGLFGTPEQLKYLVDECH----KAGLFGTPE-----QLKYLVDECHKAGLFGT 277
+VDECH T + L ++ + K GL G+ L+Y+ GLFG
Sbjct: 227 IVDECHLF----TGKSLTSIITKLDNCKFKFGLTGSLRDGKANILQYV-------GLFGD 275
Query: 278 PEQL---KYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 324
+ L++E L L+Y ++ K E++KY+
Sbjct: 276 IFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITS 325
Score = 31.5 bits (72), Expect = 3.6
Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 23/110 (20%)
Query: 322 LVDECHKAGLFGTPEQLKYLVDECH----KAGLFGTPE-----QLKYLVDECHKAGLFGT 372
+VDECH T + L ++ + K GL G+ L+Y+ GLFG
Sbjct: 227 IVDECHLF----TGKSLTSIITKLDNCKFKFGLTGSLRDGKANILQYV-------GLFGD 275
Query: 373 PEQL---KYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 419
+ L++E L L+Y ++ K E++KY+
Sbjct: 276 IFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITS 325
Score = 31.5 bits (72), Expect = 3.6
Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 23/110 (20%)
Query: 417 LVDECHKAGLFGTPEQLKYLVDECH----KAGLFGTPE-----QLKYLVDECHKAGLFGT 467
+VDECH T + L ++ + K GL G+ L+Y+ GLFG
Sbjct: 227 IVDECHLF----TGKSLTSIITKLDNCKFKFGLTGSLRDGKANILQYV-------GLFGD 275
Query: 468 PEQL---KYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 514
+ L++E L L+Y ++ K E++KY+
Sbjct: 276 IFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITS 325
Score = 31.5 bits (72), Expect = 3.6
Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 23/110 (20%)
Query: 512 LVDECHKAGLFGTPEQLKYLVDECH----KAGLFGTPE-----QLKYLVDECHKAGLFGT 562
+VDECH T + L ++ + K GL G+ L+Y+ GLFG
Sbjct: 227 IVDECHLF----TGKSLTSIITKLDNCKFKFGLTGSLRDGKANILQYV-------GLFGD 275
Query: 563 PEQL---KYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 609
+ L++E L L+Y ++ K E++KY+
Sbjct: 276 IFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITS 325
Score = 31.5 bits (72), Expect = 3.6
Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 23/110 (20%)
Query: 607 LVDECHKAGLFGTPEQLKYLVDECH----KAGLFGTPE-----QLKYLVDECHKAGLFGT 657
+VDECH T + L ++ + K GL G+ L+Y+ GLFG
Sbjct: 227 IVDECHLF----TGKSLTSIITKLDNCKFKFGLTGSLRDGKANILQYV-------GLFGD 275
Query: 658 PEQL---KYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVD 704
+ L++E L L+Y ++ K E++KY+
Sbjct: 276 IFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITS 325
>gnl|CDD|200462 cd11323, AmyAc_AGS, Alpha amylase catalytic domain found in Alpha
1,3-glucan synthase (also called uridine
diphosphoglucose-1,3-alpha-glucan glucosyltransferase and
1,3-alpha-D-glucan synthase). Alpha 1,3-glucan synthase
(AGS, EC 2.4.1.183) is an enzyme that catalyzes the
reversible chemical reaction of UDP-glucose and
[alpha-D-glucosyl-(1-3)]n to form UDP and
[alpha-D-glucosyl-(1-3)]n+1. AGS is a component of fungal
cell walls. The cell wall of filamentous fungi is
composed of 10-15% chitin and 10-35% alpha-1,3-glucan.
AGS is triggered in fungi as a response to cell wall
stress and elongates the glucan chains in cell wall
synthesis. This group includes proteins from Ascomycetes
and Basidomycetes. The Alpha-amylase family comprises the
largest family of glycoside hydrolases (GH), with the
majority of enzymes acting on starch, glycogen, and
related oligo- and polysaccharides. These proteins
catalyze the transformation of alpha-1,4 and alpha-1,6
glucosidic linkages with retention of the anomeric
center. The protein is described as having 3 domains: A,
B, C. A is a (beta/alpha) 8-barrel; B is a loop between
the beta 3 strand and alpha 3 helix of A; C is the
C-terminal extension characterized by a Greek key. The
majority of the enzymes have an active site cleft found
between domains A and B where a triad of catalytic
residues (Asp, Glu and Asp) performs catalysis. Other
members of this family have lost the catalytic activity
as in the case of the human 4F2hc, or only have 2
residues that serve as the catalytic nucleophile and the
acid/base, such as Thermus A4 beta-galactosidase with 2
Glu residues (GH42) and human alpha-galactosidase with 2
Asp residues (GH31). The family members are quite
extensive and include: alpha amylase,
maltosyltransferase, cyclodextrin glycotransferase,
maltogenic amylase, neopullulanase, isoamylase,
1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 569
Score = 31.5 bits (72), Expect = 3.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLD 1056
FGT + +DE H+ G+YV+LD
Sbjct: 143 FGTIADWRAAIDEIHRRGMYVVLD 166
>gnl|CDD|233041 TIGR00596, rad1, DNA repair protein (rad1). All proteins in this
family for which functions are known are components in a
multiprotein endonuclease complex (usually made up of
Rad1 and Rad10 homologs). This complex is used primarily
for nucleotide excision repair but also for some aspects
of recombinational repair in some species. Most Archaeal
species also have homologs of these genes, but the
function of these Archaeal genes is not known, so we have
set our cutoff to only pick up the eukaryotic genes.This
family is based on the phylogenomic analysis of JA Eisen
(1999, Ph.D. Thesis, Stanford Universit [DNA metabolism,
DNA replication, recombination, and repair].
Length = 814
Score = 31.3 bits (71), Expect = 4.1
Identities = 44/195 (22%), Positives = 65/195 (33%), Gaps = 37/195 (18%)
Query: 947 EDWNMGNIVHT---LTNRRYMEKTVAYAESHDQALVGDKTI---------------AFWL 988
EDWN+ N + RR ++ + LVGD I L
Sbjct: 154 EDWNLENALTKSFDRIIRRQLDPNWHRLSYKTKQLVGDLKILRHLLQSLVTYDAVSFLGL 213
Query: 989 MDKEMYTHMSTLSD-----PSLIIDRACEKFGTPEQLKYLVDECHKAGLFGTPEQLKYLV 1043
+D + + +S P L++D A F Q Y E G + + ++
Sbjct: 214 LDTSLRANKPAVSRKYSESPWLLLDAAQLIFSYARQRVYYEGE-------GPNMKNEPVL 266
Query: 1044 DECHK--AGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSE 1101
+E K VL ++ H N L G G D R L D + +
Sbjct: 267 EENPKWEVLTDVLKEISHEMRMTNRLQG----PGKVLIMCSDN-RTCLQLRDYLTTSNKK 321
Query: 1102 IEVLRFLLSNLRWYL 1116
FLL+ LRWY
Sbjct: 322 RGSRAFLLNKLRWYR 336
>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid
metabolism].
Length = 613
Score = 31.1 bits (71), Expect = 4.6
Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 11/96 (11%)
Query: 752 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA-----GLLCFMHVVCAAGDFNNWNRE 806
TPEQL Y+++E +F ++L LV + L+ + +V A + E
Sbjct: 105 TPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLE 164
Query: 807 EFAYKKLDF------GKWELVLPPNPDGSCKLTHLS 836
F + + G + PP PD + + S
Sbjct: 165 VFPDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTS 200
>gnl|CDD|182252 PRK10122, PRK10122, GalU regulator GalF; Provisional.
Length = 297
Score = 30.6 bits (69), Expect = 4.8
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 4/38 (10%)
Query: 1039 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGT 1076
++Y+VDE AG+ ++ V +HASKN ++ N FD +
Sbjct: 37 IQYIVDEIVAAGIKEIVLV--THASKNAVE--NHFDTS 70
>gnl|CDD|182849 PRK10933, PRK10933, trehalose-6-phosphate hydrolase; Provisional.
Length = 551
Score = 30.9 bits (70), Expect = 5.6
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 1063
+GT + LV + G+ ++LD+V +H S
Sbjct: 77 YGTLDDFDELVAQAKSRGIRIILDMVFNHTS 107
>gnl|CDD|200475 cd11336, AmyAc_MTSase, Alpha amylase catalytic domain found in
maltooligosyl trehalose synthase (MTSase). Maltooligosyl
trehalose synthase (MTSase) domain. MTSase and
maltooligosyl trehalose trehalohydrolase (MTHase) work
together to produce trehalose. MTSase is responsible for
converting the alpha-1,4-glucosidic linkage to an
alpha,alpha-1,1-glucosidic linkage at the reducing end of
the maltooligosaccharide through an intramolecular
transglucosylation reaction, while MTHase hydrolyzes the
penultimate alpha-1,4 linkage of the reducing end,
resulting in the release of trehalose. The Alpha-amylase
family comprises the largest family of glycoside
hydrolases (GH), with the majority of enzymes acting on
starch, glycogen, and related oligo- and polysaccharides.
These proteins catalyze the transformation of alpha-1,4
and alpha-1,6 glucosidic linkages with retention of the
anomeric center. The protein is described as having 3
domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a
loop between the beta 3 strand and alpha 3 helix of A; C
is the C-terminal extension characterized by a Greek key.
The majority of the enzymes have an active site cleft
found between domains A and B where a triad of catalytic
residues (Asp, Glu and Asp) performs catalysis. Other
members of this family have lost the catalytic activity
as in the case of the human 4F2hc, or only have 2
residues that serve as the catalytic nucleophile and the
acid/base, such as Thermus A4 beta-galactosidase with 2
Glu residues (GH42) and human alpha-galactosidase with 2
Asp residues (GH31). The family members are quite
extensive and include: alpha amylase,
maltosyltransferase, cyclodextrin glycotransferase,
maltogenic amylase, neopullulanase, isoamylase,
1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 660
Score = 30.5 bits (70), Expect = 6.0
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 1034 GTPEQLKYLVDECHKAGLYVLLDVVHSH 1061
G E L+ L G+ ++LD+V +H
Sbjct: 60 GGEEGLRRLAAALRAHGMGLILDIVPNH 87
>gnl|CDD|216307 pfam01120, Alpha_L_fucos, Alpha-L-fucosidase.
Length = 320
Score = 30.3 bits (69), Expect = 6.5
Identities = 18/91 (19%), Positives = 27/91 (29%), Gaps = 22/91 (24%)
Query: 1039 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFH-DGPRGTHPLWDSRLF 1097
+ L C K G+ +S + H D D L+
Sbjct: 117 VGELAKACRKNGI--KFGFYYSLLD----------------WHHPDYKVDKEGQEDKGLW 158
Query: 1098 NYSEIEVLRFLLSNLRWYLDEYQFDGFRFDG 1128
N V F + L+ + Y+ D FDG
Sbjct: 159 NQY---VKEFTFNQLKELVTNYKPDILWFDG 186
>gnl|CDD|200483 cd11345, AmyAc_SLC3A2, Alpha amylase catalytic domain found in solute
carrier family 3 member 2 proteins. 4F2 cell-surface
antigen heavy chain (hc) is a protein that in humans is
encoded by the SLC3A2 gene. 4F2hc is a multifunctional
type II membrane glycoprotein involved in amino acid
transport and cell fusion, adhesion, and transformation.
It is related to bacterial alpha-glycosidases, but lacks
alpha-glycosidase activity. The Alpha-amylase family
comprises the largest family of glycoside hydrolases
(GH), with the majority of enzymes acting on starch,
glycogen, and related oligo- and polysaccharides. These
proteins catalyze the transformation of alpha-1,4 and
alpha-1,6 glucosidic linkages with retention of the
anomeric center. The protein is described as having 3
domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a
loop between the beta 3 strand and alpha 3 helix of A; C
is the C-terminal extension characterized by a Greek key.
The majority of the enzymes have an active site cleft
found between domains A and B where a triad of catalytic
residues (Asp, Glu and Asp) performs catalysis. Other
members of this family have lost the catalytic activity
as in the case of the human 4F2hc, or only have 2
residues that serve as the catalytic nucleophile and the
acid/base, such as Thermus A4 beta-galactosidase with 2
Glu residues (GH42) and human alpha-galactosidase with 2
Asp residues (GH31). The family members are quite
extensive and include: alpha amylase,
maltosyltransferase, cyclodextrin glycotransferase,
maltogenic amylase, neopullulanase, isoamylase,
1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 326
Score = 30.1 bits (68), Expect = 6.8
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 1033 FGTPEQLKYLVDECHKAGLYVLLD 1056
GT E L+ HK G+ V+LD
Sbjct: 76 LGTLEDFTSLLTAAHKKGISVVLD 99
>gnl|CDD|165762 PLN00196, PLN00196, alpha-amylase; Provisional.
Length = 428
Score = 30.3 bits (68), Expect = 8.2
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 11/67 (16%)
Query: 1030 AGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTH 1089
A +G QLK L++ H G+ V+ D+V +H + DG + C F G
Sbjct: 85 ASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRTAEHKDGRGIY-----CLFEGGTP--- 136
Query: 1090 PLWDSRL 1096
DSRL
Sbjct: 137 ---DSRL 140
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.140 0.443
Gapped
Lambda K H
0.267 0.0720 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 69,002,548
Number of extensions: 7164456
Number of successful extensions: 11018
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10943
Number of HSP's successfully gapped: 722
Length of query: 1276
Length of database: 10,937,602
Length adjustment: 108
Effective length of query: 1168
Effective length of database: 6,147,370
Effective search space: 7180128160
Effective search space used: 7180128160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (28.8 bits)