BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9004
(237 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AMK|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 702
Score = 241 bits (615), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 114/182 (62%), Positives = 137/182 (75%), Gaps = 3/182 (1%)
Query: 45 GTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFD---GTQACFFHDGPRGTHP 101
GTPE LKYLVD+ H GL VL+DVVHSHAS NV DGLN +D T +FH G RG H
Sbjct: 248 GTPEDLKYLVDKAHSLGLRVLMDVVHSHASNNVTDGLNGYDVGQNTHESYFHTGDRGYHK 307
Query: 102 LWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEY 161
LWDSRLFNY+ EVLRFLLSNLR++++E+ FDGFRFDGVTSMLYH+HG +GF+G+Y EY
Sbjct: 308 LWDSRLFNYANWEVLRFLLSNLRYWMDEFMFDGFRFDGVTSMLYHHHGINKGFTGNYKEY 367
Query: 162 FGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGRPGL 221
F L+ D DA++Y+M+AN +H PE +AEDVSGMP CRPV EGG GFD+RL
Sbjct: 368 FSLDTDVDAIVYMMLANHLMHKLLPEATIVAEDVSGMPVLCRPVDEGGVGFDFRLAMAIP 427
Query: 222 DK 223
D+
Sbjct: 428 DR 429
>pdb|3AML|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 755
Score = 241 bits (615), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 114/182 (62%), Positives = 137/182 (75%), Gaps = 3/182 (1%)
Query: 45 GTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFD---GTQACFFHDGPRGTHP 101
GTPE LKYLVD+ H GL VL+DVVHSHAS NV DGLN +D T +FH G RG H
Sbjct: 248 GTPEDLKYLVDKAHSLGLRVLMDVVHSHASNNVTDGLNGYDVGQNTHESYFHTGDRGYHK 307
Query: 102 LWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEY 161
LWDSRLFNY+ EVLRFLLSNLR++++E+ FDGFRFDGVTSMLYH+HG +GF+G+Y EY
Sbjct: 308 LWDSRLFNYANWEVLRFLLSNLRYWMDEFMFDGFRFDGVTSMLYHHHGINKGFTGNYKEY 367
Query: 162 FGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGRPGL 221
F L+ D DA++Y+M+AN +H PE +AEDVSGMP CRPV EGG GFD+RL
Sbjct: 368 FSLDTDVDAIVYMMLANHLMHKLLPEATIVAEDVSGMPVLCRPVDEGGVGFDFRLAMAIP 427
Query: 222 DK 223
D+
Sbjct: 428 DR 429
>pdb|3K1D|A Chain A, Crystal Structure Of Glycogen Branching Enzyme Synonym:
1,4- Glucan:1,4-Alpha-D-Glucan 6-Glucosyl-Transferase
From Mycob Tuberculosis H37rv
Length = 722
Score = 104 bits (259), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 89/172 (51%), Gaps = 3/172 (1%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 103
FGTP+ + LVD H+AG+ V++D V +H K+ L FDGT D RG W
Sbjct: 309 FGTPDDFRALVDALHQAGIGVIVDWVPAHFPKDAW-ALGRFDGTPLYEHSDPKRGEQLDW 367
Query: 104 DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFG 163
+ +F++ EV FL++N ++L+E+ DG R D V SMLY ++ EG G G
Sbjct: 368 GTYVFDFGRPEVRNFLVANALYWLQEFHIDGLRVDAVASMLYLDYSRPEG--GWTPNVHG 425
Query: 164 LNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYR 215
+ +A+ +L N H P I+TIAE+ + RP GG GF +
Sbjct: 426 GRENLEAVQFLQEMNATAHKVAPGIVTIAEESTPWSGVTRPTNIGGLGFSMK 477
>pdb|1M7X|A Chain A, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|B Chain B, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|C Chain C, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|D Chain D, The X-Ray Crystallographic Structure Of Branching Enzyme
Length = 617
Score = 100 bits (248), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 90/173 (52%), Gaps = 5/173 (2%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPR-GTHPL 102
FGT + +Y +D H AGL V+LD V H + L EFDGT + H PR G H
Sbjct: 201 FGTRDDFRYFIDAAHAAGLNVILDWVPGHFPTDDF-ALAEFDGTN-LYEHSDPREGYHQD 258
Query: 103 WDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYF 162
W++ ++NY EV FL+ N +++E + D R D V SM+Y ++ EG F
Sbjct: 259 WNTLIYNYGRREVSNFLVGNALYWIERFGIDALRVDAVASMIYRDYSRKEG--EWIPNEF 316
Query: 163 GLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYR 215
G + +A+ +L N+ L ++ +T+AE+ + P RP GG GF Y+
Sbjct: 317 GGRENLEAIEFLRNTNRILGEQVSGAVTMAEESTDFPGVSRPQDMGGLGFWYK 369
>pdb|1EH9|A Chain A, Crystal Structure Of Sulfolobus Solfataricus
Glycosyltrehalose Trehalohydrolase
pdb|3VGB|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(Gthase) From Sulfolobus Solfataricus Km1
Length = 558
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 16/106 (15%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASK--NVLDGLNEFDGTQACFFHDGPRGTHP 101
+G PE + LVDE HK GL V+LDVV++H N + L + + + P G
Sbjct: 164 YGGPEGFRKLVDEAHKKGLGVILDVVYNHVGPEGNYMVKLGPYFSQK----YKTPWGL-- 217
Query: 102 LWDSRLFNYSEI---EVLRFLLSNLRWYLEEYQFDGFRFDGVTSML 144
FN+ + EV +F+L N+ ++++EY DGFR D V +++
Sbjct: 218 -----TFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLDAVHAII 258
>pdb|3VGG|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(E283q) Complexed With Maltoheptaose
pdb|3VGH|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(E283q) Complexed With Maltotriosyltrehalose
Length = 558
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 16/106 (15%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASK--NVLDGLNEFDGTQACFFHDGPRGTHP 101
+G PE + LVDE HK GL V+LDVV++H N + L + + + P G
Sbjct: 164 YGGPEGFRKLVDEAHKKGLGVILDVVYNHVGPEGNYMVKLGPYFSQK----YKTPWGL-- 217
Query: 102 LWDSRLFNYSEI---EVLRFLLSNLRWYLEEYQFDGFRFDGVTSML 144
FN+ + EV +F+L N+ ++++EY DGFR D V +++
Sbjct: 218 -----TFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLDAVHAII 258
>pdb|1EHA|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
From Sulfolobus Solfataricus
Length = 558
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 16/106 (15%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASK--NVLDGLNEFDGTQACFFHDGPRGTHP 101
+G PE + LVDE HK GL V+LDVV++H N + L + + + P G
Sbjct: 164 YGGPEGFRKLVDEAHKKGLGVILDVVYNHVGPEGNYMVKLGPYFSQK----YKTPWGL-- 217
Query: 102 LWDSRLFNYSEI---EVLRFLLSNLRWYLEEYQFDGFRFDGVTSML 144
FN+ + EV +F+L N+ ++++EY DGFR D V +++
Sbjct: 218 -----TFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLDAVHAII 258
>pdb|3VGD|A Chain A, Ctystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252e)
Length = 558
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 16/106 (15%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASK--NVLDGLNEFDGTQACFFHDGPRGTHP 101
+G PE + LVDE HK GL V+LDVV++H N + L + + + P G
Sbjct: 164 YGGPEGFRKLVDEAHKKGLGVILDVVYNHVGPEGNYMVKLGPYFSQK----YKTPWGL-- 217
Query: 102 LWDSRLFNYSEI---EVLRFLLSNLRWYLEEYQFDGFRFDGVTSML 144
FN+ + EV +F+L N+ ++++EY DGFR + V +++
Sbjct: 218 -----TFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLEAVHAII 258
>pdb|3VGE|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252s)
pdb|3VGF|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252s) Complexed With Maltotriosyltrehalose
Length = 558
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 16/106 (15%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASK--NVLDGLNEFDGTQACFFHDGPRGTHP 101
+G PE + LVDE HK GL V+LDVV++H N + L + + + P G
Sbjct: 164 YGGPEGFRKLVDEAHKKGLGVILDVVYNHVGPEGNYMVKLGPYFSQK----YKTPWGL-- 217
Query: 102 LWDSRLFNYSEI---EVLRFLLSNLRWYLEEYQFDGFRFDGVTSML 144
FN+ + EV +F+L N+ ++++EY DGFR V +++
Sbjct: 218 -----TFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLSAVHAII 258
>pdb|2BHU|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase
Length = 602
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 8/100 (8%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 103
+G PE L LVD H+ GL V LDVV++H + N +F D W
Sbjct: 189 YGRPEDLMALVDAAHRLGLGVFLDVVYNHFGPSG----NYLSSYAPSYFTD---RFSSAW 241
Query: 104 DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSM 143
L +Y+E + R++ N R +L +Y FDG R D M
Sbjct: 242 GMGL-DYAEPHMRRYVTGNARMWLRDYHFDGLRLDATPYM 280
>pdb|1J0J|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
Maltotetraose
pdb|1J0J|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
Maltotetraose
pdb|1J0K|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
Isopanose
pdb|1J0K|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
Isopanose
Length = 588
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 67/152 (44%), Gaps = 20/152 (13%)
Query: 7 GTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAG 61
G + L YLVD + +F +P KY D FG E LK L+D CH+ G
Sbjct: 177 GIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHEKG 236
Query: 62 LYVLLDVVHSHASKNVLDGLNEFDGTQACFF------HDGPRGTHPL--WDSRLF----- 108
+ V+LD V +H + + ++ + H+ P T P +D+ F
Sbjct: 237 IRVMLDAVFNHCGYEFAPFQDVWKNGESSKYKDWFHIHEFPLQTEPRPNYDTFAFVPQMP 296
Query: 109 --NYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 138
N + EV R+LL +++ E+ DG+R D
Sbjct: 297 KLNTANPEVKRYLLDVATYWIREFDIDGWRLD 328
>pdb|1J0H|A Chain A, Crystal Structure Of Bacillus Stearothermophilus
Neopullulanase
pdb|1J0H|B Chain B, Crystal Structure Of Bacillus Stearothermophilus
Neopullulanase
pdb|1J0I|A Chain A, Crystal Structure Of Neopullulanase Complex With Panose
pdb|1J0I|B Chain B, Crystal Structure Of Neopullulanase Complex With Panose
Length = 588
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 67/152 (44%), Gaps = 20/152 (13%)
Query: 7 GTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAG 61
G + L YLVD + +F +P KY D FG E LK L+D CH+ G
Sbjct: 177 GIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHEKG 236
Query: 62 LYVLLDVVHSHASKNVLDGLNEFDGTQACFF------HDGPRGTHPL--WDSRLF----- 108
+ V+LD V +H + + ++ + H+ P T P +D+ F
Sbjct: 237 IRVMLDAVFNHCGYEFAPFQDVWKNGESSKYKDWFHIHEFPLQTEPRPNYDTFAFVPQMP 296
Query: 109 --NYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 138
N + EV R+LL +++ E+ DG+R D
Sbjct: 297 KLNTANPEVKRYLLDVATYWIREFDIDGWRLD 328
>pdb|4GKL|A Chain A, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
pdb|4GKL|B Chain B, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
Length = 422
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 13/123 (10%)
Query: 21 KAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS-KNVLD 79
+ G G+P ++ D L GT K V H+ +YVL+D+V +HA+ NVL
Sbjct: 55 RKGTLGSPYAIR---DYYEIDLLIGTKGDFKKFVKRAHELNMYVLMDMVLNHAAVDNVL- 110
Query: 80 GLNEFDGTQACFFHD---GPRGTHPLWDSRL-FNYSEIEVLRFLLSNLRWYLEEYQFDGF 135
F D P P W + F+YS E+ ++++ +R+++EE+ DGF
Sbjct: 111 ----VKKHPEWFLRDENGNPTRKVPDWSDVVDFDYSNGELREYMINMMRYWVEEFDVDGF 166
Query: 136 RFD 138
R D
Sbjct: 167 RCD 169
>pdb|2BHY|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase In Complex With
Trehalose
pdb|2BHZ|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase In Complex With
Maltose
pdb|2BXY|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BXZ|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY0|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY1|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY2|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY3|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
Length = 602
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 103
+G PE L LVD H+ GL V LDVV++H + N +F D W
Sbjct: 189 YGRPEDLXALVDAAHRLGLGVFLDVVYNHFGPSG----NYLSSYAPSYFTD---RFSSAW 241
Query: 104 DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGV 140
L +Y+E R++ N R +L +Y FDG R D
Sbjct: 242 GXGL-DYAEPHXRRYVTGNARXWLRDYHFDGLRLDAT 277
>pdb|3FAW|A Chain A, Crystal Structure Of The Group B Streptococcus Pullulanase
Sap
pdb|3FAX|A Chain A, The Crystal Structure Of Gbs Pullulanase Sap In Complex
With Maltotetraose
Length = 877
Score = 47.4 bits (111), Expect = 7e-06, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 13/95 (13%)
Query: 49 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFH----DG-PRGTHPLW 103
+LK L+ + HK G+ V+LDVV++H +K L F+ + ++H DG PR +
Sbjct: 371 ELKQLIHDIHKRGMGVILDVVYNHTAKTYL-----FEDIEPNYYHFMNEDGSPRES--FG 423
Query: 104 DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 138
RL + R L+ ++++ E++ DGFRFD
Sbjct: 424 GGRLGTTHAMS-RRVLVDSIKYLTSEFKVDGFRFD 457
>pdb|2VNC|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VNC|B Chain B, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VR5|A Chain A, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VR5|B Chain B, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VUY|A Chain A, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
pdb|2VUY|B Chain B, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
Length = 718
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 9/124 (7%)
Query: 29 EQLKYLVDECHKAG---LFGTPEQLKYLVDECHKAGLYVLLDVVHSHASK-NVLDGLNEF 84
+ + + EC + L G K +V+E H AG+ V++DVV++H ++ N L F
Sbjct: 245 DPINFFSPECRYSSTGCLGGQVLSFKKMVNELHNAGIEVIIDVVYNHTAEGNHLGPTLSF 304
Query: 85 DGT-QACFFHDGPRGTHPLWD----SRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDG 139
G ++ P D N S V++ +L +LR+++ E DGFRFD
Sbjct: 305 RGIDNTAYYMLQPDNKRYYLDFTGTGNTLNLSHPRVIQMVLDSLRYWVTEMHVDGFRFDL 364
Query: 140 VTSM 143
++
Sbjct: 365 AAAL 368
>pdb|1GVI|A Chain A, Thermus Maltogenic Amylase In Complex With Beta-Cd
pdb|1GVI|B Chain B, Thermus Maltogenic Amylase In Complex With Beta-Cd
Length = 588
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 61/152 (40%), Gaps = 20/152 (13%)
Query: 7 GTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAG 61
G + L YL D + +F P KY D FG E LK LV CH+ G
Sbjct: 177 GIIDHLDYLADLGITGIYLTPIFRAPSNHKYDTADYFEIDPHFGDKETLKTLVKRCHEKG 236
Query: 62 LYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDG------PRGTHPL--WDSRLF----- 108
+ V+LD V +H + A + D P T P +D+ F
Sbjct: 237 IRVMLDAVFNHCGYEFAPFQDVLKNGAASRYKDWFHIREFPLQTEPRPNYDTFAFVPHMP 296
Query: 109 --NYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 138
N + EV R+LL +++ E+ DG+R D
Sbjct: 297 KLNTAHPEVKRYLLDVATYWIREFDIDGWRLD 328
>pdb|1SMA|A Chain A, Crystal Structure Of A Maltogenic Amylase
pdb|1SMA|B Chain B, Crystal Structure Of A Maltogenic Amylase
Length = 588
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 61/152 (40%), Gaps = 20/152 (13%)
Query: 7 GTPEQLKYLVD----ECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAG 61
G + L YL D + +F P KY D FG E LK LV CH+ G
Sbjct: 177 GIIDHLDYLADLGITGIYLTPIFRAPSNHKYDTADYFEIDPHFGDKETLKTLVKRCHEKG 236
Query: 62 LYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDG------PRGTHPL--WDSRLF----- 108
+ V+LD V +H + A + D P T P +D+ F
Sbjct: 237 IRVMLDAVFNHCGYEFAPFQDVLKNGAASRYKDWFHIREFPLQTEPRPNYDTFAFVPHMP 296
Query: 109 --NYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 138
N + EV R+LL +++ E+ DG+R D
Sbjct: 297 KLNTAHPEVKRYLLDVATYWIREFDIDGWRLD 328
>pdb|2YA0|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 714
Score = 45.4 bits (106), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 19/98 (19%)
Query: 49 QLKYLVDECHKAGLYVLLDVVHSHASK-NVLDGLN-------EFDGTQACFFHDGPRGTH 100
+ K L++E HK G+ +LDVV++H +K ++ + L + DGT F G GT
Sbjct: 256 EFKNLINEIHKRGMGAILDVVYNHTAKVDLFEDLEPNYYHFMDADGTPRTSFGGGRLGTT 315
Query: 101 PLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 138
RL L+ ++++ ++ Y+ DGFRFD
Sbjct: 316 HHMTKRL-----------LIDSIKYLVDTYKVDGFRFD 342
>pdb|2YA1|A Chain A, Product Complex Of A Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 1014
Score = 45.1 bits (105), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 19/98 (19%)
Query: 49 QLKYLVDECHKAGLYVLLDVVHSHASK-NVLDGLN-------EFDGTQACFFHDGPRGTH 100
+ K L++E HK G+ +LDVV++H +K ++ + L + DGT F G GT
Sbjct: 563 EFKNLINEIHKRGMGAILDVVYNHTAKVDLFEDLEPNYYHFMDADGTPRTSFGGGRLGTT 622
Query: 101 PLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 138
RL L+ ++++ ++ Y+ DGFRFD
Sbjct: 623 HHMTKRL-----------LIDSIKYLVDTYKVDGFRFD 649
>pdb|2YA2|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua In Complex With An
Inhibitor
Length = 708
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 19/98 (19%)
Query: 49 QLKYLVDECHKAGLYVLLDVVHSHASK-NVLDGLN-------EFDGTQACFFHDGPRGTH 100
+ K L++E HK G+ +LDVV++H +K ++ + L + DGT F G GT
Sbjct: 257 EFKNLINEIHKRGMGAILDVVYNHTAKVDLFEDLEPNYYHFMDADGTPRTSFGGGRLGT- 315
Query: 101 PLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 138
+ R L+ ++++ ++ Y+ DGFRFD
Sbjct: 316 ----------THHMTKRLLIDSIKYLVDTYKVDGFRFD 343
>pdb|3M07|A Chain A, 1.4 Angstrom Resolution Crystal Structure Of Putative
Alpha Amylase From Salmonella Typhimurium
Length = 618
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSH--ASKNVLDGLNEFDGTQACFFHDGPRGTHP 101
+GTP+ K +D H GL V+LD+V +H N L L FFH +
Sbjct: 199 YGTPDDFKAFIDAAHGYGLSVVLDIVLNHFGPEGNYLPLL------APAFFH---KERMT 249
Query: 102 LWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSM 143
W + + Y V R+++ ++L EY DG RFD + +
Sbjct: 250 PWGNGI-AYDVDAVRRYIIEAPLYWLTEYHLDGLRFDAIDQI 290
>pdb|2WSK|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Glgx From
Escherichia Coli K-12
Length = 657
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 48 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG----LNEFDGTQACFFHDGPRGTHPLW 103
++ + + HKAG+ V+LD+V +H+++ LDG L D + + G + W
Sbjct: 242 DEFRDAIKALHKAGIEVILDIVLNHSAELDLDGPLFSLRGIDNRSYYWIRED--GDYHNW 299
Query: 104 D--SRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSM 143
N S V+ + + LR+++E DGFRFD M
Sbjct: 300 TGCGNTLNLSHPAVVDYASACLRYWVETCHVDGFRFDLAAVM 341
>pdb|2E8Y|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168
pdb|2E8Y|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168
pdb|2E8Z|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Alpha-Cyclodextrin
pdb|2E8Z|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Alpha-Cyclodextrin
pdb|2E9B|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Maltose
pdb|2E9B|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Maltose
Length = 718
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 49 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLF 108
+LK +++ H+ GL V+LDVV +H K + F+ T +F P + +
Sbjct: 317 ELKQMINTLHQHGLRVILDVVFNHVYKR---ENSPFEKTVPGYFFRHDECGKPSNGTGVG 373
Query: 109 N--YSEIEVLR-FLLSNLRWYLEEYQFDGFRFD 138
N SE + R F+ + ++LEEY DGFRFD
Sbjct: 374 NDIASERRMARKFIADCVVYWLEEYNVDGFRFD 406
>pdb|1EA9|C Chain C, Cyclomaltodextrinase
pdb|1EA9|D Chain D, Cyclomaltodextrinase
Length = 583
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 24/115 (20%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLDGLNEFDGTQ-ACFFH------ 93
FG + LK LVD CH+ G+ VLLD V +H+ + +D L + ++ +FH
Sbjct: 215 FGDKDTLKKLVDLCHERGIRVLLDAVFNHSGRTFPPFVDVLKNGEKSKYKDWFHIRSLPL 274
Query: 94 ---DGPRGTHPLWDSRLF-------NYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 138
DG P +D+ F N +V +LL +++ E DG+R D
Sbjct: 275 EVVDGI----PTYDTFAFEPLMPKLNTEHPDVKEYLLKAAEYWIRETGIDGWRLD 325
>pdb|3DHU|A Chain A, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|B Chain B, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|C Chain C, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|D Chain D, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
Length = 449
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 86/202 (42%), Gaps = 42/202 (20%)
Query: 16 VDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASK 75
+ E ++ G G+P +K D +GT K L D H+ G+ V+LD+V++H S
Sbjct: 55 IGEVNRKGTLGSPYAIK---DYRGINPEYGTLADFKALTDRAHELGMKVMLDIVYNHTSP 111
Query: 76 NVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFN----YSEIEVLRFLLSNLRWYLEEYQ 131
+ + + F+HD D +L N +S+++ L + L W +YQ
Sbjct: 112 DSVLATEHPE----WFYHDA--------DGQLTNKVGDWSDVKDLDYGHHEL-W---QYQ 155
Query: 132 FDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITI 191
D ++LY +S D Y L + + A K ++ KYPE + +
Sbjct: 156 ID--------TLLY--------WSQFVDGYRCDVAPLVPLDFWLEARKQVNAKYPETLWL 199
Query: 192 AEDV-SGMPASCRPVTEGGTGF 212
AE SG R ++G TG
Sbjct: 200 AESAGSGFIEELR--SQGYTGL 219
>pdb|2WAN|A Chain A, Pullulanase From Bacillus Acidopullulyticus
Length = 921
Score = 35.8 bits (81), Expect = 0.020, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 12/102 (11%)
Query: 46 TPE------QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGT 99
TPE +LK L+ H+ + V +DVV++H + +V+ +++FD +++
Sbjct: 524 TPEGTARITELKQLIQSLHQQRIGVNMDVVYNH-TFDVM--VSDFDKIVPQYYYRTDSNG 580
Query: 100 HPLWDSRLFNYSEIE---VLRFLLSNLRWYLEEYQFDGFRFD 138
+ S N E +F+L ++ +++ EY DGFRFD
Sbjct: 581 NYTNGSGXGNEFATEHPMAQKFVLDSVNYWVNEYHVDGFRFD 622
>pdb|2ZE0|A Chain A, Alpha-glucosidase Gsj
Length = 555
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 54/131 (41%), Gaps = 32/131 (24%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLDGLNEFDGTQACFF--HDGPRG 98
FGT + L+ + H+ GL V+LD+V +H S ++ + D + ++ DG G
Sbjct: 75 FGTMDDFDELLAQAHRRGLKVILDLVINHTSDEHPWFIESRSSRDNPKRDWYIWRDGKDG 134
Query: 99 THP-LWDSRL-------------------------FNYSEIEVLRFLLSNLRWYLEEYQF 132
P W+S N+ EV + L + W+L++
Sbjct: 135 REPNNWESIFGGSAWQYDERTGQYYLHIFDVKQPDLNWENSEVRQALYEMVNWWLDK-GI 193
Query: 133 DGFRFDGVTSM 143
DGFR D ++ +
Sbjct: 194 DGFRIDAISHI 204
>pdb|1WZL|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt R469l
pdb|1WZL|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt R469l
Length = 585
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 58/145 (40%), Gaps = 19/145 (13%)
Query: 7 GTPEQLKYL----VDECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAG 61
G ++L YL V + +F +P KY D FG + LVDE H+ G
Sbjct: 174 GVIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRG 233
Query: 62 LYVLLDVVHSHAS------KNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEV 115
+ ++LD V +HA ++VL + F D P+ + NY V
Sbjct: 234 IKIILDAVFNHAGDQFFAFRDVLQKGEQSRYKDWFFIED-----FPVSKTSRTNYETFAV 288
Query: 116 LRFLLSNLRW---YLEEYQFDGFRF 137
+ LR ++EY FD RF
Sbjct: 289 QVPAMPKLRTENPEVKEYLFDVARF 313
>pdb|1G1Y|A Chain A, Crystal Structure Of Alpha-Amylase Ii (Tvaii) From
Thermoactinomyces Vulgaris R-47 And Beta-Cyclodextrin
Complex
pdb|1G1Y|B Chain B, Crystal Structure Of Alpha-Amylase Ii (Tvaii) From
Thermoactinomyces Vulgaris R-47 And Beta-Cyclodextrin
Complex
Length = 585
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 58/145 (40%), Gaps = 19/145 (13%)
Query: 7 GTPEQLKYL----VDECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAG 61
G ++L YL V + +F +P KY D FG + LVDE H+ G
Sbjct: 174 GVIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRG 233
Query: 62 LYVLLDVVHSHAS------KNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEV 115
+ ++LD V +HA ++VL + F D P+ + NY V
Sbjct: 234 IKIILDAVFNHAGDQFFAFRDVLQKGEQSRYKDWFFIED-----FPVSKTSRTNYETFAV 288
Query: 116 LRFLLSNLRW---YLEEYQFDGFRF 137
+ LR ++EY FD RF
Sbjct: 289 QVPAMPKLRTENPEVKEYLFDVARF 313
>pdb|1WZK|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt D465n
pdb|1WZK|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt D465n
Length = 585
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 58/145 (40%), Gaps = 19/145 (13%)
Query: 7 GTPEQLKYL----VDECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAG 61
G ++L YL V + +F +P KY D FG + LVDE H+ G
Sbjct: 174 GVIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRG 233
Query: 62 LYVLLDVVHSHAS------KNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEV 115
+ ++LD V +HA ++VL + F D P+ + NY V
Sbjct: 234 IKIILDAVFNHAGDQFFAFRDVLQKGEQSRYKDWFFIED-----FPVSKTSRTNYETFAV 288
Query: 116 LRFLLSNLRW---YLEEYQFDGFRF 137
+ LR ++EY FD RF
Sbjct: 289 QVPAMPKLRTENPEVKEYLFDVARF 313
>pdb|1WZM|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii)
Mutatnt R469k
pdb|1WZM|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii)
Mutatnt R469k
Length = 585
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 58/145 (40%), Gaps = 19/145 (13%)
Query: 7 GTPEQLKYL----VDECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAG 61
G ++L YL V + +F +P KY D FG + LVDE H+ G
Sbjct: 174 GVIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRG 233
Query: 62 LYVLLDVVHSHAS------KNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEV 115
+ ++LD V +HA ++VL + F D P+ + NY V
Sbjct: 234 IKIILDAVFNHAGDQFFAFRDVLQKGEQSRYKDWFFIED-----FPVSKTSRTNYETFAV 288
Query: 116 LRFLLSNLRW---YLEEYQFDGFRF 137
+ LR ++EY FD RF
Sbjct: 289 QVPAMPKLRTENPEVKEYLFDVARF 313
>pdb|1JL8|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Beta-Cyclodextrin
Based On A Co- Crystallization With Methyl
Beta-Cyclodextrin
pdb|1JL8|B Chain B, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Beta-Cyclodextrin
Based On A Co- Crystallization With Methyl
Beta-Cyclodextrin
pdb|1JIB|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Maltotetraose Based
On A Crystal Soaked With Maltohexaose.
pdb|1JIB|B Chain B, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Maltotetraose Based
On A Crystal Soaked With Maltohexaose.
pdb|1VB9|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Ii (Tva Ii) Complexed With
Transglycosylated Product
pdb|1VB9|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Ii (Tva Ii) Complexed With
Transglycosylated Product
pdb|2D2O|A Chain A, Structure Of A Complex Of Thermoactinomyces Vulgaris R-47
Alpha-Amylase 2 With Maltohexaose Demonstrates The
Important Role Of Aromatic Residues At The Reducing End
Of The Substrate Binding Cleft
pdb|2D2O|B Chain B, Structure Of A Complex Of Thermoactinomyces Vulgaris R-47
Alpha-Amylase 2 With Maltohexaose Demonstrates The
Important Role Of Aromatic Residues At The Reducing End
Of The Substrate Binding Cleft
Length = 585
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 58/145 (40%), Gaps = 19/145 (13%)
Query: 7 GTPEQLKYL----VDECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAG 61
G ++L YL V + +F +P KY D FG + LVDE H+ G
Sbjct: 174 GVIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRG 233
Query: 62 LYVLLDVVHSHAS------KNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEV 115
+ ++LD V +HA ++VL + F D P+ + NY V
Sbjct: 234 IKIILDAVFNHAGDQFFAFRDVLQKGEQSRYKDWFFIED-----FPVSKTSRTNYETFAV 288
Query: 116 LRFLLSNLRW---YLEEYQFDGFRF 137
+ LR ++EY FD RF
Sbjct: 289 QVPAMPKLRTENPEVKEYLFDVARF 313
>pdb|1VFM|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ALPHA-Cyclodextrin Complex
pdb|1VFM|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ALPHA-Cyclodextrin Complex
pdb|1VFO|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2BETA-Cyclodextrin Complex
pdb|1VFO|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2BETA-Cyclodextrin Complex
pdb|1VFU|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Amylase 2GAMMA-Cyclodextrin Complex
pdb|1VFU|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Amylase 2GAMMA-Cyclodextrin Complex
Length = 585
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 58/145 (40%), Gaps = 19/145 (13%)
Query: 7 GTPEQLKYL----VDECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAG 61
G ++L YL V + +F +P KY D FG + LVDE H+ G
Sbjct: 174 GVIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRG 233
Query: 62 LYVLLDVVHSHAS------KNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEV 115
+ ++LD V +HA ++VL + F D P+ + NY V
Sbjct: 234 IKIILDAVFNHAGDQFFAFRDVLQKGEQSRYKDWFFIED-----FPVSKTSRTNYETFAV 288
Query: 116 LRFLLSNLRW---YLEEYQFDGFRF 137
+ LR ++EY FD RF
Sbjct: 289 QVPAMPKLRTENPEVKEYLFDVARF 313
>pdb|1BVZ|A Chain A, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris
R- 47
pdb|1BVZ|B Chain B, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris
R- 47
pdb|1JI2|A Chain A, Improved X-Ray Structure Of Thermoactinomyces Vulgaris
R-47 Alpha-Amylase 2
pdb|1JI2|B Chain B, Improved X-Ray Structure Of Thermoactinomyces Vulgaris
R-47 Alpha-Amylase 2
pdb|3A6O|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ACARBOSE COMPLEX
pdb|3A6O|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ACARBOSE COMPLEX
Length = 585
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 58/145 (40%), Gaps = 19/145 (13%)
Query: 7 GTPEQLKYL----VDECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAG 61
G ++L YL V + +F +P KY D FG + LVDE H+ G
Sbjct: 174 GVIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRG 233
Query: 62 LYVLLDVVHSHAS------KNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEV 115
+ ++LD V +HA ++VL + F D P+ + NY V
Sbjct: 234 IKIILDAVFNHAGDQFFAFRDVLQKGEQSRYKDWFFIED-----FPVSKTSRTNYETFAV 288
Query: 116 LRFLLSNLRW---YLEEYQFDGFRF 137
+ LR ++EY FD RF
Sbjct: 289 QVPAMPKLRTENPEVKEYLFDVARF 313
>pdb|1JF5|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2 Mutant F286a
pdb|1JF5|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2 Mutant F286a
Length = 585
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 58/145 (40%), Gaps = 19/145 (13%)
Query: 7 GTPEQLKYL----VDECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAG 61
G ++L YL V + +F +P KY D FG + LVDE H+ G
Sbjct: 174 GVIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRG 233
Query: 62 LYVLLDVVHSHAS------KNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEV 115
+ ++LD V +HA ++VL + F D P+ + NY V
Sbjct: 234 IKIILDAVFNHAGDQFFAFRDVLQKGEQSRYKDWFFIED-----FPVSKTSRTNYETAAV 288
Query: 116 LRFLLSNLRW---YLEEYQFDGFRF 137
+ LR ++EY FD RF
Sbjct: 289 QVPAMPKLRTENPEVKEYLFDVARF 313
>pdb|1JF6|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Mutant F286y
pdb|1JF6|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Mutant F286y
Length = 585
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 7 GTPEQLKYL----VDECHKAGLFGTPEQLKY-LVDECHKAGLFGTPEQLKYLVDECHKAG 61
G ++L YL V + +F +P KY D FG + LVDE H+ G
Sbjct: 174 GVIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRG 233
Query: 62 LYVLLDVVHSHA 73
+ ++LD V +HA
Sbjct: 234 IKIILDAVFNHA 245
>pdb|2GB3|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|B Chain B, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|C Chain C, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|D Chain D, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|E Chain E, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|F Chain F, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
Length = 409
Score = 34.7 bits (78), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 5 GFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYV 64
GF P+ L+ ++E K + P C+ G+ ++ +YLV+ + GL++
Sbjct: 160 GFAIPQNLESFINERTKGIVLSNP---------CNPTGVVYGKDEXRYLVEIAERHGLFL 210
Query: 65 LLDVVHSH 72
++D V+S
Sbjct: 211 IVDEVYSE 218
>pdb|1AVA|A Chain A, Amy2BASI PROTEIN-Protein Complex From Barley Seed
pdb|1AVA|B Chain B, Amy2BASI PROTEIN-Protein Complex From Barley Seed
pdb|1AMY|A Chain A, Crystal And Molecular Structure Of Barley Alpha-Amylase
pdb|1BG9|A Chain A, Barley Alpha-Amylase With Substrate Analogue Acarbose
Length = 403
Score = 33.9 bits (76), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 46/119 (38%), Gaps = 21/119 (17%)
Query: 41 AGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF----DGTQACFFHDGP 96
A +G QLK L+ H G+ + D+V +H + DG + GT GP
Sbjct: 61 ASKYGNKAQLKSLIGALHGKGVKAIADIVINHRTAEHKDGRGIYCIFEGGTPDARLDWGP 120
Query: 97 ----RGTHPLWD-------------SRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 138
R P D + ++ + V + L+ L W + FDG+RFD
Sbjct: 121 HMICRDDRPYADGTGNPDTGADFGAAPDIDHLNLRVQKELVEWLNWLKADIGFDGWRFD 179
>pdb|2AAA|A Chain A, Calcium Binding In Alpha-Amylases: An X-Ray Diffraction
Study At 2.1 Angstroms Resolution Of Two Enzymes From
Aspergillus
Length = 484
Score = 33.9 bits (76), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSH 72
FGT + LK L D H G+Y+++DVV H
Sbjct: 94 FGTADNLKSLSDALHARGMYLMVDVVPDH 122
>pdb|1J32|A Chain A, Aspartate Aminotransferase From Phormidium Lapideum
pdb|1J32|B Chain B, Aspartate Aminotransferase From Phormidium Lapideum
Length = 388
Score = 31.2 bits (69), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 8 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLD 67
+PEQ++ + K +F TP + G+ TP++++ + +AGL+VL D
Sbjct: 152 SPEQIRQAITPKTKLLVFNTPS---------NPTGMVYTPDEVRAIAQVAVEAGLWVLSD 202
Query: 68 VVH 70
++
Sbjct: 203 EIY 205
>pdb|2GUY|A Chain A, Orthorhombic Crystal Structure (Space Group P21212) Of
Aspergillus Niger Alpha-Amylase At 1.6 A Resolution
pdb|2GVY|A Chain A, Monoclinic Crystal Form Of Aspergillus Niger Alpha-Amylase
In Complex With Maltose At 1.8 A Resolution
pdb|2GVY|B Chain B, Monoclinic Crystal Form Of Aspergillus Niger Alpha-Amylase
In Complex With Maltose At 1.8 A Resolution
pdb|6TAA|A Chain A, Structure And Molecular Model Refinement Of Aspergillus
Oryzae (Taka) Alpha-Amylase: An Application Of The
Simulated-Annealing Method
pdb|7TAA|A Chain A, Family 13 Alpha Amylase In Complex With Acarbose
pdb|3KWX|A Chain A, Chemically Modified Taka Alpha-Amylase
Length = 478
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSH 72
+GT + LK L H+ G+Y+++DVV +H
Sbjct: 94 YGTADDLKALSSALHERGMYLMVDVVANH 122
>pdb|1WZA|A Chain A, Crystal Structure Of Alpha-Amylase From H.Orenii
Length = 488
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 33/168 (19%)
Query: 7 GTPEQLKYL-VDECHKAGLFGTPEQLKYLVDECHKAGL-FGTPEQLKYLVDECHKAGLYV 64
G PE + L V+ +F +P Y V + +K +GT E LV+ H+ G+ V
Sbjct: 39 GDPETIADLGVNGIWLMPIFKSPSYHGYDVTDYYKINPDYGTLEDFHKLVEAAHQRGIKV 98
Query: 65 LLDVVHSHAS-------KNVLDGLNEF------------------DGTQACFFHDGPRGT 99
++D+ +H S K D +E+ DG + +H P G
Sbjct: 99 IIDLPINHTSERHPWFLKASRDKNSEYRDYYVWAGPDTDTKETKLDGGRV--WHYSPTGM 156
Query: 100 H--PLWDSRL-FNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSML 144
+ W NY+ EV ++ +++L++ DGFR DG +
Sbjct: 157 YYGYFWSGMPDLNYNNPEVQEKVIGIAKYWLKQ-GVDGFRLDGAMHIF 203
>pdb|2Y4S|A Chain A, Barley Limit Dextrinase In Complex With Beta-Cyclodextrin
pdb|2Y5E|A Chain A, Barley Limit Dextrinase In Complex With Alpha-Cyclodextrin
pdb|4AIO|A Chain A, Crystal Structure Of The Starch Debranching Enzyme Barley
Limit Dextrinase
Length = 884
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 49 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLF 108
+ + +V ++ GL V++DVV++H + G++ ++ + +S
Sbjct: 380 EYRQMVQALNRIGLRVVMDVVYNHLDSSGPCGISSVLDKIVPGYYVRRDTNGQIENSAAM 439
Query: 109 NYSEIE---VLRFLLSNLRWYLEEYQFDGFRFD 138
N + E V R ++ +L + Y+ DGFRFD
Sbjct: 440 NNTASEHFMVDRLIVDDLLNWAVNYKVDGFRFD 472
>pdb|2FGZ|A Chain A, Crystal Structure Analysis Of Apo Pullulanase From
Klebsiella Pneumoniae
Length = 926
Score = 31.2 bits (69), Expect = 0.55, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 35/104 (33%)
Query: 61 GLYVLLDVVHSHAS-------KNVLDG--------LNEFDGT---QACFFHDGPRGTHPL 102
G+ V++DVV++H + +VLD LNE G+ C P
Sbjct: 439 GMNVIMDVVYNHTNAAGPTDRTSVLDKIVPWYYQRLNETTGSVESATCCSDSAP------ 492
Query: 103 WDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYH 146
+ R+F + + +L + +Y+ DGFRFD MLYH
Sbjct: 493 -EHRMF-------AKLIADSLAVWTTDYKIDGFRFD---LMLYH 525
>pdb|2FHB|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltose
pdb|2FHC|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltotriose
pdb|2FHF|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltotetraose
Length = 1083
Score = 31.2 bits (69), Expect = 0.55, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 35/104 (33%)
Query: 61 GLYVLLDVVHSHAS-------KNVLDG--------LNEFDGT---QACFFHDGPRGTHPL 102
G+ V++DVV++H + +VLD LNE G+ C P
Sbjct: 596 GMNVIMDVVYNHTNAAGPTDRTSVLDKIVPWYYQRLNETTGSVESATCCSDSAP------ 649
Query: 103 WDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYH 146
+ R+F + + +L + +Y+ DGFRFD MLYH
Sbjct: 650 -EHRMF-------AKLIADSLAVWTTDYKIDGFRFD---LMLYH 682
>pdb|2FH6|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Glucose
Length = 920
Score = 31.2 bits (69), Expect = 0.55, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 35/104 (33%)
Query: 61 GLYVLLDVVHSHAS-------KNVLDG--------LNEFDGT---QACFFHDGPRGTHPL 102
G+ V++DVV++H + +VLD LNE G+ C P
Sbjct: 433 GMNVIMDVVYNHTNAAGPTDRTSVLDKIVPWYYQRLNETTGSVESATCCSDSAP------ 486
Query: 103 WDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYH 146
+ R+F + + +L + +Y+ DGFRFD MLYH
Sbjct: 487 -EHRMF-------AKLIADSLAVWTTDYKIDGFRFD---LMLYH 519
>pdb|2FH8|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Isomaltose
Length = 922
Score = 31.2 bits (69), Expect = 0.55, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 35/104 (33%)
Query: 61 GLYVLLDVVHSHAS-------KNVLDG--------LNEFDGT---QACFFHDGPRGTHPL 102
G+ V++DVV++H + +VLD LNE G+ C P
Sbjct: 435 GMNVIMDVVYNHTNAAGPTDRTSVLDKIVPWYYQRLNETTGSVESATCCSDSAP------ 488
Query: 103 WDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYH 146
+ R+F + + +L + +Y+ DGFRFD MLYH
Sbjct: 489 -EHRMF-------AKLIADSLAVWTTDYKIDGFRFD---LMLYH 521
>pdb|2TAA|A Chain A, Structure And Possible Catalytic Residues Of Taka-Amylase
A
pdb|2TAA|B Chain B, Structure And Possible Catalytic Residues Of Taka-Amylase
A
pdb|2TAA|C Chain C, Structure And Possible Catalytic Residues Of Taka-Amylase
A
Length = 478
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSH 72
+GT + LK L H+ G+Y+++DVV +H
Sbjct: 94 YGTADDLKALSSALHERGMYLMVDVVANH 122
>pdb|1BF2|A Chain A, Structure Of Pseudomonas Isoamylase
Length = 750
Score = 31.2 bits (69), Expect = 0.59, Method: Composition-based stats.
Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 12/106 (11%)
Query: 45 GTPEQLKYLVDECHKAGLYVLLDVVHSH--------ASKNVLDGLNEFDGTQACFFHDGP 96
G + + +V H AG+ V +DVV++H +S + + G +++
Sbjct: 270 GPTAEFQAMVQAFHNAGIKVYMDVVYNHTAEGGTWTSSDPTTATIYSWRGLDNATYYELT 329
Query: 97 RGTHPLWDSR----LFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 138
G +D+ FN ++ +L ++ DGFRFD
Sbjct: 330 SGNQYFYDNTGIGANFNTYNTVAQNLIVDSLAYWANTMGVDGFRFD 375
>pdb|1QPK|A Chain A, Mutant (D193g) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 418
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 33 YLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLD 79
Y + +K G +G+ QL+ AG+ VL DVV +H ++ D
Sbjct: 78 YFWHDFNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPD 124
>pdb|1QI4|A Chain A, Mutant (e219g) Maltotetraose-forming Exo-amylase In
Complex With Maltotetraose
Length = 429
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 33 YLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLD 79
Y + +K G +G+ QL+ AG+ VL DVV +H ++ D
Sbjct: 78 YFWHDFNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPD 124
>pdb|1HVX|A Chain A, Bacillus Stearothermophilus Alpha-Amylase
Length = 515
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 60/151 (39%), Gaps = 19/151 (12%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQA--CFFHDGPRGTHP 101
+GT Q + H AG+ V DVV H K DG D + + GT+
Sbjct: 78 YGTKAQYLQAIQAAHAAGMQVYADVVFDH--KGGADGTEWVDAVEVNPSDRNQEISGTYQ 135
Query: 102 LWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVT--SMLYHNHGCGEGFSGHYD 159
+ + + + S+ +W Y FDG +D S +Y G G+ + D
Sbjct: 136 I---QAWTKFDFPGRGNTYSSFKW--RWYHFDGVDWDESRKLSRIYKFRGIGKAWDWEVD 190
Query: 160 EYFGLNVDTDALIYLMVANKFLHDKYPEIIT 190
G N D YLM A+ L +PE++T
Sbjct: 191 TENG-NYD-----YLMYAD--LDMDHPEVVT 213
>pdb|2AMG|A Chain A, Structure Of Hydrolase (Glycosidase)
Length = 418
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 33 YLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLD 79
Y + +K G +G+ QL+ AG+ VL DVV +H ++ D
Sbjct: 78 YFWHDFNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPD 124
>pdb|1QI3|A Chain A, Mutant (D193n) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 429
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 33 YLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLD 79
Y + +K G +G+ QL+ AG+ VL DVV +H ++ D
Sbjct: 78 YFWHDFNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPD 124
>pdb|1QI5|A Chain A, Mutant (D294n) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 429
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 33 YLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLD 79
Y + +K G +G+ QL+ AG+ VL DVV +H ++ D
Sbjct: 78 YFWHDFNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPD 124
>pdb|1JDA|A Chain A, Maltotetraose-Forming Exo-Amylase
pdb|1JDC|A Chain A, Mutant (E219q) Maltotetraose-Forming Exo-Amylase
Cocrystallized With Maltotetraose (Crystal Type 1)
pdb|1JDD|A Chain A, Mutant (E219q) Maltotetraose-Forming Exo-Amylase
Cocrystallized With Maltotetraose (Crystal Type 2)
Length = 429
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 33 YLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLD 79
Y + +K G +G+ QL+ AG+ VL DVV +H ++ D
Sbjct: 78 YFWHDFNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPD 124
>pdb|1GCY|A Chain A, High Resolution Crystal Structure Of Maltotetraose-Forming
Exo-Amylase
Length = 527
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 33 YLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLD 79
Y + +K G +G+ QL+ AG+ VL DVV +H ++ D
Sbjct: 78 YFWHDFNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPD 124
>pdb|1CYG|A Chain A, Cyclodextrin Glucanotransferase (E.C.2.4.1.19) (Cgtase)
Length = 680
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 43 LFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 74
FGT + LVD H G+ V++D +H S
Sbjct: 107 FFGTLSDFQRLVDAAHAKGIKVIIDFAPNHTS 138
>pdb|2WC7|A Chain A, Crystal Structure Of Nostoc Punctiforme Debranching
Enzyme( Npde)(Acarbose Soaked)
pdb|2WCS|A Chain A, Crystal Structure Of Debranching Enzyme From Nostoc
Punctiforme (Npde)
pdb|2WKG|A Chain A, Nostoc Punctiforme Debranching Enzyme (Npde)(Native Form)
Length = 488
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 22/115 (19%)
Query: 6 FGTPEQLKYL----VDECHKAGLFGTPEQLKYLVDECHKAG-LFGTPEQLKYLVDECHKA 60
+G E L Y+ ++ + +F + +Y + ++ + G E K L+D H+
Sbjct: 56 WGIMEDLDYIQNLGINAIYFTPIFQSASNHRYHTHDYYQVDPMLGGNEAFKELLDAAHQR 115
Query: 61 GLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDG-PRGTHPLWDSRLFNYSEIE 114
+ V+LD V +H+S+ FFHD G H W N+ +IE
Sbjct: 116 NIKVVLDGVFNHSSRGFF------------FFHDVLENGPHSPW----VNWFKIE 154
>pdb|3SC3|A Chain A, Crystal Structure Of A Putative Dna Replication Regulator
Hda (Sama_1916) From Shewanella Amazonensis Sb2b At 3.00
A Resolution
pdb|3SC3|B Chain B, Crystal Structure Of A Putative Dna Replication Regulator
Hda (Sama_1916) From Shewanella Amazonensis Sb2b At 3.00
A Resolution
Length = 225
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 54 VDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFN 109
+E + Y+ L + H+ S +L+GL +FD C HPLW+ +F+
Sbjct: 59 ANELERRSFYIPLGI-HASISTALLEGLEQFD--LICIDDVDAVAGHPLWEEAIFD 111
>pdb|3BOS|A Chain A, Crystal Structure Of A Putative Dna Replication Regulator
Hda (Sama_1916) From Shewanella Amazonensis Sb2b At 1.75
A Resolution
pdb|3BOS|B Chain B, Crystal Structure Of A Putative Dna Replication Regulator
Hda (Sama_1916) From Shewanella Amazonensis Sb2b At 1.75
A Resolution
Length = 242
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 54 VDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFN 109
+E + Y+ L + H+ S +L+GL +FD C HPLW+ +F+
Sbjct: 76 ANELERRSFYIPLGI-HASISTALLEGLEQFD--LICIDDVDAVAGHPLWEEAIFD 128
>pdb|1UOK|A Chain A, Crystal Structure Of B. Cereus Oligo-1,6-Glucosidase
Length = 558
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 34 LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 74
+ D C FGT E L+ E H+ + +++D+V +H S
Sbjct: 65 ISDYCKIMNEFGTMEDWDELLHEMHERNMKLMMDLVVNHTS 105
>pdb|4GIN|A Chain A, Crystal Structure Of The Mutb R284c Mutant From Crystals
Soaked With The Inhibitor Deoxynojirimycin
Length = 584
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 13/67 (19%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQAC---------FFHD 94
+GT E L+ E K G+ +++DVV +H+S D F ++A F+ D
Sbjct: 103 YGTMEDFDRLMAELKKRGMRLMVDVVINHSS----DQHEWFKSSRASKDNPYRDYYFWRD 158
Query: 95 GPRGTHP 101
G G P
Sbjct: 159 GKDGHEP 165
>pdb|4GI6|A Chain A, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI6|B Chain B, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI8|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI8|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI9|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GI9|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GIA|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
pdb|4GIA|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
Length = 557
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 13/67 (19%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQAC---------FFHD 94
+GT E L+ E K G+ +++DVV +H+S D F ++A F+ D
Sbjct: 76 YGTMEDFDRLMAELKKRGMRLMVDVVINHSS----DQHEWFKSSRASKDNPYRDYYFWRD 131
Query: 95 GPRGTHP 101
G G P
Sbjct: 132 GKDGHEP 138
>pdb|1ZJA|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJA|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJB|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|1ZJB|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|2PWD|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
pdb|2PWD|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
Length = 557
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 13/67 (19%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQAC---------FFHD 94
+GT E L+ E K G+ +++DVV +H+S D F ++A F+ D
Sbjct: 76 YGTMEDFDRLMAELKKRGMRLMVDVVINHSS----DQHEWFKSSRASKDNPYRDYYFWRD 131
Query: 95 GPRGTHP 101
G G P
Sbjct: 132 GKDGHEP 138
>pdb|2PWG|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWG|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWH|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
pdb|2PWH|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
Length = 556
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 13/67 (19%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQAC---------FFHD 94
+GT E L+ E K G+ +++DVV +H+S D F ++A F+ D
Sbjct: 75 YGTMEDFDRLMAELKKRGMRLMVDVVINHSS----DQHEWFKSSRASKDNPYRDYYFWRD 130
Query: 95 GPRGTHP 101
G G P
Sbjct: 131 GKDGHEP 137
>pdb|2PWF|A Chain A, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|B Chain B, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|C Chain C, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|D Chain D, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
Length = 556
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 13/67 (19%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQAC---------FFHD 94
+GT E L+ E K G+ +++DVV +H+S D F ++A F+ D
Sbjct: 75 YGTMEDFDRLMAELKKRGMRLMVDVVINHSS----DQHEWFKSSRASKDNPYRDYYFWRD 130
Query: 95 GPRGTHP 101
G G P
Sbjct: 131 GKDGHEP 137
>pdb|2PWE|A Chain A, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
pdb|2PWE|B Chain B, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
Length = 556
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 13/67 (19%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQAC---------FFHD 94
+GT E L+ E K G+ +++DVV +H+S D F ++A F+ D
Sbjct: 75 YGTMEDFDRLMAELKKRGMRLMVDVVINHSS----DQHEWFKSSRASKDNPYRDYYFWRD 130
Query: 95 GPRGTHP 101
G G P
Sbjct: 131 GKDGHEP 137
>pdb|4H2C|A Chain A, Trehalulose Synthase Mutb R284c Mutant
Length = 557
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 13/67 (19%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQAC---------FFHD 94
+GT E L+ E K G+ +++DVV +H+S D F ++A F+ D
Sbjct: 76 YGTMEDFDRLMAELKKRGMRLMVDVVINHSS----DQHEWFKSSRASKDNPYRDYYFWRD 131
Query: 95 GPRGTHP 101
G G P
Sbjct: 132 GKDGHEP 138
>pdb|1MWO|A Chain A, Crystal Structure Analysis Of The Hyperthermostable
Pyrocoocus Woesei Alpha-Amylase
pdb|1MXD|A Chain A, Structure Of A (Ca,Zn)-Dependent Alpha-Amylase From The
Hyperthermophilic Archaeon Pyrococcus Woesei
pdb|1MXG|A Chain A, Crystal Strucutre Of A (Ca,Zn)-Dependent Alpha-Amylase
From The Hyperthermophilic Archaeon Pyrococcus Woesei In
Complex With Acarbose
Length = 435
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDG 86
FG+ E+L L+ H G+ V+ DVV +H + L+ N F G
Sbjct: 83 FGSKEELVRLIQTAHAYGIKVIADVVINHRAGGDLE-WNPFVG 124
>pdb|4CGT|A Chain A, Deletion Mutant Delta(145-150), F151d Of Cyclodextrin
Glycosyltransferase
Length = 678
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 19/118 (16%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDG----------TQACFFH 93
FGT + L+ H G+ +++D +H S + +D T F H
Sbjct: 112 FGTMADFQNLITTAHAKGIKIVIDFAPNHTSPADAENGRLYDNGTLVGGYTNDTNGYFHH 171
Query: 94 DG-------PRGTHP-LWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSM 143
+G G + L+D FN++ + ++ ++ +L + DG R D V M
Sbjct: 172 NGGSDFSSLENGIYKNLYDLADFNHNNATIDKYFKDAIKLWL-DMGVDGIRVDAVKHM 228
>pdb|1D7F|A Chain A, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1D7F|B Chain B, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1DED|A Chain A, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
pdb|1DED|B Chain B, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
Length = 686
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 33/130 (25%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASK------------------NVLDGLNEFD 85
+GT + K L+D H + V++D +H S N+L G +
Sbjct: 112 YGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLYDNGNLLGGYT--N 169
Query: 86 GTQACFFHDGPRGT----------HPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGF 135
TQ F H G GT L+D N++ V +L ++ +L + DG
Sbjct: 170 DTQNLFHHYG--GTDFSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMWL-DLGVDGI 226
Query: 136 RFDGVTSMLY 145
R D V +M +
Sbjct: 227 RVDAVKNMPF 236
>pdb|1GJU|A Chain A, Maltosyltransferase From Thermotoga Maritima
pdb|1GJW|A Chain A, Thermotoga Maritima Maltosyltransferase Complex With
Maltose
Length = 637
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN 76
F E+ K V+ CH G+ V+LD + A+++
Sbjct: 178 FKVDEEFKAFVEACHILGIRVILDFIPRTAARD 210
>pdb|2VOU|A Chain A, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
pdb|2VOU|B Chain B, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
pdb|2VOU|C Chain C, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
Length = 397
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 39/100 (39%), Gaps = 6/100 (6%)
Query: 4 NGFGT-----PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH 58
+GFGT PE + YL+++ + P VD + P ++ +
Sbjct: 42 SGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTGERVGSVPADWRFTSYDSI 101
Query: 59 KAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRG 98
GLY L H SK L GL++ T F DG +
Sbjct: 102 YGGLYELFGPERYHTSK-CLVGLSQDSETVQMRFSDGTKA 140
>pdb|1MNC|A Chain A, Structure Of Human Neutrophil Collagenase Reveals Large
S1' Specificity Pocket
Length = 163
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 122 NLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSG--HYD-EYFGLNVDTDALIYLMVAN 178
N+ +Y ++ DG FDG +L H G+G G H+D E N + ++L+ A+
Sbjct: 59 NIAFYQRDHG-DGSPFDGPNGILAHAFQPGQGIGGDAHFDAEETWTNTSANYNLFLVAAH 117
Query: 179 KFLH 182
+F H
Sbjct: 118 EFGH 121
>pdb|1QIB|A Chain A, Crystal Structure Of Gelatinase A Catalytic Domain
Length = 161
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 19/93 (20%)
Query: 105 SRLFN-YSEIEVLRF----------LLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEG 153
+R F +S++ LRF +++ RW DG+ FDG +L H G G
Sbjct: 31 ARAFQVWSDVTPLRFSRIHDGEADIMINFGRWE----HGDGYPFDGKDGLLAHAFAPGTG 86
Query: 154 FSG--HY--DEYFGLNVDTDALIYLMVANKFLH 182
G H+ DE + L ++L+ A++F H
Sbjct: 87 VGGDSHFDDDELWSLGKGVGYSLFLVAAHEFGH 119
>pdb|1UKS|A Chain A, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
pdb|1UKS|B Chain B, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
Length = 686
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 50/130 (38%), Gaps = 33/130 (25%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASK------------------NVLDGLNEFD 85
+GT + K L+D H + V++D +H S N+L G +
Sbjct: 112 YGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLYDNGNLLGGYT--N 169
Query: 86 GTQACFFHDGPRGT----------HPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGF 135
TQ F H G GT L+D N++ V +L ++ +L + DG
Sbjct: 170 DTQNLFHHYG--GTDLSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMWL-DLGVDGI 226
Query: 136 RFDGVTSMLY 145
R D V M +
Sbjct: 227 RVDAVKHMPF 236
>pdb|2RGO|A Chain A, Structure Of Alpha-Glycerophosphate Oxidase From
Streptococcus Sp.: A Template For The Mitochondrial
Alpha- Glycerophosphate Dehydrogenase
pdb|2RGO|B Chain B, Structure Of Alpha-Glycerophosphate Oxidase From
Streptococcus Sp.: A Template For The Mitochondrial
Alpha- Glycerophosphate Dehydrogenase
Length = 607
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 180 FLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGRPG--LDKSF 225
++ +YPE D+ A RP+ G +G DY G G DKSF
Sbjct: 323 VINHRYPEANITLADIEASWAGLRPLLIGNSGSDYNGGDNGSISDKSF 370
>pdb|1HOV|A Chain A, Solution Structure Of A Catalytic Domain Of Mmp-2
Complexed With Sc-74020
Length = 163
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 133 DGFRFDGVTSMLYHNHGCGEGFSG--HY-DEYFGLNVDTDALIYLMVANKFLH 182
DG+ FDG +L H G G G H+ D+ N + ++L+ A++F H
Sbjct: 72 DGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTNTSANYSLFLVAAHEFGH 124
>pdb|1V3J|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3J|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3L|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
pdb|1V3L|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
Length = 686
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 50/130 (38%), Gaps = 33/130 (25%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASK------------------NVLDGLNEFD 85
+GT + K L+D H + V++D +H S N+L G +
Sbjct: 112 YGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLYDNGNLLGGYT--N 169
Query: 86 GTQACFFHDGPRGT----------HPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGF 135
TQ F H G GT L+D N++ V +L ++ +L + DG
Sbjct: 170 DTQNLFHHYG--GTDFSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMWL-DLGVDGI 226
Query: 136 RFDGVTSMLY 145
R D V M +
Sbjct: 227 RVDAVKHMPF 236
>pdb|1UKT|A Chain A, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
pdb|1UKT|B Chain B, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
Length = 686
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 50/130 (38%), Gaps = 33/130 (25%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASK------------------NVLDGLNEFD 85
+GT + K L+D H + V++D +H S N+L G +
Sbjct: 112 YGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLYDNGNLLGGYT--N 169
Query: 86 GTQACFFHDGPRGT----------HPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGF 135
TQ F H G GT L+D N++ V +L ++ +L + DG
Sbjct: 170 DTQNLFHHYG--GTDFSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMWL-DLGVDGI 226
Query: 136 RFDGVTSMLY 145
R D V M +
Sbjct: 227 RVDAVKHMPF 236
>pdb|3MTW|A Chain A, Crystal Structure Of L-Lysine, L-Arginine Carboxypeptidase
Cc2672 From Caulobacter Crescentus Cb15 Complexed With
N-Methyl Phosphonate Derivative Of L-Arginine
Length = 403
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 46 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL 81
T E++K +VDE H AG+ V H+H + + + +
Sbjct: 205 TYEEMKAVVDEAHMAGIKV---AAHAHGASGIREAV 237
>pdb|1PAM|A Chain A, Cyclodextrin Glucanotransferase
pdb|1PAM|B Chain B, Cyclodextrin Glucanotransferase
pdb|1I75|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1I75|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1UKQ|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
pdb|1UKQ|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
Length = 686
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 50/130 (38%), Gaps = 33/130 (25%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASK------------------NVLDGLNEFD 85
+GT + K L+D H + V++D +H S N+L G +
Sbjct: 112 YGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLYDNGNLLGGYT--N 169
Query: 86 GTQACFFHDGPRGT----------HPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGF 135
TQ F H G GT L+D N++ V +L ++ +L + DG
Sbjct: 170 DTQNLFHHYG--GTDFSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMWL-DLGVDGI 226
Query: 136 RFDGVTSMLY 145
R D V M +
Sbjct: 227 RVDAVKHMPF 236
>pdb|1V3K|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3K|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3M|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
pdb|1V3M|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
Length = 686
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 50/130 (38%), Gaps = 33/130 (25%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASK------------------NVLDGLNEFD 85
+GT + K L+D H + V++D +H S N+L G +
Sbjct: 112 YGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLYDNGNLLGGYT--N 169
Query: 86 GTQACFFHDGPRGT----------HPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGF 135
TQ F H G GT L+D N++ V +L ++ +L + DG
Sbjct: 170 DTQNLFHHYG--GTDFSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMWL-DLGVDGI 226
Query: 136 RFDGVTSMLY 145
R D V M +
Sbjct: 227 RVDAVKHMPF 236
>pdb|2E3D|A Chain A, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|B Chain B, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|C Chain C, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|D Chain D, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
Length = 302
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 4/38 (10%)
Query: 50 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGT 87
++Y+V+EC AG+ ++ V HS SKN ++ N FD +
Sbjct: 42 IQYVVNECIAAGITEIVLVTHS--SKNSIE--NHFDTS 75
>pdb|2Y3T|A Chain A, Mutant (K220e) Of The Hsdr Subunit Of The Ecor124i
Restriction Enzyme In Complex With Atp
pdb|2Y3T|B Chain B, Mutant (K220e) Of The Hsdr Subunit Of The Ecor124i
Restriction Enzyme In Complex With Atp
pdb|2Y3T|C Chain C, Mutant (K220e) Of The Hsdr Subunit Of The Ecor124i
Restriction Enzyme In Complex With Atp
pdb|2Y3T|D Chain D, Mutant (K220e) Of The Hsdr Subunit Of The Ecor124i
Restriction Enzyme In Complex With Atp
Length = 1033
Score = 27.3 bits (59), Expect = 7.4, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 10 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP 47
+Q+ ++ DECH++ + LK ++ G GTP
Sbjct: 401 QQVVFIFDECHRSQFGEAQKNLKKKFKRYYQFGFTGTP 438
>pdb|2W74|B Chain B, Mutant (K220r) Of The Hsdr Subunit Of The Ecor124i
Restriction Enzyme In Complex With Atp
pdb|2W74|D Chain D, Mutant (K220r) Of The Hsdr Subunit Of The Ecor124i
Restriction Enzyme In Complex With Atp
Length = 875
Score = 27.3 bits (59), Expect = 7.7, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 10 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP 47
+Q+ ++ DECH++ + LK ++ G GTP
Sbjct: 390 QQVVFIFDECHRSQFGEAQKNLKKKFKRYYQFGFTGTP 427
>pdb|2W00|A Chain A, Crystal Structure Of The Hsdr Subunit Of The Ecor124i
Restriction Enzyme In Complex With Atp
pdb|2W00|B Chain B, Crystal Structure Of The Hsdr Subunit Of The Ecor124i
Restriction Enzyme In Complex With Atp
Length = 1038
Score = 27.3 bits (59), Expect = 7.9, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 10 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP 47
+Q+ ++ DECH++ + LK ++ G GTP
Sbjct: 401 QQVVFIFDECHRSQFGEAQKNLKKKFKRYYQFGFTGTP 438
>pdb|1BPL|B Chain B, Glycosyltransferase
Length = 294
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 125 WYLEEYQFDGFRFDGVTSMLY 145
WY E Q DGFR D V + +
Sbjct: 29 WYANELQLDGFRLDAVKHIKF 49
>pdb|1VJS|A Chain A, Structure Of Alpha-Amylase Precursor
Length = 483
Score = 26.9 bits (58), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 125 WYLEEYQFDGFRFDGVTSMLY 145
WY E Q DGFR D V + +
Sbjct: 218 WYANELQLDGFRLDAVKHIKF 238
>pdb|1LWH|A Chain A, Crystal Structure Of T. Maritima
4-Alpha-Glucanotransferase
pdb|1LWH|B Chain B, Crystal Structure Of T. Maritima
4-Alpha-Glucanotransferase
pdb|1LWJ|A Chain A, Crystal Structure Of T. Maritima 4-Alpha-
GlucanotransferaseACARBOSE COMPLEX
pdb|1LWJ|B Chain B, Crystal Structure Of T. Maritima 4-Alpha-
GlucanotransferaseACARBOSE COMPLEX
Length = 441
Score = 26.9 bits (58), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 48/127 (37%), Gaps = 28/127 (22%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS------KNVLDG----------LNEFDGT 87
+G+ + K +++ H +G+ V+LD+ H + L G N+
Sbjct: 66 YGSEREFKEMIEAFHDSGIKVVLDLPIHHTGFLHTWFQKALKGDPHYRDYYVWANKETDL 125
Query: 88 QACFFHDGPRGTHPLWDSRLF-----------NYSEIEVLRFLLSNLRWYLEEYQFDGFR 136
DG + HPL D R + NY +V + L +L + DGFR
Sbjct: 126 DERREWDGEKIWHPLEDGRFYRGLFGPFSPDLNYDNPQVFD-EMKRLVLHLLDMGVDGFR 184
Query: 137 FDGVTSM 143
FD M
Sbjct: 185 FDAAKHM 191
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.143 0.456
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,803,333
Number of Sequences: 62578
Number of extensions: 416808
Number of successful extensions: 1210
Number of sequences better than 100.0: 122
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 1021
Number of HSP's gapped (non-prelim): 183
length of query: 237
length of database: 14,973,337
effective HSP length: 96
effective length of query: 141
effective length of database: 8,965,849
effective search space: 1264184709
effective search space used: 1264184709
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)