Query psy9004
Match_columns 237
No_of_seqs 173 out of 1491
Neff 8.2
Searched_HMMs 46136
Date Sat Aug 17 01:20:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9004.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9004hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02447 1,4-alpha-glucan-bran 100.0 2.1E-47 4.6E-52 360.9 19.6 225 3-227 247-479 (758)
2 PLN02960 alpha-amylase 100.0 1.2E-44 2.5E-49 343.0 19.6 222 3-225 413-642 (897)
3 PRK14705 glycogen branching en 100.0 1.2E-43 2.7E-48 348.7 20.6 216 3-222 762-986 (1224)
4 PRK12313 glycogen branching en 100.0 1.2E-42 2.7E-47 329.5 20.4 215 3-222 167-390 (633)
5 PRK12568 glycogen branching en 100.0 9.4E-43 2E-47 328.8 19.1 218 3-224 266-492 (730)
6 PRK14706 glycogen branching en 100.0 1.2E-42 2.5E-47 327.6 19.4 215 3-223 164-386 (639)
7 TIGR01515 branching_enzym alph 100.0 1.9E-42 4.1E-47 326.7 19.9 214 3-221 153-376 (613)
8 PRK05402 glycogen branching en 100.0 3.4E-42 7.4E-47 330.4 20.9 218 2-222 261-486 (726)
9 PRK10785 maltodextrin glucosid 100.0 1.2E-40 2.7E-45 313.6 15.6 182 1-200 174-379 (598)
10 PLN03244 alpha-amylase; Provis 100.0 1.3E-39 2.8E-44 304.2 17.4 193 34-227 426-619 (872)
11 COG0296 GlgB 1,4-alpha-glucan 100.0 4.2E-39 9.1E-44 298.3 16.3 214 3-219 162-382 (628)
12 TIGR02402 trehalose_TreZ malto 100.0 1.3E-38 2.7E-43 296.6 17.9 188 2-220 107-307 (542)
13 PF00128 Alpha-amylase: Alpha 100.0 1.8E-39 3.9E-44 281.0 9.6 171 3-200 1-204 (316)
14 TIGR02456 treS_nterm trehalose 100.0 2.3E-38 4.9E-43 295.6 15.8 203 2-219 24-266 (539)
15 PRK09441 cytoplasmic alpha-amy 100.0 4.8E-37 1E-41 283.2 15.4 188 5-218 21-292 (479)
16 TIGR02403 trehalose_treC alpha 100.0 7.5E-37 1.6E-41 285.3 16.1 211 2-217 23-269 (543)
17 PRK10933 trehalose-6-phosphate 100.0 1.2E-35 2.6E-40 277.1 18.7 197 2-203 29-261 (551)
18 PRK09505 malS alpha-amylase; R 100.0 7.5E-36 1.6E-40 282.2 16.9 190 2-220 226-528 (683)
19 KOG0470|consensus 100.0 3E-36 6.6E-41 277.9 11.6 224 3-226 251-496 (757)
20 TIGR02100 glgX_debranch glycog 100.0 1.1E-35 2.3E-40 282.7 14.1 204 1-236 177-407 (688)
21 TIGR02104 pulA_typeI pullulana 100.0 7.2E-35 1.6E-39 275.1 17.4 167 5-200 163-355 (605)
22 PRK03705 glycogen debranching 100.0 2.2E-35 4.7E-40 278.9 12.8 203 1-236 172-401 (658)
23 PLN00196 alpha-amylase; Provis 100.0 2.2E-34 4.9E-39 260.5 17.0 166 2-197 40-232 (428)
24 TIGR02102 pullulan_Gpos pullul 100.0 9.7E-34 2.1E-38 277.5 16.7 165 2-197 476-675 (1111)
25 PLN02361 alpha-amylase 100.0 5.9E-33 1.3E-37 248.8 17.3 163 5-197 28-208 (401)
26 TIGR02103 pullul_strch alpha-1 100.0 1.9E-32 4.1E-37 264.0 16.2 142 30-197 378-529 (898)
27 PRK14510 putative bifunctional 100.0 1.4E-32 3E-37 274.2 15.5 198 2-236 177-409 (1221)
28 PRK13840 sucrose phosphorylase 100.0 5.5E-32 1.2E-36 246.8 15.0 176 2-200 16-240 (495)
29 COG1523 PulA Type II secretory 100.0 1.7E-31 3.7E-36 251.2 11.7 204 1-236 193-427 (697)
30 PLN02784 alpha-amylase 100.0 3.5E-30 7.6E-35 243.9 17.2 163 5-198 520-703 (894)
31 TIGR03852 sucrose_gtfA sucrose 100.0 9.8E-31 2.1E-35 237.3 10.6 172 3-197 14-234 (470)
32 PLN02877 alpha-amylase/limit d 100.0 9E-30 1.9E-34 245.4 17.7 171 1-197 361-600 (970)
33 COG0366 AmyA Glycosidases [Car 100.0 3.1E-30 6.7E-35 238.2 10.6 141 3-144 26-204 (505)
34 KOG0471|consensus 99.9 1.4E-26 3.1E-31 215.6 11.3 144 3-147 37-222 (545)
35 TIGR02455 TreS_stutzeri trehal 99.9 2.3E-25 5.1E-30 205.5 15.1 190 9-217 77-359 (688)
36 TIGR02401 trehalose_TreY malto 99.9 8E-25 1.7E-29 208.8 17.7 186 2-214 12-305 (825)
37 smart00642 Aamy Alpha-amylase 99.9 1.5E-22 3.4E-27 161.8 6.9 74 2-75 15-97 (166)
38 PRK14511 maltooligosyl trehalo 99.8 1.3E-19 2.8E-24 174.1 14.9 76 2-77 16-98 (879)
39 PRK14507 putative bifunctional 99.8 5E-19 1.1E-23 179.0 15.9 74 2-75 754-834 (1693)
40 COG3280 TreY Maltooligosyl tre 99.7 1.2E-16 2.6E-21 148.5 11.5 72 5-76 18-96 (889)
41 TIGR01531 glyc_debranch glycog 99.6 7.2E-15 1.6E-19 145.7 12.9 74 3-76 129-213 (1464)
42 KOG2212|consensus 99.6 1.9E-14 4.1E-19 124.0 9.7 112 31-143 78-220 (504)
43 PF02638 DUF187: Glycosyl hydr 99.3 1.3E-10 2.7E-15 101.9 13.9 184 6-195 19-230 (311)
44 PF14872 GHL5: Hypothetical gl 99.2 2.6E-10 5.6E-15 105.4 11.7 145 29-200 283-439 (811)
45 COG1649 Uncharacterized protei 99.1 1.2E-09 2.6E-14 98.0 10.5 180 5-194 63-272 (418)
46 PF14871 GHL6: Hypothetical gl 98.9 6.5E-09 1.4E-13 79.9 8.8 117 10-138 4-131 (132)
47 PF02065 Melibiase: Melibiase; 98.8 2.3E-07 4.9E-12 83.8 15.8 168 7-196 59-236 (394)
48 PF14701 hDGE_amylase: glucano 98.8 9.8E-08 2.1E-12 86.0 12.9 74 3-76 19-105 (423)
49 cd06593 GH31_xylosidase_YicI Y 98.4 5.6E-06 1.2E-10 72.5 13.2 132 4-143 22-161 (308)
50 cd06592 GH31_glucosidase_KIAA1 98.4 1.5E-06 3.3E-11 76.0 9.4 132 4-142 28-166 (303)
51 PF13200 DUF4015: Putative gly 98.1 0.00011 2.5E-09 64.3 13.9 203 7-227 14-233 (316)
52 cd06597 GH31_transferase_CtsY 98.0 4.5E-05 9.7E-10 67.9 10.3 95 49-143 86-189 (340)
53 KOG3625|consensus 98.0 5.1E-05 1.1E-09 73.4 11.0 68 9-76 145-225 (1521)
54 PF02324 Glyco_hydro_70: Glyco 98.0 1.6E-05 3.6E-10 74.7 6.4 69 8-76 589-675 (809)
55 cd06602 GH31_MGAM_SI_GAA This 97.8 0.00012 2.6E-09 65.1 9.5 135 5-142 23-166 (339)
56 cd06600 GH31_MGAM-like This fa 97.8 7.4E-05 1.6E-09 65.8 7.7 131 4-141 22-160 (317)
57 cd06594 GH31_glucosidase_YihQ 97.8 8.5E-05 1.8E-09 65.5 7.6 134 4-143 21-168 (317)
58 cd06591 GH31_xylosidase_XylS X 97.7 0.00019 4.1E-09 63.3 9.0 132 4-142 22-160 (319)
59 cd06599 GH31_glycosidase_Aec37 97.6 0.00031 6.7E-09 61.9 9.2 131 5-142 28-169 (317)
60 cd06604 GH31_glucosidase_II_Ma 97.6 0.0002 4.4E-09 63.6 7.8 130 4-142 22-160 (339)
61 PRK10658 putative alpha-glucos 97.6 0.00018 3.9E-09 69.3 7.8 129 7-143 284-420 (665)
62 PF13199 Glyco_hydro_66: Glyco 97.6 0.00035 7.6E-09 65.7 9.4 127 8-142 120-269 (559)
63 cd06598 GH31_transferase_CtsZ 97.6 0.00023 5E-09 62.7 7.6 130 4-141 22-164 (317)
64 PRK10426 alpha-glucosidase; Pr 97.6 0.00098 2.1E-08 64.0 12.0 128 8-143 223-365 (635)
65 PF01055 Glyco_hydro_31: Glyco 97.5 6.6E-05 1.4E-09 68.9 3.5 132 7-143 44-182 (441)
66 cd06601 GH31_lyase_GLase GLase 97.3 0.0025 5.5E-08 56.5 10.5 109 6-141 24-133 (332)
67 PRK14582 pgaB outer membrane N 97.3 0.0024 5.2E-08 61.4 10.7 125 7-143 335-470 (671)
68 cd06595 GH31_xylosidase_XylS-l 97.2 0.0021 4.6E-08 56.0 8.8 127 4-141 23-159 (292)
69 cd06603 GH31_GANC_GANAB_alpha 97.2 0.00076 1.6E-08 60.0 6.1 130 4-141 22-162 (339)
70 TIGR01370 cysRS possible cyste 97.1 0.0054 1.2E-07 53.9 10.3 127 51-192 84-211 (315)
71 cd02875 GH18_chitobiase Chitob 96.9 0.0064 1.4E-07 54.5 9.5 97 39-189 57-153 (358)
72 PRK14508 4-alpha-glucanotransf 96.9 0.015 3.2E-07 54.4 11.8 140 48-205 198-356 (497)
73 PF00150 Cellulase: Cellulase 96.9 0.04 8.6E-07 46.8 13.6 138 8-194 23-172 (281)
74 PLN02635 disproportionating en 96.8 0.0081 1.7E-07 56.5 9.5 137 48-202 224-379 (538)
75 KOG1065|consensus 96.8 0.0059 1.3E-07 59.2 8.6 132 4-141 309-448 (805)
76 COG1501 Alpha-glucosidases, fa 96.7 0.0031 6.7E-08 61.8 6.0 95 42-144 318-418 (772)
77 cd06542 GH18_EndoS-like Endo-b 96.5 0.015 3.2E-07 49.4 8.4 64 47-140 50-113 (255)
78 PLN02763 hydrolase, hydrolyzin 96.5 0.016 3.4E-07 58.0 9.4 130 5-142 200-337 (978)
79 cd06589 GH31 The enzymes of gl 96.4 0.014 3E-07 50.0 7.8 94 4-143 22-118 (265)
80 PF07745 Glyco_hydro_53: Glyco 96.2 0.063 1.4E-06 47.6 10.7 146 9-194 27-176 (332)
81 PRK11052 malQ 4-alpha-glucanot 96.1 0.054 1.2E-06 52.7 10.8 141 48-204 355-509 (695)
82 TIGR00217 malQ 4-alpha-glucano 96.1 0.073 1.6E-06 50.0 11.1 139 48-204 212-370 (513)
83 PF02446 Glyco_hydro_77: 4-alp 95.8 0.01 2.2E-07 55.6 4.2 143 48-205 192-345 (496)
84 cd06545 GH18_3CO4_chitinase Th 95.8 0.11 2.3E-06 44.2 10.0 87 47-184 45-131 (253)
85 cd06562 GH20_HexA_HexB-like Be 95.6 0.12 2.7E-06 46.1 10.2 81 46-131 68-149 (348)
86 PRK14510 putative bifunctional 95.5 0.08 1.7E-06 54.7 9.7 141 48-204 932-1086(1221)
87 PF02324 Glyco_hydro_70: Glyco 95.3 0.056 1.2E-06 51.6 7.1 83 106-214 144-245 (809)
88 cd02742 GH20_hexosaminidase Be 95.2 0.073 1.6E-06 46.6 7.1 77 46-130 70-147 (303)
89 COG3867 Arabinogalactan endo-1 95.0 0.3 6.5E-06 42.5 10.1 142 10-192 67-220 (403)
90 PRK14507 putative bifunctional 94.9 0.21 4.6E-06 52.8 10.4 141 48-204 386-540 (1693)
91 cd02871 GH18_chitinase_D-like 94.7 0.19 4.2E-06 44.1 8.5 62 46-140 58-119 (312)
92 cd06564 GH20_DspB_LnbB-like Gl 94.7 0.18 3.8E-06 44.6 8.3 75 46-131 80-155 (326)
93 PF14488 DUF4434: Domain of un 94.4 0.089 1.9E-06 42.0 5.2 63 9-71 23-88 (166)
94 cd06568 GH20_SpHex_like A subg 94.3 0.37 8E-06 42.7 9.4 77 46-130 73-153 (329)
95 PF05913 DUF871: Bacterial pro 94.3 0.07 1.5E-06 47.8 4.8 27 47-73 46-72 (357)
96 smart00812 Alpha_L_fucos Alpha 94.0 1.3 2.8E-05 40.2 12.3 139 10-194 85-234 (384)
97 cd06547 GH85_ENGase Endo-beta- 93.9 0.15 3.3E-06 45.4 6.1 97 51-191 49-145 (339)
98 COG2342 Predicted extracellula 93.9 0.59 1.3E-05 40.2 9.3 130 46-193 62-192 (300)
99 cd06570 GH20_chitobiase-like_1 93.9 0.21 4.6E-06 43.9 7.0 78 46-130 66-146 (311)
100 cd02874 GH18_CFLE_spore_hydrol 93.9 0.4 8.8E-06 41.9 8.8 90 50-184 47-136 (313)
101 cd06563 GH20_chitobiase-like T 93.9 0.31 6.8E-06 43.7 8.1 80 46-131 84-165 (357)
102 COG3589 Uncharacterized conser 93.8 0.088 1.9E-06 46.3 4.3 25 47-71 48-72 (360)
103 PF01120 Alpha_L_fucos: Alpha- 93.6 1.3 2.7E-05 39.6 11.5 108 46-193 136-244 (346)
104 cd06569 GH20_Sm-chitobiase-lik 93.4 0.62 1.3E-05 43.1 9.5 83 46-129 95-192 (445)
105 cd06565 GH20_GcnA-like Glycosy 93.2 1.4 3.1E-05 38.4 11.0 164 8-195 19-188 (301)
106 PLN02950 4-alpha-glucanotransf 93.0 0.37 8E-06 48.4 7.8 90 48-143 461-559 (909)
107 PRK10605 N-ethylmaleimide redu 92.9 4.8 0.0001 36.2 14.1 132 47-187 78-225 (362)
108 COG1640 MalQ 4-alpha-glucanotr 92.5 0.91 2E-05 42.6 9.2 145 48-205 210-363 (520)
109 PF00724 Oxidored_FMN: NADH:fl 92.5 0.82 1.8E-05 40.7 8.7 131 47-187 79-215 (341)
110 PF14883 GHL13: Hypothetical g 92.4 5.9 0.00013 34.4 13.2 164 8-190 19-189 (294)
111 PLN03236 4-alpha-glucanotransf 91.9 0.82 1.8E-05 44.8 8.4 90 48-143 274-372 (745)
112 cd04747 OYE_like_5_FMN Old yel 91.5 6.1 0.00013 35.5 13.1 131 47-188 77-212 (361)
113 PF02449 Glyco_hydro_42: Beta- 91.4 0.55 1.2E-05 42.2 6.3 119 8-141 12-138 (374)
114 COG1902 NemA NADH:flavin oxido 91.2 4.4 9.5E-05 36.5 11.8 130 47-188 82-216 (363)
115 PF00728 Glyco_hydro_20: Glyco 91.1 0.14 3.1E-06 45.3 2.3 80 46-131 71-156 (351)
116 PF01301 Glyco_hydro_35: Glyco 91.0 1.4 3.1E-05 38.9 8.4 96 9-128 27-128 (319)
117 cd04733 OYE_like_2_FMN Old yel 90.7 5.8 0.00013 35.1 12.1 130 47-191 81-220 (338)
118 cd02929 TMADH_HD_FMN Trimethyl 90.3 7.7 0.00017 34.9 12.7 129 47-188 82-218 (370)
119 cd02931 ER_like_FMN Enoate red 90.3 10 0.00022 34.3 13.5 127 47-186 82-216 (382)
120 PRK15452 putative protease; Pr 90.2 4.8 0.0001 37.2 11.4 89 7-142 11-100 (443)
121 cd02803 OYE_like_FMN_family Ol 90.0 2.7 5.8E-05 36.9 9.4 132 47-191 76-212 (327)
122 cd04734 OYE_like_3_FMN Old yel 89.8 9.6 0.00021 33.9 12.8 128 47-186 76-206 (343)
123 TIGR03356 BGL beta-galactosida 89.3 2.1 4.5E-05 39.4 8.3 88 8-131 56-150 (427)
124 PLN02411 12-oxophytodienoate r 89.3 9.3 0.0002 34.7 12.4 132 47-186 86-230 (391)
125 PF10566 Glyco_hydro_97: Glyco 89.2 4.4 9.6E-05 35.0 9.7 96 5-141 31-129 (273)
126 PRK13523 NADPH dehydrogenase N 89.1 13 0.00028 33.1 13.0 123 47-185 80-206 (337)
127 cd00598 GH18_chitinase-like Th 88.9 2.9 6.3E-05 33.8 8.2 65 46-140 47-113 (210)
128 COG3345 GalA Alpha-galactosida 88.6 0.78 1.7E-05 43.1 4.9 131 7-145 310-448 (687)
129 cd04735 OYE_like_4_FMN Old yel 88.5 15 0.00033 32.8 13.1 128 47-186 77-209 (353)
130 cd02932 OYE_YqiM_FMN Old yello 88.0 18 0.0004 31.9 14.5 138 47-191 76-225 (336)
131 cd06546 GH18_CTS3_chitinase GH 88.0 2.9 6.3E-05 35.6 7.9 69 42-140 53-121 (256)
132 cd02877 GH18_hevamine_XipI_cla 87.5 10 0.00022 32.9 10.9 22 46-67 57-78 (280)
133 KOG2499|consensus 87.3 4.3 9.3E-05 37.7 8.7 76 46-129 248-324 (542)
134 cd02933 OYE_like_FMN Old yello 87.3 20 0.00043 31.9 13.0 28 47-76 76-103 (338)
135 PF03644 Glyco_hydro_85: Glyco 86.8 2.7 5.9E-05 37.0 7.1 96 51-191 45-140 (311)
136 PLN02460 indole-3-glycerol-pho 83.4 2 4.4E-05 38.2 4.7 60 4-68 164-237 (338)
137 cd06543 GH18_PF-ChiA-like PF-C 82.8 17 0.00038 31.7 10.3 61 47-140 53-113 (294)
138 cd02876 GH18_SI-CLP Stabilin-1 82.6 3.1 6.7E-05 36.5 5.6 60 111-185 88-147 (318)
139 PRK09852 cryptic 6-phospho-bet 82.2 5.5 0.00012 37.2 7.4 88 9-131 74-169 (474)
140 smart00636 Glyco_18 Glycosyl h 81.6 6.9 0.00015 34.3 7.5 56 111-184 87-142 (334)
141 PLN03231 putative alpha-galact 81.2 41 0.00089 30.3 12.2 93 47-140 85-185 (357)
142 PRK08255 salicylyl-CoA 5-hydro 80.8 54 0.0012 32.5 14.1 133 47-186 474-616 (765)
143 cd02930 DCR_FMN 2,4-dienoyl-Co 80.8 41 0.00089 30.0 13.7 128 47-190 76-207 (353)
144 cd06549 GH18_trifunctional GH1 79.9 5.2 0.00011 34.8 6.1 54 111-184 84-137 (298)
145 cd02872 GH18_chitolectin_chito 78.1 11 0.00023 33.6 7.6 65 111-191 92-157 (362)
146 PLN03059 beta-galactosidase; P 77.5 13 0.00028 37.1 8.4 100 9-129 62-164 (840)
147 cd02879 GH18_plant_chitinase_c 77.4 10 0.00022 33.0 7.2 53 111-183 88-141 (299)
148 PF01212 Beta_elim_lyase: Beta 77.1 2.6 5.7E-05 36.6 3.4 24 46-69 143-166 (290)
149 COG1242 Predicted Fe-S oxidore 76.2 16 0.00034 31.7 7.6 95 46-189 166-261 (312)
150 KOG4175|consensus 76.0 3.5 7.6E-05 34.0 3.5 74 2-75 76-162 (268)
151 PRK15014 6-phospho-beta-glucos 75.6 11 0.00024 35.2 7.2 88 9-131 72-167 (477)
152 COG1306 Uncharacterized conser 74.0 31 0.00068 30.3 8.9 127 8-141 79-219 (400)
153 PF00704 Glyco_hydro_18: Glyco 72.8 15 0.00032 32.0 7.1 57 112-184 96-152 (343)
154 smart00633 Glyco_10 Glycosyl h 71.0 59 0.0013 27.4 10.1 109 47-193 15-124 (254)
155 COG2730 BglC Endoglucanase [Ca 70.0 9 0.0002 34.9 5.2 53 9-68 76-136 (407)
156 COG0520 csdA Selenocysteine ly 69.2 4.7 0.0001 36.8 3.1 39 38-76 168-209 (405)
157 PF07555 NAGidase: beta-N-acet 69.1 24 0.00052 31.1 7.4 90 11-137 20-110 (306)
158 PF14587 Glyco_hydr_30_2: O-Gl 69.1 76 0.0016 28.9 10.6 118 50-195 106-228 (384)
159 cd08560 GDPD_EcGlpQ_like_1 Gly 68.1 30 0.00065 31.1 8.0 66 50-141 280-348 (356)
160 TIGR01233 lacG 6-phospho-beta- 67.8 27 0.00059 32.5 7.9 87 9-131 56-149 (467)
161 COG0041 PurE Phosphoribosylcar 66.8 8.2 0.00018 30.4 3.5 29 40-68 35-64 (162)
162 PRK13511 6-phospho-beta-galact 66.3 27 0.00059 32.5 7.6 52 9-69 57-115 (469)
163 PRK09593 arb 6-phospho-beta-gl 66.2 32 0.00069 32.2 8.0 88 9-131 76-171 (478)
164 KOG0496|consensus 66.2 30 0.00066 33.4 7.8 97 10-128 53-153 (649)
165 PRK13397 3-deoxy-7-phosphohept 66.1 20 0.00043 30.6 6.1 55 9-68 32-86 (250)
166 PF03198 Glyco_hydro_72: Gluca 65.8 9.3 0.0002 33.6 4.1 50 10-76 57-107 (314)
167 PRK05628 coproporphyrinogen II 65.6 11 0.00023 33.9 4.7 35 42-76 138-173 (375)
168 PF01791 DeoC: DeoC/LacD famil 65.0 5.8 0.00013 33.2 2.7 25 47-71 111-135 (236)
169 cd07938 DRE_TIM_HMGL 3-hydroxy 64.9 73 0.0016 27.4 9.5 58 48-140 114-171 (274)
170 PF01373 Glyco_hydro_14: Glyco 64.4 11 0.00024 34.4 4.4 62 3-76 13-81 (402)
171 PLN02849 beta-glucosidase 63.6 27 0.00058 33.0 7.0 51 9-68 82-139 (503)
172 PRK05692 hydroxymethylglutaryl 63.6 74 0.0016 27.6 9.3 59 48-141 120-179 (287)
173 cd06548 GH18_chitinase The GH1 63.5 11 0.00023 33.1 4.2 29 111-139 105-133 (322)
174 TIGR00433 bioB biotin syntheta 63.3 14 0.0003 31.7 4.8 58 10-72 124-182 (296)
175 KOG0259|consensus 63.1 7.5 0.00016 35.2 3.1 31 46-76 217-247 (447)
176 PRK06256 biotin synthase; Vali 62.4 11 0.00023 33.3 4.0 58 10-72 153-211 (336)
177 PRK07094 biotin synthase; Prov 61.8 13 0.00028 32.5 4.5 63 10-76 130-193 (323)
178 TIGR00539 hemN_rel putative ox 61.2 15 0.00032 32.8 4.7 64 10-76 101-165 (360)
179 PRK05904 coproporphyrinogen II 60.9 14 0.00031 33.0 4.6 64 10-76 104-168 (353)
180 PLN02814 beta-glucosidase 60.8 31 0.00068 32.5 7.0 51 9-68 80-137 (504)
181 cd08577 PI-PLCc_GDPD_SF_unchar 60.2 12 0.00027 31.3 3.8 25 47-71 184-208 (228)
182 PRK09589 celA 6-phospho-beta-g 59.1 41 0.00089 31.5 7.4 89 8-131 69-165 (476)
183 PLN02998 beta-glucosidase 58.9 30 0.00065 32.6 6.5 51 9-68 85-142 (497)
184 TIGR03849 arch_ComA phosphosul 58.8 23 0.0005 30.0 5.1 24 46-69 98-121 (237)
185 cd00615 Orn_deC_like Ornithine 58.8 7.4 0.00016 33.5 2.3 26 44-69 166-191 (294)
186 PRK05967 cystathionine beta-ly 58.7 14 0.00031 33.6 4.2 31 42-72 160-190 (395)
187 PLN02899 alpha-galactosidase 58.2 1.3E+02 0.0028 29.2 10.4 93 47-140 112-217 (633)
188 PRK08207 coproporphyrinogen II 58.1 20 0.00043 33.7 5.1 65 9-76 269-334 (488)
189 cd00958 DhnA Class I fructose- 57.9 17 0.00036 30.2 4.3 23 48-70 109-131 (235)
190 PRK12569 hypothetical protein; 57.9 1E+02 0.0022 26.3 8.8 106 42-193 41-148 (245)
191 COG2355 Zn-dependent dipeptida 57.7 16 0.00034 32.3 4.1 60 8-76 110-173 (313)
192 PRK05939 hypothetical protein; 57.3 15 0.00033 33.3 4.2 29 42-70 142-170 (397)
193 cd03174 DRE_TIM_metallolyase D 57.3 81 0.0018 26.3 8.5 19 118-137 147-165 (265)
194 cd06544 GH18_narbonin Narbonin 57.3 43 0.00092 28.5 6.7 59 114-195 96-154 (253)
195 PLN02801 beta-amylase 56.5 26 0.00056 32.9 5.5 59 6-76 37-102 (517)
196 COG0134 TrpC Indole-3-glycerol 55.9 16 0.00034 31.2 3.7 22 47-68 142-163 (254)
197 PTZ00445 p36-lilke protein; Pr 55.7 20 0.00043 29.9 4.2 55 11-66 34-96 (219)
198 PRK09028 cystathionine beta-ly 54.9 18 0.00038 33.0 4.1 30 42-71 157-186 (394)
199 TIGR01324 cysta_beta_ly_B cyst 54.6 18 0.00039 32.6 4.2 30 42-71 146-175 (377)
200 cd04795 SIS SIS domain. SIS (S 54.5 17 0.00038 24.5 3.2 33 34-66 46-79 (87)
201 PRK00278 trpC indole-3-glycero 54.2 17 0.00038 31.0 3.8 23 46-68 145-167 (260)
202 cd00609 AAT_like Aspartate ami 53.5 15 0.00033 31.5 3.4 27 46-72 150-176 (350)
203 PF15640 Tox-MPTase4: Metallop 53.5 15 0.00032 27.8 2.8 26 42-67 16-41 (132)
204 PRK05660 HemN family oxidoredu 53.3 25 0.00054 31.7 4.8 64 10-76 108-172 (378)
205 cd05013 SIS_RpiR RpiR-like pro 52.9 19 0.00041 26.5 3.5 33 34-66 59-92 (139)
206 PRK08446 coproporphyrinogen II 52.3 29 0.00063 30.9 5.1 65 9-76 98-163 (350)
207 PF07071 DUF1341: Protein of u 52.3 31 0.00067 28.5 4.7 42 9-64 138-180 (218)
208 PLN02803 beta-amylase 52.2 34 0.00074 32.3 5.5 59 6-76 107-172 (548)
209 cd02878 GH18_zymocin_alpha Zym 51.7 19 0.00042 32.0 3.8 29 112-140 88-116 (345)
210 PRK05968 hypothetical protein; 51.6 21 0.00046 32.2 4.2 29 42-70 158-186 (389)
211 TIGR01212 radical SAM protein, 51.6 1.6E+02 0.0035 25.5 10.5 97 46-190 161-257 (302)
212 PRK12581 oxaloacetate decarbox 51.6 1.3E+02 0.0028 28.2 9.3 26 115-141 161-187 (468)
213 PRK08208 coproporphyrinogen II 51.6 25 0.00054 32.3 4.6 64 10-76 142-206 (430)
214 PRK02227 hypothetical protein; 50.9 24 0.00052 29.8 4.0 49 12-66 137-185 (238)
215 PTZ00413 lipoate synthase; Pro 50.9 34 0.00075 31.1 5.2 66 2-73 306-374 (398)
216 TIGR03127 RuMP_HxlB 6-phospho 50.8 34 0.00073 27.0 4.8 33 34-66 71-104 (179)
217 COG1105 FruK Fructose-1-phosph 50.8 19 0.00042 31.7 3.6 22 47-68 145-166 (310)
218 PRK13347 coproporphyrinogen II 50.7 27 0.00058 32.3 4.7 64 10-76 153-217 (453)
219 COG1891 Uncharacterized protei 50.5 9.5 0.00021 30.8 1.4 22 46-67 165-186 (235)
220 TIGR00538 hemN oxygen-independ 50.4 26 0.00056 32.4 4.6 64 10-76 152-216 (455)
221 cd06454 KBL_like KBL_like; thi 50.3 13 0.00028 32.3 2.5 27 44-70 145-171 (349)
222 TIGR01211 ELP3 histone acetylt 50.3 24 0.00051 33.5 4.3 65 9-76 206-270 (522)
223 COG1060 ThiH Thiamine biosynth 50.1 25 0.00054 31.8 4.2 66 7-76 159-227 (370)
224 TIGR01140 L_thr_O3P_dcar L-thr 49.9 19 0.00041 31.5 3.5 27 46-72 143-169 (330)
225 PLN02389 biotin synthase 49.8 31 0.00068 31.2 4.9 59 10-76 179-240 (379)
226 cd07940 DRE_TIM_IPMS 2-isoprop 49.5 1.6E+02 0.0035 24.9 10.3 19 47-65 113-131 (268)
227 PRK12595 bifunctional 3-deoxy- 49.4 47 0.001 29.9 5.9 56 8-68 134-189 (360)
228 cd01494 AAT_I Aspartate aminot 49.2 12 0.00027 28.2 2.0 27 45-71 106-132 (170)
229 PRK07050 cystathionine beta-ly 49.2 25 0.00053 31.9 4.1 31 42-72 161-191 (394)
230 COG1168 MalY Bifunctional PLP- 49.0 21 0.00045 32.3 3.5 23 46-68 176-198 (388)
231 PRK09249 coproporphyrinogen II 48.9 32 0.0007 31.8 4.9 64 10-76 152-216 (453)
232 cd06502 TA_like Low-specificit 48.8 18 0.0004 31.2 3.2 24 46-69 144-167 (338)
233 TIGR01814 kynureninase kynuren 48.7 15 0.00032 33.2 2.6 28 42-69 182-209 (406)
234 PF02679 ComA: (2R)-phospho-3- 48.7 36 0.00079 28.9 4.8 50 7-69 85-134 (244)
235 cd05014 SIS_Kpsf KpsF-like pro 48.6 25 0.00054 25.8 3.5 33 34-66 46-79 (128)
236 cd00614 CGS_like CGS_like: Cys 48.6 16 0.00035 32.6 2.8 29 42-70 136-164 (369)
237 PLN00197 beta-amylase; Provisi 48.5 42 0.00092 31.9 5.5 58 7-76 128-192 (573)
238 cd02873 GH18_IDGF The IDGF's ( 48.2 22 0.00049 32.5 3.7 29 111-139 101-129 (413)
239 PF13580 SIS_2: SIS domain; PD 47.7 18 0.00039 27.5 2.6 33 34-66 102-135 (138)
240 COG2200 Rtn c-di-GMP phosphodi 47.6 29 0.00063 29.4 4.1 60 8-69 138-214 (256)
241 cd07945 DRE_TIM_CMS Leptospira 47.5 1.9E+02 0.004 25.0 9.5 57 47-141 114-171 (280)
242 PRK07379 coproporphyrinogen II 47.4 31 0.00068 31.3 4.6 64 10-76 116-180 (400)
243 PRK08444 hypothetical protein; 47.4 37 0.0008 30.5 4.9 64 8-73 150-214 (353)
244 PLN02509 cystathionine beta-ly 47.3 27 0.00059 32.5 4.2 29 42-70 228-256 (464)
245 PRK08195 4-hyroxy-2-oxovalerat 46.2 2.1E+02 0.0046 25.4 11.5 24 46-69 113-136 (337)
246 PLN02905 beta-amylase 46.2 43 0.00094 32.4 5.3 59 6-76 286-351 (702)
247 TIGR00423 radical SAM domain p 46.1 48 0.001 28.9 5.4 63 9-74 107-171 (309)
248 PF05691 Raffinose_syn: Raffin 46.0 3.1E+02 0.0067 27.4 11.1 68 111-192 361-429 (747)
249 cd05005 SIS_PHI Hexulose-6-pho 45.9 47 0.001 26.2 4.9 33 34-66 74-107 (179)
250 TIGR03699 mena_SCO4550 menaqui 45.8 43 0.00093 29.5 5.1 62 9-76 143-208 (340)
251 PRK13957 indole-3-glycerol-pho 45.8 27 0.00059 29.7 3.6 23 46-68 136-158 (247)
252 PRK09331 Sep-tRNA:Cys-tRNA syn 45.7 22 0.00048 31.9 3.3 30 42-71 169-198 (387)
253 PRK09936 hypothetical protein; 45.5 38 0.00083 29.5 4.5 53 10-71 42-95 (296)
254 cd05017 SIS_PGI_PMI_1 The memb 45.5 28 0.0006 25.6 3.3 32 35-66 43-75 (119)
255 PRK08960 hypothetical protein; 45.4 28 0.0006 31.1 3.9 29 46-74 183-211 (387)
256 cd06452 SepCysS Sep-tRNA:Cys-t 45.3 18 0.00039 31.9 2.7 29 43-71 151-179 (361)
257 PRK06582 coproporphyrinogen II 45.3 40 0.00087 30.6 4.9 65 9-76 111-175 (390)
258 PRK08599 coproporphyrinogen II 45.0 36 0.00077 30.5 4.5 35 42-76 130-165 (377)
259 KOG2806|consensus 45.0 55 0.0012 30.1 5.8 93 47-185 105-199 (432)
260 cd05008 SIS_GlmS_GlmD_1 SIS (S 44.9 29 0.00062 25.4 3.3 33 34-66 45-78 (126)
261 PRK08247 cystathionine gamma-s 44.8 32 0.0007 30.7 4.2 27 44-70 149-175 (366)
262 PF14885 GHL15: Hypothetical g 44.7 61 0.0013 22.4 4.6 34 107-140 43-76 (79)
263 COG0826 Collagenase and relate 44.6 26 0.00055 31.4 3.4 57 7-69 14-70 (347)
264 PLN02746 hydroxymethylglutaryl 44.5 2.4E+02 0.0051 25.3 9.6 24 117-141 197-221 (347)
265 PRK07269 cystathionine gamma-s 44.5 21 0.00045 32.0 2.9 27 44-70 149-175 (364)
266 PRK07568 aspartate aminotransf 44.5 27 0.00058 31.2 3.6 28 46-73 180-207 (397)
267 cd00617 Tnase_like Tryptophana 44.3 28 0.0006 32.1 3.7 24 46-69 171-194 (431)
268 PF01276 OKR_DC_1: Orn/Lys/Arg 44.2 7.6 0.00016 35.7 0.0 28 42-69 178-205 (417)
269 PLN02705 beta-amylase 44.2 47 0.001 32.0 5.2 59 6-76 268-333 (681)
270 PF04476 DUF556: Protein of un 44.2 36 0.00077 28.7 4.0 21 46-66 165-185 (235)
271 PRK09250 fructose-bisphosphate 44.2 27 0.00058 31.3 3.4 24 47-70 178-201 (348)
272 PLN02651 cysteine desulfurase 44.2 20 0.00044 31.7 2.8 28 42-69 149-176 (364)
273 COG4724 Endo-beta-N-acetylgluc 43.9 1.2E+02 0.0025 27.9 7.3 122 51-217 130-251 (553)
274 PRK07812 O-acetylhomoserine am 43.8 20 0.00044 33.0 2.8 29 42-70 166-194 (436)
275 TIGR03217 4OH_2_O_val_ald 4-hy 43.7 2.3E+02 0.0051 25.1 11.6 23 118-141 144-167 (333)
276 PF00218 IGPS: Indole-3-glycer 43.6 30 0.00065 29.5 3.6 22 47-68 144-165 (254)
277 PRK05406 LamB/YcsF family prot 43.4 2.1E+02 0.0045 24.4 9.8 108 42-193 38-145 (246)
278 TIGR01329 cysta_beta_ly_E cyst 43.3 21 0.00046 32.1 2.8 29 42-70 142-170 (378)
279 COG1533 SplB DNA repair photol 43.3 43 0.00093 29.3 4.6 54 10-75 173-226 (297)
280 PF00266 Aminotran_5: Aminotra 43.1 15 0.00032 32.6 1.8 36 34-69 141-177 (371)
281 PRK09057 coproporphyrinogen II 43.1 35 0.00076 30.8 4.1 64 10-76 105-168 (380)
282 TIGR01437 selA_rel uncharacter 43.0 19 0.00042 32.1 2.5 28 44-71 162-189 (363)
283 PRK08445 hypothetical protein; 42.9 84 0.0018 28.1 6.5 60 9-73 144-207 (348)
284 TIGR01265 tyr_nico_aTase tyros 42.7 35 0.00077 30.7 4.2 28 47-74 188-215 (403)
285 TIGR03551 F420_cofH 7,8-dideme 42.6 41 0.00088 29.8 4.4 63 9-73 141-204 (343)
286 TIGR03471 HpnJ hopanoid biosyn 42.5 47 0.001 30.8 5.0 31 46-76 321-351 (472)
287 PLN02161 beta-amylase 42.4 82 0.0018 29.8 6.4 58 7-76 118-182 (531)
288 PRK05958 8-amino-7-oxononanoat 42.2 19 0.00042 31.7 2.3 28 43-70 180-207 (385)
289 PLN02721 threonine aldolase 42.1 31 0.00067 30.0 3.6 23 47-69 157-179 (353)
290 PLN00145 tyrosine/nicotianamin 42.0 31 0.00067 31.5 3.7 29 47-75 209-237 (430)
291 PRK01278 argD acetylornithine 42.0 36 0.00079 30.4 4.1 30 46-75 194-223 (389)
292 PRK06108 aspartate aminotransf 41.9 30 0.00065 30.6 3.5 28 46-73 176-203 (382)
293 PLN00175 aminotransferase fami 41.8 34 0.00074 31.0 3.9 29 46-74 205-233 (413)
294 PF00232 Glyco_hydro_1: Glycos 41.8 35 0.00076 31.6 4.0 51 9-69 61-120 (455)
295 PRK07811 cystathionine gamma-s 41.7 24 0.00051 31.9 2.9 30 42-71 157-186 (388)
296 PRK04302 triosephosphate isome 41.6 50 0.0011 27.3 4.6 22 46-67 99-120 (223)
297 PRK05764 aspartate aminotransf 41.3 31 0.00068 30.7 3.6 26 47-72 183-208 (393)
298 PRK14012 cysteine desulfurase; 41.3 33 0.00071 30.9 3.7 27 44-70 157-183 (404)
299 TIGR00858 bioF 8-amino-7-oxono 41.2 21 0.00046 31.0 2.4 27 44-70 159-185 (360)
300 cd05710 SIS_1 A subgroup of th 41.2 37 0.0008 25.0 3.4 33 34-66 46-79 (120)
301 TIGR03581 EF_0839 conserved hy 41.1 49 0.0011 27.7 4.3 43 8-63 137-179 (236)
302 TIGR02127 pyrF_sub2 orotidine 41.1 33 0.00071 29.4 3.5 30 42-71 65-96 (261)
303 PRK07777 aminotransferase; Val 41.1 34 0.00074 30.5 3.8 29 46-74 177-205 (387)
304 PRK00125 pyrF orotidine 5'-pho 41.1 30 0.00066 29.9 3.3 32 42-73 65-98 (278)
305 PF04343 DUF488: Protein of un 41.0 34 0.00073 25.4 3.2 26 50-75 2-27 (122)
306 PRK07324 transaminase; Validat 40.9 53 0.0011 29.2 5.0 29 46-74 171-199 (373)
307 PRK15447 putative protease; Pr 40.8 33 0.00071 30.0 3.5 46 11-66 20-66 (301)
308 PRK06294 coproporphyrinogen II 40.8 53 0.0011 29.5 4.9 65 9-76 103-168 (370)
309 COG0269 SgbH 3-hexulose-6-phos 40.5 47 0.001 27.7 4.1 40 37-76 82-121 (217)
310 PRK11658 UDP-4-amino-4-deoxy-L 40.4 22 0.00047 31.9 2.4 30 42-71 129-158 (379)
311 TIGR00474 selA seryl-tRNA(sec) 40.3 21 0.00046 33.1 2.3 24 46-69 230-253 (454)
312 PF12683 DUF3798: Protein of u 40.0 64 0.0014 27.9 5.0 76 50-133 119-201 (275)
313 TIGR01325 O_suc_HS_sulf O-succ 39.9 25 0.00054 31.6 2.7 30 42-71 150-179 (380)
314 PRK08175 aminotransferase; Val 39.9 33 0.00073 30.7 3.5 28 46-73 182-209 (395)
315 PF01565 FAD_binding_4: FAD bi 39.7 41 0.00089 25.1 3.5 23 45-67 8-30 (139)
316 PRK06939 2-amino-3-ketobutyrat 39.7 26 0.00057 31.0 2.8 30 42-71 185-214 (397)
317 COG3469 Chitinase [Carbohydrat 39.6 1.1E+02 0.0024 26.4 6.2 66 42-141 79-144 (332)
318 COG0436 Aspartate/tyrosine/aro 39.6 35 0.00076 31.0 3.6 31 46-76 181-211 (393)
319 PRK09058 coproporphyrinogen II 39.4 56 0.0012 30.2 5.0 65 9-76 163-228 (449)
320 cd04870 ACT_PSP_1 CT domains f 39.3 1E+02 0.0022 20.4 5.2 66 2-67 6-74 (75)
321 COG1441 MenC O-succinylbenzoat 39.3 32 0.0007 29.1 3.0 29 42-70 237-266 (321)
322 PRK13237 tyrosine phenol-lyase 39.3 36 0.00077 31.8 3.6 23 47-69 197-219 (460)
323 cd00616 AHBA_syn 3-amino-5-hyd 39.3 24 0.00052 30.7 2.4 29 42-70 114-142 (352)
324 PF14307 Glyco_tran_WbsX: Glyc 39.1 37 0.00081 30.2 3.7 28 108-139 52-79 (345)
325 cd08555 PI-PLCc_GDPD_SF Cataly 39.1 35 0.00075 27.1 3.2 20 50-69 138-157 (179)
326 PRK09082 methionine aminotrans 39.1 30 0.00066 30.9 3.1 29 46-74 181-209 (386)
327 TIGR03235 DNA_S_dndA cysteine 39.1 27 0.00058 30.7 2.7 33 42-74 149-183 (353)
328 PF04914 DltD_C: DltD C-termin 39.0 46 0.00099 25.4 3.6 56 47-132 35-90 (130)
329 PRK08056 threonine-phosphate d 39.0 36 0.00078 30.0 3.5 28 46-73 160-187 (356)
330 PRK07683 aminotransferase A; V 38.9 47 0.001 29.7 4.3 28 46-73 179-206 (387)
331 PRK11059 regulatory protein Cs 38.8 33 0.00071 33.1 3.5 69 4-72 531-614 (640)
332 PRK06852 aldolase; Validated 38.7 38 0.00082 29.8 3.5 24 47-70 153-176 (304)
333 TIGR02539 SepCysS Sep-tRNA:Cys 38.7 30 0.00065 30.7 3.0 30 42-71 157-186 (370)
334 PRK13238 tnaA tryptophanase/L- 38.7 38 0.00082 31.5 3.7 23 46-68 196-218 (460)
335 PRK06225 aspartate aminotransf 38.6 37 0.0008 30.1 3.6 26 46-71 175-200 (380)
336 cd03869 M14_CPX_like Peptidase 38.5 38 0.00083 31.0 3.6 45 23-68 276-338 (405)
337 TIGR03470 HpnH hopanoid biosyn 38.5 1.7E+02 0.0036 25.7 7.6 29 42-70 143-171 (318)
338 cd04724 Tryptophan_synthase_al 38.4 92 0.002 26.1 5.8 27 47-73 115-141 (242)
339 PTZ00376 aspartate aminotransf 38.3 51 0.0011 29.7 4.5 30 46-75 194-223 (404)
340 TIGR01264 tyr_amTase_E tyrosin 38.3 38 0.00083 30.3 3.7 29 46-74 186-214 (401)
341 COG0320 LipA Lipoate synthase 38.2 57 0.0012 28.4 4.4 58 2-66 224-285 (306)
342 PLN02656 tyrosine transaminase 38.1 36 0.00077 30.8 3.4 28 47-74 188-215 (409)
343 PF13378 MR_MLE_C: Enolase C-t 38.0 23 0.00049 25.6 1.8 31 37-67 20-52 (111)
344 PLN02187 rooty/superroot1 38.0 40 0.00087 31.2 3.8 29 46-74 222-250 (462)
345 cd08580 GDPD_Rv2277c_like Glyc 38.0 35 0.00075 29.2 3.2 19 51-69 219-238 (263)
346 PRK05957 aspartate aminotransf 37.9 39 0.00084 30.2 3.6 29 46-74 178-206 (389)
347 cd04726 KGPDC_HPS 3-Keto-L-gul 37.9 45 0.00097 26.7 3.7 32 44-75 86-117 (202)
348 TIGR01822 2am3keto_CoA 2-amino 37.9 29 0.00063 30.8 2.8 29 42-70 181-209 (393)
349 PRK06348 aspartate aminotransf 37.8 41 0.00088 30.0 3.7 29 46-74 180-208 (384)
350 PRK15407 lipopolysaccharide bi 37.7 41 0.00088 31.0 3.8 31 42-72 167-197 (438)
351 TIGR02326 transamin_PhnW 2-ami 37.5 27 0.00058 30.8 2.5 28 42-69 140-167 (363)
352 PRK13520 L-tyrosine decarboxyl 37.5 21 0.00046 31.3 1.8 28 43-70 163-190 (371)
353 PRK08134 O-acetylhomoserine am 37.4 30 0.00065 31.8 2.8 26 45-70 163-188 (433)
354 PRK07582 cystathionine gamma-l 37.4 27 0.00059 31.2 2.5 27 44-70 145-171 (366)
355 TIGR02006 IscS cysteine desulf 37.3 30 0.00064 31.1 2.8 28 42-69 153-180 (402)
356 PRK13561 putative diguanylate 37.3 23 0.00049 34.1 2.1 67 5-71 533-614 (651)
357 cd06450 DOPA_deC_like DOPA dec 37.1 27 0.0006 30.3 2.5 31 42-72 159-189 (345)
358 cd07944 DRE_TIM_HOA_like 4-hyd 37.0 2.6E+02 0.0057 23.8 10.2 23 118-141 139-162 (266)
359 TIGR03812 tyr_de_CO2_Arch tyro 36.9 25 0.00055 30.9 2.2 28 43-70 165-192 (373)
360 TIGR03539 DapC_actino succinyl 36.9 38 0.00083 29.8 3.4 29 46-74 160-188 (357)
361 PRK08776 cystathionine gamma-s 36.8 31 0.00068 31.4 2.8 30 42-71 156-185 (405)
362 PLN02368 alanine transaminase 36.8 45 0.00097 30.4 3.8 29 46-74 228-256 (407)
363 PF01041 DegT_DnrJ_EryC1: DegT 36.7 29 0.00063 30.8 2.6 33 42-74 121-153 (363)
364 PRK15029 arginine decarboxylas 36.7 27 0.00058 34.7 2.5 27 42-68 322-348 (755)
365 cd00378 SHMT Serine-glycine hy 36.6 29 0.00063 31.0 2.6 28 42-69 170-197 (402)
366 PF10096 DUF2334: Uncharacteri 36.5 66 0.0014 27.1 4.6 36 40-76 8-44 (243)
367 TIGR03392 FeS_syn_CsdA cystein 36.5 28 0.0006 31.2 2.4 29 42-70 168-196 (398)
368 TIGR01976 am_tr_V_VC1184 cyste 36.4 31 0.00067 30.7 2.7 28 42-69 167-194 (397)
369 TIGR02618 tyr_phenol_ly tyrosi 36.3 43 0.00094 31.1 3.6 23 47-69 190-212 (450)
370 PRK07810 O-succinylhomoserine 36.2 32 0.0007 31.2 2.8 31 42-72 166-196 (403)
371 cd07939 DRE_TIM_NifV Streptomy 36.2 2.6E+02 0.0057 23.5 10.0 21 117-138 139-159 (259)
372 PRK10060 RNase II stability mo 36.2 17 0.00037 35.3 1.1 67 5-71 540-621 (663)
373 PRK09148 aminotransferase; Val 36.1 41 0.00089 30.3 3.5 29 46-74 183-211 (405)
374 PRK08133 O-succinylhomoserine 36.0 33 0.00071 31.0 2.8 29 42-70 157-185 (390)
375 PRK07503 methionine gamma-lyas 35.9 32 0.00069 31.2 2.7 30 42-71 161-190 (403)
376 PRK05942 aspartate aminotransf 35.9 41 0.0009 30.1 3.5 28 46-73 188-215 (394)
377 cd08582 GDPD_like_2 Glyceropho 35.8 38 0.00083 28.0 3.0 18 51-68 191-208 (233)
378 PRK13398 3-deoxy-7-phosphohept 35.6 84 0.0018 27.0 5.1 55 7-68 42-98 (266)
379 PRK10534 L-threonine aldolase; 35.6 44 0.00096 28.9 3.5 23 47-69 146-168 (333)
380 PRK14581 hmsF outer membrane N 35.6 4.5E+02 0.0097 26.0 11.9 123 8-139 336-466 (672)
381 TIGR03588 PseC UDP-4-keto-6-de 35.5 29 0.00063 30.9 2.4 29 42-70 129-157 (380)
382 cd01171 YXKO-related B.subtili 35.5 37 0.00081 28.4 3.0 33 37-69 79-112 (254)
383 TIGR03402 FeS_nifS cysteine de 35.4 29 0.00063 30.8 2.4 28 42-69 147-174 (379)
384 TIGR03531 selenium_SpcS O-phos 35.4 35 0.00076 31.6 2.9 29 46-74 220-248 (444)
385 PRK09276 LL-diaminopimelate am 35.3 45 0.00098 29.6 3.6 28 46-73 184-211 (385)
386 TIGR02026 BchE magnesium-proto 35.2 66 0.0014 30.1 4.8 32 45-76 320-351 (497)
387 TIGR01328 met_gam_lyase methio 35.2 36 0.00078 30.8 3.0 30 42-71 155-184 (391)
388 PRK04311 selenocysteine syntha 35.2 28 0.00062 32.4 2.3 25 45-69 234-258 (464)
389 PRK11706 TDP-4-oxo-6-deoxy-D-g 35.1 36 0.00077 30.4 2.9 33 42-74 127-159 (375)
390 KOG0053|consensus 35.1 34 0.00073 31.3 2.7 30 42-71 173-202 (409)
391 PRK15108 biotin synthase; Prov 35.0 93 0.002 27.7 5.5 63 9-76 136-198 (345)
392 PRK07671 cystathionine beta-ly 35.0 37 0.00079 30.5 3.0 31 42-72 145-175 (377)
393 PRK09265 aminotransferase AlaT 34.7 47 0.001 29.9 3.6 28 46-73 186-213 (404)
394 PRK08227 autoinducer 2 aldolas 34.7 46 0.001 28.6 3.4 20 47-66 126-145 (264)
395 TIGR03540 DapC_direct LL-diami 34.7 43 0.00094 29.7 3.4 28 46-73 182-209 (383)
396 PRK08064 cystathionine beta-ly 34.7 38 0.00082 30.6 3.0 29 42-70 149-177 (390)
397 PRK08898 coproporphyrinogen II 34.5 71 0.0015 28.9 4.7 64 10-76 123-186 (394)
398 TIGR03700 mena_SCO4494 putativ 34.3 86 0.0019 27.9 5.2 61 9-72 150-212 (351)
399 PRK05799 coproporphyrinogen II 34.3 73 0.0016 28.4 4.8 34 43-76 130-164 (374)
400 PRK05839 hypothetical protein; 34.3 42 0.00092 29.8 3.3 29 46-74 173-201 (374)
401 TIGR01979 sufS cysteine desulf 34.2 32 0.0007 30.7 2.5 29 42-70 170-198 (403)
402 TIGR00441 gmhA phosphoheptose 34.2 56 0.0012 25.3 3.5 33 34-66 78-111 (154)
403 TIGR01210 conserved hypothetic 34.2 53 0.0011 28.8 3.7 27 46-72 153-179 (313)
404 PRK12928 lipoyl synthase; Prov 34.1 65 0.0014 28.0 4.3 31 45-76 185-217 (290)
405 PRK06207 aspartate aminotransf 34.0 53 0.0012 29.6 3.9 29 46-74 196-224 (405)
406 cd06453 SufS_like Cysteine des 34.0 34 0.00074 30.1 2.6 27 43-69 151-177 (373)
407 TIGR02379 ECA_wecE TDP-4-keto- 33.8 38 0.00083 30.4 2.9 32 42-73 127-158 (376)
408 cd08562 GDPD_EcUgpQ_like Glyce 33.7 44 0.00094 27.3 3.0 18 51-68 189-206 (229)
409 PRK06176 cystathionine gamma-s 33.7 38 0.00081 30.5 2.8 30 42-71 145-174 (380)
410 COG3934 Endo-beta-mannanase [C 33.7 1.9E+02 0.0041 27.4 7.2 32 45-76 63-97 (587)
411 TIGR03128 RuMP_HxlA 3-hexulose 33.5 61 0.0013 26.1 3.8 23 46-68 87-109 (206)
412 PTZ00433 tyrosine aminotransfe 33.5 51 0.0011 29.7 3.7 28 46-73 195-222 (412)
413 TIGR00106 uncharacterized prot 33.4 73 0.0016 22.9 3.8 31 45-75 46-81 (97)
414 PF01408 GFO_IDH_MocA: Oxidore 33.4 62 0.0013 23.2 3.6 26 42-67 94-119 (120)
415 smart00733 Mterf Mitochondrial 33.4 32 0.0007 17.8 1.5 15 7-21 17-31 (31)
416 PRK05926 hypothetical protein; 33.3 66 0.0014 29.0 4.3 62 9-75 169-234 (370)
417 PRK07865 N-succinyldiaminopime 33.2 52 0.0011 29.0 3.6 29 46-74 166-194 (364)
418 PRK09295 bifunctional cysteine 33.0 36 0.00078 30.6 2.6 28 42-69 175-202 (406)
419 PLN02855 Bifunctional selenocy 33.0 36 0.00077 30.8 2.6 29 42-70 184-212 (424)
420 PLN00143 tyrosine/nicotianamin 33.0 54 0.0012 29.6 3.8 29 46-74 188-216 (409)
421 PRK12928 lipoyl synthase; Prov 32.9 1.2E+02 0.0026 26.3 5.7 58 7-70 220-280 (290)
422 TIGR03537 DapC succinyldiamino 32.9 53 0.0012 28.8 3.6 28 46-73 154-181 (350)
423 cd08568 GDPD_TmGDE_like Glycer 32.9 44 0.00094 27.5 2.9 18 51-68 184-201 (226)
424 PRK08912 hypothetical protein; 32.8 46 0.00099 29.6 3.2 27 46-72 177-203 (387)
425 TIGR03301 PhnW-AepZ 2-aminoeth 32.7 56 0.0012 28.3 3.7 29 42-70 136-164 (355)
426 PRK00414 gmhA phosphoheptose i 32.7 55 0.0012 26.5 3.4 33 34-66 110-143 (192)
427 PF01380 SIS: SIS domain SIS d 32.6 54 0.0012 23.8 3.1 31 34-64 52-83 (131)
428 PF01729 QRPTase_C: Quinolinat 32.5 1.5E+02 0.0033 23.5 5.9 38 125-192 95-132 (169)
429 PRK09454 ugpQ cytoplasmic glyc 32.5 47 0.001 27.9 3.0 18 51-68 199-216 (249)
430 PRK12414 putative aminotransfe 32.5 43 0.00092 29.9 3.0 28 47-74 181-208 (384)
431 TIGR03550 F420_cofG 7,8-dideme 32.4 97 0.0021 27.2 5.2 29 47-76 148-176 (322)
432 cd08571 GDPD_SHV3_plant Glycer 32.4 45 0.00098 29.1 3.0 19 51-69 241-259 (302)
433 PRK07681 aspartate aminotransf 32.4 53 0.0011 29.5 3.6 28 46-73 184-211 (399)
434 cd08556 GDPD Glycerophosphodie 32.3 45 0.00099 26.0 2.8 19 51-69 150-168 (189)
435 PLN02822 serine palmitoyltrans 32.3 42 0.00091 31.3 3.0 30 42-71 256-285 (481)
436 PRK10874 cysteine sulfinate de 32.2 37 0.00079 30.4 2.5 29 42-70 171-199 (401)
437 PF13380 CoA_binding_2: CoA bi 32.2 56 0.0012 24.1 3.1 40 8-66 68-107 (116)
438 TIGR02617 tnaA_trp_ase tryptop 32.2 52 0.0011 30.7 3.5 24 46-69 202-225 (467)
439 PRK06702 O-acetylhomoserine am 32.1 36 0.00078 31.4 2.4 29 42-70 154-186 (432)
440 PTZ00094 serine hydroxymethylt 32.1 39 0.00085 31.1 2.7 28 42-69 191-218 (452)
441 PRK08248 O-acetylhomoserine am 32.0 43 0.00094 30.8 3.0 30 42-71 160-189 (431)
442 PRK05093 argD bifunctional N-s 32.0 63 0.0014 29.1 4.0 30 46-75 203-232 (403)
443 cd08574 GDPD_GDE_2_3_6 Glycero 32.0 45 0.00097 28.1 2.9 18 51-68 213-230 (252)
444 PRK13937 phosphoheptose isomer 31.9 62 0.0013 26.0 3.6 32 35-66 106-138 (188)
445 TIGR01825 gly_Cac_T_rel pyrido 31.9 41 0.00089 29.7 2.8 28 45-72 177-204 (385)
446 cd08573 GDPD_GDE1 Glycerophosp 31.8 48 0.001 28.1 3.0 19 51-69 218-236 (258)
447 PRK00854 rocD ornithine--oxo-a 31.7 64 0.0014 28.9 4.0 29 47-75 207-235 (401)
448 PF15614 WHIM3: WSTF, HB1, Itc 31.7 32 0.0007 21.3 1.4 20 44-63 4-24 (46)
449 PRK06358 threonine-phosphate d 31.6 58 0.0012 28.7 3.6 30 45-74 158-187 (354)
450 TIGR00510 lipA lipoate synthas 31.5 1E+02 0.0022 27.0 5.1 59 6-70 222-283 (302)
451 TIGR03576 pyridox_MJ0158 pyrid 31.5 58 0.0013 28.9 3.6 25 47-71 154-178 (346)
452 PRK07309 aromatic amino acid a 31.5 59 0.0013 29.1 3.7 28 46-73 184-211 (391)
453 cd08579 GDPD_memb_like Glycero 31.4 48 0.001 27.1 2.9 18 51-68 180-197 (220)
454 PRK13361 molybdenum cofactor b 31.4 75 0.0016 27.9 4.3 60 8-70 103-163 (329)
455 cd08559 GDPD_periplasmic_GlpQ_ 31.3 48 0.0011 28.7 3.0 19 51-69 246-264 (296)
456 cd00610 OAT_like Acetyl ornith 30.9 60 0.0013 28.9 3.7 27 46-72 210-236 (413)
457 COG2355 Zn-dependent dipeptida 30.9 77 0.0017 28.0 4.1 55 3-62 235-290 (313)
458 PRK00011 glyA serine hydroxyme 30.9 44 0.00095 30.1 2.8 28 42-69 174-201 (416)
459 TIGR03542 DAPAT_plant LL-diami 30.9 74 0.0016 28.6 4.3 28 46-73 191-218 (402)
460 TIGR01977 am_tr_V_EF2568 cyste 30.8 40 0.00086 29.7 2.5 29 42-70 148-176 (376)
461 PRK08249 cystathionine gamma-s 30.8 45 0.00097 30.3 2.8 30 42-71 160-189 (398)
462 PF03009 GDPD: Glycerophosphor 30.7 43 0.00092 27.3 2.5 18 51-68 212-229 (256)
463 PRK07550 hypothetical protein; 30.6 59 0.0013 28.9 3.6 28 46-73 181-208 (386)
464 PRK08574 cystathionine gamma-s 30.6 43 0.00094 30.2 2.7 26 45-70 151-176 (385)
465 PLN02219 probable galactinol-- 30.5 5.7E+02 0.012 25.6 11.4 31 112-143 360-391 (775)
466 PRK08354 putative aminotransfe 30.5 57 0.0012 28.1 3.4 28 46-73 135-162 (311)
467 PRK05994 O-acetylhomoserine am 30.4 45 0.00098 30.5 2.8 30 42-71 159-188 (427)
468 TIGR01162 purE phosphoribosyla 30.3 76 0.0016 25.0 3.6 29 40-68 31-60 (156)
469 COG0794 GutQ Predicted sugar p 30.3 1.2E+02 0.0025 25.1 4.8 59 7-66 51-118 (202)
470 PRK13938 phosphoheptose isomer 30.3 67 0.0015 26.2 3.5 33 34-66 112-145 (196)
471 cd08575 GDPD_GDE4_like Glycero 30.2 50 0.0011 28.0 2.9 18 51-68 221-238 (264)
472 TIGR02666 moaA molybdenum cofa 30.2 1E+02 0.0022 27.0 5.0 60 8-70 101-162 (334)
473 cd08583 PI-PLCc_GDPD_SF_unchar 30.1 54 0.0012 27.2 3.0 17 51-67 195-211 (237)
474 PRK06107 aspartate aminotransf 30.0 56 0.0012 29.3 3.3 28 46-73 184-212 (402)
475 cd05006 SIS_GmhA Phosphoheptos 30.0 65 0.0014 25.3 3.4 33 34-66 100-133 (177)
476 PRK06084 O-acetylhomoserine am 30.0 46 0.00099 30.5 2.8 30 42-71 154-183 (425)
477 PRK05613 O-acetylhomoserine am 29.9 43 0.00093 30.9 2.6 26 45-70 169-194 (437)
478 PRK02947 hypothetical protein; 29.9 63 0.0014 27.2 3.4 32 35-66 106-138 (246)
479 smart00518 AP2Ec AP endonuclea 29.9 3.3E+02 0.0072 22.7 12.0 52 7-66 11-63 (273)
480 PRK10886 DnaA initiator-associ 29.9 70 0.0015 26.1 3.6 32 35-66 109-141 (196)
481 PRK07337 aminotransferase; Val 29.8 78 0.0017 28.2 4.2 27 47-73 182-208 (388)
482 PRK08068 transaminase; Reviewe 29.8 60 0.0013 29.0 3.4 27 46-72 185-211 (389)
483 PRK08057 cobalt-precorrin-6x r 29.7 1.1E+02 0.0023 26.1 4.7 24 42-68 49-72 (248)
484 PRK04366 glycine dehydrogenase 29.7 60 0.0013 30.3 3.5 26 44-69 220-246 (481)
485 PRK06425 histidinol-phosphate 29.6 66 0.0014 28.0 3.6 29 46-74 140-168 (332)
486 PRK08363 alanine aminotransfer 29.6 61 0.0013 29.0 3.5 28 46-73 184-211 (398)
487 cd08607 GDPD_GDE5 Glycerophosp 29.6 50 0.0011 28.3 2.8 21 51-71 248-268 (290)
488 PRK05937 8-amino-7-oxononanoat 29.5 49 0.0011 29.4 2.8 29 42-70 154-182 (370)
489 PRK06767 methionine gamma-lyas 29.3 48 0.0011 29.8 2.8 29 43-71 158-186 (386)
490 PRK13125 trpA tryptophan synth 29.3 1.5E+02 0.0033 24.8 5.7 26 47-72 115-140 (244)
491 cd08570 GDPD_YPL206cp_fungi Gl 29.3 57 0.0012 27.0 3.0 19 50-68 193-211 (234)
492 PRK07360 FO synthase subunit 2 29.3 96 0.0021 27.9 4.7 62 9-72 163-225 (371)
493 PRK07682 hypothetical protein; 29.2 63 0.0014 28.6 3.5 29 46-74 172-200 (378)
494 PLN02397 aspartate transaminas 29.2 73 0.0016 29.0 4.0 30 46-75 212-241 (423)
495 PLN03227 serine palmitoyltrans 29.0 55 0.0012 29.5 3.1 28 44-71 151-178 (392)
496 cd01830 XynE_like SGNH_hydrola 29.0 66 0.0014 25.8 3.3 21 47-67 105-125 (204)
497 PLN02242 methionine gamma-lyas 29.0 57 0.0012 29.8 3.2 28 44-71 176-203 (418)
498 PLN02483 serine palmitoyltrans 29.0 55 0.0012 30.6 3.2 29 42-70 251-279 (489)
499 PRK02936 argD acetylornithine 29.0 87 0.0019 27.7 4.4 29 45-73 185-213 (377)
500 PRK13307 bifunctional formalde 29.0 76 0.0016 29.0 3.9 39 36-74 251-289 (391)
No 1
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=100.00 E-value=2.1e-47 Score=360.91 Aligned_cols=225 Identities=58% Similarity=0.969 Sum_probs=207.3
Q ss_pred CCcCChH-HhhHHHHHcCccc----cCccCC--CCCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccC
Q psy9004 3 TNGFGTP-EQLKYLVDECHKA----GLFGTP--EQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 74 (237)
Q Consensus 3 ~~~~Gl~-~~L~yl~~lGv~~----pi~~~~--~~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~ 74 (237)
+++.+++ ++|+||++||+++ ||+..+ .+|||++.+|+++ ++|||+++||+||++||++||+||||+|+||++
T Consensus 247 gty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~nH~~ 326 (758)
T PLN02447 247 NSYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLGLRVLMDVVHSHAS 326 (758)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 4566765 4699999999987 888766 5899999999999 999999999999999999999999999999999
Q ss_pred CCccccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccCccccccCCCCCCC
Q psy9004 75 KNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGF 154 (237)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~~l~~~~~~~~~~~ 154 (237)
.+....+..++++...||+..+.+..+.|++..+|+.+++|+++|++++++|+++|+|||||||++++|+|.++++..++
T Consensus 327 ~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f 406 (758)
T PLN02447 327 KNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAF 406 (758)
T ss_pred ccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhCcccccccchhhhhccccCccccc
Confidence 87666667788877788887666677789988999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCccCChhHHHHHHHHHHHHHhhCCCeEEEEecCCCCCCcccccccCCccccccccCCcccccccc
Q psy9004 155 SGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGRPGLDKSFYG 227 (237)
Q Consensus 155 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~i~E~~~~~~~~~~~~~~~~~gfd~~~~~~~~~~~~~~ 227 (237)
++++.+.+|..++.++..||++++..+++.+|++++|||+.++.+.+|++..++|+||||.|+|++++.|.+.
T Consensus 407 ~~~~~~~~g~~~d~~a~~fL~~~N~~i~~~~p~~~~IAEd~s~~p~l~~p~~~GGlGFDykw~Mg~~~~~l~~ 479 (758)
T PLN02447 407 TGNYNEYFGMATDVDAVVYLMLANDLLHGLYPEAVTIAEDVSGMPTLCRPVQEGGVGFDYRLAMAIPDKWIEL 479 (758)
T ss_pred ccCcccccCCccChHHHHHHHHHHHHHHHhCCCeEEEEEcCCCCCCccccCCCCcCCcceEECCccchHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997654
No 2
>PLN02960 alpha-amylase
Probab=100.00 E-value=1.2e-44 Score=343.01 Aligned_cols=222 Identities=43% Similarity=0.776 Sum_probs=194.3
Q ss_pred CCcCChHHh-hHHHHHcCccc----cCccCC--CCCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccC
Q psy9004 3 TNGFGTPEQ-LKYLVDECHKA----GLFGTP--EQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 74 (237)
Q Consensus 3 ~~~~Gl~~~-L~yl~~lGv~~----pi~~~~--~~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~ 74 (237)
|+++|++++ |+||++|||++ ||+..+ .+|||++++|+++ ++|||+++|++||++||++||+||||+|+||++
T Consensus 413 gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDvV~NH~~ 492 (897)
T PLN02960 413 SSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDIVHSYAA 492 (897)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEecccccC
Confidence 588999976 99999999987 888655 5799999999999 999999999999999999999999999999999
Q ss_pred CCccccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccCccccccCCCCCCC
Q psy9004 75 KNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGF 154 (237)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~~l~~~~~~~~~~~ 154 (237)
.++...+..++++...||.....+..+.|+...+|+.+|+||++|++++++|+++|||||||+|++..|++.+++.. .+
T Consensus 493 ~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~EyhIDGfR~DAV~sMlY~d~g~~-~~ 571 (897)
T PLN02960 493 ADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYRVDGFQFHSLGSMLYTHNGFA-SF 571 (897)
T ss_pred CccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHCCCceeecccceeeeeccCcc-cc
Confidence 98655667788866567766555677889999999999999999999999999999999999999999998876642 33
Q ss_pred CCCcccccCccCChhHHHHHHHHHHHHHhhCCCeEEEEecCCCCCCcccccccCCccccccccCCcccccc
Q psy9004 155 SGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGRPGLDKSF 225 (237)
Q Consensus 155 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~i~E~~~~~~~~~~~~~~~~~gfd~~~~~~~~~~~~ 225 (237)
.+++...+...++.++..|++++++.+++..|++++|||+.+..+.++++...+|+||||.|+|+.++.|.
T Consensus 572 ~G~~~~~~n~~~d~~Ai~fL~~lN~~v~~~~P~vilIAEdss~~P~vt~P~~~GGLGFDYkwnmG~~~d~l 642 (897)
T PLN02960 572 TGDLDEYCNQYVDRDALIYLILANEMLHQLHPNIITIAEDATFYPGLCEPTSQGGLGFDYYVNLSPSEMWL 642 (897)
T ss_pred CCcccccCCccCCchHHHHHHHHHHHHHhhCCCeEEEEECCCCCCCccccCCCCCCCcccccCCCcHHHHH
Confidence 44444444445688899999999999999999999999999999999999999999999999999766554
No 3
>PRK14705 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.2e-43 Score=348.75 Aligned_cols=216 Identities=29% Similarity=0.512 Sum_probs=188.8
Q ss_pred CCcCChHHh-hHHHHHcCccc----cCccCC--CCCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccC
Q psy9004 3 TNGFGTPEQ-LKYLVDECHKA----GLFGTP--EQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 74 (237)
Q Consensus 3 ~~~~Gl~~~-L~yl~~lGv~~----pi~~~~--~~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~ 74 (237)
+++++++++ |+|||+||||+ ||+..| .+|||++.+|+++ ++|||+++||+||++||++||+||||+|+||++
T Consensus 762 ~~~~~l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~V~nH~~ 841 (1224)
T PRK14705 762 LGYRELAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDWVPAHFP 841 (1224)
T ss_pred CchHHHHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCC
Confidence 578899988 59999999987 887766 6899999999999 999999999999999999999999999999998
Q ss_pred CCccccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccCccccccCCCCCCC
Q psy9004 75 KNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGF 154 (237)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~~l~~~~~~~~~~~ 154 (237)
.+ .+.+..++++..+++.....+..+.|++..+|+.+++||++|++++++|+++|+|||||+|++.+|++.|++...
T Consensus 842 ~d-~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyhiDGfR~Dav~~mly~Dysr~~-- 918 (1224)
T PRK14705 842 KD-SWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFHIDGLRVDAVASMLYLDYSREE-- 918 (1224)
T ss_pred cc-hhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCCcEEEeehhhhhhccccccc--
Confidence 86 345566766533333333346678899999999999999999999999999999999999999999888765332
Q ss_pred CCCc-ccccCccCChhHHHHHHHHHHHHHhhCCCeEEEEecCCCCCCcccccccCCccccccccCCccc
Q psy9004 155 SGHY-DEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGRPGLD 222 (237)
Q Consensus 155 ~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~i~E~~~~~~~~~~~~~~~~~gfd~~~~~~~~~ 222 (237)
++| .+.+|+++|.++..||+++++.+++..|++++|||+++.++.++++...+|+|||+.|||++..
T Consensus 919 -g~w~pn~~gg~en~~ai~fl~~ln~~v~~~~p~~~~IAEest~~p~vt~p~~~GGlGFd~kWnmgwmh 986 (1224)
T PRK14705 919 -GQWRPNRFGGRENLEAISFLQEVNATVYKTHPGAVMIAEESTAFPGVTAPTSHGGLGFGLKWNMGWMH 986 (1224)
T ss_pred -ccccccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCcCccccccCCCccCCcEecchhhH
Confidence 334 4677888999999999999999999999999999999999999999999999999999999744
No 4
>PRK12313 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.2e-42 Score=329.50 Aligned_cols=215 Identities=31% Similarity=0.546 Sum_probs=178.0
Q ss_pred CCcCChHHhh-HHHHHcCccc----cCccCC--CCCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccC
Q psy9004 3 TNGFGTPEQL-KYLVDECHKA----GLFGTP--EQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 74 (237)
Q Consensus 3 ~~~~Gl~~~L-~yl~~lGv~~----pi~~~~--~~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~ 74 (237)
|+|+||+++| +||++|||++ ||+.+| .+|||++.||++| |+|||+++||+||++||++||+||||+|+||++
T Consensus 167 g~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~V~nH~~ 246 (633)
T PRK12313 167 LSYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDWVPGHFP 246 (633)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Confidence 6899999995 9999999987 898877 5899999999999 999999999999999999999999999999999
Q ss_pred CCccccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccCccccccCCCCCCC
Q psy9004 75 KNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGF 154 (237)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~~l~~~~~~~~~~~ 154 (237)
.++. .+..++++..+.+.....+..+.|+..++|+.||+||++|++++++|+++|||||||+|++.++++.+.+ ..+
T Consensus 247 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~iDG~R~D~~~~~~~~d~~-~~~- 323 (633)
T PRK12313 247 KDDD-GLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYHLDGLRVDAVSNMLYLDYD-EEG- 323 (633)
T ss_pred CCcc-cccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCcEEEEcChhhhhhcccc-ccc-
Confidence 8732 2334444322222222234456788889999999999999999999999999999999999888766544 221
Q ss_pred CCCcc-cccCccCChhHHHHHHHHHHHHHhhCCCeEEEEecCCCCCCcccccccCCccccccccCCccc
Q psy9004 155 SGHYD-EYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGRPGLD 222 (237)
Q Consensus 155 ~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~i~E~~~~~~~~~~~~~~~~~gfd~~~~~~~~~ 222 (237)
.|. +..|..++.++..||+++++.+++.+|++++|||.++..+..+.+...+++|||+.|+|++..
T Consensus 324 --~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~~~~~~~~~gg~gfd~~w~~~~~~ 390 (633)
T PRK12313 324 --EWTPNKYGGRENLEAIYFLQKLNEVVYLEHPDVLMIAEESTAWPKVTGPVEVGGLGFDYKWNMGWMN 390 (633)
T ss_pred --CcCCcccCCCCCcHHHHHHHHHHHHHHHHCCCeEEEEECCCCCccccccccCCCCCcCceeCcHHHH
Confidence 121 223444566788999999999999999999999999999999988888999999999987653
No 5
>PRK12568 glycogen branching enzyme; Provisional
Probab=100.00 E-value=9.4e-43 Score=328.75 Aligned_cols=218 Identities=28% Similarity=0.521 Sum_probs=184.5
Q ss_pred CCcCChHHh-hHHHHHcCccc----cCccCC--CCCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccC
Q psy9004 3 TNGFGTPEQ-LKYLVDECHKA----GLFGTP--EQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 74 (237)
Q Consensus 3 ~~~~Gl~~~-L~yl~~lGv~~----pi~~~~--~~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~ 74 (237)
++++|++++ |+||++|||++ ||+..| .+|||++.+|+++ ++|||+++||+||++||++||+||||+|+||++
T Consensus 266 ~~~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~ 345 (730)
T PRK12568 266 LDWPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWVSAHFP 345 (730)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCC
Confidence 367789998 59999999987 888776 5899999999999 999999999999999999999999999999999
Q ss_pred CCccccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccCccccccCCCCCCC
Q psy9004 75 KNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGF 154 (237)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~~l~~~~~~~~~~~ 154 (237)
.+. ..+..++++..+.......+....|+...+|+.+|+|+++|++++++|+++|||||||+|++.+|++.+++..+
T Consensus 346 ~d~-~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~-- 422 (730)
T PRK12568 346 DDA-HGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYHLDGLRVDAVASMLYRDYGRAE-- 422 (730)
T ss_pred ccc-cccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhCceEEEEcCHhHhhhhcccccc--
Confidence 863 23445555432222222334567888888999999999999999999999999999999999999887765333
Q ss_pred CCCc-ccccCccCChhHHHHHHHHHHHHHhhCCCeEEEEecCCCCCCcccccccCCccccccccCCccccc
Q psy9004 155 SGHY-DEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGRPGLDKS 224 (237)
Q Consensus 155 ~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~i~E~~~~~~~~~~~~~~~~~gfd~~~~~~~~~~~ 224 (237)
++| .+..|..++.++.+||+++++.+++.+|++++|||+++.++.++++...+|+|||+.|||++....
T Consensus 423 -g~w~pn~~gg~en~ea~~Fl~~ln~~v~~~~P~~~~IAEest~~p~vt~p~~~gGlGFd~kwn~gwm~d~ 492 (730)
T PRK12568 423 -GEWVPNAHGGRENLEAVAFLRQLNREIASQFPGVLTIAEESTAWPGVTAPISDGGLGFTHKWNMGWMHDT 492 (730)
T ss_pred -ccccccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCccccccccCCCCCcCcEeCChhHHHH
Confidence 334 244677788899999999999999999999999999999999999999999999999999975443
No 6
>PRK14706 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.2e-42 Score=327.62 Aligned_cols=215 Identities=30% Similarity=0.503 Sum_probs=185.4
Q ss_pred CCcCChHHhh-HHHHHcCccc----cCccCC--CCCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccC
Q psy9004 3 TNGFGTPEQL-KYLVDECHKA----GLFGTP--EQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 74 (237)
Q Consensus 3 ~~~~Gl~~~L-~yl~~lGv~~----pi~~~~--~~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~ 74 (237)
++++|++++| +||++||||+ |+...| .+|||++.+|+++ ++|||+++||+||++||++||+||||+|+||++
T Consensus 164 ~ty~~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~ 243 (639)
T PRK14706 164 LNYRELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFP 243 (639)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEecccccC
Confidence 4778899997 8999999987 887665 5899999999999 999999999999999999999999999999999
Q ss_pred CCccccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccCccccccCCCCCCC
Q psy9004 75 KNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGF 154 (237)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~~l~~~~~~~~~~~ 154 (237)
.+. ..+..++++..+.|.....+....|++..+|+.+|+||++|++++++|++++||||||+|++.+|++.+.+..+
T Consensus 244 ~~~-~~l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~-- 320 (639)
T PRK14706 244 TDE-SGLAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFHVDGLRVDAVASMLYLDFSRTE-- 320 (639)
T ss_pred cch-hhhhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeehheeecccCccc--
Confidence 873 34555666543434444445677899888999999999999999999999999999999999999887665321
Q ss_pred CCCcccccCccCChhHHHHHHHHHHHHHhhCCCeEEEEecCCCCCCcccccccCCccccccccCCcccc
Q psy9004 155 SGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGRPGLDK 223 (237)
Q Consensus 155 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~i~E~~~~~~~~~~~~~~~~~gfd~~~~~~~~~~ 223 (237)
-..+.+|..++.++..||+++++.+++.+|++++|||+++..+.++++... |+|||+.|+|++...
T Consensus 321 --~~~~~~gg~~n~~a~~fl~~ln~~v~~~~p~~~~iAE~~~~~~~v~~~~~~-G~gFD~~w~~~w~~~ 386 (639)
T PRK14706 321 --WVPNIHGGRENLEAIAFLKRLNEVTHHMAPGCMMIAEESTSFPGVTVPTPY-GLGFDYKWAMGWMND 386 (639)
T ss_pred --ccccccCCcccHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCcCcccccCC-CCccccEeccHHHHH
Confidence 134667888899999999999999999999999999999999999998765 999999999987543
No 7
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=100.00 E-value=1.9e-42 Score=326.73 Aligned_cols=214 Identities=34% Similarity=0.570 Sum_probs=177.7
Q ss_pred CCcCChHHhh-HHHHHcCccc----cCccCC--CCCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccC
Q psy9004 3 TNGFGTPEQL-KYLVDECHKA----GLFGTP--EQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 74 (237)
Q Consensus 3 ~~~~Gl~~~L-~yl~~lGv~~----pi~~~~--~~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~ 74 (237)
|+++||+++| +||++|||++ ||+.++ .+|||++.+|+++ ++|||+++||+||++||++||+||||+|+||++
T Consensus 153 g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~ 232 (613)
T TIGR01515 153 LSYRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFP 232 (613)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccCcC
Confidence 7899999997 9999999987 888876 5799999999999 999999999999999999999999999999999
Q ss_pred CCccccccCCCCCCCCccCCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccCccccccCCCCCC
Q psy9004 75 KNVLDGLNEFDGTQACFFHDG-PRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEG 153 (237)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~~l~~~~~~~~~~ 153 (237)
.+.. .+..+++. +.|+... ..+..+.|+..++|+.+|+||++|++++++|+++|||||||+|++.++.+.+++...+
T Consensus 233 ~~~~-~~~~~~~~-~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~ 310 (613)
T TIGR01515 233 KDDH-GLAEFDGT-PLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAVASMLYLDYSRDEG 310 (613)
T ss_pred Cccc-hhhccCCC-cceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCHHHhhhhccccccc
Confidence 8742 23334443 2233222 2234567888899999999999999999999999999999999998887665443221
Q ss_pred CCCCcc-cccCccCChhHHHHHHHHHHHHHhhCCCeEEEEecCCCCCCcccccccCCccccccccCCcc
Q psy9004 154 FSGHYD-EYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGRPGL 221 (237)
Q Consensus 154 ~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~i~E~~~~~~~~~~~~~~~~~gfd~~~~~~~~ 221 (237)
+|. +..+...+.++..||+++++.+++.+|++++|||.++.++..+.+...+|+|||+.|+|++.
T Consensus 311 ---~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~~~~~~~~~gg~gfd~~w~~~~~ 376 (613)
T TIGR01515 311 ---EWSPNEDGGRENLEAVDFLRKLNQTVYEAFPGVVTIAEESTEWPGVTRPTDEGGLGFHYKWNMGWM 376 (613)
T ss_pred ---cccccccCCcCChHHHHHHHHHHHHHHHHCCCeEEEEEeCCCCccccccccCCcCCcCeeeCchHH
Confidence 221 23344456778999999999999999999999999999999998888889999999998763
No 8
>PRK05402 glycogen branching enzyme; Provisional
Probab=100.00 E-value=3.4e-42 Score=330.36 Aligned_cols=218 Identities=34% Similarity=0.589 Sum_probs=180.6
Q ss_pred CCCcCChHHhh-HHHHHcCccc----cCccCC--CCCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeecccc
Q psy9004 2 RTNGFGTPEQL-KYLVDECHKA----GLFGTP--EQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHA 73 (237)
Q Consensus 2 ~~~~~Gl~~~L-~yl~~lGv~~----pi~~~~--~~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~ 73 (237)
.|+++||+++| +||++|||++ ||+..| .+|||++.||++| |+|||+++||+||++||++||+||||+|+||+
T Consensus 261 ~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~NH~ 340 (726)
T PRK05402 261 FLSYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDWVPAHF 340 (726)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence 36899999996 9999999987 888776 4799999999999 99999999999999999999999999999999
Q ss_pred CCCccccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccCccccccCCCCCC
Q psy9004 74 SKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEG 153 (237)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~~l~~~~~~~~~~ 153 (237)
+.++ ..+..++++..+.+.....+..+.|+...+|+.||+||++|++++++|++++||||||+|++.++++.+.+..++
T Consensus 341 ~~~~-~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~iDG~R~D~v~~~~~~~~~~~~g 419 (726)
T PRK05402 341 PKDA-HGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFHIDGLRVDAVASMLYLDYSRKEG 419 (726)
T ss_pred CCCc-cchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhCCcEEEECCHHHhhhcccccccc
Confidence 8863 233445544222222222345677888899999999999999999999999999999999999887776554333
Q ss_pred CCCCcccccCccCChhHHHHHHHHHHHHHhhCCCeEEEEecCCCCCCcccccccCCccccccccCCccc
Q psy9004 154 FSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGRPGLD 222 (237)
Q Consensus 154 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~i~E~~~~~~~~~~~~~~~~~gfd~~~~~~~~~ 222 (237)
.. ..+.+|..++.++..||+++++.+++.+|++++|||.++.++..+++...+|+|||+.|||++..
T Consensus 420 ~~--~~~~~~~~~~~~~~~fl~~~~~~~~~~~p~~~liaE~~~~~~~~~~~~~~~G~gfd~~wn~~~~~ 486 (726)
T PRK05402 420 EW--IPNIYGGRENLEAIDFLRELNAVVHEEFPGALTIAEESTAWPGVTRPTEEGGLGFGYKWNMGWMH 486 (726)
T ss_pred cc--ccccccCcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCcCccccccCCCCCCCceecCCcch
Confidence 21 12334555677889999999999999999999999999888888888888899999999988744
No 9
>PRK10785 maltodextrin glucosidase; Provisional
Probab=100.00 E-value=1.2e-40 Score=313.58 Aligned_cols=182 Identities=19% Similarity=0.217 Sum_probs=148.6
Q ss_pred CCCCcCChHHhhHHHHHcCccc----cCccCCCCCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCC
Q psy9004 1 MRTNGFGTPEQLKYLVDECHKA----GLFGTPEQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASK 75 (237)
Q Consensus 1 ~~~~~~Gl~~~L~yl~~lGv~~----pi~~~~~~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~ 75 (237)
+|||++||++||+||++|||++ |||+++++|||++.||++| |+|||.++|++||++||++|||||||+|+|||+.
T Consensus 174 ~GGDl~GI~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~ 253 (598)
T PRK10785 174 YGGDLDGISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVFNHTGD 253 (598)
T ss_pred cCcCHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCC
Confidence 4799999999999999999986 9999999999999999999 9999999999999999999999999999999999
Q ss_pred CccccccCCC----------CCCCCccCCCCCCCCCCCC----CCCCCCCCHHHHHHHHH----HHHHHHHh-CCCcEEE
Q psy9004 76 NVLDGLNEFD----------GTQACFFHDGPRGTHPLWD----SRLFNYSEIEVLRFLLS----NLRWYLEE-YQFDGFR 136 (237)
Q Consensus 76 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~----~~~ln~~~p~v~~~i~~----~~~~w~~~-~giDGfR 136 (237)
+|+++..... +....||.....+....|. .++||+.||+|+++|++ ++++|+++ +||||||
T Consensus 254 ~~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~~~~w~g~~~lPdLN~~np~v~~~l~~~~~~v~~~Wl~~~~giDG~R 333 (598)
T PRK10785 254 SHPWFDRHNRGTGGACHHPDSPWRDWYSFSDDGRALDWLGYASLPKLDFQSEEVVNEIYRGEDSIVRHWLKAPYNIDGWR 333 (598)
T ss_pred CCHHHHHhhccccccccCCCCCcceeeEECCCCCcCCcCCCCcCccccCCCHHHHHHHHhhhhHHHHHhhcCCCCCcEEE
Confidence 8764432111 1112365544333333443 36999999999999995 79999996 8999999
Q ss_pred ecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhhCCCeEEEEecCCCCCC
Q psy9004 137 FDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPA 200 (237)
Q Consensus 137 ~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~i~E~~~~~~~ 200 (237)
+|+|+++... . ......+||+++++++++.+|++++|||.|.....
T Consensus 334 lDva~~v~~~-------~-----------~~~~~~~f~~~~~~~vk~~~pd~~ligE~~~~~~~ 379 (598)
T PRK10785 334 LDVVHMLGEG-------G-----------GARNNLQHVAGITQAAKEENPEAYVLGEHFGDARQ 379 (598)
T ss_pred EecHhHhccc-------c-----------CccccHHHHHHHHHHHHhhCCCeEEEEeccCChhh
Confidence 9999877210 0 01124689999999999999999999999875433
No 10
>PLN03244 alpha-amylase; Provisional
Probab=100.00 E-value=1.3e-39 Score=304.17 Aligned_cols=193 Identities=46% Similarity=0.877 Sum_probs=178.7
Q ss_pred Cccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCCccccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCC
Q psy9004 34 LVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSE 112 (237)
Q Consensus 34 ~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~ 112 (237)
++++||++ ++|||+++||+||++||++||+||||+|+||++.+...++..++++...||+....+..+.|++..+|+.+
T Consensus 426 ~vt~fFApssRYGTPeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~ 505 (872)
T PLN03244 426 KVTNFFAASSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGD 505 (872)
T ss_pred ccCcccccCcccCCHHHHHHHHHHHHHCCCEEEEEecCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCC
Confidence 69999999 99999999999999999999999999999999998666777888877678887666778899999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhhCCCeEEEE
Q psy9004 113 IEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIA 192 (237)
Q Consensus 113 p~v~~~i~~~~~~w~~~~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~i~ 192 (237)
|+|+++|++++++|+++|+|||||+|++..|+|.++++ .++++++...++...+.++..||+.++..+++.+|++++||
T Consensus 506 ~EVr~FLLsna~yWleEyhIDGFRfDaVtSMLY~d~G~-~~f~g~~~~y~n~~~d~dAv~fL~laN~~ih~~~P~~itIA 584 (872)
T PLN03244 506 LDVLHFLISNLNWWITEYQIDGFQFHSLASMIYTHNGF-ASFNGDLDDYCNQYVDKDALMYLILANEILHALHPKIITIA 584 (872)
T ss_pred HHHHHHHHHHHHHHHHHhCcCcceeecchhheeecccc-ccccCCccccccccCCchHHHHHHHHHHHHHHhCCCeEEEE
Confidence 99999999999999999999999999999999999987 57777777777777889999999999999999999999999
Q ss_pred ecCCCCCCcccccccCCccccccccCCcccccccc
Q psy9004 193 EDVSGMPASCRPVTEGGTGFDYRLGRPGLDKSFYG 227 (237)
Q Consensus 193 E~~~~~~~~~~~~~~~~~gfd~~~~~~~~~~~~~~ 227 (237)
|+.++.+.+|++...||+||||.|+|+.++.|.+.
T Consensus 585 EDsS~~P~vt~Pv~~GGLGFDYKWnMgwmdd~lky 619 (872)
T PLN03244 585 EDATYYPGLCEPTSQGGLGFDYYVNLSAPDMWLDF 619 (872)
T ss_pred EcCCCCcCccccCCCCCCCccceecCcchHHHHHH
Confidence 99999999999999999999999999998888653
No 11
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.2e-39 Score=298.25 Aligned_cols=214 Identities=35% Similarity=0.506 Sum_probs=191.1
Q ss_pred CCcCChHHhhHHHHHcCccc----cCccCC--CCCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCC
Q psy9004 3 TNGFGTPEQLKYLVDECHKA----GLFGTP--EQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASK 75 (237)
Q Consensus 3 ~~~~Gl~~~L~yl~~lGv~~----pi~~~~--~~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~ 75 (237)
|.+++.+++|+||++||+|+ ||-.-| .+|||+++.||++ ++|||+++||+||++||++||.||||+|+||.++
T Consensus 162 ~~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD~V~~HF~~ 241 (628)
T COG0296 162 GYFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILDWVPNHFPP 241 (628)
T ss_pred CHHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCEEEEEecCCcCCC
Confidence 56788999999999999997 777666 6999999999999 9999999999999999999999999999999999
Q ss_pred CccccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccCccccccCCCCCCCC
Q psy9004 76 NVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFS 155 (237)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~~l~~~~~~~~~~~~ 155 (237)
+ ...+..++++..+.+.+...+..+.|+....|+.+++||++|++++.+|+++|+|||+|+||+.+|.+.+..+.+.
T Consensus 242 d-~~~L~~fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal~Wl~~yHiDGlRvDAV~smly~d~~~~~~-- 318 (628)
T COG0296 242 D-GNYLARFDGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANALYWLEEYHIDGLRVDAVASMLYLDYSRAEG-- 318 (628)
T ss_pred C-cchhhhcCCccccccCCcccccCCCcccchhccCcHHHHHHHHHHHHHHHHHhCCcceeeehhhhhhccchhhhhh--
Confidence 6 4667778887766666666788999999999999999999999999999999999999999999998887543321
Q ss_pred CCcccccCccCChhHHHHHHHHHHHHHhhCCCeEEEEecCCCCCCcccccccCCccccccccCC
Q psy9004 156 GHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGRP 219 (237)
Q Consensus 156 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~i~E~~~~~~~~~~~~~~~~~gfd~~~~~~ 219 (237)
.-..+..|+.++.++.+|++..++.++...|+.+.|+|+|..++..+.+...+|+||+|.+|||
T Consensus 319 ~~~~n~~ggr~n~~a~efl~~~n~~i~~~~pg~~~iaeestd~~~~t~~~~~gG~gf~yk~nmg 382 (628)
T COG0296 319 EWVPNEYGGRENLEAAEFLRNLNSLIHEEEPGAMTIAEESTDDPHVTLPVAIGGLGFGYKWNMG 382 (628)
T ss_pred cccccccCCcccHHHHHHhhhhhhhhcccCCCceeeeeeccCCCCceeeecccccchhhhhhhh
Confidence 1123455677788999999999999999999999999999999999999999999999999998
No 12
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=100.00 E-value=1.3e-38 Score=296.63 Aligned_cols=188 Identities=31% Similarity=0.408 Sum_probs=158.1
Q ss_pred CCCcCChHHhhHHHHHcCccc----cCccCC--CCCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccC
Q psy9004 2 RTNGFGTPEQLKYLVDECHKA----GLFGTP--EQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 74 (237)
Q Consensus 2 ~~~~~Gl~~~L~yl~~lGv~~----pi~~~~--~~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~ 74 (237)
+|+|+||+++|+||++|||++ ||+..+ .+|||++.+|++| ++|||+++||+||++||++||+||||+|+||++
T Consensus 107 ~G~~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~V~NH~~ 186 (542)
T TIGR02402 107 EGTFDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDVVYNHFG 186 (542)
T ss_pred CCCHHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccccCCHHHHHHHHHHHHHCCCEEEEEEccCCCC
Confidence 589999999999999999987 887665 6899999999999 999999999999999999999999999999999
Q ss_pred CCccccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCH---HHHHHHHHHHHHHHHhCCCcEEEecccCccccccCCCC
Q psy9004 75 KNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEI---EVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCG 151 (237)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p---~v~~~i~~~~~~w~~~~giDGfR~D~~~~l~~~~~~~~ 151 (237)
.+... +.. ..+ ||... ..+.|+. .+|+++| +||++|++++++|+++|||||||||++.+|.
T Consensus 187 ~~~~~-~~~---~~~-y~~~~---~~~~wg~-~~n~~~~~~~~vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~------- 250 (542)
T TIGR02402 187 PEGNY-LPR---YAP-YFTDR---YSTPWGA-AINFDGPGSDEVRRYILDNALYWLREYHFDGLRLDAVHAIA------- 250 (542)
T ss_pred Ccccc-ccc---cCc-cccCC---CCCCCCC-ccccCCCcHHHHHHHHHHHHHHHHHHhCCcEEEEeCHHHhc-------
Confidence 76321 111 223 55432 2345654 6999999 9999999999999999999999999998872
Q ss_pred CCCCCCcccccCccCChhHHHHHHHHHHHHHhhCCC---eEEEEecCCCCCCcccccccCCccccccccCCc
Q psy9004 152 EGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPE---IITIAEDVSGMPASCRPVTEGGTGFDYRLGRPG 220 (237)
Q Consensus 152 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~---~~~i~E~~~~~~~~~~~~~~~~~gfd~~~~~~~ 220 (237)
+.....||+++++.++++.|+ +++|||.+...+..+.+...++++||+.|+..|
T Consensus 251 ---------------~~~~~~~l~~~~~~~~~~~p~~~~~~li~E~~~~~~~~~~~~~~~~~~~d~~~~~~~ 307 (542)
T TIGR02402 251 ---------------DTSAKHILEELAREVHELAAELRPVHLIAESDLNDPSLVTPREDGGYGLDAQWNDDF 307 (542)
T ss_pred ---------------cccHHHHHHHHHHHHHHHCCCCceEEEEEecCCCCCcccccccCCccceEEEECchH
Confidence 112468999999999999999 999999998777777666667889999888654
No 13
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=100.00 E-value=1.8e-39 Score=281.03 Aligned_cols=171 Identities=28% Similarity=0.391 Sum_probs=140.4
Q ss_pred CCcCChHHhhHHHHHcCccc----cCccCC-CCCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCC
Q psy9004 3 TNGFGTPEQLKYLVDECHKA----GLFGTP-EQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN 76 (237)
Q Consensus 3 ~~~~Gl~~~L~yl~~lGv~~----pi~~~~-~~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~ 76 (237)
|||+||++||+||++|||++ ||++++ .+|||+|.||++| |+|||+++|++||++||++||+||+|+|+||++.+
T Consensus 1 Gd~~gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~~~ 80 (316)
T PF00128_consen 1 GDFRGIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNHTSDD 80 (316)
T ss_dssp SSHHHHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEETT
T ss_pred CCHHHHHHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeeccccccc
Confidence 79999999999999999986 999988 8999999999999 99999999999999999999999999999999999
Q ss_pred ccccc---cCCCCCCCCccCCC-----CC------CCCCCC-------------CCCCCCCCCHHHHHHHHHHHHHHHHh
Q psy9004 77 VLDGL---NEFDGTQACFFHDG-----PR------GTHPLW-------------DSRLFNYSEIEVLRFLLSNLRWYLEE 129 (237)
Q Consensus 77 ~~~~~---~~~~~~~~~~~~~~-----~~------~~~~~~-------------~~~~ln~~~p~v~~~i~~~~~~w~~~ 129 (237)
+.+.. .......+.|+... +. .....| ..++||+.||+||++|++++++|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~i~~~~~~w~~- 159 (316)
T PF00128_consen 81 HPWFQDSLNYFDNPYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVREYIIDVLKFWIE- 159 (316)
T ss_dssp SHHHHHHHTHTTSTTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTTSEEBETTSHHHHHHHHHHHHHHHH-
T ss_pred cccccccccccccccccceeecccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhcccccchhh-
Confidence 76532 11111122332210 00 001111 2358999999999999999999999
Q ss_pred CCCcEEEecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhhCCCeEEEEecCCCCCC
Q psy9004 130 YQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPA 200 (237)
Q Consensus 130 ~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~i~E~~~~~~~ 200 (237)
.||||||+|+++++ ...+|++++.++++..|+++++||.+.....
T Consensus 160 ~giDGfR~D~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~i~E~~~~~~~ 204 (316)
T PF00128_consen 160 EGIDGFRLDAAKHI--------------------------PKEFWKEFRDEVKEEKPDFFLIGEVWGGDNE 204 (316)
T ss_dssp TTESEEEETTGGGS--------------------------SHHHHHHHHHHHHHHHTTSEEEEEESSSSHH
T ss_pred ceEeEEEEcccccc--------------------------chhhHHHHhhhhhhhccccceeeeeccCCcc
Confidence 68999999999988 3489999999999998999999999988754
No 14
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=100.00 E-value=2.3e-38 Score=295.56 Aligned_cols=203 Identities=23% Similarity=0.296 Sum_probs=152.5
Q ss_pred CCCcCChHHhhHHHHHcCccc----cCccCCC-CCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCC
Q psy9004 2 RTNGFGTPEQLKYLVDECHKA----GLFGTPE-QLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASK 75 (237)
Q Consensus 2 ~~~~~Gl~~~L~yl~~lGv~~----pi~~~~~-~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~ 75 (237)
+|||+||+++|+||++|||++ |+++++. +|||++.||++| |+|||+++|++||++||++||+||+|+|+||++.
T Consensus 24 ~Gdl~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V~NH~s~ 103 (539)
T TIGR02456 24 IGDFPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLVLNHTSD 103 (539)
T ss_pred ccCHHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEeccCcCCC
Confidence 589999999999999999986 9999886 799999999999 9999999999999999999999999999999999
Q ss_pred CccccccCC---CCCCCCccCCCCC-------------CCCCCC----------------CCCCCCCCCHHHHHHHHHHH
Q psy9004 76 NVLDGLNEF---DGTQACFFHDGPR-------------GTHPLW----------------DSRLFNYSEIEVLRFLLSNL 123 (237)
Q Consensus 76 ~~~~~~~~~---~~~~~~~~~~~~~-------------~~~~~~----------------~~~~ln~~~p~v~~~i~~~~ 123 (237)
+++++.... ++..+.||..... .....| ..++||++||+||++|.+++
T Consensus 104 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdln~~np~vr~~l~~~~ 183 (539)
T TIGR02456 104 QHPWFQEARSNPDGPYRDFYVWSDTDEKYKDTRIIFVDTEKSNWTFDPVAKQYYWHRFFSHQPDLNYDNPAVHDAVHDVM 183 (539)
T ss_pred CCHHHHHHhhCCCCCCCceEEecCCCcccccccccccccCCCCccccCCcCeeEEecccCCCCccCCCCHHHHHHHHHHH
Confidence 876543221 1222234422110 011223 13589999999999999999
Q ss_pred HHHHHhCCCcEEEecccCccccccCCCCCCCCCCcccccCccCC-hhHHHHHHHHHHHHHhhCCCeEEEEecCCCCCCcc
Q psy9004 124 RWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVD-TDALIYLMVANKFLHDKYPEIITIAEDVSGMPASC 202 (237)
Q Consensus 124 ~~w~~~~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~p~~~~i~E~~~~~~~~~ 202 (237)
++|++ +||||||||+++++.+... +...+ ++..+||+++++.+++.+|++++|||.+.......
T Consensus 184 ~~w~~-~GvDGfRlDav~~~~~~~~--------------~~~~~~p~~~~f~~~~~~~v~~~~p~~~~iaE~~~~~~~~~ 248 (539)
T TIGR02456 184 RFWLD-LGVDGFRLDAVPYLYEREG--------------TSCENLPETHEFLKRLRKMVDREYPGRMLLAEANQWPEEVV 248 (539)
T ss_pred HHHHH-cCCCEEEEecHHhhhccCC--------------CccCCCchHHHHHHHHHHHHHHhCCCeEEEEEeCCCHHHHH
Confidence 99998 8999999999998843211 01111 34578999999999999999999999854333333
Q ss_pred ccccc-CCccccccccCC
Q psy9004 203 RPVTE-GGTGFDYRLGRP 219 (237)
Q Consensus 203 ~~~~~-~~~gfd~~~~~~ 219 (237)
.++.. ...++|+.|++.
T Consensus 249 ~y~~~~~~~~~d~~f~f~ 266 (539)
T TIGR02456 249 AYFGDEGDPECHMAFNFP 266 (539)
T ss_pred HhhCCCCCCeeeeEEChh
Confidence 33322 122555555543
No 15
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=100.00 E-value=4.8e-37 Score=283.18 Aligned_cols=188 Identities=22% Similarity=0.292 Sum_probs=142.2
Q ss_pred cCChHHhhHHHHHcCccc----cCccCCC---CCCCCccccc---------cc-CCCCCHHHHHHHHHHHHHcCCEEEEE
Q psy9004 5 GFGTPEQLKYLVDECHKA----GLFGTPE---QLKYLVDECH---------KA-GLFGTPEQLKYLVDECHKAGLYVLLD 67 (237)
Q Consensus 5 ~~Gl~~~L~yl~~lGv~~----pi~~~~~---~~gY~~~d~~---------~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD 67 (237)
++||++||+||++|||++ |++.+++ +|||++.||+ .| |+|||+++|++||++||++||+||+|
T Consensus 21 ~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi~D 100 (479)
T PRK09441 21 WNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYAD 100 (479)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEEEE
Confidence 469999999999999987 8888764 6999999999 79 99999999999999999999999999
Q ss_pred eeccccCCCcc-cccc-----------------------CC--CCC---C----CCccCCCCC---------------CC
Q psy9004 68 VVHSHASKNVL-DGLN-----------------------EF--DGT---Q----ACFFHDGPR---------------GT 99 (237)
Q Consensus 68 ~v~nh~~~~~~-~~~~-----------------------~~--~~~---~----~~~~~~~~~---------------~~ 99 (237)
+|+||++..+. .++. .+ .+. . ..|+...+. ..
T Consensus 101 ~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (479)
T PRK09441 101 VVLNHKAGADEKETFRVVEVDPDDRTQIISEPYEIEGWTRFTFPGRGGKYSDFKWHWYHFSGTDYDENPDESGIFKIVGD 180 (479)
T ss_pred ECcccccCCCcceeeeeeeeCccccccccCCceeecccccccCCCCCCcCCcceeCCcCCCCcccccccCcCceEEecCC
Confidence 99999996422 1110 00 000 0 012111100 00
Q ss_pred CCCCC--------------CCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccCccccccCCCCCCCCCCcccccCcc
Q psy9004 100 HPLWD--------------SRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLN 165 (237)
Q Consensus 100 ~~~~~--------------~~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~ 165 (237)
...|. .++||++||+|+++|++++++|++++||||||+|+|+||
T Consensus 181 ~~~w~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~~w~~~~giDGfRlDavk~v---------------------- 238 (479)
T PRK09441 181 GKGWDDQVDDENGNFDYLMGADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVKHI---------------------- 238 (479)
T ss_pred CCCCccccccccCCcccccccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCC----------------------
Confidence 12232 359999999999999999999999899999999999999
Q ss_pred CChhHHHHHHHHHHHHHhhC-CCeEEEEecCCCCCCccccccc----CCccccccccC
Q psy9004 166 VDTDALIYLMVANKFLHDKY-PEIITIAEDVSGMPASCRPVTE----GGTGFDYRLGR 218 (237)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~-p~~~~i~E~~~~~~~~~~~~~~----~~~gfd~~~~~ 218 (237)
+..||+++++++++.. |+++++||.|...+..+..+.. ....||+.++.
T Consensus 239 ----~~~f~~~~~~~~~~~~~~~~~~vGE~~~~~~~~~~~y~~~~~~~~~~~Df~~~~ 292 (479)
T PRK09441 239 ----DAWFIKEWIEHVREVAGKDLFIVGEYWSHDVDKLQDYLEQVEGKTDLFDVPLHY 292 (479)
T ss_pred ----CHHHHHHHHHHHHHhcCCCeEEEEeecCCChHHHHHHHHhcCCCceEecHHHHH
Confidence 3578999999998765 6899999999887654443322 12467776553
No 16
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=100.00 E-value=7.5e-37 Score=285.26 Aligned_cols=211 Identities=20% Similarity=0.249 Sum_probs=152.6
Q ss_pred CCCcCChHHhhHHHHHcCccc----cCccCCC-CCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCC
Q psy9004 2 RTNGFGTPEQLKYLVDECHKA----GLFGTPE-QLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASK 75 (237)
Q Consensus 2 ~~~~~Gl~~~L~yl~~lGv~~----pi~~~~~-~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~ 75 (237)
.||++||+++|+||++|||++ ||++++. .+||++.||+.| |+|||.++|++||++||++||+||+|+|+|||+.
T Consensus 23 ~G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v~NH~~~ 102 (543)
T TIGR02403 23 TGDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMVFNHTST 102 (543)
T ss_pred ccCHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEECcccccc
Confidence 489999999999999999886 9999886 479999999999 9999999999999999999999999999999999
Q ss_pred CccccccCCCC--CCCCccCCCC-CC-CC---------CCC----------------CCCCCCCCCHHHHHHHHHHHHHH
Q psy9004 76 NVLDGLNEFDG--TQACFFHDGP-RG-TH---------PLW----------------DSRLFNYSEIEVLRFLLSNLRWY 126 (237)
Q Consensus 76 ~~~~~~~~~~~--~~~~~~~~~~-~~-~~---------~~~----------------~~~~ln~~~p~v~~~i~~~~~~w 126 (237)
+|+++.....+ ....||.... .+ .. +.| ..++||++||+|+++|.+++++|
T Consensus 103 ~~~~f~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdln~~np~v~~~i~~~~~~W 182 (543)
T TIGR02403 103 EHEWFKKALAGDSPYRDFYIWRDPKGKPPTNWQSKFGGSAWEYFGDTGQYYLHLFDKTQADLNWENPEVREELKDVVNFW 182 (543)
T ss_pred chHHHHHhhcCCCcccCceEecCCCCCCCCcccccCCCcCccccCCCCceEEeccCCcCCccCCCCHHHHHHHHHHHHHH
Confidence 88655432212 1123332110 00 00 112 13589999999999999999999
Q ss_pred HHhCCCcEEEecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhhCCCeEEEEecCCCCCCcccccc
Q psy9004 127 LEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVT 206 (237)
Q Consensus 127 ~~~~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~i~E~~~~~~~~~~~~~ 206 (237)
++ .||||||||+|++|.+.. ..++..... ...+. ...+...+||+++++.+++ .|++++|||.+...+..+..+.
T Consensus 183 ~~-~giDGfRlDa~~~i~~~~-~~~~~~~~~-~~~~~-~~~~~~~~f~~~~~~~~~~-~~~~~lvgE~~~~~~~~~~~y~ 257 (543)
T TIGR02403 183 RD-KGVDGFRLDVINLISKDQ-FFEDDEIGD-GRRFY-TDGPRVHEYLQEMNQEVFG-DNDSVTVGEMSSTTIENCIRYS 257 (543)
T ss_pred HH-cCCCEEEEeeehhhccCc-ccCCCCCCC-Ccccc-CCChHHHHHHHHHHHHhhc-cCCeEEEEEeCCCCHHHHHhhh
Confidence 98 799999999999984321 111100000 00000 0124578999999999988 8999999999976554433332
Q ss_pred -cCCcccccccc
Q psy9004 207 -EGGTGFDYRLG 217 (237)
Q Consensus 207 -~~~~gfd~~~~ 217 (237)
..+..||+.+|
T Consensus 258 ~~~~~~~d~~~n 269 (543)
T TIGR02403 258 NPENKELSMVFT 269 (543)
T ss_pred CCCCCeeCeEEC
Confidence 22334665554
No 17
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=100.00 E-value=1.2e-35 Score=277.12 Aligned_cols=197 Identities=18% Similarity=0.269 Sum_probs=144.1
Q ss_pred CCCcCChHHhhHHHHHcCccc----cCccCCC-CCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCC
Q psy9004 2 RTNGFGTPEQLKYLVDECHKA----GLFGTPE-QLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASK 75 (237)
Q Consensus 2 ~~~~~Gl~~~L~yl~~lGv~~----pi~~~~~-~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~ 75 (237)
.||++||+++|+||++|||++ |++.+|. .|||++.||+.| |+|||+++|++||++||++||+||+|+|+||++.
T Consensus 29 ~Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V~NH~s~ 108 (551)
T PRK10933 29 TGDLRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMVFNHTST 108 (551)
T ss_pred CcCHHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCccC
Confidence 589999999999999999986 8888885 699999999999 9999999999999999999999999999999999
Q ss_pred CccccccCCCCCCC--CccCCCC--CC-CC---------CC--C--------------CCCCCCCCCHHHHHHHHHHHHH
Q psy9004 76 NVLDGLNEFDGTQA--CFFHDGP--RG-TH---------PL--W--------------DSRLFNYSEIEVLRFLLSNLRW 125 (237)
Q Consensus 76 ~~~~~~~~~~~~~~--~~~~~~~--~~-~~---------~~--~--------------~~~~ln~~~p~v~~~i~~~~~~ 125 (237)
+|+++........+ .||.... .+ .. +. | ..++||++||+|+++|++++++
T Consensus 109 ~~~wf~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdLn~~np~V~~~l~~~~~~ 188 (551)
T PRK10933 109 QHAWFREALNKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYYLHLFAPEQADLNWENPAVRAELKKVCEF 188 (551)
T ss_pred chhHHHhhcCCCCCCcCceEecCCCCCCCCCcccccCCCccccccCCCCceEeecccccCCccCCCCHHHHHHHHHHHHH
Confidence 98765443222111 2332110 00 00 01 1 1359999999999999999999
Q ss_pred HHHhCCCcEEEecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhhCCCeEEEEecCCCCCCccc
Q psy9004 126 YLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCR 203 (237)
Q Consensus 126 w~~~~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~i~E~~~~~~~~~~ 203 (237)
|++ +||||||+|+|+++.+.. +.++.........+ ...++.++||+++++.+.+ .+++++|||.+......+.
T Consensus 189 W~~-~GvDGfRlDa~~~i~~~~-~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~-~~~~~~vgE~~~~~~~~~~ 261 (551)
T PRK10933 189 WAD-RGVDGLRLDVVNLISKDQ-DFPDDLDGDGRRFY--TDGPRAHEFLQEMNRDVFT-PRGLMTVGEMSSTSLEHCQ 261 (551)
T ss_pred HHH-CCCcEEEEcchhhcCcCC-CCCCCccccccccc--CCChHHHHHHHHHHHHhhc-ccCcEEEEeecCCCHHHHH
Confidence 997 899999999999995431 11110000011111 0124678899999876643 3478999999876544433
No 18
>PRK09505 malS alpha-amylase; Reviewed
Probab=100.00 E-value=7.5e-36 Score=282.22 Aligned_cols=190 Identities=21% Similarity=0.220 Sum_probs=135.8
Q ss_pred CCCcCChHHhhHHHHHcCccc----cCccC---------------CCCCCCCccccccc-CCCCCHHHHHHHHHHHHHcC
Q psy9004 2 RTNGFGTPEQLKYLVDECHKA----GLFGT---------------PEQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAG 61 (237)
Q Consensus 2 ~~~~~Gl~~~L~yl~~lGv~~----pi~~~---------------~~~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~G 61 (237)
+||++||+++|+||++|||++ |++.+ ..+|||++.||+.+ |+|||+++|++||++||++|
T Consensus 226 GGdl~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~G 305 (683)
T PRK09505 226 GGDLRGLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRG 305 (683)
T ss_pred CCCHHHHHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCC
Confidence 699999999999999999986 77754 26899999999999 99999999999999999999
Q ss_pred CEEEEEeeccccCCCcc-----ccccC-C-------CCCCCC---cc-------C-------CC-CCCCCCCC-------
Q psy9004 62 LYVLLDVVHSHASKNVL-----DGLNE-F-------DGTQAC---FF-------H-------DG-PRGTHPLW------- 103 (237)
Q Consensus 62 i~VilD~v~nh~~~~~~-----~~~~~-~-------~~~~~~---~~-------~-------~~-~~~~~~~~------- 103 (237)
|+||+|+|+||++..+. .++.. + ...... |+ + .. .......|
T Consensus 306 i~VilD~V~NH~~~~~~~d~~~~~f~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~wwg~~w~~~ 385 (683)
T PRK09505 306 IRILFDVVMNHTGYATLADMQEFQFGALYLSGDENKKTLGERWSDWQPAAGQNWHSFNDYINFSDSTAWDKWWGKDWIRT 385 (683)
T ss_pred CEEEEEECcCCCcccccccccccchhhhhhhccccccccCcccccccccccccccccccccccCCccccccccccccccc
Confidence 99999999999995321 00000 0 000000 10 0 00 00001111
Q ss_pred ------------------CCCCCCCC-----------------------CHHHHHHHHHHHHHHHHhCCCcEEEecccCc
Q psy9004 104 ------------------DSRLFNYS-----------------------EIEVLRFLLSNLRWYLEEYQFDGFRFDGVTS 142 (237)
Q Consensus 104 ------------------~~~~ln~~-----------------------~p~v~~~i~~~~~~w~~~~giDGfR~D~~~~ 142 (237)
..++||.. ||+|+++|++++++|++++||||||+|+|+|
T Consensus 386 ~~~~~~~~~~~~~~~~l~~LPdl~te~~~~~~lp~f~~~~p~~~~~~~~n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaakh 465 (683)
T PRK09505 386 DIGDYDNPGFDDLTMSLAFLPDIKTESTQASGLPVFYANKPDTRAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKH 465 (683)
T ss_pred cccccccccccccccccccCCcccccCccccccchhhhcCcccccccccCHHHHHHHHHHHHHHHHhcCCCEEEEechHh
Confidence 11244443 6699999999999999999999999999999
Q ss_pred cccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHH-------HhhCC-------CeEEEEecCCCCCCcccccccC
Q psy9004 143 MLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFL-------HDKYP-------EIITIAEDVSGMPASCRPVTEG 208 (237)
Q Consensus 143 l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-------~~~~p-------~~~~i~E~~~~~~~~~~~~~~~ 208 (237)
| +.+||+++++.+ ++.+| ++++|||.|+..+.....+
T Consensus 466 V--------------------------~~~FW~~~~~~~~~~l~~~k~~~~d~~~~~~~~~~vGEvw~~~~~~~~y~--- 516 (683)
T PRK09505 466 V--------------------------ELPAWQQLKQEASAALAEWKKANPDKALDDAPFWMTGEAWGHGVMKSDYY--- 516 (683)
T ss_pred C--------------------------CHHHHHHHHHHHHHHHHHHHHhccccccccCCeEEEEEecCCchhhHHHH---
Confidence 9 346788777666 34444 4899999997655433333
Q ss_pred CccccccccCCc
Q psy9004 209 GTGFDYRLGRPG 220 (237)
Q Consensus 209 ~~gfd~~~~~~~ 220 (237)
+.+||..+|..|
T Consensus 517 ~~~fDsv~NF~~ 528 (683)
T PRK09505 517 RHGFDAMINFDY 528 (683)
T ss_pred hhcCccccCchH
Confidence 246777666543
No 19
>KOG0470|consensus
Probab=100.00 E-value=3e-36 Score=277.90 Aligned_cols=224 Identities=54% Similarity=0.862 Sum_probs=204.4
Q ss_pred CCcCChHHh-hHHHHHcCccc----cCccCC---CCCCCCccccccc-CCCCCHH------HHHHHHHHHHHcCCEEEEE
Q psy9004 3 TNGFGTPEQ-LKYLVDECHKA----GLFGTP---EQLKYLVDECHKA-GLFGTPE------QLKYLVDECHKAGLYVLLD 67 (237)
Q Consensus 3 ~~~~Gl~~~-L~yl~~lGv~~----pi~~~~---~~~gY~~~d~~~v-~~~Gt~~------~l~~lv~~~H~~Gi~VilD 67 (237)
|.++|.++| |++||+||.++ ||+.-. ..|||.|++|+++ .+|||++ +||.||++||+.||-|+||
T Consensus 251 ~gY~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLD 330 (757)
T KOG0470|consen 251 GGYLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLD 330 (757)
T ss_pred cchhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehh
Confidence 348999999 99999999987 777662 5899999999999 9999999 9999999999999999999
Q ss_pred eeccccCCCccccccCCCCCC-CCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccCccccc
Q psy9004 68 VVHSHASKNVLDGLNEFDGTQ-ACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYH 146 (237)
Q Consensus 68 ~v~nh~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~~l~~~ 146 (237)
||.||++.+....++.++|.+ ..||+.++.+.+..|++..+|+++|+|+++|++.+++|++||+|||||||.+.+|.+.
T Consensus 331 VV~sHaa~n~~d~l~~fdGid~~~Yf~~~~r~~h~~~~~r~fn~~~~~V~rflL~nLr~WVtEY~vDGFRFD~~ssm~~~ 410 (757)
T KOG0470|consen 331 VVHSHAAKNSKDGLNMFDGIDNSVYFHSGPRGYHNSWCSRLFNYNHPVVLRFLLSNLRWWVTEYHVDGFRFDLVSSMLYT 410 (757)
T ss_pred hhhhhcccCcCCcchhccCcCCceEEEeCCcccccccccccccCCCHHHHHHHHHHHHHHHHheeccceEEcchhhhhhh
Confidence 999999998778888899998 6789988888999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCcccccCcc---CChhHHHHHHHHHHHHHhhCCCeEEEEecCCCCCCc-ccccccCCcccc--ccccCCc
Q psy9004 147 NHGCGEGFSGHYDEYFGLN---VDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPAS-CRPVTEGGTGFD--YRLGRPG 220 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~p~~~~i~E~~~~~~~~-~~~~~~~~~gfd--~~~~~~~ 220 (237)
.++..+++++++.+.+|.. .+.++...+.-+++.+....|..+.++|..++.+.. |.|..+++.||| |..+|.-
T Consensus 411 ~~g~~~~f~gd~~~y~g~~g~~~d~~~l~~lmlAnd~~l~~~~~~It~~~D~~gm~~~~~~P~~~g~~~~d~~yr~~~~~ 490 (757)
T KOG0470|consen 411 HHGNAAGFDGDYIEYFGTDGSFVDVDALVYLMLANDPLLGGTPGLITDAEDVSGMPGLGCFPVWQGGAGFDGLYRLAVRL 490 (757)
T ss_pred ccccccccCCcchhhhccCCCcccccHHHHHHhhcchhhhcCCcceEeeeccccCCCcCCccccccccccchhhhHHhhh
Confidence 9998899999999988765 666777777788888999999999999999999998 999999999999 8888877
Q ss_pred cccccc
Q psy9004 221 LDKSFY 226 (237)
Q Consensus 221 ~~~~~~ 226 (237)
+.+|.+
T Consensus 491 ~~k~~~ 496 (757)
T KOG0470|consen 491 FDKWIQ 496 (757)
T ss_pred HHHHHH
Confidence 777744
No 20
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=100.00 E-value=1.1e-35 Score=282.70 Aligned_cols=204 Identities=22% Similarity=0.249 Sum_probs=151.8
Q ss_pred CCCCcCChHHh--hHHHHHcCccc----cCccCC-----------CCCCCCccccccc-CCC---CCHHHHHHHHHHHHH
Q psy9004 1 MRTNGFGTPEQ--LKYLVDECHKA----GLFGTP-----------EQLKYLVDECHKA-GLF---GTPEQLKYLVDECHK 59 (237)
Q Consensus 1 ~~~~~~Gl~~~--L~yl~~lGv~~----pi~~~~-----------~~~gY~~~d~~~v-~~~---Gt~~~l~~lv~~~H~ 59 (237)
.+|+|+||+++ |+||++|||++ ||+..+ .+|||+|.||++| ++| |+.++||+||++||+
T Consensus 177 ~~Gtf~Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~ 256 (688)
T TIGR02100 177 LRGTYAGLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHD 256 (688)
T ss_pred cccCHHHHhccchhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHH
Confidence 37999999995 99999999987 888664 3699999999999 999 678999999999999
Q ss_pred cCCEEEEEeeccccCCCccccc-cCCCCCC-CCccCCCCC--CCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHhCCCc
Q psy9004 60 AGLYVLLDVVHSHASKNVLDGL-NEFDGTQ-ACFFHDGPR--GTHPLW--DSRLFNYSEIEVLRFLLSNLRWYLEEYQFD 133 (237)
Q Consensus 60 ~Gi~VilD~v~nh~~~~~~~~~-~~~~~~~-~~~~~~~~~--~~~~~~--~~~~ln~~~p~v~~~i~~~~~~w~~~~giD 133 (237)
+||+||||+|+|||+..+.... ..+.+.. ..||..... +....| ...++|+++|+||++|++++++|++++|||
T Consensus 257 ~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~i~d~l~~W~~e~gID 336 (688)
T TIGR02100 257 AGIEVILDVVYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQMVMDSLRYWVTEMHVD 336 (688)
T ss_pred CCCEEEEEECcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHHHHHHHHHHHHHcCCc
Confidence 9999999999999998753221 1222222 345543322 211122 135799999999999999999999999999
Q ss_pred EEEecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhhCCCeEEEEecCCCCCCcccccccCCcccc
Q psy9004 134 GFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFD 213 (237)
Q Consensus 134 GfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~i~E~~~~~~~~~~~~~~~~~gfd 213 (237)
|||||++..|..... .+ .....|+++++.. ...|++++|||.|...+. +
T Consensus 337 GfR~D~a~~l~~~~~--------~~---------~~~~~~~~~i~~d--~~~~~~~ligE~W~~~~~--------~---- 385 (688)
T TIGR02100 337 GFRFDLATTLGRELY--------GF---------DMLSGFFTAIRQD--PVLAQVKLIAEPWDIGPG--------G---- 385 (688)
T ss_pred EEEEechhhhccccC--------CC---------cccHHHHHHHHhC--cccCCeEEEEeeecCCCC--------c----
Confidence 999999998832200 00 1124567777642 467899999999864321 1
Q ss_pred ccccCCcccccccccceeeeeee
Q psy9004 214 YRLGRPGLDKSFYGNASLGLEIR 236 (237)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~ 236 (237)
+.. ..|+..|.+||+.|+..||
T Consensus 386 ~~~-~~~~~~~~~~Nd~frd~ir 407 (688)
T TIGR02100 386 YQV-GNFPPGWAEWNDRYRDDMR 407 (688)
T ss_pred ccc-cCCCCceEEecHHHHHHHH
Confidence 111 2677789999999987775
No 21
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=100.00 E-value=7.2e-35 Score=275.14 Aligned_cols=167 Identities=21% Similarity=0.292 Sum_probs=135.0
Q ss_pred cCChHHhhHHHHHcCccc----cCccCCC----------CCCCCccccccc-CCCCC--------HHHHHHHHHHHHHcC
Q psy9004 5 GFGTPEQLKYLVDECHKA----GLFGTPE----------QLKYLVDECHKA-GLFGT--------PEQLKYLVDECHKAG 61 (237)
Q Consensus 5 ~~Gl~~~L~yl~~lGv~~----pi~~~~~----------~~gY~~~d~~~v-~~~Gt--------~~~l~~lv~~~H~~G 61 (237)
+.|++++|+||++|||++ ||+..++ +|||++.+|+++ ++||+ .++||+||++||++|
T Consensus 163 ~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~G 242 (605)
T TIGR02104 163 PNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENG 242 (605)
T ss_pred cccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCC
Confidence 445556699999999987 8887653 599999999999 99997 489999999999999
Q ss_pred CEEEEEeeccccCCCccccccCCCCCCCCccCC-CCCCCCC-CCC-CCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEec
Q psy9004 62 LYVLLDVVHSHASKNVLDGLNEFDGTQACFFHD-GPRGTHP-LWD-SRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 138 (237)
Q Consensus 62 i~VilD~v~nh~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~-~~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D 138 (237)
|+||||+|+||++.... ..+++..+.||.. ...+... .++ ..++|+.+|+||++|++++++|++++||||||+|
T Consensus 243 i~VilDvV~NH~~~~~~---~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e~~iDGfR~D 319 (605)
T TIGR02104 243 IRVIMDVVYNHTYSREE---SPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVKEYNIDGFRFD 319 (605)
T ss_pred CEEEEEEEcCCccCCCC---CcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 99999999999985421 2344444544432 2222221 111 3479999999999999999999999999999999
Q ss_pred ccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhhCCCeEEEEecCCCCCC
Q psy9004 139 GVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPA 200 (237)
Q Consensus 139 ~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~i~E~~~~~~~ 200 (237)
++.++ ..+||+++++++++..|++++|||.|+..+.
T Consensus 320 ~~~~~--------------------------~~~~~~~~~~~~~~~~p~~~ligE~w~~~~~ 355 (605)
T TIGR02104 320 LMGIH--------------------------DIETMNEIRKALNKIDPNILLYGEGWDLGTP 355 (605)
T ss_pred chhcC--------------------------CHHHHHHHHHHHHhhCCCeEEEEccCCCCCC
Confidence 99876 3568999999999999999999999977644
No 22
>PRK03705 glycogen debranching enzyme; Provisional
Probab=100.00 E-value=2.2e-35 Score=278.91 Aligned_cols=203 Identities=21% Similarity=0.267 Sum_probs=148.5
Q ss_pred CCCCcCChHH--hhHHHHHcCccc----cCccCC-----------CCCCCCccccccc-CCCCCH-----HHHHHHHHHH
Q psy9004 1 MRTNGFGTPE--QLKYLVDECHKA----GLFGTP-----------EQLKYLVDECHKA-GLFGTP-----EQLKYLVDEC 57 (237)
Q Consensus 1 ~~~~~~Gl~~--~L~yl~~lGv~~----pi~~~~-----------~~~gY~~~d~~~v-~~~Gt~-----~~l~~lv~~~ 57 (237)
++|+|.|+++ +|+||++|||++ ||+..+ .+|||+|.||+++ ++|||. ++||+||++|
T Consensus 172 ~~Gtf~g~~~~~~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~ 251 (658)
T PRK03705 172 IRGTYAALGHPVMIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKAL 251 (658)
T ss_pred ccccHHHhhcccchHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHH
Confidence 3688999997 599999999987 888653 4799999999999 999985 7999999999
Q ss_pred HHcCCEEEEEeeccccCCCccccc-cCCCCCC-CCccCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHhCCCc
Q psy9004 58 HKAGLYVLLDVVHSHASKNVLDGL-NEFDGTQ-ACFFHDGPRGTHPLWDS--RLFNYSEIEVLRFLLSNLRWYLEEYQFD 133 (237)
Q Consensus 58 H~~Gi~VilD~v~nh~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~--~~ln~~~p~v~~~i~~~~~~w~~~~giD 133 (237)
|++||+||||+|+|||+....... ..+++.. +.||.....+....|.. +++|+++|+|+++|++++++|+++||||
T Consensus 252 H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid~l~~W~~e~gVD 331 (658)
T PRK03705 252 HKAGIEVILDVVFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAIDCLRYWVETCHVD 331 (658)
T ss_pred HHCCCEEEEEEcccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999997432111 1122222 34443333344444543 5899999999999999999999999999
Q ss_pred EEEecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhhCCCeEEEEecCCCCCCcccccccCCcccc
Q psy9004 134 GFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFD 213 (237)
Q Consensus 134 GfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~i~E~~~~~~~~~~~~~~~~~gfd 213 (237)
|||||++.+|... .++ . ....+++.++. ..+.|++.++||.|...+..
T Consensus 332 GFRfD~a~~l~~~---------~~~--------~-~~~~~~~ai~~--d~vl~~~~ligE~Wd~~~~~------------ 379 (658)
T PRK03705 332 GFRFDLATVLGRT---------PEF--------R-QDAPLFTAIQN--DPVLSQVKLIAEPWDIGPGG------------ 379 (658)
T ss_pred EEEEEcHhhhCcC---------ccc--------c-hhhHHHHHHhh--CccccceEEEEecccCCCCh------------
Confidence 9999999988321 001 0 01224444432 23668999999999653210
Q ss_pred ccccCCcccccccccceeeeeee
Q psy9004 214 YRLGRPGLDKSFYGNASLGLEIR 236 (237)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~ 236 (237)
++.+ .|+..|.+||+.|+..||
T Consensus 380 ~~~g-~~~~~~~~~Nd~fRd~ir 401 (658)
T PRK03705 380 YQVG-NFPPPFAEWNDHFRDAAR 401 (658)
T ss_pred hhhc-CCCcceEEEchHHHHHHH
Confidence 1112 566789999999987765
No 23
>PLN00196 alpha-amylase; Provisional
Probab=100.00 E-value=2.2e-34 Score=260.47 Aligned_cols=166 Identities=18% Similarity=0.189 Sum_probs=129.3
Q ss_pred CCCcCChHHhhHHHHHcCccc----cCccCCCCCCCCccccccc-C-CCCCHHHHHHHHHHHHHcCCEEEEEeeccccCC
Q psy9004 2 RTNGFGTPEQLKYLVDECHKA----GLFGTPEQLKYLVDECHKA-G-LFGTPEQLKYLVDECHKAGLYVLLDVVHSHASK 75 (237)
Q Consensus 2 ~~~~~Gl~~~L~yl~~lGv~~----pi~~~~~~~gY~~~d~~~v-~-~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~ 75 (237)
+|+++||++||+||++|||++ |++.+.++|||++.||+++ + +|||.++|++||++||++||+||+|+|+||++.
T Consensus 40 gg~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH~~~ 119 (428)
T PLN00196 40 GGWYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRTA 119 (428)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccCccc
Confidence 467899999999999999987 8888889999999999999 6 999999999999999999999999999999998
Q ss_pred CccccccC---CCC----CCCCccCCC--------CCC--CC-C---CCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcE
Q psy9004 76 NVLDGLNE---FDG----TQACFFHDG--------PRG--TH-P---LWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDG 134 (237)
Q Consensus 76 ~~~~~~~~---~~~----~~~~~~~~~--------~~~--~~-~---~~~~~~ln~~~p~v~~~i~~~~~~w~~~~giDG 134 (237)
++...... +.+ ....|+... ..+ .. . ....++||++||+|+++|++++++|++++||||
T Consensus 120 ~~~~~~~~y~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~wl~~~~GiDG 199 (428)
T PLN00196 120 EHKDGRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGADFAAAPDIDHLNKRVQRELIGWLLWLKSDIGFDA 199 (428)
T ss_pred ccccCCCceEECCCCCCCCccccccccCCCCcccccCCCCceeCCCCCCCCCccCCCCHHHHHHHHHHHHHHhhCCCCCE
Confidence 75432110 111 112333210 000 00 1 113469999999999999999998887899999
Q ss_pred EEecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhhCCCeEEEEecCCC
Q psy9004 135 FRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSG 197 (237)
Q Consensus 135 fR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~i~E~~~~ 197 (237)
||+|+|+|+ +..|++++ +++..| .++|||.|..
T Consensus 200 ~RlD~ak~~--------------------------~~~f~~~~---v~~~~p-~f~VGE~W~~ 232 (428)
T PLN00196 200 WRLDFAKGY--------------------------SAEVAKVY---IDGTEP-SFAVAEIWTS 232 (428)
T ss_pred EEeehhhhC--------------------------CHHHHHHH---HHccCC-cEEEEEEecc
Confidence 999999988 33566654 455666 7899999976
No 24
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=100.00 E-value=9.7e-34 Score=277.52 Aligned_cols=165 Identities=24% Similarity=0.345 Sum_probs=139.2
Q ss_pred CCCcCChHHhhHHHHHcCccc----cCccC--------------------CCCCCCCccccccc-CCCCC--------HH
Q psy9004 2 RTNGFGTPEQLKYLVDECHKA----GLFGT--------------------PEQLKYLVDECHKA-GLFGT--------PE 48 (237)
Q Consensus 2 ~~~~~Gl~~~L~yl~~lGv~~----pi~~~--------------------~~~~gY~~~d~~~v-~~~Gt--------~~ 48 (237)
+|+|+||+++|+||++|||++ |++.. ..+|||+|.+|+.+ ++||+ .+
T Consensus 476 ~Gtf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfape~~Ygtdp~dp~~ri~ 555 (1111)
T TIGR02102 476 FGTFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFALSGMYSEDPKDPELRIA 555 (1111)
T ss_pred CcCHHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCcccccccccCCcCccccHH
Confidence 589999999999999999987 88741 12499999999999 99998 48
Q ss_pred HHHHHHHHHHHcCCEEEEEeeccccCCCccccccCCCCCCCCccCCC-CCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy9004 49 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDG-PRG-THPLWDSRLFNYSEIEVLRFLLSNLRWY 126 (237)
Q Consensus 49 ~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~ln~~~p~v~~~i~~~~~~w 126 (237)
+||+||++||++||+||||||+||++..+ .+++..+.||... ..+ ..+.|+..+++..+|.||++|++++++|
T Consensus 556 EfK~LV~alH~~GI~VILDVVyNHt~~~~-----~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yW 630 (1111)
T TIGR02102 556 EFKNLINEIHKRGMGVILDVVYNHTAKVY-----IFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYL 630 (1111)
T ss_pred HHHHHHHHHHHCCCEEEEecccccccccc-----cccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999863 3555556665432 222 2345667789999999999999999999
Q ss_pred HHhCCCcEEEecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhhCCCeEEEEecCCC
Q psy9004 127 LEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSG 197 (237)
Q Consensus 127 ~~~~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~i~E~~~~ 197 (237)
+++|||||||||.+.++ ...+++.++.++++..|+++++||.|..
T Consensus 631 v~ey~VDGFRfDl~g~~--------------------------d~~~~~~~~~~l~~~dP~~~liGE~W~~ 675 (1111)
T TIGR02102 631 VDEFKVDGFRFDMMGDH--------------------------DAASIEIAYKEAKAINPNIIMIGEGWRT 675 (1111)
T ss_pred HHhcCCcEEEEeccccC--------------------------CHHHHHHHHHHHHHhCcCEEEEEecccc
Confidence 99999999999999765 2357888888999999999999999975
No 25
>PLN02361 alpha-amylase
Probab=100.00 E-value=5.9e-33 Score=248.80 Aligned_cols=163 Identities=15% Similarity=0.177 Sum_probs=126.1
Q ss_pred cCChHHhhHHHHHcCccc----cCccCCCCCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCCccc
Q psy9004 5 GFGTPEQLKYLVDECHKA----GLFGTPEQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLD 79 (237)
Q Consensus 5 ~~Gl~~~L~yl~~lGv~~----pi~~~~~~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~ 79 (237)
.+||+++|+||++|||++ |++.+.++|||+|.||+++ ++|||.++|++||++||++||+||+|+|+||++.....
T Consensus 28 w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH~~g~~~~ 107 (401)
T PLN02361 28 WRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINHRVGTTQG 107 (401)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEccccccCCCCC
Confidence 369999999999999986 8888888999999999999 99999999999999999999999999999999653211
Q ss_pred ---cccCCCCCCCCccCCC----CCC--C----CCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccCccccc
Q psy9004 80 ---GLNEFDGTQACFFHDG----PRG--T----HPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYH 146 (237)
Q Consensus 80 ---~~~~~~~~~~~~~~~~----~~~--~----~~~~~~~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~~l~~~ 146 (237)
....+.+....|-... ..+ . ......++||++||+||+++++++++|++++||||||+|+++|+
T Consensus 108 ~~~~y~~~~g~~~~wd~~~~~~~~~g~~~~~~~~~~~~lpDLd~~np~Vr~~l~~~~~wl~~~~GiDGfRlDavk~~--- 184 (401)
T PLN02361 108 HGGMYNRYDGIPLPWDEHAVTSCTGGLGNRSTGDNFNGVPNIDHTQHFVRKDIIGWLIWLRNDVGFQDFRFDFAKGY--- 184 (401)
T ss_pred CCCCcccCCCCcCCCCccccccccCCCCCccCCCCCccCCccCCCCHHHHHHHHHHHHHHHhcCCCCEEEEeccccC---
Confidence 1112222111111000 000 0 01123479999999999999999987776799999999999999
Q ss_pred cCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhhCCCeEEEEecCCC
Q psy9004 147 NHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSG 197 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~i~E~~~~ 197 (237)
+..||+++.+.+ .| .++|||.|+.
T Consensus 185 -----------------------~~~f~~~~~~~~---~p-~f~VGE~w~~ 208 (401)
T PLN02361 185 -----------------------SAKFVKEYIEAA---KP-LFSVGEYWDS 208 (401)
T ss_pred -----------------------CHHHHHHHHHhh---CC-eEEEEEEecC
Confidence 457888886543 45 8899999976
No 26
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=100.00 E-value=1.9e-32 Score=264.00 Aligned_cols=142 Identities=20% Similarity=0.260 Sum_probs=119.7
Q ss_pred CCCCCccccccc-CCCCC-------HHHHHHHHHHHHHcCCEEEEEeeccccCCCccccccCCCCCCCCccCCCC-CCCC
Q psy9004 30 QLKYLVDECHKA-GLFGT-------PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGP-RGTH 100 (237)
Q Consensus 30 ~~gY~~~d~~~v-~~~Gt-------~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 100 (237)
+|||+|..|+.+ ..|++ ..|||+||++||++||+||||+|+|||+..++.....++...|.||+... .+..
T Consensus 378 NWGYDP~~y~aPegSYatdp~g~~Ri~Efk~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~~ 457 (898)
T TIGR02103 378 NWGYDPFHYTVPEGSYATDPEGPARIKEFREMVQALNKTGLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGGV 457 (898)
T ss_pred CCCCCCcccCCcChhhccCCCCchHHHHHHHHHHHHHHCCCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCCe
Confidence 799999999999 99998 36999999999999999999999999998765444445655666665432 2221
Q ss_pred -CCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHH
Q psy9004 101 -PLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANK 179 (237)
Q Consensus 101 -~~~~~~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 179 (237)
+..+..+++.+||+|+++|++++++|+++|||||||||.++|+ +.++|+++++
T Consensus 458 ~n~~~~~d~a~e~~~Vrk~iiDsl~~W~~ey~VDGFRfDlm~~~--------------------------~~~f~~~~~~ 511 (898)
T TIGR02103 458 ENSTCCSNTATEHRMMAKLIVDSLVVWAKDYKVDGFRFDLMGHH--------------------------PKAQMLAARE 511 (898)
T ss_pred ecCCCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEEechhhC--------------------------CHHHHHHHHH
Confidence 2233457899999999999999999999999999999999988 4689999999
Q ss_pred HHHhhCCCeEEEEecCCC
Q psy9004 180 FLHDKYPEIITIAEDVSG 197 (237)
Q Consensus 180 ~~~~~~p~~~~i~E~~~~ 197 (237)
+++++.|+++++||.|..
T Consensus 512 ~l~~i~pdi~l~GEgW~~ 529 (898)
T TIGR02103 512 AIKALTPEIYFYGEGWDF 529 (898)
T ss_pred HHHHhCCCEEEEecCCCc
Confidence 999999999999999964
No 27
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=100.00 E-value=1.4e-32 Score=274.21 Aligned_cols=198 Identities=22% Similarity=0.232 Sum_probs=149.2
Q ss_pred CCCcCChHHhhH------HHHHcCccc----cCccCC-----------CCCCCCccccccc-CCCC--CHHHHHHHHHHH
Q psy9004 2 RTNGFGTPEQLK------YLVDECHKA----GLFGTP-----------EQLKYLVDECHKA-GLFG--TPEQLKYLVDEC 57 (237)
Q Consensus 2 ~~~~~Gl~~~L~------yl~~lGv~~----pi~~~~-----------~~~gY~~~d~~~v-~~~G--t~~~l~~lv~~~ 57 (237)
+++++|+.++|+ ||++|||++ ||+.++ .+|||++.||+++ |+|| +.++||+||++|
T Consensus 177 gg~~~Gt~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~ 256 (1221)
T PRK14510 177 PGNLRGTFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEA 256 (1221)
T ss_pred CcccCcHHhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHH
Confidence 345566666655 999999987 888654 4689999999999 9999 999999999999
Q ss_pred HHcCCEEEEEeeccccCCCcccccc-CCCC-CCCCccCCCC---CCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHhCC
Q psy9004 58 HKAGLYVLLDVVHSHASKNVLDGLN-EFDG-TQACFFHDGP---RGTHPLWDS-RLFNYSEIEVLRFLLSNLRWYLEEYQ 131 (237)
Q Consensus 58 H~~Gi~VilD~v~nh~~~~~~~~~~-~~~~-~~~~~~~~~~---~~~~~~~~~-~~ln~~~p~v~~~i~~~~~~w~~~~g 131 (237)
|++||+||||+|+|||+.++..... .+.+ ....||...+ ..+.+.|+. ..+|+++|+|+++|++++++|++ +|
T Consensus 257 H~~GI~VILDvV~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~~i~d~lr~Wv~-~g 335 (1221)
T PRK14510 257 QSAGIAVILDVVFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILRLPMDVLRSWAK-RG 335 (1221)
T ss_pred HHCCCEEEEEEccccccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHHHHHHHHHHHHH-hC
Confidence 9999999999999999987533211 1222 2234554321 122344543 35799999999999999999999 99
Q ss_pred CcEEEecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhhCCCeEE-----EEecCCCCCCcccccc
Q psy9004 132 FDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIIT-----IAEDVSGMPASCRPVT 206 (237)
Q Consensus 132 iDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~-----i~E~~~~~~~~~~~~~ 206 (237)
|||||||++.+|.. .+..||+++++.++++.|+.++ |||.|...+..
T Consensus 336 VDGfRfDla~~l~r-----------------------~~~~f~~~~~~~l~ai~~d~~l~~~~ligE~Wd~~~~~----- 387 (1221)
T PRK14510 336 VDGFRLDLADELAR-----------------------EPDGFIDEFRQFLKAMDQDPVLRRLKMIAEVWDDGLGG----- 387 (1221)
T ss_pred CCEEEEechhhhcc-----------------------CccchHHHHHHHHHHhCCCcCcccCcEEEecccCCCCc-----
Confidence 99999999998721 1346899999999999998877 99999653211
Q ss_pred cCCccccccccCCcccccccccceeeeeee
Q psy9004 207 EGGTGFDYRLGRPGLDKSFYGNASLGLEIR 236 (237)
Q Consensus 207 ~~~~gfd~~~~~~~~~~~~~~~~~~~~~~~ 236 (237)
++.+ .|+..|.+||..|+-.||
T Consensus 388 -------~~~g-~f~~~~~~~N~~frd~vr 409 (1221)
T PRK14510 388 -------YQYG-KFPQYWGEWNDPLRDIMR 409 (1221)
T ss_pred -------cccC-CCCcceeeeccHHHHHHH
Confidence 1222 455668888888876554
No 28
>PRK13840 sucrose phosphorylase; Provisional
Probab=99.98 E-value=5.5e-32 Score=246.84 Aligned_cols=176 Identities=12% Similarity=0.047 Sum_probs=134.5
Q ss_pred CCCcCChHHhhH-HHHHcCcc----ccCc-cCCC-CCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeecccc
Q psy9004 2 RTNGFGTPEQLK-YLVDECHK----AGLF-GTPE-QLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHA 73 (237)
Q Consensus 2 ~~~~~Gl~~~L~-yl~~lGv~----~pi~-~~~~-~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~ 73 (237)
+||++||+++|+ ||++| |+ .|+| ++|. ++||+|+||++| |+|||++||++|++ ||+||+|+|+|||
T Consensus 16 ~GdL~gl~~kLd~yL~~l-v~~vhllPff~psp~sD~GYdv~DY~~VDP~fGt~eDf~~L~~-----giklmlDlV~NHt 89 (495)
T PRK13840 16 DGGLKSLTALLDGRLDGL-FGGVHILPFFYPIDGADAGFDPIDHTKVDPRLGDWDDVKALGK-----THDIMADLIVNHM 89 (495)
T ss_pred CCCHhHHHHHHHHHHHHH-hCeEEECCCccCCCCCCCCCCCcChhhcCcccCCHHHHHHHHh-----CCeEEEEECCCcC
Confidence 489999999999 59999 54 3899 6664 899999999999 99999999999995 9999999999999
Q ss_pred CCCccccccCC-C---CCCCCccCCCC-------------------CCC-CCC-----------CC-----CCCCCCCCH
Q psy9004 74 SKNVLDGLNEF-D---GTQACFFHDGP-------------------RGT-HPL-----------WD-----SRLFNYSEI 113 (237)
Q Consensus 74 ~~~~~~~~~~~-~---~~~~~~~~~~~-------------------~~~-~~~-----------~~-----~~~ln~~~p 113 (237)
|.+|+++.... . +....||...+ .+. ... |. .++||+.||
T Consensus 90 S~~h~WFqd~l~~~~~s~Y~D~fi~~d~~~~~~~~~~~~~~if~~~~g~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~NP 169 (495)
T PRK13840 90 SAESPQFQDVLAKGEASEYWPMFLTKDKVFPDGATEEDLAGIYRPRPGLPFTTYTLADGKTRLVWTTFTPQQIDIDVHSA 169 (495)
T ss_pred CCCcHHHHHHHHhCCCCCccCeEEECCCCCcCCCCCcccccccCCCCCCcccceEecCCCceEEeccCCcccceeCCCCH
Confidence 99988766532 1 11123332110 000 011 11 259999999
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEecccCccccccCCCCCCCCCCcccccCccC-ChhHHHHHHHHHHHHHhhCCCeEEEE
Q psy9004 114 EVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNV-DTDALIYLMVANKFLHDKYPEIITIA 192 (237)
Q Consensus 114 ~v~~~i~~~~~~w~~~~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~p~~~~i~ 192 (237)
+|+++|.+++++|++ .||||||+||+.++.++. ...+. .+++++||+++++.++.. +..+|+
T Consensus 170 ~V~~~i~~il~fwl~-~GVDgfRLDAv~~l~K~~--------------gt~c~~~pe~~~~l~~lr~~~~~~--~~~ll~ 232 (495)
T PRK13840 170 AGWEYLMSILDRFAA-SHVTLIRLDAAGYAIKKA--------------GTSCFMIPETFEFIDRLAKEARAR--GMEVLV 232 (495)
T ss_pred HHHHHHHHHHHHHHH-CCCCEEEEechhhhhcCC--------------CCCcCCChHHHHHHHHHHHHhhhc--CCEEEE
Confidence 999999999999998 799999999999884431 11122 257889999999999775 567899
Q ss_pred ecCCCCCC
Q psy9004 193 EDVSGMPA 200 (237)
Q Consensus 193 E~~~~~~~ 200 (237)
|.++....
T Consensus 233 Ei~~y~~~ 240 (495)
T PRK13840 233 EIHSYYKT 240 (495)
T ss_pred eCccccCc
Confidence 98866543
No 29
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=99.97 E-value=1.7e-31 Score=251.15 Aligned_cols=204 Identities=25% Similarity=0.324 Sum_probs=147.9
Q ss_pred CCCCcCChHHh--hHHHHHcCccc----cCcc-----------CCCCCCCCccccccc-CCCCC-------HHHHHHHHH
Q psy9004 1 MRTNGFGTPEQ--LKYLVDECHKA----GLFG-----------TPEQLKYLVDECHKA-GLFGT-------PEQLKYLVD 55 (237)
Q Consensus 1 ~~~~~~Gl~~~--L~yl~~lGv~~----pi~~-----------~~~~~gY~~~d~~~v-~~~Gt-------~~~l~~lv~ 55 (237)
+||++.|+++. |+|||+|||++ ||+. ...+|||+|..||++ ++|-+ ..|||.||+
T Consensus 193 ~rGTy~gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~ 272 (697)
T COG1523 193 LRGTYLGLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVK 272 (697)
T ss_pred hccceehhccccHHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHH
Confidence 58999999999 99999999987 6662 226999999999999 99954 459999999
Q ss_pred HHHHcCCEEEEEeeccccCCCcc-ccccCCCCCCCC-ccCCCCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHhCC
Q psy9004 56 ECHKAGLYVLLDVVHSHASKNVL-DGLNEFDGTQAC-FFHDGPRGTHPLW--DSRLFNYSEIEVLRFLLSNLRWYLEEYQ 131 (237)
Q Consensus 56 ~~H~~Gi~VilD~v~nh~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~ln~~~p~v~~~i~~~~~~w~~~~g 131 (237)
++|++||.||||||+|||+.... .....+++..+. ||...+++...++ ++..+|.++|.||++|++++++|+++|+
T Consensus 273 ~lHkaGI~VILDVVfNHTae~~~~g~t~~f~~id~~~Yyr~~~dg~~~N~TGcGNtln~~hpmvrk~ivDsLrYWv~e~h 352 (697)
T COG1523 273 ALHKAGIEVILDVVFNHTAEGNELGPTLSFRGIDPNYYYRLDPDGYYSNGTGCGNTLNTEHPMVRKLIVDSLRYWVEEYH 352 (697)
T ss_pred HHHHcCCEEEEEEeccCcccccCcCcccccccCCcCceEEECCCCCeecCCccCcccccCChHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999986422 222456777665 4444444544444 3458999999999999999999999999
Q ss_pred CcEEEecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhhCCCeEEEEecCCCCCCcccccccCCcc
Q psy9004 132 FDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTG 211 (237)
Q Consensus 132 iDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~i~E~~~~~~~~~~~~~~~~~g 211 (237)
|||||||-+..+...... . ...+ .++..+. -..+...+.+|||.|+..+ .|
T Consensus 353 VDGFRFDLa~~l~r~~~~-~---------------~~~~-~l~~~~~--~~p~l~~~kliAepwD~g~----------~g 403 (697)
T COG1523 353 VDGFRFDLAGVLGRETML-F---------------DINA-NLFLAGE--GDPVLSGVKLIAEPWDIGP----------GG 403 (697)
T ss_pred CCceeecchhhccccccc-c---------------ccCc-chhhhcc--CCccccCceeeecchhhcC----------CC
Confidence 999999999877433210 0 0000 0100010 0112234557777774332 11
Q ss_pred ccccccCCcc--cccccccceeeeeee
Q psy9004 212 FDYRLGRPGL--DKSFYGNASLGLEIR 236 (237)
Q Consensus 212 fd~~~~~~~~--~~~~~~~~~~~~~~~ 236 (237)
++.. .|| ..|.+||+.++..+|
T Consensus 404 --yqvG-~Fpd~~~~aewng~~rD~vr 427 (697)
T COG1523 404 --YQVG-NFPDSPRWAEWNGRFRDDVR 427 (697)
T ss_pred --cccc-cCCCccchhhhCCccccccc
Confidence 3444 678 899999999999887
No 30
>PLN02784 alpha-amylase
Probab=99.97 E-value=3.5e-30 Score=243.87 Aligned_cols=163 Identities=21% Similarity=0.231 Sum_probs=123.9
Q ss_pred cCChHHhhHHHHHcCccc----cCccCCCCCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCCccc
Q psy9004 5 GFGTPEQLKYLVDECHKA----GLFGTPEQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLD 79 (237)
Q Consensus 5 ~~Gl~~~L~yl~~lGv~~----pi~~~~~~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~ 79 (237)
.+||+++|+||++|||++ |++.+..++||+|.||+++ ++|||.++|++||++||++||+||+|+|+||++..+..
T Consensus 520 ~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDiViNH~ag~f~~ 599 (894)
T PLN02784 520 YMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDAVLNHRCAHFQN 599 (894)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEECcccccccccC
Confidence 469999999999999987 7778888999999999999 99999999999999999999999999999999865321
Q ss_pred c---ccCCCCCCCCccCCC----C-----CCC---C-CCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccCcc
Q psy9004 80 G---LNEFDGTQACFFHDG----P-----RGT---H-PLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSM 143 (237)
Q Consensus 80 ~---~~~~~~~~~~~~~~~----~-----~~~---~-~~~~~~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~~l 143 (237)
. .+.+.+. ..|.... . .+. . .....++||++||+||+.|.+++++|++++||||||+|+|+++
T Consensus 600 ~~g~~~~f~g~-~dW~d~~i~~ddp~F~GrG~~~sgddf~~lPDLDh~npeVR~eL~~WlkWL~~e~G~DGfRLDaVKgf 678 (894)
T PLN02784 600 QNGVWNIFGGR-LNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDLKEWLCWMRKEVGYDGWRLDFVRGF 678 (894)
T ss_pred CCCcccccCCe-ecCCCCcccCCCcccCCcCCcCcccccCcCCcCCCCCHHHHHHHHHHHHHHHhccCCCEEEEeccCCC
Confidence 1 0111110 0111100 0 000 0 1123469999999999999999999988899999999999977
Q ss_pred ccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy9004 144 LYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGM 198 (237)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~i~E~~~~~ 198 (237)
...|.+++ +++..| .++|||.|+..
T Consensus 679 --------------------------~~~Fvkey---v~a~kp-~F~VGEyWd~~ 703 (894)
T PLN02784 679 --------------------------WGGYVKDY---MEASEP-YFAVGEYWDSL 703 (894)
T ss_pred --------------------------CHHHHHHH---HhccCC-cEEEEEecccc
Confidence 12344444 344555 79999999873
No 31
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=99.97 E-value=9.8e-31 Score=237.34 Aligned_cols=172 Identities=14% Similarity=0.118 Sum_probs=131.1
Q ss_pred CCcCChHHhhH-HHHHcCccc----cCccCCCCCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCC
Q psy9004 3 TNGFGTPEQLK-YLVDECHKA----GLFGTPEQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN 76 (237)
Q Consensus 3 ~~~~Gl~~~L~-yl~~lGv~~----pi~~~~~~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~ 76 (237)
+++.+|...|+ ||++ ||++ |+|+||+++||+|+||++| |+|||+++|++|+++ |+||+|+|+||||.+
T Consensus 14 ~glgdl~g~l~~yL~~-~v~~i~LlPffps~sD~GYdv~DY~~VDP~~Gt~~Df~~L~~~-----~kvmlDlV~NHtS~~ 87 (470)
T TIGR03852 14 KNLKELNKVLENYFKD-AVGGVHLLPFFPSTGDRGFAPMDYTEVDPAFGDWSDVEALSEK-----YYLMFDFMINHISRQ 87 (470)
T ss_pred CChhhHHHHHHHHHHH-hCCEEEECCCCcCCCCCCcCchhhceeCcccCCHHHHHHHHHh-----hhHHhhhcccccccc
Confidence 33444444444 9999 6765 9999999999999999999 999999999999997 899999999999999
Q ss_pred ccccccCCCC----CCCCccC-C----C---C--CC--------CCC---CC----------------CCCCCCCCCHHH
Q psy9004 77 VLDGLNEFDG----TQACFFH-D----G---P--RG--------THP---LW----------------DSRLFNYSEIEV 115 (237)
Q Consensus 77 ~~~~~~~~~~----~~~~~~~-~----~---~--~~--------~~~---~~----------------~~~~ln~~~p~v 115 (237)
|+++.....+ ....||. . . + .. ..+ .| ..+|||+.||+|
T Consensus 88 h~WFq~~~~~~~~s~y~d~fi~~~~~w~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~np~v 167 (470)
T TIGR03852 88 SEYYQDFLEKKDNSKYKDLFIRYKDFWPNGRPTQEDVDLIYKRKDRAPYQEVTFADGSTEKVWNTFGEEQIDLDVTSETT 167 (470)
T ss_pred hHHHHHHHhcCCCCCccceEEecccccCCCCccccccccccCCCCCCCCCceEEcCCCCeEEEccCCccccccCCCCHHH
Confidence 9877654322 2223444 1 0 0 00 001 11 124999999999
Q ss_pred HHHHHHHHHHHHHhCCCcEEEecccCccccccCCCCCCCCCCcccccCccC--ChhHHHHHHHHHHHHHhhCCCeEEEEe
Q psy9004 116 LRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNV--DTDALIYLMVANKFLHDKYPEIITIAE 193 (237)
Q Consensus 116 ~~~i~~~~~~w~~~~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~p~~~~i~E 193 (237)
+++|.+++++|++ .||||||+||+.++.+ +....+. .++++++++++++.+ ..|++++|+|
T Consensus 168 ~e~i~~il~fwl~-~GvdgfRLDAv~~l~K--------------~~Gt~c~~l~pet~~~l~~~r~~~--~~~~~~ll~E 230 (470)
T TIGR03852 168 KRFIRDNLENLAE-HGASIIRLDAFAYAVK--------------KLGTNDFFVEPEIWELLDEVRDIL--APTGAEILPE 230 (470)
T ss_pred HHHHHHHHHHHHH-cCCCEEEEecchhhcc--------------cCCCCcccCChhHHHHHHHHHHHh--ccCCCEEEeH
Confidence 9999999999998 7999999999999843 2222332 268899999999877 4579999999
Q ss_pred cCCC
Q psy9004 194 DVSG 197 (237)
Q Consensus 194 ~~~~ 197 (237)
....
T Consensus 231 ~~~~ 234 (470)
T TIGR03852 231 IHEH 234 (470)
T ss_pred hhhh
Confidence 9643
No 32
>PLN02877 alpha-amylase/limit dextrinase
Probab=99.97 E-value=9e-30 Score=245.40 Aligned_cols=171 Identities=20% Similarity=0.180 Sum_probs=132.5
Q ss_pred CCCCcCChHHh-------hHHHHHcCccc----cCccC---------------------------------------CCC
Q psy9004 1 MRTNGFGTPEQ-------LKYLVDECHKA----GLFGT---------------------------------------PEQ 30 (237)
Q Consensus 1 ~~~~~~Gl~~~-------L~yl~~lGv~~----pi~~~---------------------------------------~~~ 30 (237)
.||.|.|++++ |+||++|||++ |+|.. ..+
T Consensus 361 ~RGtylgftE~~s~gi~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~~l~~~~~~s~~~q~~v~~~~~~d~yN 440 (970)
T PLN02877 361 FRGGYLAFTSQDSAGVLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPKELEKLPPDSEEQQAAITAIQDDDGYN 440 (970)
T ss_pred CCCcchhhhhhhhhHHHHHHHHHHcCCCEEEeCCccccCCcccccccccccccchhccccccchhhhhcccccccCCCCC
Confidence 36888888876 67777779987 77642 157
Q ss_pred CCCCccccccc-CCCCC-------HHHHHHHHHHHHHcCCEEEEEeeccccCCCcccc-ccCCCCCCCCccCC-CCCCCC
Q psy9004 31 LKYLVDECHKA-GLFGT-------PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG-LNEFDGTQACFFHD-GPRGTH 100 (237)
Q Consensus 31 ~gY~~~d~~~v-~~~Gt-------~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~ 100 (237)
|||+|..|+.+ ..|+| ..+||+||++||++||+||||+|+||++..++.. ...++...|.||.. ...+..
T Consensus 441 WGYDP~~YfaPEgSYatdP~g~~RI~efk~mV~~lH~~GI~VImDVVyNHt~~~g~~~~~s~ld~~vP~YY~r~~~~G~~ 520 (970)
T PLN02877 441 WGYNPVLWGVPKGSYASNPDGPCRIIEFRKMVQALNRIGLRVVLDVVYNHLHSSGPFDENSVLDKIVPGYYLRRNSDGFI 520 (970)
T ss_pred CCCCccccCCCCcccccCCCCcchHHHHHHHHHHHHHCCCEEEEEECCccccCCCCcchhhcccCCCCCceEEECCCCCc
Confidence 99999999999 99998 3589999999999999999999999998765543 24556666655543 333332
Q ss_pred CCC-CCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHH
Q psy9004 101 PLW-DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANK 179 (237)
Q Consensus 101 ~~~-~~~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 179 (237)
.+. +..+.+.+++.||++|++++++|+++|||||||||.+.++. .+.++++++
T Consensus 521 ~ns~c~n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlmg~i~--------------------------~~tm~~~~~ 574 (970)
T PLN02877 521 ENSTCVNNTASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLMGHLM--------------------------KRTMVRAKD 574 (970)
T ss_pred ccCCccCCCccCCHHHHHHHHHHHHHHHHHhCCCEEEEEcccccc--------------------------HHHHHHHHH
Confidence 222 23456788999999999999999999999999999999882 234556666
Q ss_pred HHHhhC--------CCeEEEEecCCC
Q psy9004 180 FLHDKY--------PEIITIAEDVSG 197 (237)
Q Consensus 180 ~~~~~~--------p~~~~i~E~~~~ 197 (237)
+++++. |+.+++||-|..
T Consensus 575 ~L~~i~~~~~~~dg~~i~lyGEgW~~ 600 (970)
T PLN02877 575 ALQSLTLERDGVDGSSIYLYGEGWDF 600 (970)
T ss_pred HHHHHhhhhcccCCCceEEEEeCCCC
Confidence 666653 789999999964
No 33
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=99.96 E-value=3.1e-30 Score=238.21 Aligned_cols=141 Identities=28% Similarity=0.377 Sum_probs=115.5
Q ss_pred CCcCChHHhhHHHHHcCccc----cCccC-CCCCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCC
Q psy9004 3 TNGFGTPEQLKYLVDECHKA----GLFGT-PEQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN 76 (237)
Q Consensus 3 ~~~~Gl~~~L~yl~~lGv~~----pi~~~-~~~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~ 76 (237)
||++||+++|+||++|||++ |++.+ ..+|||++.||+.+ |+|||+++|++||++||++||+||+|+|+||++.+
T Consensus 26 Gdl~Gi~~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~V~NH~s~~ 105 (505)
T COG0366 26 GDLKGITEKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDLVFNHTSDE 105 (505)
T ss_pred ccHHhHHHhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEeccCcCCCc
Confidence 99999999999999999886 88998 58999999999999 99999999999999999999999999999999999
Q ss_pred ccccccCCCCCC----CCccCCCC-------------CCCCCCCC---------------CCCCCCCCHHHHHHHHHHHH
Q psy9004 77 VLDGLNEFDGTQ----ACFFHDGP-------------RGTHPLWD---------------SRLFNYSEIEVLRFLLSNLR 124 (237)
Q Consensus 77 ~~~~~~~~~~~~----~~~~~~~~-------------~~~~~~~~---------------~~~ln~~~p~v~~~i~~~~~ 124 (237)
|.+......... ..||.... .-....|. ..+||+.||+|++.+.++++
T Consensus 106 ~~~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~~~~~~~ 185 (505)
T COG0366 106 HPWFKEARSSKPNPKRSDYYIWRDPDPDGTPPNNWFSVFGGDAWTWGNTGEYYLHLFSSEQPDLNWENPEVREELLDVVK 185 (505)
T ss_pred cHHHHHHhcCCCCcccCCCceEccCcccCCCCCcchhhcCCCCCCcCCCCceEEEecCCCCCCcCCCCHHHHHHHHHHHH
Confidence 865543222111 12222110 00112221 13799999999999999999
Q ss_pred HHHHhCCCcEEEecccCccc
Q psy9004 125 WYLEEYQFDGFRFDGVTSML 144 (237)
Q Consensus 125 ~w~~~~giDGfR~D~~~~l~ 144 (237)
+|++ +||||||+|+++++.
T Consensus 186 ~W~~-~gvDGfRlDa~~~~~ 204 (505)
T COG0366 186 FWLD-KGVDGFRLDAAKHIS 204 (505)
T ss_pred HHHH-cCCCeEEeccHhhhc
Confidence 9999 899999999999984
No 34
>KOG0471|consensus
Probab=99.94 E-value=1.4e-26 Score=215.60 Aligned_cols=144 Identities=24% Similarity=0.308 Sum_probs=114.2
Q ss_pred CCcCChHHhhHHHHHcCccc----cCccCCC-CCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCC
Q psy9004 3 TNGFGTPEQLKYLVDECHKA----GLFGTPE-QLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN 76 (237)
Q Consensus 3 ~~~~Gl~~~L~yl~~lGv~~----pi~~~~~-~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~ 76 (237)
|+.+||++||+||+++|+++ ||+.++. ++||++.||+.+ |+|||+++|++||+++|++||++|+|+|+||++..
T Consensus 37 G~~~GI~~kldyi~~lG~taiWisP~~~s~~~~~GY~~~d~~~l~p~fGt~edf~~Li~~~h~~gi~ii~D~viNh~~~~ 116 (545)
T KOG0471|consen 37 GDLKGITSKLDYIKELGFTAIWLSPFTKSSKPDFGYDASDLEQLRPRFGTEEDFKELILAMHKLGIKIIADLVINHRSDE 116 (545)
T ss_pred cccccchhhhhHHHhcCCceEEeCCCcCCCHHHhccCccchhhhcccccHHHHHHHHHHHHhhcceEEEEeeccccCCcc
Confidence 68999999999999999987 8888885 699999999999 99999999999999999999999999999999987
Q ss_pred ccccccCCCCCCC--CccCCCCCC--------CCCCC---------C----------------CCCCCCCCHHHHHHHHH
Q psy9004 77 VLDGLNEFDGTQA--CFFHDGPRG--------THPLW---------D----------------SRLFNYSEIEVLRFLLS 121 (237)
Q Consensus 77 ~~~~~~~~~~~~~--~~~~~~~~~--------~~~~~---------~----------------~~~ln~~~p~v~~~i~~ 121 (237)
++++......+.. .||...+.. .+..| . .+++|++||+|++.|.+
T Consensus 117 ~~wf~~~~~~~~~y~d~~~~~~~~~~~~g~~~~p~nw~~~~~~s~~~~~e~~~~~~l~~~~~~~pDln~~n~~V~~~~~~ 196 (545)
T KOG0471|consen 117 VEWFKASPTSKTGYEDWYPWHDGSSLDVGKRIPPLNWLSVFGGSAWPFDEGRQKYYLGQFAVLQPDLNYENPDVRKAIKE 196 (545)
T ss_pred ccccccCccccccceeeeeccCcccccccCCCCccchHhhhccccCcccccccceeccchhhcCCCCCCCCHHHHHHHHH
Confidence 7655433222111 111111000 01111 1 14899999999999999
Q ss_pred HHH-HHHHhCCCcEEEecccCcccccc
Q psy9004 122 NLR-WYLEEYQFDGFRFDGVTSMLYHN 147 (237)
Q Consensus 122 ~~~-~w~~~~giDGfR~D~~~~l~~~~ 147 (237)
+++ +|++ +||||||+|+++++....
T Consensus 197 ~l~~~~~~-~gvdGfRiD~v~~~~~~~ 222 (545)
T KOG0471|consen 197 WLRDFWLE-KGVDGFRIDAVKGYAGEN 222 (545)
T ss_pred HHHHHHhh-cCCCeEEEEccccccccc
Confidence 999 7877 899999999999986543
No 35
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=99.93 E-value=2.3e-25 Score=205.50 Aligned_cols=190 Identities=13% Similarity=0.137 Sum_probs=142.1
Q ss_pred HHhhHHHHHcCccc----cCccC---------CC-CCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeecccc
Q psy9004 9 PEQLKYLVDECHKA----GLFGT---------PE-QLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHA 73 (237)
Q Consensus 9 ~~~L~yl~~lGv~~----pi~~~---------~~-~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~ 73 (237)
....+||++|||++ |++.| |. +.||+++|| .| |.|||++||++|+++||++||+||+|+|+|||
T Consensus 77 ~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~-~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlVpnHT 155 (688)
T TIGR02455 77 DALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISF-DIDPLLGSEEELIQLSRMAAAHNAITIDDIIPAHT 155 (688)
T ss_pred hHHHHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccC-ccCcccCCHHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 34458999999875 99999 75 799999995 99 99999999999999999999999999999999
Q ss_pred CCCccccccC-C-CCCCCCcc-----------C--CCCCC----------------------------------CCCCCC
Q psy9004 74 SKNVLDGLNE-F-DGTQACFF-----------H--DGPRG----------------------------------THPLWD 104 (237)
Q Consensus 74 ~~~~~~~~~~-~-~~~~~~~~-----------~--~~~~~----------------------------------~~~~~~ 104 (237)
|..|+ ++.+ . ++..+.|| . ..+.+ ..++|.
T Consensus 156 s~ghd-F~lAr~~~~~Y~g~Y~mvei~~~~W~vwpd~~~~~~~~~l~~~~~~~L~~~g~i~~~l~rviF~~pg~e~s~Wt 234 (688)
T TIGR02455 156 GKGAD-FRLAELAHGDYPGLYHMVEIREEDWALLPEVPAGRDAVNLLPAQCDELKAKHYIVGQLQRVIFFEPGIKDTDWS 234 (688)
T ss_pred CCCcc-hHHHhhcCCCCCCceeeccccccccccCCCCCcccccccccHHHHHHHhhccCcccccccceecCCCcccCCce
Confidence 99986 3321 1 22223444 1 10100 112332
Q ss_pred C------------------------CCCCCCCHH--HHHHHH-HHHHHHHHhCCCcEEEecccCccccccCCCCCCCCCC
Q psy9004 105 S------------------------RLFNYSEIE--VLRFLL-SNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGH 157 (237)
Q Consensus 105 ~------------------------~~ln~~~p~--v~~~i~-~~~~~w~~~~giDGfR~D~~~~l~~~~~~~~~~~~~~ 157 (237)
. ++||+.||. |++.|. +++.+|++ +|++|||+||+..+...... .+..
T Consensus 235 ~d~~v~g~dG~~Rrw~Y~H~F~~~QPdLNw~dPs~av~~~~~gdal~~w~~-lG~~GfRLDAvpfLg~e~~~----~~~~ 309 (688)
T TIGR02455 235 ATGEITGVDGKTRRWVYLHYFKEGQPSLNWLDPTFAAQQLIIGDALHAIDC-LGARGLRLDANGFLGVERRA----EGTA 309 (688)
T ss_pred ecccccCCCccchhhhhhhhccCCCCccCccCccHHHHHHHHHHHHHHHHH-hccccceeccccceeeecCC----CCCC
Confidence 1 289999999 999999 89999999 89999999999988433111 0111
Q ss_pred cccccCccCChhHHHHHHHHHHHHH--hhCCCeEEEEecCCCCCCcccccccCCcccccccc
Q psy9004 158 YDEYFGLNVDTDALIYLMVANKFLH--DKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLG 217 (237)
Q Consensus 158 ~~~~~g~~~~~~~~~~~~~~~~~~~--~~~p~~~~i~E~~~~~~~~~~~~~~~~~gfd~~~~ 217 (237)
| ++.+.|++.+++.+. ..+++.++++|..-....+....+ + |.|+.|+
T Consensus 310 ~---------~e~h~ll~~~r~~l~~~~r~~Gg~ll~E~nl~~~d~~~~~g--~-~~dl~~d 359 (688)
T TIGR02455 310 W---------SEGHPLSLTGNQLIAGAIRKAGGFSFQELNLTIDDIAAMSH--G-GADLSYD 359 (688)
T ss_pred C---------CccCHHHHHHHHHHHHhhhcCCeeEeeeccCCHHHHHHHhC--C-Ccceeec
Confidence 1 346789999999998 888999999999877666666554 2 5555554
No 36
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=99.93 E-value=8e-25 Score=208.81 Aligned_cols=186 Identities=18% Similarity=0.180 Sum_probs=134.5
Q ss_pred CCCcCChHHhhHHHHHcCccc----cCccCC--CCCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccC
Q psy9004 2 RTNGFGTPEQLKYLVDECHKA----GLFGTP--EQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 74 (237)
Q Consensus 2 ~~~~~Gl~~~L~yl~~lGv~~----pi~~~~--~~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~ 74 (237)
+++|.+++++|+||++|||++ ||+.++ ++|||++.||+.| |.|||.++|++||++||++||+||+|+|+||++
T Consensus 12 ~~tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~a 91 (825)
T TIGR02401 12 GFTFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNHMA 91 (825)
T ss_pred CCCHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 578899999999999999986 888764 6799999999999 999999999999999999999999999999999
Q ss_pred CC---ccccccCC----CCCCCCcc----------------------------------------------CCC----CC
Q psy9004 75 KN---VLDGLNEF----DGTQACFF----------------------------------------------HDG----PR 97 (237)
Q Consensus 75 ~~---~~~~~~~~----~~~~~~~~----------------------------------------------~~~----~~ 97 (237)
.+ ++++.... .+....|| +.. +.
T Consensus 92 ~~~~~n~wf~dvl~~g~~S~y~~~Fdidw~~~~~~gkvllP~Lg~~y~~~l~~g~l~l~~d~~~~~~l~y~~~~~Pi~p~ 171 (825)
T TIGR02401 92 VHLEQNPWWWDVLKNGPSSAYAEYFDIDWDPLGGDGKLLLPILGDQYGAVLDRGEIKLRFDGDGTLALRYYDHRLPLAPG 171 (825)
T ss_pred cccccChHHHHHHHhCCCCCccCceEEeCCCCCCCCceeecccCchhhhHHhcCceeeeecCCCceeEEecCccCCcCcc
Confidence 76 23222110 00011122 110 00
Q ss_pred C------------CC--------------CCCC----------------CCCCCCCCHHHHHHHHHHHHHHHHhCCCcEE
Q psy9004 98 G------------TH--------------PLWD----------------SRLFNYSEIEVLRFLLSNLRWYLEEYQFDGF 135 (237)
Q Consensus 98 ~------------~~--------------~~~~----------------~~~ln~~~p~v~~~i~~~~~~w~~~~giDGf 135 (237)
. .. ..|- ...++..+|+|.+....++..|+++.-|||+
T Consensus 172 ty~~il~~~~~~~~~~~l~~ll~~Q~yRL~~Wr~a~~~inYRrFf~i~~L~~lr~E~~~Vf~~~h~~i~~lv~~g~vdGl 251 (825)
T TIGR02401 172 TLPELEVLEDVPGDGDALKKLLERQHYRLTWWRVAAGEINYRRFFDINDLAGVRVEDPAVFDATHRLVLELVAEGLVDGL 251 (825)
T ss_pred chhhhhhhccccCChhhHHHHHHHHHHHhhhhhccccccCcccccCccccccccCCCHHHHHHHHHHHHHHHHcCCCceE
Confidence 0 00 0121 1367888999999999999999997559999
Q ss_pred EecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhhCCCeEEEEe-cCCCCCCccccc-ccCCcccc
Q psy9004 136 RFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAE-DVSGMPASCRPV-TEGGTGFD 213 (237)
Q Consensus 136 R~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~i~E-~~~~~~~~~~~~-~~~~~gfd 213 (237)
|||.+.++. ++..||+.+++. ..|+.+++.| .+......-..+ ..+-.|||
T Consensus 252 RIDh~dGL~------------------------dP~~Yl~rLr~~---~~~~~yivvEKIl~~~E~Lp~~W~v~GTtGYd 304 (825)
T TIGR02401 252 RIDHIDGLA------------------------DPEGYLRRLREL---VGPARYLVVEKILAPGEHLPADWPVDGTTGYD 304 (825)
T ss_pred EeccccccC------------------------ChHHHHHHHHHh---cCCCceEEEEEeccCCCcCCCCCCcCcccCCh
Confidence 999999882 366899999854 4456889999 555533322222 23455666
Q ss_pred c
Q psy9004 214 Y 214 (237)
Q Consensus 214 ~ 214 (237)
+
T Consensus 305 f 305 (825)
T TIGR02401 305 F 305 (825)
T ss_pred h
Confidence 5
No 37
>smart00642 Aamy Alpha-amylase domain.
Probab=99.87 E-value=1.5e-22 Score=161.81 Aligned_cols=74 Identities=36% Similarity=0.501 Sum_probs=70.8
Q ss_pred CCCcCChHHhhHHHHHcCccc----cCccCC----CCCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccc
Q psy9004 2 RTNGFGTPEQLKYLVDECHKA----GLFGTP----EQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSH 72 (237)
Q Consensus 2 ~~~~~Gl~~~L~yl~~lGv~~----pi~~~~----~~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh 72 (237)
.||++||+++|+||++||+++ |+++++ .+|||++.||+++ |+|||+++|++||++||++||+||+|+|+||
T Consensus 15 ~G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH 94 (166)
T smart00642 15 GGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINH 94 (166)
T ss_pred CcCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 478999999999999999986 888888 7899999999999 9999999999999999999999999999999
Q ss_pred cCC
Q psy9004 73 ASK 75 (237)
Q Consensus 73 ~~~ 75 (237)
++.
T Consensus 95 ~~~ 97 (166)
T smart00642 95 TSD 97 (166)
T ss_pred CCC
Confidence 998
No 38
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=99.82 E-value=1.3e-19 Score=174.06 Aligned_cols=76 Identities=18% Similarity=0.201 Sum_probs=70.5
Q ss_pred CCCcCChHHhhHHHHHcCccc----cCccCC--CCCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccC
Q psy9004 2 RTNGFGTPEQLKYLVDECHKA----GLFGTP--EQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 74 (237)
Q Consensus 2 ~~~~~Gl~~~L~yl~~lGv~~----pi~~~~--~~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~ 74 (237)
+.+|++++++|+||++|||++ ||+.++ ++|||++.||+.| |.||+.++|++||++||++||+||+|+|+|||+
T Consensus 16 ~~tf~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~~ 95 (879)
T PRK14511 16 GFTFDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNHMA 95 (879)
T ss_pred CCCHHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 357889999999999999986 888765 7899999999999 999999999999999999999999999999999
Q ss_pred CCc
Q psy9004 75 KNV 77 (237)
Q Consensus 75 ~~~ 77 (237)
.++
T Consensus 96 ~~~ 98 (879)
T PRK14511 96 VGG 98 (879)
T ss_pred CcC
Confidence 864
No 39
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=99.81 E-value=5e-19 Score=178.97 Aligned_cols=74 Identities=18% Similarity=0.157 Sum_probs=69.5
Q ss_pred CCCcCChHHhhHHHHHcCccc----cCccCC--CCCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccC
Q psy9004 2 RTNGFGTPEQLKYLVDECHKA----GLFGTP--EQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 74 (237)
Q Consensus 2 ~~~~~Gl~~~L~yl~~lGv~~----pi~~~~--~~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~ 74 (237)
.++|.+++++|+||++|||++ ||+.++ ++|||++.||+.| |.|||.++|++||++||++||+||+|+|+||++
T Consensus 754 ~~tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~NH~~ 833 (1693)
T PRK14507 754 DFTFADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVPNHMG 833 (1693)
T ss_pred CCCHHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecccccC
Confidence 478899999999999999986 888864 6899999999999 999999999999999999999999999999999
Q ss_pred C
Q psy9004 75 K 75 (237)
Q Consensus 75 ~ 75 (237)
.
T Consensus 834 ~ 834 (1693)
T PRK14507 834 V 834 (1693)
T ss_pred C
Confidence 4
No 40
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=99.69 E-value=1.2e-16 Score=148.54 Aligned_cols=72 Identities=24% Similarity=0.259 Sum_probs=66.0
Q ss_pred cCChHHhhHHHHHcCccc----cCccCC--CCCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCC
Q psy9004 5 GFGTPEQLKYLVDECHKA----GLFGTP--EQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN 76 (237)
Q Consensus 5 ~~Gl~~~L~yl~~lGv~~----pi~~~~--~~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~ 76 (237)
|.-..+.|+||++|||.+ |||.+. +.|||+|.|.+.| |.+|+.+.|.+||+++|++||.+|+|+|||||+..
T Consensus 18 F~~A~~~l~yl~~LGIShLY~SPIftA~pGStHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI~DIVPNHMav~ 96 (889)
T COG3280 18 FADARALLDYLADLGISHLYLSPIFTARPGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLIVDIVPNHMAVG 96 (889)
T ss_pred HHHHHHhhHHHHhcCchheeccchhhcCCCCCCCccCCCccccChhhcChHHHHHHHHHHHhcCCceEEEecccchhcc
Confidence 446778999999999976 777665 7999999999999 99999999999999999999999999999999876
No 41
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=99.60 E-value=7.2e-15 Score=145.69 Aligned_cols=74 Identities=15% Similarity=0.142 Sum_probs=66.8
Q ss_pred CCcCChHHhhHHHHHcCccc----cCc-cCCCCCCCCccccccc-CCCC----CHHHHHHHHHHHHHc-CCEEEEEeecc
Q psy9004 3 TNGFGTPEQLKYLVDECHKA----GLF-GTPEQLKYLVDECHKA-GLFG----TPEQLKYLVDECHKA-GLYVLLDVVHS 71 (237)
Q Consensus 3 ~~~~Gl~~~L~yl~~lGv~~----pi~-~~~~~~gY~~~d~~~v-~~~G----t~~~l~~lv~~~H~~-Gi~VilD~v~n 71 (237)
|.|....++|++|+++|+++ ||+ .+++++.|++.||..+ |.|| +.++|++||+++|++ ||+||+|+|+|
T Consensus 129 G~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDvV~N 208 (1464)
T TIGR01531 129 GPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDIVFN 208 (1464)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEeeec
Confidence 44556788999999999885 898 5668899999999999 9995 899999999999997 99999999999
Q ss_pred ccCCC
Q psy9004 72 HASKN 76 (237)
Q Consensus 72 h~~~~ 76 (237)
||+.+
T Consensus 209 HTa~d 213 (1464)
T TIGR01531 209 HTANN 213 (1464)
T ss_pred ccccC
Confidence 99997
No 42
>KOG2212|consensus
Probab=99.55 E-value=1.9e-14 Score=123.97 Aligned_cols=112 Identities=20% Similarity=0.308 Sum_probs=83.1
Q ss_pred CCCCcccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCCcccc-------ccCCCCCCC------C--ccCCC
Q psy9004 31 LKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG-------LNEFDGTQA------C--FFHDG 95 (237)
Q Consensus 31 ~gY~~~d~~~v~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~-------~~~~~~~~~------~--~~~~~ 95 (237)
-.|+|.+|.--.+-|.+++|+.||..|.+-|+|+++|+|+|||+.....+ -...+++++ . -|+..
T Consensus 78 eRYQPvSYKL~tRSGNE~eF~dMV~RCN~VGVRiyVDvv~NHM~g~~~~G~~vGt~Gs~~~p~s~SfPGVPYs~~DFn~~ 157 (504)
T KOG2212|consen 78 ERYQPVSYKLCTRSGNEDEFRDMVTRCNNVGVRIYVDAVINHMCGNAVSGGTVGTCGSYFNPGSRSFPGVPYSGWDFNDG 157 (504)
T ss_pred eecccceEEeeccCCCHHHHHHHHHHhhccceEEEehhhhhhhccccccCCccccccCccCCCCCCCCCCCcccccCCCc
Confidence 36999987544999999999999999999999999999999998631111 011111111 0 01110
Q ss_pred ----CCCCCCCCCC------------CCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccCcc
Q psy9004 96 ----PRGTHPLWDS------------RLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSM 143 (237)
Q Consensus 96 ----~~~~~~~~~~------------~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~~l 143 (237)
..+....|++ .|||..+..||..|++.+.++++ +||.|||.||++||
T Consensus 158 kc~~~~~~i~~~Nda~~V~~C~LVGL~DL~Q~s~~Vr~Kive~L~hLid-lGVAGFRvDAsKHM 220 (504)
T KOG2212|consen 158 KCKTGSGDIENYNDATQVRDCRLVGLLDLAQGSDYVRSKIAEYLNHLID-IGVAGFRVDASKHM 220 (504)
T ss_pred ccCCCccccccccchhhhhcceEeecchhhhcchHHHHHHHHHHHHHHH-hccceeeechhhcc
Confidence 0122344443 38999999999999999999999 89999999999999
No 43
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=99.26 E-value=1.3e-10 Score=101.94 Aligned_cols=184 Identities=15% Similarity=0.104 Sum_probs=107.8
Q ss_pred CChHHhhHHHHHcCccccCccCCCCCCCC--cccccc-----c-CCC--CCHHHHHHHHHHHHHcCCEEEEEeeccccCC
Q psy9004 6 FGTPEQLKYLVDECHKAGLFGTPEQLKYL--VDECHK-----A-GLF--GTPEQLKYLVDECHKAGLYVLLDVVHSHASK 75 (237)
Q Consensus 6 ~Gl~~~L~yl~~lGv~~pi~~~~~~~gY~--~~d~~~-----v-~~~--Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~ 75 (237)
+.+.+.|+.|+++|+|+ |+.-....|+. ++++.. . ... .+-+-|+.+|++||++||+|...+.++..+.
T Consensus 19 ~~~~~~l~~l~~~~~N~-V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~~ 97 (311)
T PF02638_consen 19 EQIDEMLDDLKSAGFNA-VFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNAP 97 (311)
T ss_pred HHHHHHHHHHHHcCCCE-EEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCCC
Confidence 45788899999999998 44322222221 122111 1 111 1367899999999999999999996655443
Q ss_pred CccccccCCCCCCCCccCCCCCCCCC-----CCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccCccccccCCC
Q psy9004 76 NVLDGLNEFDGTQACFFHDGPRGTHP-----LWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGC 150 (237)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~~l~~~~~~~ 150 (237)
.. ......++.|+.....+... .-+..-||..+|+||++|++.++..++.|.|||+-||-.-... ...+.
T Consensus 98 ~~----~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~YdvDGIhlDdy~yp~-~~~g~ 172 (311)
T PF02638_consen 98 DV----SHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYDVDGIHLDDYFYPP-PSFGY 172 (311)
T ss_pred ch----hhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCCCCeEEeccccccc-ccCCC
Confidence 21 11122334443322111111 1123369999999999999999999999999999999443211 00000
Q ss_pred CCCCCCCcccccC-----ccC--------ChhHHHHHHHHHHHHHhhCCCeEEEEecC
Q psy9004 151 GEGFSGHYDEYFG-----LNV--------DTDALIYLMVANKFLHDKYPEIITIAEDV 195 (237)
Q Consensus 151 ~~~~~~~~~~~~g-----~~~--------~~~~~~~~~~~~~~~~~~~p~~~~i~E~~ 195 (237)
.......+.+..| ... ......|.+++.+++++.+|.+.+-.-..
T Consensus 173 ~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~~ik~~kP~v~~sisp~ 230 (311)
T PF02638_consen 173 DFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYDAIKAIKPWVKFSISPF 230 (311)
T ss_pred CCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEee
Confidence 0000000111111 001 12346789999999999999977655444
No 44
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=99.17 E-value=2.6e-10 Score=105.37 Aligned_cols=145 Identities=24% Similarity=0.272 Sum_probs=102.6
Q ss_pred CCCCCCcc--ccccc-CC-CC--CHHHHHHHHHHHHH---cCCEEEEEeeccccCCCccccccCCCCCCCCccCCCCCCC
Q psy9004 29 EQLKYLVD--ECHKA-GL-FG--TPEQLKYLVDECHK---AGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGT 99 (237)
Q Consensus 29 ~~~gY~~~--d~~~v-~~-~G--t~~~l~~lv~~~H~---~Gi~VilD~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (237)
.+|||++. ..-+. |. ++ .++++..||+.+|. ..|+||.|+|+.|.-++....++ ..++..
T Consensus 283 qNWGYDv~I~GsaAtNPalL~TlRPDElVdfiatLHnFp~gPIqvIyDlVyGHADNQ~~~LLn------~~flkG----- 351 (811)
T PF14872_consen 283 QNWGYDVVILGSAATNPALLETLRPDELVDFIATLHNFPTGPIQVIYDLVYGHADNQALDLLN------RRFLKG----- 351 (811)
T ss_pred cccCcceeeeccCCCCHHHHhcCCcHHHHHHHHHHhcCCCCCeEEEEeeecccccchhhHhhh------hhhccC-----
Confidence 68999853 22222 22 23 38999999999994 78999999999999887433332 223322
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHH
Q psy9004 100 HPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANK 179 (237)
Q Consensus 100 ~~~~~~~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 179 (237)
++.-..++|+.+|.||+-+.+.-+.=++ +|+||+|+|-+...-+-++-. +..+. -.+++.++.+
T Consensus 352 -PnMYGQdlnhq~P~VRAILLEmQRRK~n-~GaDGIRVDGgQDFk~fnplt------------~~ve~--DD~YL~~M~d 415 (811)
T PF14872_consen 352 -PNMYGQDLNHQNPVVRAILLEMQRRKIN-TGADGIRVDGGQDFKFFNPLT------------GRVEY--DDAYLLAMSD 415 (811)
T ss_pred -CccccccccccChHHHHHHHHHHHhhcc-cCCceeEecccccceeecccc------------ccccc--chHHHHHHHH
Confidence 1234568999999999999999999898 899999999998653222111 11111 2468888888
Q ss_pred HHHhhCCC---eEEEEecCCCCCC
Q psy9004 180 FLHDKYPE---IITIAEDVSGMPA 200 (237)
Q Consensus 180 ~~~~~~p~---~~~i~E~~~~~~~ 200 (237)
.++++.+. .++|-|.-.++|.
T Consensus 416 vvQ~I~~~~r~~f~IfEDGRPWP~ 439 (811)
T PF14872_consen 416 VVQEIGGARRLPFTIFEDGRPWPQ 439 (811)
T ss_pred HHhhccccceeEEEEecCCCcCCc
Confidence 88887664 6788898877765
No 45
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.05 E-value=1.2e-09 Score=97.98 Aligned_cols=180 Identities=14% Similarity=0.110 Sum_probs=116.7
Q ss_pred cCChHHhhHHHHHcCccccCccCCCCCCCCc--cccc-------cc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccC
Q psy9004 5 GFGTPEQLKYLVDECHKAGLFGTPEQLKYLV--DECH-------KA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 74 (237)
Q Consensus 5 ~~Gl~~~L~yl~~lGv~~pi~~~~~~~gY~~--~d~~-------~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~ 74 (237)
.+.+.+.|+.|+.||+|| +|+.....||.. +... -+ ..-++-+-|..+|++||++||+|+..+-+-.++
T Consensus 63 ~~el~~~ld~l~~ln~NT-v~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~~a 141 (418)
T COG1649 63 RQELKDILDDLQKLNFNT-VYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYRMA 141 (418)
T ss_pred HHHHHHHHHHHHHcCCce-eEEEEecCccccccccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeeeechhhcccC
Confidence 447889999999999999 777666666531 1111 11 123446789999999999999999999998888
Q ss_pred CCccccccCCCCCCCCccCCCCCCC----CCCC-CCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccCccccccCC
Q psy9004 75 KNVLDGLNEFDGTQACFFHDGPRGT----HPLW-DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHG 149 (237)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~~l~~~~~~ 149 (237)
...... ...++.|......+. +..| ...-||..+|+||++|.+.+...++.|.|||+.||---.. ...
T Consensus 142 ~~~s~~----~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~YdvDGIQfDd~fy~--~~~- 214 (418)
T COG1649 142 PPTSPL----TKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNYDVDGIQFDDYFYY--PIP- 214 (418)
T ss_pred CCCChh----HhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCCCCCceecceeecc--cCc-
Confidence 863211 112223322221111 1122 3345899999999999999999999999999999976542 211
Q ss_pred CCCCCCCC---cccccC---ccCC---------hhHHHHHHHHHHHHHhhCCCeEEEEec
Q psy9004 150 CGEGFSGH---YDEYFG---LNVD---------TDALIYLMVANKFLHDKYPEIITIAED 194 (237)
Q Consensus 150 ~~~~~~~~---~~~~~g---~~~~---------~~~~~~~~~~~~~~~~~~p~~~~i~E~ 194 (237)
.++..+ +.+... ...+ .....|.+.+..+|++++|++.+-.-.
T Consensus 215 --~gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VKavKp~v~~svsp 272 (418)
T COG1649 215 --FGYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTVKAVKPNVKFSVSP 272 (418)
T ss_pred --cccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHhhCCCeEEEEcc
Confidence 111000 000000 0111 234678999999999999997765544
No 46
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=98.93 E-value=6.5e-09 Score=79.91 Aligned_cols=117 Identities=21% Similarity=0.276 Sum_probs=81.9
Q ss_pred HhhHHHHHcCccccCccCCCC--CCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCCccccccCCCC
Q psy9004 10 EQLKYLVDECHKAGLFGTPEQ--LKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDG 86 (237)
Q Consensus 10 ~~L~yl~~lGv~~pi~~~~~~--~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~~~ 86 (237)
+-+++|+++|+++-...+.+- +-|-|+..... |.++ .+-|+++|++||++||+|++=+.++ .-.. .-.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~~-~d~~-------~~~ 74 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFDFS-WDED-------AAE 74 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEeee-cChH-------HHH
Confidence 457899999999844444433 33667777777 8888 7899999999999999999776666 2111 112
Q ss_pred CCCCccCCCCCCCC--------CCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEec
Q psy9004 87 TQACFFHDGPRGTH--------PLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 138 (237)
Q Consensus 87 ~~~~~~~~~~~~~~--------~~~~~~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D 138 (237)
.+|.|+.....|.. +.|....+| . ..+++++..++..++.|.+||+=+|
T Consensus 75 ~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~n--s-~Y~e~~~~~i~Ei~~~y~~DGiF~D 131 (132)
T PF14871_consen 75 RHPEWFVRDADGRPMRGERFGYPGWYTCCLN--S-PYREFLLEQIREILDRYDVDGIFFD 131 (132)
T ss_pred hCCceeeECCCCCCcCCCCcCCCCceecCCC--c-cHHHHHHHHHHHHHHcCCCCEEEec
Confidence 45677765554431 112222333 3 4559999999999999999999887
No 47
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=98.81 E-value=2.3e-07 Score=83.78 Aligned_cols=168 Identities=15% Similarity=0.105 Sum_probs=105.3
Q ss_pred ChHHhhHHHHHcCccc-----cCccCCCCCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCCcccc
Q psy9004 7 GTPEQLKYLVDECHKA-----GLFGTPEQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG 80 (237)
Q Consensus 7 Gl~~~L~yl~~lGv~~-----pi~~~~~~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~ 80 (237)
-|.+.++.++++|+.. +.+......--...|+..- .+|. +.|+.|++.+|++||+.=|.+.|.-++.++.
T Consensus 59 ~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP--~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~~S~-- 134 (394)
T PF02065_consen 59 KILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFP--NGLKPLADYIHSLGMKFGLWFEPEMVSPDSD-- 134 (394)
T ss_dssp HHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTST--THHHHHHHHHHHTT-EEEEEEETTEEESSSC--
T ss_pred HHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhC--CcHHHHHHHHHHCCCeEEEEeccccccchhH--
Confidence 4667778889999754 5665443332233455544 6775 3599999999999999999999988877732
Q ss_pred ccCCCCCCCCccCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccCccccccCCCCCCCCCCcc
Q psy9004 81 LNEFDGTQACFFHDGPRGTHP-LWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYD 159 (237)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~~l~~~~~~~~~~~~~~~~ 159 (237)
.-..+|.|....+..... ......||+++|+|++++.+.+...++++|||.+.+|.-..+... .+..
T Consensus 135 ---l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~~~~~-------~~~~-- 202 (394)
T PF02065_consen 135 ---LYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRDITEA-------GSPS-- 202 (394)
T ss_dssp ---HCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-TTS--------SSTT--
T ss_pred ---HHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEeccccCCCCC-------CCCC--
Confidence 223456676543222111 112235999999999999999999999999999999998766211 0000
Q ss_pred cccCccCChhHHH---HHHHHHHHHHhhCCCeEEEEecCC
Q psy9004 160 EYFGLNVDTDALI---YLMVANKFLHDKYPEIITIAEDVS 196 (237)
Q Consensus 160 ~~~g~~~~~~~~~---~~~~~~~~~~~~~p~~~~i~E~~~ 196 (237)
.....+. =+-++.+++++.+|++.+-.=.++
T Consensus 203 ------~~~~~~~~~~~~y~l~~~L~~~~P~v~iE~CssG 236 (394)
T PF02065_consen 203 ------LPEGYHRYVLGLYRLLDRLRARFPDVLIENCSSG 236 (394)
T ss_dssp ------S-GHHHHHHHHHHHHHHHHHHHTTTSEEEE-BTT
T ss_pred ------chHHHHHHHHHHHHHHHHHHHhCCCcEEEeccCC
Confidence 0001111 123567788899999888665554
No 48
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=98.79 E-value=9.8e-08 Score=86.04 Aligned_cols=74 Identities=24% Similarity=0.194 Sum_probs=58.6
Q ss_pred CCcCChHHhhHHHHHcCccc----cCccC-CCCCCCCccccccc-CCCCC------HHHHHHHHHHHH-HcCCEEEEEee
Q psy9004 3 TNGFGTPEQLKYLVDECHKA----GLFGT-PEQLKYLVDECHKA-GLFGT------PEQLKYLVDECH-KAGLYVLLDVV 69 (237)
Q Consensus 3 ~~~~Gl~~~L~yl~~lGv~~----pi~~~-~~~~gY~~~d~~~v-~~~Gt------~~~l~~lv~~~H-~~Gi~VilD~v 69 (237)
|.+..-.++|..++++|.++ |+-.- .+.--|.+.|...+ |.|.. .++++++|.+++ +.||.+|.|||
T Consensus 19 G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~DvV 98 (423)
T PF14701_consen 19 GPFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDVV 98 (423)
T ss_pred CCHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEEe
Confidence 44556678999999999886 33221 12344999999999 88754 379999999995 89999999999
Q ss_pred ccccCCC
Q psy9004 70 HSHASKN 76 (237)
Q Consensus 70 ~nh~~~~ 76 (237)
+|||+.+
T Consensus 99 ~NHtA~n 105 (423)
T PF14701_consen 99 LNHTANN 105 (423)
T ss_pred eccCcCC
Confidence 9999997
No 49
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=98.42 E-value=5.6e-06 Score=72.53 Aligned_cols=132 Identities=11% Similarity=0.140 Sum_probs=85.7
Q ss_pred CcCChHHhhHHHHHcCcccc-CccCCCC-CCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCCcccc
Q psy9004 4 NGFGTPEQLKYLVDECHKAG-LFGTPEQ-LKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG 80 (237)
Q Consensus 4 ~~~Gl~~~L~yl~~lGv~~p-i~~~~~~-~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~ 80 (237)
+.+-|.+.++.+++.||..- ++..... -+|.-.+|.-- .+|.++ ++||+++|++|++|++.+.+ +++.+++..
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~---~~~i~~l~~~G~~~~~~~~P-~i~~~~~~~ 97 (308)
T cd06593 22 DEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDP---EGMLSRLKEKGFKVCLWINP-YIAQKSPLF 97 (308)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCH---HHHHHHHHHCCCeEEEEecC-CCCCCchhH
Confidence 34467788899999997642 2222211 13333355555 788764 89999999999999999986 555543211
Q ss_pred ccCCCCCCCCccCCCCCCC---CCCCC--CCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccCcc
Q psy9004 81 LNEFDGTQACFFHDGPRGT---HPLWD--SRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSM 143 (237)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~---~~~~~--~~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~~l 143 (237)
. ......++.....+. ...|. ..-+|+.||++++++.+.++.+++ .|||||-+|....+
T Consensus 98 ~---e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~Gid~~~~D~~e~~ 161 (308)
T cd06593 98 K---EAAEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-MGVDCFKTDFGERI 161 (308)
T ss_pred H---HHHHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-hCCcEEecCCCCCC
Confidence 0 111122222211111 11232 246899999999999999999888 89999999988765
No 50
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=98.41 E-value=1.5e-06 Score=76.04 Aligned_cols=132 Identities=18% Similarity=0.309 Sum_probs=85.7
Q ss_pred CcCChHHhhHHHHHcCccccCccCCCCCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCCcccccc
Q psy9004 4 NGFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLN 82 (237)
Q Consensus 4 ~~~Gl~~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~ 82 (237)
+.+.|.+.++.++++|+..-.+-....|-..-.+|.-- .+|.+ .++||+++|++|+|+++-+.+ +++.+.....
T Consensus 28 s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~g~f~~d~~~FPd---p~~mi~~l~~~G~k~~l~i~P-~i~~~s~~~~- 102 (303)
T cd06592 28 NQETVLNYAQEIIDNGFPNGQIEIDDNWETCYGDFDFDPTKFPD---PKGMIDQLHDLGFRVTLWVHP-FINTDSENFR- 102 (303)
T ss_pred CHHHHHHHHHHHHHcCCCCCeEEeCCCccccCCccccChhhCCC---HHHHHHHHHHCCCeEEEEECC-eeCCCCHHHH-
Confidence 34568888899999998542222222221122355544 67875 589999999999999999988 4444321111
Q ss_pred CCCCCCCCccCCCCCC----CCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccCc
Q psy9004 83 EFDGTQACFFHDGPRG----THPLWD--SRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTS 142 (237)
Q Consensus 83 ~~~~~~~~~~~~~~~~----~~~~~~--~~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~~ 142 (237)
......++.....+ ....|. ..-+|+.||++++++.+.++..+.+.|||||-+|....
T Consensus 103 --e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~ 166 (303)
T cd06592 103 --EAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGIDSFKFDAGEA 166 (303)
T ss_pred --hhhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCCcEEEeCCCCc
Confidence 11122333222222 111232 24689999999999999999999669999999999864
No 51
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=98.09 E-value=0.00011 Score=64.32 Aligned_cols=203 Identities=16% Similarity=0.100 Sum_probs=116.2
Q ss_pred ChHHhhHHHHHcCccccCccCCCCCCCCccccccc--CCCCC----HHHHHHHHHHHHHcCCEEEEEeeccccCCCcccc
Q psy9004 7 GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA--GLFGT----PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG 80 (237)
Q Consensus 7 Gl~~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v--~~~Gt----~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~ 80 (237)
.+-+.|+.+++.++|+-++..-+.+|.-..+-... ...|. ..++++|+++||++||.+|.-+|.=- +.
T Consensus 14 ~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~Fk---D~--- 87 (316)
T PF13200_consen 14 RLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFK---DP--- 87 (316)
T ss_pred HHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEec---Ch---
Confidence 35566788888899886666556666433222221 22232 46899999999999999999988522 10
Q ss_pred ccCCCCCCCCccCCCCCCCCCCCC----CCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccCccccccCCCCCCCCC
Q psy9004 81 LNEFDGTQACFFHDGPRGTHPLWD----SRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSG 156 (237)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~~l~~~~~~~~~~~~~ 156 (237)
.+...+|.|--....| ..|. ..=+|..+++|++|++++.+...+ .|+|.+.||-+..=. .+..+. -
T Consensus 88 --~la~~~pe~av~~~~G--~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~-~GFdEIqfDYIRFP~---~~~~~~--l 157 (316)
T PF13200_consen 88 --VLAEAHPEWAVKTKDG--SVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAK-LGFDEIQFDYIRFPD---EGRLSG--L 157 (316)
T ss_pred --HHhhhChhhEEECCCC--CcccCCCCCccCCCCCHHHHHHHHHHHHHHHH-cCCCEEEeeeeecCC---CCcccc--c
Confidence 0001123332211111 1121 224788999999999999999998 899999999986321 000000 0
Q ss_pred CcccccCcc-CChhHHHHHHHHHHHHHhhCCCeEEEEecCCCCCCc------ccccccCCccccccccCCcccccccc
Q psy9004 157 HYDEYFGLN-VDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPAS------CRPVTEGGTGFDYRLGRPGLDKSFYG 227 (237)
Q Consensus 157 ~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~p~~~~i~E~~~~~~~~------~~~~~~~~~gfd~~~~~~~~~~~~~~ 227 (237)
.+....... ......+|++.+++.+++. ++.+-+..++..... -..+...+...|+.-.|-+|..|...
T Consensus 158 ~y~~~~~~~~r~~aI~~Fl~~a~~~l~~~--~v~vSaDVfG~~~~~~~~~~iGQ~~~~~a~~vD~IsPMiYPSh~~~g 233 (316)
T PF13200_consen 158 DYSENDTEESRVDAITDFLAYAREELHPY--GVPVSADVFGYVAWSPDDMGIGQDFEKIAEYVDYISPMIYPSHYGPG 233 (316)
T ss_pred ccCCCCCcchHHHHHHHHHHHHHHHHhHc--CCCEEEEecccccccCCCCCcCCCHHHHhhhCCEEEecccccccCcc
Confidence 010000000 1133467999999888765 455555555432221 11111123346777777777777553
No 52
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=98.02 E-value=4.5e-05 Score=67.85 Aligned_cols=95 Identities=22% Similarity=0.365 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHcCCEEEEEeeccccCCCccccc--cCC-CCCCCCccCCCCCCCC----CCCC--CCCCCCCCHHHHHHH
Q psy9004 49 QLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL--NEF-DGTQACFFHDGPRGTH----PLWD--SRLFNYSEIEVLRFL 119 (237)
Q Consensus 49 ~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~----~~~~--~~~ln~~~p~v~~~i 119 (237)
+.++||+++|++|+||++.+.+.-....+.... ..+ ......++.....+.. ..|. +.-+|+.||++++..
T Consensus 86 dp~~mi~~Lh~~G~kv~l~v~P~i~~~~~~~~~~~~~~~~~~~~g~~vk~~~G~~~~~~~~W~g~~~~~Dftnp~a~~Ww 165 (340)
T cd06597 86 NPKGMIDELHEQGVKVLLWQIPIIKLRPHPHGQADNDEDYAVAQNYLVQRGVGKPYRIPGQWFPDSLMLDFTNPEAAQWW 165 (340)
T ss_pred CHHHHHHHHHHCCCEEEEEecCccccccccccccchhHHHHHHCCEEEEcCCCCccccccccCCCceeecCCCHHHHHHH
Confidence 469999999999999999777632211100000 000 0111123322222211 2342 356999999999999
Q ss_pred HHHHHHHHHhCCCcEEEecccCcc
Q psy9004 120 LSNLRWYLEEYQFDGFRFDGVTSM 143 (237)
Q Consensus 120 ~~~~~~w~~~~giDGfR~D~~~~l 143 (237)
.+.++.+++++|||||.+|....+
T Consensus 166 ~~~~~~~~~~~Gidg~w~D~~E~~ 189 (340)
T cd06597 166 MEKRRYLVDELGIDGFKTDGGEHV 189 (340)
T ss_pred HHHHHHHHHhcCCcEEEecCCCcc
Confidence 999999997799999999988643
No 53
>KOG3625|consensus
Probab=98.02 E-value=5.1e-05 Score=73.39 Aligned_cols=68 Identities=18% Similarity=0.182 Sum_probs=52.4
Q ss_pred HHhhHHHHHcCccc----cCccCC-CCCCCCccccccc-CCCC------CHHHHHHHHHHHH-HcCCEEEEEeeccccCC
Q psy9004 9 PEQLKYLVDECHKA----GLFGTP-EQLKYLVDECHKA-GLFG------TPEQLKYLVDECH-KAGLYVLLDVVHSHASK 75 (237)
Q Consensus 9 ~~~L~yl~~lGv~~----pi~~~~-~~~gY~~~d~~~v-~~~G------t~~~l~~lv~~~H-~~Gi~VilD~v~nh~~~ 75 (237)
..+|.-.++.|.++ |+-.-- +.--|...|-..+ +.|- +.+|.++||+.|| +.+|--|-|+|+||++.
T Consensus 145 eprL~va~e~gYNmIHfTPlqelG~S~S~YSl~dql~~~~~~~~~~~k~s~eDV~~lV~~l~rewnvlsi~DvV~NHtAn 224 (1521)
T KOG3625|consen 145 EPRLRVAKESGYNMIHFTPLQELGLSRSCYSLADQLELNPDFSRPNRKYSFEDVGQLVEKLKREWNVLSITDVVYNHTAN 224 (1521)
T ss_pred hHHHHHHHHcCCceEeeeeHHHhccCCCccchHhhhhcChhhhccCCCCCHHHHHHHHHHHHhhcCeeeeehhhhhcccc
Confidence 45777788888765 333211 3334888888887 7775 6899999999998 58999999999999998
Q ss_pred C
Q psy9004 76 N 76 (237)
Q Consensus 76 ~ 76 (237)
+
T Consensus 225 n 225 (1521)
T KOG3625|consen 225 N 225 (1521)
T ss_pred C
Confidence 7
No 54
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=97.95 E-value=1.6e-05 Score=74.70 Aligned_cols=69 Identities=16% Similarity=0.187 Sum_probs=48.6
Q ss_pred hHHhhHHHHHcCccc----cCccCC---------CCCCCCccccccc-----CCCCCHHHHHHHHHHHHHcCCEEEEEee
Q psy9004 8 TPEQLKYLVDECHKA----GLFGTP---------EQLKYLVDECHKA-----GLFGTPEQLKYLVDECHKAGLYVLLDVV 69 (237)
Q Consensus 8 l~~~L~yl~~lGv~~----pi~~~~---------~~~gY~~~d~~~v-----~~~Gt~~~l~~lv~~~H~~Gi~VilD~v 69 (237)
|.+..+-++++||+. |-+.|. -..||+-+|-+++ ..|||.++|+.-|+++|+.||+||.|+|
T Consensus 589 IA~Na~lFk~wGITsFemAPQY~Ss~D~tFLDSiiqNGYAFtDRYDLg~s~ptKYGs~~dL~~AikALH~~GiqviaDwV 668 (809)
T PF02324_consen 589 IAKNADLFKSWGITSFEMAPQYRSSTDGTFLDSIIQNGYAFTDRYDLGMSKPTKYGSVEDLRNAIKALHAAGIQVIADWV 668 (809)
T ss_dssp HHHTHHHHHHTTEEEEE----S-B--SSSSHHHHTT-SSSBS-TT-SSSSS-BTTB-HHHHHHHHHHHHHTT-EEEEEE-
T ss_pred HHHhHHHHHhcCcceeeeCcceecCCCCcchhhHhhcCccccchhhhcCCCCCCCCCHHHHHHHHHHHHHcCcchhhhhc
Confidence 556778999999986 655544 2479998888764 6899999999999999999999999999
Q ss_pred ccccCCC
Q psy9004 70 HSHASKN 76 (237)
Q Consensus 70 ~nh~~~~ 76 (237)
|+.+-.-
T Consensus 669 pdQiYnL 675 (809)
T PF02324_consen 669 PDQIYNL 675 (809)
T ss_dssp TSEE---
T ss_pred hHhhhCC
Confidence 9988653
No 55
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=97.83 E-value=0.00012 Score=65.15 Aligned_cols=135 Identities=11% Similarity=0.163 Sum_probs=80.5
Q ss_pred cCChHHhhHHHHHcCcccc-CccCCCCC-CCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCCccccc
Q psy9004 5 GFGTPEQLKYLVDECHKAG-LFGTPEQL-KYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL 81 (237)
Q Consensus 5 ~~Gl~~~L~yl~~lGv~~p-i~~~~~~~-gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~ 81 (237)
.+.|.+.++.+++.++..- |+.....+ +| .+|.-- .+|-++. .++||+++|++|+||++-+.+.-....+....
T Consensus 23 ~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~--~~f~~d~~~FPdp~-~~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~ 99 (339)
T cd06602 23 VDEVKEVVENMRAAGIPLDVQWNDIDYMDRR--RDFTLDPVRFPGLK-MPEFVDELHANGQHYVPILDPAISANEPTGSY 99 (339)
T ss_pred HHHHHHHHHHHHHhCCCcceEEECcccccCc--cceecccccCCCcc-HHHHHHHHHHCCCEEEEEEeCccccCcCCCCC
Confidence 3457788889999998652 22222111 12 233333 5666542 28899999999999999876544332100000
Q ss_pred cCC-CCCCCCccCCCCCCCC---CCCC--CCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccCc
Q psy9004 82 NEF-DGTQACFFHDGPRGTH---PLWD--SRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTS 142 (237)
Q Consensus 82 ~~~-~~~~~~~~~~~~~~~~---~~~~--~~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~~ 142 (237)
..+ ++....+|.....+.. ..|. ..-+|++||++++...+.++.++++.|||||-+|....
T Consensus 100 ~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~Ep 166 (339)
T cd06602 100 PPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPFDGLWIDMNEP 166 (339)
T ss_pred HHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCCcEEEecCCCC
Confidence 000 0111122222222211 1222 23589999999999999999988878999999998753
No 56
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=97.80 E-value=7.4e-05 Score=65.82 Aligned_cols=131 Identities=16% Similarity=0.142 Sum_probs=80.4
Q ss_pred CcCChHHhhHHHHHcCcccc-CccCCC-CCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCCcccc
Q psy9004 4 NGFGTPEQLKYLVDECHKAG-LFGTPE-QLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG 80 (237)
Q Consensus 4 ~~~Gl~~~L~yl~~lGv~~p-i~~~~~-~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~ 80 (237)
+.+-|.+.++.+++.+|..- |+.... -.+|. +|.-- .+|-++ ++||+++|++|+||++-+.+.-.......
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~~~~--~f~~d~~~FPdp---~~~i~~l~~~g~k~~~~~~P~i~~~~~~~- 95 (317)
T cd06600 22 PQDKVVEVVDIMQKEGFPYDVVFLDIHYMDSYR--LFTWDPYRFPEP---KKLIDELHKRNVKLVTIVDPGIRVDQNYS- 95 (317)
T ss_pred CHHHHHHHHHHHHHcCCCcceEEEChhhhCCCC--ceeechhcCCCH---HHHHHHHHHCCCEEEEEeeccccCCCCCh-
Confidence 34467788888999997652 222211 11232 33223 577655 79999999999999998765533221000
Q ss_pred ccCCCCCCCCccCCCCCCC---CCCCCC--CCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccC
Q psy9004 81 LNEFDGTQACFFHDGPRGT---HPLWDS--RLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVT 141 (237)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~---~~~~~~--~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~ 141 (237)
....+....+|.....+. ...|.. .-+|+.||++++...+.++..+.+.|||||-+|...
T Consensus 96 -~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~gvdg~w~D~~E 160 (317)
T cd06600 96 -PFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQGVDGIWLDMNE 160 (317)
T ss_pred -HHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCCCceEEeeCCC
Confidence 000111122332222221 123332 368999999999999999988866999999999875
No 57
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=97.77 E-value=8.5e-05 Score=65.47 Aligned_cols=134 Identities=12% Similarity=0.064 Sum_probs=82.0
Q ss_pred CcCChHHhhHHHHHcCcccc-CccCC------CCCCCC-ccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccC
Q psy9004 4 NGFGTPEQLKYLVDECHKAG-LFGTP------EQLKYL-VDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 74 (237)
Q Consensus 4 ~~~Gl~~~L~yl~~lGv~~p-i~~~~------~~~gY~-~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~ 74 (237)
+.+.|.+.++.+++.||..- |+.-. ...|+. ..+|.-- .+|.+ .++||+++|++|++|++-+.+- +.
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~~d~~~FPd---p~~mi~~Lh~~G~~~~~~i~P~-v~ 96 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWEWDPERYPG---LDELIEELKARGIRVLTYINPY-LA 96 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeEEChhhCCC---HHHHHHHHHHCCCEEEEEecCc-ee
Confidence 44567888899999998652 32211 112221 1233323 57765 4899999999999999976643 33
Q ss_pred CCccccccCCCCCCCCccCCCCCCC---CCCC--CCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccCcc
Q psy9004 75 KNVLDGLNEFDGTQACFFHDGPRGT---HPLW--DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSM 143 (237)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~~l 143 (237)
.+...... +.....++.....+. ...| ...-+|+.||++++...+.++..+.+.|||||-+|....+
T Consensus 97 ~~~~~~y~--~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E~~ 168 (317)
T cd06594 97 DDGPLYYE--EAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVIKEMLLDLGLSGWMADFGEYL 168 (317)
T ss_pred cCCchhHH--HHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHHHHHhhhcCCcEEEecCCCCC
Confidence 32111100 111122332222221 1222 2357999999999999999988755589999999987654
No 58
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=97.72 E-value=0.00019 Score=63.32 Aligned_cols=132 Identities=12% Similarity=0.095 Sum_probs=78.7
Q ss_pred CcCChHHhhHHHHHcCcccc-CccCCCCC-CCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCCcccc
Q psy9004 4 NGFGTPEQLKYLVDECHKAG-LFGTPEQL-KYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG 80 (237)
Q Consensus 4 ~~~Gl~~~L~yl~~lGv~~p-i~~~~~~~-gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~ 80 (237)
+.+-|.+.++.+++.++..- ++..-.++ ++.-.+|.=- .+|..+ ++||+++|++|+||++.+.+. ++.+....
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~~~~~~~f~~d~~~FPdp---~~mi~~L~~~G~kv~~~i~P~-v~~~~~~y 97 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYWPKQGWGEWKFDPERFPDP---KAMVRELHEMNAELMISIWPT-FGPETENY 97 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhhcCCCceeEEEChhhCCCH---HHHHHHHHHCCCEEEEEecCC-cCCCChhH
Confidence 34457788888999987652 22211111 1111244434 677765 788999999999999976533 44332111
Q ss_pred ccCCCCCCCCccCCCCCCC--CCCCC--CCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccCc
Q psy9004 81 LNEFDGTQACFFHDGPRGT--HPLWD--SRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTS 142 (237)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~--~~~~~--~~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~~ 142 (237)
.. .....++.....+. ...|. ...+|++||++++.+.+.++..+.+.|||||-+|....
T Consensus 98 ~e---~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~Ep 160 (319)
T cd06591 98 KE---MDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYDKGVDAWWLDAAEP 160 (319)
T ss_pred HH---HHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhcCCCcEEEecCCCC
Confidence 10 11112222221111 12233 24799999999999887776555458999999999874
No 59
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.64 E-value=0.00031 Score=61.88 Aligned_cols=131 Identities=11% Similarity=0.070 Sum_probs=78.7
Q ss_pred cCChHHhhHHHHHcCcccc-CccCCCCC---CCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCCccc
Q psy9004 5 GFGTPEQLKYLVDECHKAG-LFGTPEQL---KYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLD 79 (237)
Q Consensus 5 ~~Gl~~~L~yl~~lGv~~p-i~~~~~~~---gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~ 79 (237)
.+-|.+.++.+++.++..- |+.-.... +-.-.+|.=- .+|.++ ++||+++|++|+||++.+.+--. .+++.
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp---~~mi~~L~~~g~k~~~~i~P~i~-~~~~~ 103 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDP---AAFVAKFHERGIRLAPNIKPGLL-QDHPR 103 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCH---HHHHHHHHHCCCEEEEEeCCccc-CCCHH
Confidence 3467888899999998652 33221111 1011123223 677654 79999999999999997765543 22211
Q ss_pred cccCCCCCCCCccCCCCCCC----CCCCC--CCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccCc
Q psy9004 80 GLNEFDGTQACFFHDGPRGT----HPLWD--SRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTS 142 (237)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~~ 142 (237)
.. ......+|.....+. ...|. ..-+|+.||+++++..+.++.-+.+.|||||-+|....
T Consensus 104 y~---e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E~ 169 (317)
T cd06599 104 YK---ELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLGIDSTWNDNNEY 169 (317)
T ss_pred HH---HHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCCCcEEEecCCCC
Confidence 10 111122332211111 12232 23699999999999999996655558999999998764
No 60
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=97.62 E-value=0.0002 Score=63.61 Aligned_cols=130 Identities=16% Similarity=0.171 Sum_probs=78.5
Q ss_pred CcCChHHhhHHHHHcCcccc-CccCCC-CCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCC-Cccc
Q psy9004 4 NGFGTPEQLKYLVDECHKAG-LFGTPE-QLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASK-NVLD 79 (237)
Q Consensus 4 ~~~Gl~~~L~yl~~lGv~~p-i~~~~~-~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~-~~~~ 79 (237)
+.+-|.+.++.+++.||..- |+.... -.+|. +|.-- .+|-++ ++|++++|++|++|++-+.+.-... ....
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~~~~--~f~~d~~~fPdp---~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~ 96 (339)
T cd06604 22 PEEEVREIADEFRERDIPCDAIYLDIDYMDGYR--VFTWDKERFPDP---KELIKELHEQGFKVVTIIDPGVKVDPGYDV 96 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECchhhCCCC--ceeeccccCCCH---HHHHHHHHHCCCEEEEEEeCceeCCCCChH
Confidence 34467888899999998652 222211 11232 22222 477655 8999999999999998876532211 1100
Q ss_pred cccCCCCCCCCccCCCCCCC---CCCCC--CCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccCc
Q psy9004 80 GLNEFDGTQACFFHDGPRGT---HPLWD--SRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTS 142 (237)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~~ 142 (237)
. .++....+|.....+. ...|. ..-+|+.||+++++..+.++..++ .|||||-+|....
T Consensus 97 ~---~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~-~Gvdg~w~D~~Ep 160 (339)
T cd06604 97 Y---EEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFVD-LGVDGIWNDMNEP 160 (339)
T ss_pred H---HHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHhh-CCCceEeecCCCc
Confidence 0 0011112222221111 11232 235899999999999999998886 8999999998764
No 61
>PRK10658 putative alpha-glucosidase; Provisional
Probab=97.61 E-value=0.00018 Score=69.30 Aligned_cols=129 Identities=11% Similarity=0.168 Sum_probs=81.5
Q ss_pred ChHHhhHHHHHcCccccCccCCCCC--CCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCCccccccC
Q psy9004 7 GTPEQLKYLVDECHKAGLFGTPEQL--KYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNE 83 (237)
Q Consensus 7 Gl~~~L~yl~~lGv~~pi~~~~~~~--gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~ 83 (237)
-|.+-++.+++.|+..-.+.....| +|.-.+|.=- .+|-++ +.||+++|++|+||++.+.+. ++.+++...
T Consensus 284 ~v~~~~~~~r~~~iP~d~i~lD~~w~~~~~~~~f~wd~~~FPdp---~~mi~~L~~~G~k~~~~i~P~-i~~~s~~f~-- 357 (665)
T PRK10658 284 TVNSFIDGMAERDLPLHVFHFDCFWMKEFQWCDFEWDPRTFPDP---EGMLKRLKAKGLKICVWINPY-IAQKSPLFK-- 357 (665)
T ss_pred HHHHHHHHHHHcCCCceEEEEchhhhcCCceeeeEEChhhCCCH---HHHHHHHHHCCCEEEEeccCC-cCCCchHHH--
Confidence 4667778888888865332222111 2222355444 677765 689999999999999997763 333321111
Q ss_pred CCCCCCCccCCCCCCCC---CCCC--CCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccCcc
Q psy9004 84 FDGTQACFFHDGPRGTH---PLWD--SRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSM 143 (237)
Q Consensus 84 ~~~~~~~~~~~~~~~~~---~~~~--~~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~~l 143 (237)
.+....+|....++.. ..|. ..-+|+.||++++...+.++.+++ .|||||-.|....+
T Consensus 358 -e~~~~gy~vk~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~d-~Gvdgfw~D~gE~~ 420 (665)
T PRK10658 358 -EGKEKGYLLKRPDGSVWQWDKWQPGMAIVDFTNPDACKWYADKLKGLLD-MGVDCFKTDFGERI 420 (665)
T ss_pred -HHHHCCeEEECCCCCEeeeeecCCCceeecCCCHHHHHHHHHHHHHHHh-cCCcEEEecCCcee
Confidence 1111233333322221 1232 346899999999999999999888 89999999987654
No 62
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=97.60 E-value=0.00035 Score=65.73 Aligned_cols=127 Identities=17% Similarity=0.190 Sum_probs=68.2
Q ss_pred hHHhhHHHHHcCccc------------cCccCCCCCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccC
Q psy9004 8 TPEQLKYLVDECHKA------------GLFGTPEQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 74 (237)
Q Consensus 8 l~~~L~yl~~lGv~~------------pi~~~~~~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~ 74 (237)
..+.|+.|+..-|+. |+-... +---..|.++ .+-=..+.+|.+|++||+.||++|.=..+.-..
T Consensus 120 ~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~---~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~ 196 (559)
T PF13199_consen 120 IEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTN---GQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAAN 196 (559)
T ss_dssp HHHHHHHHHHTT--EEEETS--SBTTB-S-SSS----EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEEE
T ss_pred HHHHHHHHHhhCcCeEEEEeeccccCCcCCCCC---CchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhccc
Confidence 456778888887775 222211 0011223333 333357899999999999999999765544333
Q ss_pred CCccccccCCCCCCCCccCC--CCCC------CCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccCc
Q psy9004 75 KNVLDGLNEFDGTQACFFHD--GPRG------THPLWDS--RLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTS 142 (237)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~--~~~~------~~~~~~~--~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~~ 142 (237)
.+. ...+..+.|+.. .... ....|.+ .-+|..||.-|++|.+.+...++.+|+|||-+|....
T Consensus 197 ~~~-----~~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~G~ 269 (559)
T PF13199_consen 197 NNY-----EEDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEWQNYIINQMNKAIQNFGFDGWHLDQLGN 269 (559)
T ss_dssp TT-------S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HHHHHHHHHHHHHHHHHHT--EEEEE-S--
T ss_pred cCc-----ccccCCchhhhhhccCCCccceeecCcccccceEEecCCCHHHHHHHHHHHHHHHHccCCceEeeeccCC
Confidence 331 112333344322 1110 1133444 4679999999999999999999999999999999864
No 63
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.59 E-value=0.00023 Score=62.72 Aligned_cols=130 Identities=12% Similarity=0.107 Sum_probs=80.0
Q ss_pred CcCChHHhhHHHHHcCccccCc-cCCCCCCC-----Cccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCC
Q psy9004 4 NGFGTPEQLKYLVDECHKAGLF-GTPEQLKY-----LVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN 76 (237)
Q Consensus 4 ~~~Gl~~~L~yl~~lGv~~pi~-~~~~~~gY-----~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~ 76 (237)
+.+-|.+.++.+++.++..-.+ .....++- .-.+|.=- .+|.++ ++||+++|++|+||++-+.+- +..+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp---~~mi~~L~~~G~k~~~~v~P~-v~~~ 97 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDP---AGMIADLAKKGVKTIVITEPF-VLKN 97 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCH---HHHHHHHHHcCCcEEEEEcCc-ccCC
Confidence 3456788889999999865222 22111110 11244444 788766 789999999999999998644 2222
Q ss_pred ccccccCCCCCCCCc-cCCCCCCC---CCCC--CCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccC
Q psy9004 77 VLDGLNEFDGTQACF-FHDGPRGT---HPLW--DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVT 141 (237)
Q Consensus 77 ~~~~~~~~~~~~~~~-~~~~~~~~---~~~~--~~~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~ 141 (237)
++... ......+ +.....+. ...| ...-+|++||++++.+.+.++..++ .|||||-+|...
T Consensus 98 ~~~y~---e~~~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~Gvdg~w~D~~E 164 (317)
T cd06598 98 SKNWG---EAVKAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKLID-QGVTGWWGDLGE 164 (317)
T ss_pred chhHH---HHHhCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHhhh-CCccEEEecCCC
Confidence 11110 0111122 22211111 1122 2457899999999999999988866 899999999875
No 64
>PRK10426 alpha-glucosidase; Provisional
Probab=97.56 E-value=0.00098 Score=64.03 Aligned_cols=128 Identities=9% Similarity=0.090 Sum_probs=77.2
Q ss_pred hHHhhHHHHHcCccc-cCccCCCCCCCCcc--------ccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCCc
Q psy9004 8 TPEQLKYLVDECHKA-GLFGTPEQLKYLVD--------ECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNV 77 (237)
Q Consensus 8 l~~~L~yl~~lGv~~-pi~~~~~~~gY~~~--------d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~ 77 (237)
+.+.++.+++.||.. .|+-- ...|+... +|.-- .+|.+ .++||+++|++|+||++-+.+--.. +.
T Consensus 223 v~~v~~~~r~~~IP~d~i~ld-dw~~~~~~~~g~~~~~~~~~d~~~FPd---p~~mi~~L~~~G~k~v~~i~P~v~~-~~ 297 (635)
T PRK10426 223 VQKKLDTMRNAGVKVNGIWAQ-DWSGIRMTSFGKRLMWNWKWDSERYPQ---LDSRIKQLNEEGIQFLGYINPYLAS-DG 297 (635)
T ss_pred HHHHHHHHHHcCCCeeEEEEe-cccccccccccccccccceEChhhCCC---HHHHHHHHHHCCCEEEEEEcCccCC-CC
Confidence 667788889999765 23321 21222211 23223 56665 4889999999999999997764332 21
Q ss_pred cccccCCCCCCCCccCCCCCCCC---CCC--CCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccCcc
Q psy9004 78 LDGLNEFDGTQACFFHDGPRGTH---PLW--DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSM 143 (237)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~~l 143 (237)
+... +.....++.....+.. ..| .+.-+|+.||++++...+.++..+.+.|||||-.|....+
T Consensus 298 ~~y~---e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~Gvdg~w~D~~E~~ 365 (635)
T PRK10426 298 DLCE---EAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLGCSGWMADFGEYL 365 (635)
T ss_pred HHHH---HHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcCCCEEeeeCCCCC
Confidence 1110 0111122222221110 112 2447999999999999998876555589999999987754
No 65
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=97.53 E-value=6.6e-05 Score=68.92 Aligned_cols=132 Identities=16% Similarity=0.255 Sum_probs=75.0
Q ss_pred ChHHhhHHHHHcCccccCccCCCCCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCCc-cccccCC
Q psy9004 7 GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNV-LDGLNEF 84 (237)
Q Consensus 7 Gl~~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~-~~~~~~~ 84 (237)
-+.+.++.+++.++..-.+-....+.-.-.+|.-- .+|. +.++|++.+|++|++|++.+.+.-..... ......
T Consensus 44 ~v~~~i~~~~~~~iP~d~~~iD~~~~~~~~~f~~d~~~FP---d~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~- 119 (441)
T PF01055_consen 44 EVREVIDRYRSNGIPLDVIWIDDDYQDGYGDFTWDPERFP---DPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDE- 119 (441)
T ss_dssp HHHHHHHHHHHTT--EEEEEE-GGGSBTTBTT-B-TTTTT---THHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHH-
T ss_pred HHHHHHHHHHHcCCCccceecccccccccccccccccccc---chHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhh-
Confidence 45677888888887642222111111122244333 5666 45899999999999999999884333321 000000
Q ss_pred CCCCCCccCCCCCC---CCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccCcc
Q psy9004 85 DGTQACFFHDGPRG---THPLWD--SRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSM 143 (237)
Q Consensus 85 ~~~~~~~~~~~~~~---~~~~~~--~~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~~l 143 (237)
.....++.....+ ....|. ...+|++||++++.+.+.++..++.+|||||-+|.....
T Consensus 120 -~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~~ 182 (441)
T PF01055_consen 120 -AKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGVDGWWLDFGEPS 182 (441)
T ss_dssp -HHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST-SEEEEESTTTB
T ss_pred -HhhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccCCceEEeecCCcc
Confidence 0011222222222 111244 357899999999999999999999779999999997644
No 66
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=97.30 E-value=0.0025 Score=56.50 Aligned_cols=109 Identities=12% Similarity=0.056 Sum_probs=73.0
Q ss_pred CChHHhhHHHHHcCccccCccCCCCCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCCccccccCC
Q psy9004 6 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF 84 (237)
Q Consensus 6 ~Gl~~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~ 84 (237)
.-|.+.++.+++.+|..-++-....+-..-.+|+-- .+|.++ ++||+++|++|++|++.+.+--. ..
T Consensus 24 ~ev~~v~~~~r~~~IP~D~i~lDidy~~~~~~Ft~d~~~FPdp---~~mv~~L~~~G~klv~~i~P~i~-~g-------- 91 (332)
T cd06601 24 SDLEEVVEGYRDNNIPLDGLHVDVDFQDNYRTFTTNGGGFPNP---KEMFDNLHNKGLKCSTNITPVIS-YG-------- 91 (332)
T ss_pred HHHHHHHHHHHHcCCCCceEEEcCchhcCCCceeecCCCCCCH---HHHHHHHHHCCCeEEEEecCcee-cC--------
Confidence 346677788888887652222221111122344434 688776 78999999999999998764322 00
Q ss_pred CCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccC
Q psy9004 85 DGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVT 141 (237)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~ 141 (237)
. .| .+.+.-.|+.||+++++..+..+.+.+ .|||||=+|...
T Consensus 92 --~--~~----------~~~~~~pDftnp~ar~wW~~~~~~l~~-~Gv~~~W~DmnE 133 (332)
T cd06601 92 --G--GL----------GSPGLYPDLGRPDVREWWGNQYKYLFD-IGLEFVWQDMTT 133 (332)
T ss_pred --c--cC----------CCCceeeCCCCHHHHHHHHHHHHHHHh-CCCceeecCCCC
Confidence 0 00 112335799999999999888888887 799999999865
No 67
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=97.28 E-value=0.0024 Score=61.43 Aligned_cols=125 Identities=14% Similarity=0.096 Sum_probs=75.9
Q ss_pred ChHHhhHHHHHcCcccc---CccCCCCCCCCcc-----ccccc--CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCC
Q psy9004 7 GTPEQLKYLVDECHKAG---LFGTPEQLKYLVD-----ECHKA--GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN 76 (237)
Q Consensus 7 Gl~~~L~yl~~lGv~~p---i~~~~~~~gY~~~-----d~~~v--~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~ 76 (237)
-|...|+.|+++|+++- .|..|...|.... ++.-+ +-|. . +.-. -+|++|++|..++.+=-.+-.
T Consensus 335 ~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~~~lp~r~d~f~-~--~aw~--l~~r~~v~v~AWmp~~~~~~~ 409 (671)
T PRK14582 335 NIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPNRLLPMRADLFN-R--VAWQ--LRTRAGVNVYAWMPVLSFDLD 409 (671)
T ss_pred HHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCccccccccCCcC-H--HHHH--HHHhhCCEEEEeccceeeccC
Confidence 57788999999999982 2234544444333 33322 2222 1 1222 289999999999876544332
Q ss_pred cc-ccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccCcc
Q psy9004 77 VL-DGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSM 143 (237)
Q Consensus 77 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~~l 143 (237)
.. .....++ ....+....+.|... |+..+|+||+.|.+++...+..+.|||+-||-=..+
T Consensus 410 ~~~~~~~~~~------~~~~~~~~~~~~~~r-l~P~~pe~r~~i~~i~~dla~~~~~dGilf~Dd~~l 470 (671)
T PRK14582 410 PTLPRVKRLD------TGEGKAQIHPEQYRR-LSPFDDRVRAQVGMLYEDLAGHAAFDGILFHDDAVL 470 (671)
T ss_pred CCcchhhhcc------ccCCccccCCCCCcC-CCCCCHHHHHHHHHHHHHHHHhCCCceEEecccccc
Confidence 10 0000110 001111123345444 999999999999999999999889999999864433
No 68
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.20 E-value=0.0021 Score=55.97 Aligned_cols=127 Identities=15% Similarity=0.080 Sum_probs=73.4
Q ss_pred CcCChHHhhHHHHHcCcccc-CccCCCCCCC--------Cccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeecccc
Q psy9004 4 NGFGTPEQLKYLVDECHKAG-LFGTPEQLKY--------LVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHA 73 (237)
Q Consensus 4 ~~~Gl~~~L~yl~~lGv~~p-i~~~~~~~gY--------~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~ 73 (237)
+.+-|.+.++.+++.||..- |+.-...++. .-.+|.=- .+|.++ ++||+++|++|+|||+-+.+...
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp---~~mi~~Lh~~G~k~v~~v~P~~~ 99 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDP---EKLLQDLHDRGLKVTLNLHPADG 99 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCH---HHHHHHHHHCCCEEEEEeCCCcc
Confidence 44567788888999998652 2221122211 11233333 677765 89999999999999999987542
Q ss_pred CCCccccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccC
Q psy9004 74 SKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVT 141 (237)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~ 141 (237)
.......... +..........-+...+|+.||+.++...+.+..-+...|||||-.|...
T Consensus 100 ~~~~~~~y~~--------~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~~Gidg~W~D~~E 159 (292)
T cd06595 100 IRAHEDQYPE--------MAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEKQGVDFWWLDWQQ 159 (292)
T ss_pred cCCCcHHHHH--------HHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHhcCCcEEEecCCC
Confidence 1111000000 00000000000012357999999998776666554445999999999654
No 69
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=97.19 E-value=0.00076 Score=59.97 Aligned_cols=130 Identities=10% Similarity=-0.052 Sum_probs=79.7
Q ss_pred CcCChHHhhHHHHHcCcccc-CccCCC-CCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCC-ccc
Q psy9004 4 NGFGTPEQLKYLVDECHKAG-LFGTPE-QLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN-VLD 79 (237)
Q Consensus 4 ~~~Gl~~~L~yl~~lGv~~p-i~~~~~-~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~-~~~ 79 (237)
+...|.+.++.+++.|+..- ++.... ..+|. +|.-- .+|.++ +.||+++|++|+||++.+.+--.... .+.
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~~~~--~f~~d~~~FPdp---~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~ 96 (339)
T cd06603 22 DQEDVKEVDAGFDEHDIPYDVIWLDIEHTDGKR--YFTWDKKKFPDP---EKMQEKLASKGRKLVTIVDPHIKRDDGYYV 96 (339)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEChHHhCCCC--ceEeCcccCCCH---HHHHHHHHHCCCEEEEEecCceecCCCCHH
Confidence 34467888899999998652 322221 11232 23223 677766 88999999999999999875543221 100
Q ss_pred cccCCCCCCCCccCCCCCCC---CCCCC--CCCCCCCCHHHHHHHHHHHHHHHH--hCCCcEEEecccC
Q psy9004 80 GLNEFDGTQACFFHDGPRGT---HPLWD--SRLFNYSEIEVLRFLLSNLRWYLE--EYQFDGFRFDGVT 141 (237)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~ln~~~p~v~~~i~~~~~~w~~--~~giDGfR~D~~~ 141 (237)
. .......++.....+. ...|. ...+|++||++++...+.++..+. ..|+|||=+|...
T Consensus 97 y---~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~g~~g~w~D~~E 162 (339)
T cd06603 97 Y---KEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKYKGSTENLYIWNDMNE 162 (339)
T ss_pred H---HHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhhcccCCCceEEeccCC
Confidence 0 0011112222222211 11232 346899999999999999988875 3699999999764
No 70
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=97.09 E-value=0.0054 Score=53.87 Aligned_cols=127 Identities=13% Similarity=0.203 Sum_probs=76.7
Q ss_pred HHHHHHHHHcCCEEEEEeeccccCCCccccccCCCCCCCCccCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHh
Q psy9004 51 KYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW-DSRLFNYSEIEVLRFLLSNLRWYLEE 129 (237)
Q Consensus 51 ~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ln~~~p~v~~~i~~~~~~w~~~ 129 (237)
.+=|+++|+.|.+||.=+.+.-.-.....+........+.|. .+..+.| +...+|+.+|+.++.|.+-+...++
T Consensus 84 ~~~i~~Lk~~g~~viaYlSvGe~E~~R~y~~~~~~~~~~~~l----~~~n~~W~g~~~vd~~~~~W~~il~~rl~~l~~- 158 (315)
T TIGR01370 84 PEEIVRAAAAGRWPIAYLSIGAAEDYRFYWQKGWKVNAPAWL----GNEDPDWPGNYDVKYWDPEWKAIAFSYLDRVIA- 158 (315)
T ss_pred HHHHHHHHhCCcEEEEEEEchhccccchhhhhhhhcCCHHHh----CCCCCCCCCceeEecccHHHHHHHHHHHHHHHH-
Confidence 344567788999988665554332221100000000011222 1345678 6778999999999999998887777
Q ss_pred CCCcEEEecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhhCCCeEEEE
Q psy9004 130 YQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIA 192 (237)
Q Consensus 130 ~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~i~ 192 (237)
.|+|||=+|.+......... .... ......-..+++.+.+.+++.+|++++|.
T Consensus 159 kGfDGvfLD~lDsy~~~~~~-----~~~~-----~~~~~~m~~~i~~Ia~~ar~~~P~~~II~ 211 (315)
T TIGR01370 159 QGFDGVYLDLIDAFEYWAEN-----GDNR-----PGAAAEMIAFVCEIAAYARAQNPQFVIIP 211 (315)
T ss_pred cCCCeEeeccchhhhhhccc-----CCcc-----hhhHHHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 69999999998754111000 0000 00012236688888888899999999983
No 71
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=96.92 E-value=0.0064 Score=54.50 Aligned_cols=97 Identities=15% Similarity=0.129 Sum_probs=65.7
Q ss_pred cccCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCCccccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHH
Q psy9004 39 HKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRF 118 (237)
Q Consensus 39 ~~v~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~ 118 (237)
+.|.-||+.+ .+++..||++|+||++.. .. + .-...+|+.|+.
T Consensus 57 tti~~~~~~~--~~~~~~A~~~~v~v~~~~-------~~-----------~-----------------~~~l~~~~~R~~ 99 (358)
T cd02875 57 TTIAIFGDID--DELLCYAHSKGVRLVLKG-------DV-----------P-----------------LEQISNPTYRTQ 99 (358)
T ss_pred eEEEecCCCC--HHHHHHHHHcCCEEEEEC-------cc-----------C-----------------HHHcCCHHHHHH
Confidence 3335678766 689999999999999641 10 0 001458899999
Q ss_pred HHHHHHHHHHhCCCcEEEecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhhCCCeE
Q psy9004 119 LLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEII 189 (237)
Q Consensus 119 i~~~~~~w~~~~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~ 189 (237)
+++.+..+++++|.||+-||-=.-.. . +......-..|++++++++++..+...
T Consensus 100 fi~siv~~~~~~gfDGIdIDwE~p~~-~----------------~~~d~~~~t~llkelr~~l~~~~~~~~ 153 (358)
T cd02875 100 WIQQKVELAKSQFMDGINIDIEQPIT-K----------------GSPEYYALTELVKETTKAFKKENPGYQ 153 (358)
T ss_pred HHHHHHHHHHHhCCCeEEEcccCCCC-C----------------CcchHHHHHHHHHHHHHHHhhcCCCcE
Confidence 99888888988999999999642110 0 000012236799999999987655533
No 72
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=96.89 E-value=0.015 Score=54.39 Aligned_cols=140 Identities=17% Similarity=0.288 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHcCCEEEEEeeccccC--CC---cccccc--C------CCCCCCCccCCCCCCCCCCCCCCCCCCCCHH
Q psy9004 48 EQLKYLVDECHKAGLYVLLDVVHSHAS--KN---VLDGLN--E------FDGTQACFFHDGPRGTHPLWDSRLFNYSEIE 114 (237)
Q Consensus 48 ~~l~~lv~~~H~~Gi~VilD~v~nh~~--~~---~~~~~~--~------~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~ 114 (237)
.+++++.+.||++||++|-|+.+.-.. .+ ++..+. . .-|..|..|.... -.|+.+-+|+..-+
T Consensus 198 ~Q~~~~~~yA~~~Gi~L~gDLpigV~~dsaDvWa~~~lF~l~~~~~p~~vaGaPPD~Fs~~G----Q~WG~P~y~w~~l~ 273 (497)
T PRK14508 198 RQWKALKAYANDKGIEIIGDLPIYVAYDSADVWANPELFKLDEDGKPTVVAGVPPDYFSETG----QLWGNPVYNWDALR 273 (497)
T ss_pred HHHHHHHHHHHHCCCEEEEeeecccCCCCHHHHcChhhhcCCCCCCcceeeeCCCCCCCccc----CcCCCCCcCHHHHH
Confidence 678889999999999999999874333 32 111110 0 1244455554432 35777777653211
Q ss_pred --HHHHHHHHHHHHHHhCCCcEEEecccCccccccCCCCCC----CCCCcccccCccCChhHHHHHHHHHHHHHhhCCCe
Q psy9004 115 --VLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEG----FSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEI 188 (237)
Q Consensus 115 --v~~~i~~~~~~w~~~~giDGfR~D~~~~l~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~ 188 (237)
--+.+++-++.-++ .+|.+|||.+..+. .-..+|.+ ..|.|- .-...++++.+. ...+++
T Consensus 274 ~~gy~ww~~rlr~~~~--~~~~lRIDH~~Gf~-r~W~IP~~~~~a~~G~~v-------~~p~~~l~~~l~----~e~~~~ 339 (497)
T PRK14508 274 KDGYRWWIERLRRSFK--LYDIVRIDHFRGFE-AYWEIPAGEKTAINGRWV-------PGPGKDLFEAVK----EELGDL 339 (497)
T ss_pred hcCcHHHHHHHHHHHH--hCCeEEecchhhhc-eeeeecCCCCCCCCCeee-------cCCHHHHHHHHH----HHhCCC
Confidence 12346666666666 67889999997652 11222221 123332 222345555554 334789
Q ss_pred EEEEecCCCCCCccccc
Q psy9004 189 ITIAEDVSGMPASCRPV 205 (237)
Q Consensus 189 ~~i~E~~~~~~~~~~~~ 205 (237)
.+|||..+.-+...+..
T Consensus 340 ~vigEDLG~vp~~V~~~ 356 (497)
T PRK14508 340 PIIAEDLGVITPDVEEL 356 (497)
T ss_pred CEEEeECCCCCHHHHHH
Confidence 99999999877665543
No 73
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=96.86 E-value=0.04 Score=46.76 Aligned_cols=138 Identities=14% Similarity=0.117 Sum_probs=76.1
Q ss_pred hHHhhHHHHHcCccc---cCccCCCCCCCCccccccc-CC--CC--CHHHHHHHHHHHHHcCCEEEEEeeccccCCCccc
Q psy9004 8 TPEQLKYLVDECHKA---GLFGTPEQLKYLVDECHKA-GL--FG--TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLD 79 (237)
Q Consensus 8 l~~~L~yl~~lGv~~---pi~~~~~~~gY~~~d~~~v-~~--~G--t~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~ 79 (237)
+.+-++.++++|+++ |+.- ..+... +. +. ..+.|+++|++|+++||+||+|+--. +
T Consensus 23 ~~~~~~~~~~~G~n~VRi~v~~---------~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~---~---- 86 (281)
T PF00150_consen 23 TEADFDQLKALGFNTVRIPVGW---------EAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNA---P---- 86 (281)
T ss_dssp HHHHHHHHHHTTESEEEEEEES---------TSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEES---T----
T ss_pred HHHHHHHHHHCCCCEEEeCCCH---------HHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccC---c----
Confidence 456789999999987 4441 011111 21 11 25789999999999999999996543 1
Q ss_pred cccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhC----CCcEEEecccCccccccCCCCCCCC
Q psy9004 80 GLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEY----QFDGFRFDGVTSMLYHNHGCGEGFS 155 (237)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~~w~~~~----giDGfR~D~~~~l~~~~~~~~~~~~ 155 (237)
.|. .........+...+.+.+..+.+.++| .|-||-+=.=... . ...
T Consensus 87 ----------~w~-----------~~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~-------~-~~~ 137 (281)
T PF00150_consen 87 ----------GWA-----------NGGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNG-------G-NDD 137 (281)
T ss_dssp ----------TCS-----------SSTSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCS-------T-TST
T ss_pred ----------ccc-----------ccccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccc-------c-CCc
Confidence 110 011122334455666666666666665 3444432111000 0 000
Q ss_pred CCcccccCccCChhHHHHHHHHHHHHHhhCCCeEEEEec
Q psy9004 156 GHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAED 194 (237)
Q Consensus 156 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~i~E~ 194 (237)
..| .......-..+.+.+.++||+..|+..++.+.
T Consensus 138 ~~w----~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~ 172 (281)
T PF00150_consen 138 ANW----NAQNPADWQDWYQRAIDAIRAADPNHLIIVGG 172 (281)
T ss_dssp TTT----SHHHTHHHHHHHHHHHHHHHHTTSSSEEEEEE
T ss_pred ccc----ccccchhhhhHHHHHHHHHHhcCCcceeecCC
Confidence 011 00011223568889999999999987776666
No 74
>PLN02635 disproportionating enzyme
Probab=96.82 E-value=0.0081 Score=56.49 Aligned_cols=137 Identities=18% Similarity=0.279 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHcCCEEEEEeec--cccCCCc---ccccc--------CCCCCCCCccCCCCCCCCCCCCCCCCCCCCH-
Q psy9004 48 EQLKYLVDECHKAGLYVLLDVVH--SHASKNV---LDGLN--------EFDGTQACFFHDGPRGTHPLWDSRLFNYSEI- 113 (237)
Q Consensus 48 ~~l~~lv~~~H~~Gi~VilD~v~--nh~~~~~---~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p- 113 (237)
.+++++-+.||++||++|-|+.+ ++-|.+. +..+. ..-|..|.+|.... -.|+.+.+|+..-
T Consensus 224 ~Qw~~l~~yA~~~Gi~L~gDlpi~Va~dSaDvWa~~~lF~ld~~g~p~~~aGaPPD~Fs~~G----Q~WG~P~y~w~~l~ 299 (538)
T PLN02635 224 RQWQAVRSYANEKGISIIGDMPIYVGGHSADVWANRKLFLLNKTGFPLLVSGVPPDAFSETG----QLWGSPLYDWKAMA 299 (538)
T ss_pred HHHHHHHHHHHHCCCEEEEEeecccCCCcHHHhcCHHhhcCCCCCCcceeeeCCCCcCCccc----ccCCCcCcCHHHHH
Confidence 67888999999999999999985 4444431 11111 01244556665432 3577777765321
Q ss_pred -HHHHHHHHHHHHHHHhCCCcEEEecccCccccccCCCCC----CCCCCcccccCccCChhHHHHHHHHHHHHHhhCCCe
Q psy9004 114 -EVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGE----GFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEI 188 (237)
Q Consensus 114 -~v~~~i~~~~~~w~~~~giDGfR~D~~~~l~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~ 188 (237)
.--+.+++-++.-++ .+|.+|||.+..+. .-..+|. ...|.|- .-...+++. ++.+..+++
T Consensus 300 ~~gy~ww~~Rlr~~~~--~~d~lRIDHf~Gf~-r~W~IP~g~~ta~~G~wv-------~~Pg~~l~~----~l~~~~~~~ 365 (538)
T PLN02635 300 KDGYSWWAGRMRRALE--LYDEFRIDHFRGFA-GYWAVPADAKTAMNGRWK-------VGPGKSFFD----AIKKAVGKI 365 (538)
T ss_pred hcCcHHHHHHHHHHHH--hCCeEEecchhhhh-eeeeccCCCCCCCCCeee-------eCCHHHHHH----HHHHHcCCC
Confidence 112345566666665 67889999997652 1111221 1123332 222344543 456666789
Q ss_pred EEEEecCCCCCCcc
Q psy9004 189 ITIAEDVSGMPASC 202 (237)
Q Consensus 189 ~~i~E~~~~~~~~~ 202 (237)
.+|||..+.-+...
T Consensus 366 ~vIaEDLG~I~~~V 379 (538)
T PLN02635 366 DIIAEDLGVITEDV 379 (538)
T ss_pred CEEEeeCCCCCHHH
Confidence 99999998876644
No 75
>KOG1065|consensus
Probab=96.80 E-value=0.0059 Score=59.18 Aligned_cols=132 Identities=16% Similarity=0.222 Sum_probs=81.7
Q ss_pred CcCChHHhhHHHHHcCccccCccCCCCCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCCcccccc
Q psy9004 4 NGFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLN 82 (237)
Q Consensus 4 ~~~Gl~~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~ 82 (237)
++.-+.+..+..+++|+..-+.-...++-=.-.||+.- ..|++ ++.+++.+|++|+|+++=+-++-..... ..
T Consensus 309 nls~~~dvv~~~~~agiPld~~~~DiDyMd~ykDFTvd~~~fp~---~~~fv~~Lh~~G~kyvliidP~is~~~~---y~ 382 (805)
T KOG1065|consen 309 NLSVVRDVVENYRAAGIPLDVIVIDIDYMDGYKDFTVDKVWFPD---LKDFVDDLHARGFKYVLIIDPFISTNSS---YG 382 (805)
T ss_pred cHHHHHHHHHHHHHcCCCcceeeeehhhhhcccceeeccccCcc---hHHHHHHHHhCCCeEEEEeCCccccCcc---ch
Confidence 33445667778888887642222222222235677766 78887 8999999999999998776643322221 00
Q ss_pred CC-CCCCCCccCCCCCCC----CCCCC--CCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccC
Q psy9004 83 EF-DGTQACFFHDGPRGT----HPLWD--SRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVT 141 (237)
Q Consensus 83 ~~-~~~~~~~~~~~~~~~----~~~~~--~~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~ 141 (237)
.+ ++.....+.....+. ...|. ..-.|+.||++.....+.++..-++.++||+-+|+-.
T Consensus 383 ~y~~g~~~~v~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww~~~~~~fh~~vp~dg~wiDmnE 448 (805)
T KOG1065|consen 383 PYDRGVAKDVLIKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWWLDELKRFHDEVPFDGFWIDMNE 448 (805)
T ss_pred hhhhhhhhceeeecccCchhhhcccCCCcccccccCCchHHHHHHHHHHhhcccCCccceEEECCC
Confidence 01 111111111111111 12232 3468999999999999999988888999999999854
No 76
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=96.70 E-value=0.0031 Score=61.78 Aligned_cols=95 Identities=18% Similarity=0.294 Sum_probs=64.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCCccccccCCCCCCCCccCCCCCCC---CCCCC--CCCCCCCCHHHH
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGT---HPLWD--SRLFNYSEIEVL 116 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~ln~~~p~v~ 116 (237)
.+|..+ +.|++..|++|||+|+-+.|.-.... +.. .......||...+.+. ...|. ..-+||.||++|
T Consensus 318 ~~FP~p---k~mi~~l~~~Gikl~~~i~P~i~~d~-~~~---~e~~~~Gy~~k~~~g~~~~~~~w~~~~a~~DFtnp~~r 390 (772)
T COG1501 318 DRFPDP---KQMIAELHEKGIKLIVIINPYIKQDS-PLF---KEAIEKGYFVKDPDGEIYQADFWPGNSAFPDFTNPDAR 390 (772)
T ss_pred ccCCCH---HHHHHHHHhcCceEEEEeccccccCC-chH---HHHHHCCeEEECCCCCEeeecccCCcccccCCCCHHHH
Confidence 455555 59999999999999999877544443 111 0111223444333332 23444 567999999999
Q ss_pred HHHHH-HHHHHHHhCCCcEEEecccCccc
Q psy9004 117 RFLLS-NLRWYLEEYQFDGFRFDGVTSML 144 (237)
Q Consensus 117 ~~i~~-~~~~w~~~~giDGfR~D~~~~l~ 144 (237)
+...+ ....+++ +|||||-.|......
T Consensus 391 ~Ww~~~~~~~l~d-~Gv~g~W~D~nEp~~ 418 (772)
T COG1501 391 EWWASDKKKNLLD-LGVDGFWNDMNEPEP 418 (772)
T ss_pred HHHHHHHHhHHHh-cCccEEEccCCCCcc
Confidence 99995 5566777 899999999987653
No 77
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=96.51 E-value=0.015 Score=49.42 Aligned_cols=64 Identities=17% Similarity=0.226 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccCCCccccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy9004 47 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWY 126 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~~w 126 (237)
.+..++.++.+|++|+||++-+--+|.+... ....+++-++.+.+.+..+
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~------------------------------~~~~~~~~~~~fa~~l~~~ 99 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILGNHLGAGF------------------------------ANNLSDAAAKAYAKAIVDT 99 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECCCCCCCCc------------------------------cccCCHHHHHHHHHHHHHH
Confidence 5889999999999999999987665544320 0113456677777788888
Q ss_pred HHhCCCcEEEeccc
Q psy9004 127 LEEYQFDGFRFDGV 140 (237)
Q Consensus 127 ~~~~giDGfR~D~~ 140 (237)
++++|+||+-+|-=
T Consensus 100 v~~yglDGiDiD~E 113 (255)
T cd06542 100 VDKYGLDGVDFDDE 113 (255)
T ss_pred HHHhCCCceEEeee
Confidence 88899999999953
No 78
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=96.49 E-value=0.016 Score=57.96 Aligned_cols=130 Identities=11% Similarity=0.096 Sum_probs=77.9
Q ss_pred cCChHHhhHHHHHcCccc-cCccCCCC-CCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCCccccc
Q psy9004 5 GFGTPEQLKYLVDECHKA-GLFGTPEQ-LKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL 81 (237)
Q Consensus 5 ~~Gl~~~L~yl~~lGv~~-pi~~~~~~-~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~ 81 (237)
.+-|.+.++.+++.+|.. .|+....+ .||. +|+-- .+|.++ ++||+++|++|+|++.-+.+ ++..+. ...
T Consensus 200 q~eV~eva~~fre~~IP~DvIwlDidYm~g~~--~FTwD~~rFPdP---~~mv~~Lh~~G~kvv~iidP-gI~~d~-gY~ 272 (978)
T PLN02763 200 AKRVAEIARTFREKKIPCDVVWMDIDYMDGFR--CFTFDKERFPDP---KGLADDLHSIGFKAIWMLDP-GIKAEE-GYF 272 (978)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEehhhhcCCC--ceeECcccCCCH---HHHHHHHHHCCCEEEEEEcC-CCccCC-CCH
Confidence 345677778888888765 24333222 2343 23333 678765 89999999999999775544 222210 000
Q ss_pred cCCCCCCCCccCCCCCCC---CCCCCC--CCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccCc
Q psy9004 82 NEFDGTQACFFHDGPRGT---HPLWDS--RLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTS 142 (237)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~---~~~~~~--~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~~ 142 (237)
..-.+....+|.....+. ...|.. .-.||.||+++++..+.++.+++ .|||||-+|.-..
T Consensus 273 ~y~eg~~~~~fvk~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~~~~k~l~d-~GVDG~W~DmnEP 337 (978)
T PLN02763 273 VYDSGCENDVWIQTADGKPFVGEVWPGPCVFPDFTNKKTRSWWANLVKDFVS-NGVDGIWNDMNEP 337 (978)
T ss_pred HHHhHhhcCeeEECCCCCeeEeeecCCCccccCCCCHHHHHHHHHHHHHHhc-CCCcEEEccCCCC
Confidence 000111112222111221 123432 34799999999999999998888 8999999998754
No 79
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=96.43 E-value=0.014 Score=50.03 Aligned_cols=94 Identities=17% Similarity=0.133 Sum_probs=63.8
Q ss_pred CcCChHHhhHHHHHcCccccCccCCCCCCCCcccc--ccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCCcccc
Q psy9004 4 NGFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDEC--HKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG 80 (237)
Q Consensus 4 ~~~Gl~~~L~yl~~lGv~~pi~~~~~~~gY~~~d~--~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~ 80 (237)
+.+-|.+.++.+++.|+..-.+-....+.-.-.++ .-- .+|.++ ++||+.+|++|++|++.+.+.-
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~~~~f~~~~d~~~Fpdp---~~~i~~l~~~g~~~~~~~~P~v-------- 90 (265)
T cd06589 22 DQDKVLEVIDGMRENDIPLDGFVLDDDYTDGYGDFTFDWDAGKFPNP---KSMIDELHDNGVKLVLWIDPYI-------- 90 (265)
T ss_pred CHHHHHHHHHHHHHcCCCccEEEECcccccCCceeeeecChhhCCCH---HHHHHHHHHCCCEEEEEeChhH--------
Confidence 44467788888999998652232222222223334 222 577765 7899999999999999865431
Q ss_pred ccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccCcc
Q psy9004 81 LNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSM 143 (237)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~~l 143 (237)
++...+.++..+.+.|||||-+|.....
T Consensus 91 -----------------------------------~~w~~~~~~~~~~~~Gvdg~w~D~~E~~ 118 (265)
T cd06589 91 -----------------------------------REWWAEVVKKLLVSLGVDGFWTDMGEPS 118 (265)
T ss_pred -----------------------------------HHHHHHHHHHhhccCCCCEEeccCCCCC
Confidence 6667777766645589999999988644
No 80
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=96.20 E-value=0.063 Score=47.61 Aligned_cols=146 Identities=18% Similarity=0.176 Sum_probs=77.1
Q ss_pred HHhhHHHHHcCccc---cCccCCCCCCCCcccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCCccccccCCC
Q psy9004 9 PEQLKYLVDECHKA---GLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFD 85 (237)
Q Consensus 9 ~~~L~yl~~lGv~~---pi~~~~~~~gY~~~d~~~v~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~~ 85 (237)
.+-+.-||+.|++. =++..|..- .+-+.+...++.++|++.||+|+||+=+..+-.+
T Consensus 27 ~d~~~ilk~~G~N~vRlRvwv~P~~~-----------g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaD--------- 86 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRVWVNPYDG-----------GYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWAD--------- 86 (332)
T ss_dssp --HHHHHHHTT--EEEEEE-SS-TTT-----------TTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--B---------
T ss_pred CCHHHHHHhcCCCeEEEEeccCCccc-----------ccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCC---------
Confidence 56778899999876 344444321 2336889999999999999999999754332221
Q ss_pred CCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccCccccccCCCCCCCCCCcccccCcc
Q psy9004 86 GTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLN 165 (237)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~ 165 (237)
......+..|....++.-...|.++-.+++..+.+ .|+. .|.+. | .+. +..+.- |. .|..
T Consensus 87 --------Pg~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~-~G~~---pd~VQ-V-GNE--in~Gml--wp--~g~~ 146 (332)
T PF07745_consen 87 --------PGKQNKPAAWANLSFDQLAKAVYDYTKDVLQALKA-AGVT---PDMVQ-V-GNE--INNGML--WP--DGKP 146 (332)
T ss_dssp --------TTB-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHH-TT-----ESEEE-E-SSS--GGGEST--BT--TTCT
T ss_pred --------CCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHH-CCCC---ccEEE-e-Ccc--cccccc--Cc--CCCc
Confidence 11111234565554444456677888888887766 5765 44442 1 000 000000 00 0111
Q ss_pred CC-hhHHHHHHHHHHHHHhhCCCeEEEEec
Q psy9004 166 VD-TDALIYLMVANKFLHDKYPEIITIAED 194 (237)
Q Consensus 166 ~~-~~~~~~~~~~~~~~~~~~p~~~~i~E~ 194 (237)
.+ .....+++.-.++||+..|+..++-=.
T Consensus 147 ~~~~~~a~ll~ag~~AVr~~~p~~kV~lH~ 176 (332)
T PF07745_consen 147 SNWDNLAKLLNAGIKAVREVDPNIKVMLHL 176 (332)
T ss_dssp T-HHHHHHHHHHHHHHHHTHSSTSEEEEEE
T ss_pred cCHHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 12 223568888889999999986655443
No 81
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=96.14 E-value=0.054 Score=52.65 Aligned_cols=141 Identities=16% Similarity=0.153 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHcCC--EEEEEeeccccCCCcccc-----c--cCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHH--HH
Q psy9004 48 EQLKYLVDECHKAGL--YVLLDVVHSHASKNVLDG-----L--NEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIE--VL 116 (237)
Q Consensus 48 ~~l~~lv~~~H~~Gi--~VilD~v~nh~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~--v~ 116 (237)
.+++++.+.|+++|| ++|-|+.+.-......-| + ..--|..|.+|.... -+|+.+-+|+..-. =-
T Consensus 355 ~Ql~~~~~~A~~~Gm~igL~gDLpvgv~~dsaDvWa~~~~F~l~~~~GaPPD~fs~~G----Q~WG~P~y~w~~l~~~gy 430 (695)
T PRK11052 355 SQFAACWQLSQQLGMPIGLYRDLAVGVAEGGAETWCDRELYCLKASVGAPPDILGPLG----QNWGLPPMDPHVLQARAY 430 (695)
T ss_pred HHHHHHHHHHHHCCCceeEEEeeeceECCCcHHHhCCHHHhcCCCcCCCCCCcCCccc----ccCCCcCcCHHHHHhcCc
Confidence 778889999999999 679999874333321111 1 112345566665432 25777766553211 11
Q ss_pred HHHHHHHHHHHHhCCCcEEEecccCccccccCCCCCCC---CCCcccccCccCChhHHHHHHHHHHHHHhhCCCeEEEEe
Q psy9004 117 RFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGF---SGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAE 193 (237)
Q Consensus 117 ~~i~~~~~~w~~~~giDGfR~D~~~~l~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~i~E 193 (237)
..+++.++.-++ .+|++|||.+..+. .-+.+|++. .|.|-.. ...+++..+ ++.+..+++.+|||
T Consensus 431 ~ww~~rlr~~~~--~~g~lRIDH~~Gl~-rlW~IP~g~~a~~G~yv~~-------P~~~ll~~l--ales~~~~~~vIgE 498 (695)
T PRK11052 431 QPFIDLLRANMQ--HCGALRIDHVMSLL-RLWWIPYGETADQGAYVHY-------PVDDLLAIL--ALESQRHRCMVIGE 498 (695)
T ss_pred HHHHHHHHHHHH--hCCEEEecchhhhh-eeeecCCCCCCCCCeeEeC-------CHHHHHHHH--HHHHhcCCCCEEEe
Confidence 345666666666 68899999998652 111222221 1223221 223444433 23566678999999
Q ss_pred cCCCCCCcccc
Q psy9004 194 DVSGMPASCRP 204 (237)
Q Consensus 194 ~~~~~~~~~~~ 204 (237)
..+.-+...+.
T Consensus 499 DLG~Vp~~Vr~ 509 (695)
T PRK11052 499 DLGTVPVEIVG 509 (695)
T ss_pred eCCCCCHHHHH
Confidence 99887765543
No 82
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=96.08 E-value=0.073 Score=50.01 Aligned_cols=139 Identities=13% Similarity=0.185 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHcCCEEEEEeeccccCCCc-----cccc-------cC-CCCCCCCccCCCCCCCCCCCCCCCCCCCCHH
Q psy9004 48 EQLKYLVDECHKAGLYVLLDVVHSHASKNV-----LDGL-------NE-FDGTQACFFHDGPRGTHPLWDSRLFNYSEIE 114 (237)
Q Consensus 48 ~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~-----~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~ 114 (237)
.+++++-+.|+.+||++|-|+.+.-..... +..+ .+ .++-.|.+|.... -.|+.+-+|+..-.
T Consensus 212 ~Q~~~l~~yA~~~~I~L~gDlpi~v~~dsaDvWa~~~~F~l~~~~GaP~~agvpPd~Fs~~G----Q~WG~P~y~w~~l~ 287 (513)
T TIGR00217 212 SQFQALKRYANDMGIGLYGDLPVFVAYDSADVWADPELFCLRASAGAPKPAGLGPDYFLEQG----QNWGLPPYDWNVLK 287 (513)
T ss_pred HHHHHHHHHHhcCCcEEEEeCcceeCCCcHHHHhCHHHhCCCcccCCCCCCCCCCCcccccC----CCCCCCCcCHHHHH
Confidence 678888889999999999999875433321 1111 01 2222355555432 35777777663211
Q ss_pred --HHHHHHHHHHHHHHhCCCcEEEecccCccccccCCCCC----CCCCCcccccCccCChhHHHHHHHHHHHHHhhCCC-
Q psy9004 115 --VLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGE----GFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPE- 187 (237)
Q Consensus 115 --v~~~i~~~~~~w~~~~giDGfR~D~~~~l~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~- 187 (237)
=-+.+++.++.-++ .+|++|||.+..+.. -..+|. ...|.|- .-...++++.+. ...+.
T Consensus 288 ~~gy~ww~~rlr~~~~--~~d~lRIDHf~Gf~r-~w~IP~g~~ta~~G~wv-------~~Pg~~l~~~l~----~e~~~~ 353 (513)
T TIGR00217 288 ARGYEWWIKRLGANMQ--YADILRIDHFRGFVS-LWWVPAGESTAFNGAWV-------HYPGDDFFNILA----NESKDN 353 (513)
T ss_pred hcCcHHHHHHHHHHHH--hCCeEEecchhhhce-eeeecCCCCCCCCCeeE-------eCCHHHHHHHHH----HHcCCC
Confidence 11345666666666 678899999986521 111221 1123332 223345555444 33344
Q ss_pred eEEEEecCCCCCCcccc
Q psy9004 188 IITIAEDVSGMPASCRP 204 (237)
Q Consensus 188 ~~~i~E~~~~~~~~~~~ 204 (237)
+.+|||..+.-+...+.
T Consensus 354 ~~vIaEDLG~v~~~Vr~ 370 (513)
T TIGR00217 354 LKIIGEDLGTVPEEVSR 370 (513)
T ss_pred CcEEeeeCCCCCHHHHH
Confidence 89999999887665543
No 83
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=95.82 E-value=0.01 Score=55.57 Aligned_cols=143 Identities=17% Similarity=0.250 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHcCCEEEEEeeccccCCCc-----cccc--cCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHH--HHH
Q psy9004 48 EQLKYLVDECHKAGLYVLLDVVHSHASKNV-----LDGL--NEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEV--LRF 118 (237)
Q Consensus 48 ~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v--~~~ 118 (237)
.+++++.+.|+++||+||.|+.+.-..... +..+ ..--|..|.+|.... -.|+.+-+|+..-.- -+.
T Consensus 192 ~Q~~~~~~~A~~~gI~L~gDlpigv~~dsaDvW~~~~lF~~~~~aGaPPD~fs~~G----Q~WG~P~y~w~~l~~~gy~w 267 (496)
T PF02446_consen 192 KQWKAAKEYAREMGIGLIGDLPIGVSPDSADVWANPELFLLDASAGAPPDYFSPTG----QNWGNPPYNWDALKEDGYRW 267 (496)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEESS--SSSHHHHH-GGGB-B-EEEEE-SSSSSSS-----EEEEEE-B-HHHHHHTTTHH
T ss_pred HHHHHHHHHHHHCCCEEEEeccceECCCcHHHHhCHHHHhCcCeeCCCCCCCCccc----ccCCCCCcCHHHHHHcCCHH
Confidence 788999999999999999999875443321 1111 111233455554321 246666565422111 134
Q ss_pred HHHHHHHHHHhCCCcEEEecccCccccccCCCCC-CCCCCcccccCccCChhHHHHHHHHHHHHHhhCC-CeEEEEecCC
Q psy9004 119 LLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGE-GFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYP-EIITIAEDVS 196 (237)
Q Consensus 119 i~~~~~~w~~~~giDGfR~D~~~~l~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p-~~~~i~E~~~ 196 (237)
+++-+++-++ .+|++|||.+..+. .-..+|. +.. ..-|.-+.-...++++.+... .+ ++.+|||..+
T Consensus 268 w~~rl~~~~~--~~d~lRIDH~~Gf~-r~W~IP~~~~~----a~~G~~~~~p~~~ll~~l~~e----~~r~~~vigEDLG 336 (496)
T PF02446_consen 268 WIDRLRANMR--LFDALRIDHFRGFF-RYWWIPAGGET----AIDGAWVRYPGEDLLAILALE----SGRDCLVIGEDLG 336 (496)
T ss_dssp HHHHHHHHHC--C-SEEEEETGGGGT-EEEEEETT-SS----STT-EEEE--HHHHHHHHHHH----HS-S-EEEE--TS
T ss_pred HHHHHHHHHH--hCCchHHHHHHHHH-heeEecCCCCC----CCCceeecchHHHHHHHHHHH----cCCCCcEEEeecC
Confidence 5555555554 78999999998663 1111222 111 111111222234555555433 34 8999999998
Q ss_pred CCCCccccc
Q psy9004 197 GMPASCRPV 205 (237)
Q Consensus 197 ~~~~~~~~~ 205 (237)
.-+..++..
T Consensus 337 ~vp~~v~~~ 345 (496)
T PF02446_consen 337 TVPPEVREL 345 (496)
T ss_dssp S--HHHHHH
T ss_pred CCcHHHHHH
Confidence 876655443
No 84
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=95.77 E-value=0.11 Score=44.20 Aligned_cols=87 Identities=16% Similarity=0.284 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccCCCccccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy9004 47 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWY 126 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~~w 126 (237)
..++..++++||++|+||++-+- ++.... +. --..+|+.|+.+++.+..+
T Consensus 45 ~~~~~~~~~~~~~~~~kvl~sig-g~~~~~---------------~~--------------~~~~~~~~r~~fi~~lv~~ 94 (253)
T cd06545 45 RSELNSVVNAAHAHNVKILISLA-GGSPPE---------------FT--------------AALNDPAKRKALVDKIINY 94 (253)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEc-CCCCCc---------------ch--------------hhhcCHHHHHHHHHHHHHH
Confidence 46789999999999999998653 211000 00 0225789999999998888
Q ss_pred HHhCCCcEEEecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhh
Q psy9004 127 LEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDK 184 (237)
Q Consensus 127 ~~~~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 184 (237)
++++|+||+-||-=..- . .......|++++++.+++.
T Consensus 95 ~~~~~~DGIdiDwE~~~--------------------~-~~~~~~~fv~~Lr~~l~~~ 131 (253)
T cd06545 95 VVSYNLDGIDVDLEGPD--------------------V-TFGDYLVFIRALYAALKKE 131 (253)
T ss_pred HHHhCCCceeEEeeccC--------------------c-cHhHHHHHHHHHHHHHhhc
Confidence 98899999999964311 0 0112457899999988764
No 85
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=95.62 E-value=0.12 Score=46.10 Aligned_cols=81 Identities=19% Similarity=0.183 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEe-eccccCCCccccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDV-VHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLR 124 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~-v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~ 124 (237)
|.+|++++|+-|.++||.||..+ +|.|+..-..............|-.. + ..-....||..+|++.+++.+++.
T Consensus 68 T~~di~eiv~yA~~rgI~vIPEID~PGH~~a~~~~~p~l~~~~~~~~~~~---~--~~~~~~~L~~~~~~t~~fl~~vl~ 142 (348)
T cd06562 68 TPEDVKEIVEYARLRGIRVIPEIDTPGHTGSWGQGYPELLTGCYAVWRKY---C--PEPPCGQLNPTNPKTYDFLKTLFK 142 (348)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccCchhhHHHHHhChhhhCCCCcccccc---c--cCCCCccccCCChhHHHHHHHHHH
Confidence 89999999999999999999988 57888653110000000000001000 0 001223599999999999999999
Q ss_pred HHHHhCC
Q psy9004 125 WYLEEYQ 131 (237)
Q Consensus 125 ~w~~~~g 131 (237)
..++-+.
T Consensus 143 E~~~lF~ 149 (348)
T cd06562 143 EVSELFP 149 (348)
T ss_pred HHHHhcC
Confidence 9998654
No 86
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=95.53 E-value=0.08 Score=54.72 Aligned_cols=141 Identities=16% Similarity=0.200 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHcCCEE--EEEeeccccCCCcccc-------ccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHH--HH
Q psy9004 48 EQLKYLVDECHKAGLYV--LLDVVHSHASKNVLDG-------LNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIE--VL 116 (237)
Q Consensus 48 ~~l~~lv~~~H~~Gi~V--ilD~v~nh~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~--v~ 116 (237)
.+++++-+.|+++||+| |-|+.+.-......-| +..--|..|.+|.... -.|+.+-+|+..-. --
T Consensus 932 ~Q~~~~~~~A~~~Gm~iGl~gDLpvgv~~dsadvWa~~~~f~l~~~~GaPPD~fs~~G----Q~WG~P~y~w~~l~~~gy 1007 (1221)
T PRK14510 932 RQWQAAKDYAQEQGLSIGFYGDLAIGVAPDGADAWAERSCFALDVSIGAPPDYFNPEG----QNWGLPPYDPRALRRDGY 1007 (1221)
T ss_pred HHHHHHHHHHHHCCCEEeEEeeeeeeeCCCcHHHhcCHHHhcCCCccCCCCCcCCccc----ccCCCcCcCHHHHHhcCc
Confidence 67889999999999999 9999875443321111 1122345566665432 36777777653211 11
Q ss_pred HHHHHHHHHHHHhCCCcEEEecccCccccccCCCCCCC---CCCcccccCccCChhHHHHHHHHHHHHHhhCCCeEEEEe
Q psy9004 117 RFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGF---SGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAE 193 (237)
Q Consensus 117 ~~i~~~~~~w~~~~giDGfR~D~~~~l~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~i~E 193 (237)
+.+++.++.-++ .+|++|||.+..+.. -..+|++. .+.|-. -...++++.+.... ...++.+|||
T Consensus 1008 ~~w~~rlr~~~~--~~~~lRIDH~~G~~r-~W~IP~~~~a~~G~~v~-------~P~~~l~~~l~~e~--~r~~~~vIgE 1075 (1221)
T PRK14510 1008 RWFIERIRANMR--HAGALRIDHVRGLER-LFEVPQGASAKEGAYLK-------GPGEELFGQVALES--QRAQCPVIGE 1075 (1221)
T ss_pred HHHHHHHHHHHH--hCCeEEeccHHhhHH-heeCCCCCCCCCCeEEE-------CCHHHHHHHHHHHh--CccCCcEEEe
Confidence 356666766666 788899999986521 11122111 122322 12345555554322 1237999999
Q ss_pred cCCCCCCcccc
Q psy9004 194 DVSGMPASCRP 204 (237)
Q Consensus 194 ~~~~~~~~~~~ 204 (237)
..+.-+...+.
T Consensus 1076 DLG~vp~~v~~ 1086 (1221)
T PRK14510 1076 DLGTIPSGVRE 1086 (1221)
T ss_pred eCCcCCHHHHH
Confidence 99887765543
No 87
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=95.32 E-value=0.056 Score=51.63 Aligned_cols=83 Identities=20% Similarity=0.237 Sum_probs=51.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH---------hCCCcEEEecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHH
Q psy9004 106 RLFNYSEIEVLRFLLSNLRWYLE---------EYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMV 176 (237)
Q Consensus 106 ~~ln~~~p~v~~~i~~~~~~w~~---------~~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 176 (237)
.|+|-+||.|+.+-+.|+-+++. ...+||||+||+.++. .++|+-
T Consensus 144 NDVDNSNPvVQAEqLNwl~yLmN~GsI~~~d~daNFDgiRVDAvDNVd--------------------------ADlLqi 197 (809)
T PF02324_consen 144 NDVDNSNPVVQAEQLNWLHYLMNFGSITANDPDANFDGIRVDAVDNVD--------------------------ADLLQI 197 (809)
T ss_dssp EEE-TTSHHHHHHHHHHHHHHHTHHHHHHS-TTSS--EEEETTGGGS---------------------------THHHHH
T ss_pred ccccCCCchhhHHHHHHHHHHhhccccccCCCCCCcccEEeecccccC--------------------------HHHHHH
Confidence 47889999999999999999986 5789999999999881 234444
Q ss_pred HHHHHHh---hCC------CeEEEEecCCCC-CCcccccccCCccccc
Q psy9004 177 ANKFLHD---KYP------EIITIAEDVSGM-PASCRPVTEGGTGFDY 214 (237)
Q Consensus 177 ~~~~~~~---~~p------~~~~i~E~~~~~-~~~~~~~~~~~~gfd~ 214 (237)
....+++ +.. .-+-|-|.|+.. +.+....+...+-+|.
T Consensus 198 a~dyfkaaYgv~~~~a~An~HlSilE~ws~nd~~y~~~~g~~qL~mD~ 245 (809)
T PF02324_consen 198 AGDYFKAAYGVDKNDANANKHLSILEAWSSNDPDYVKDTGNPQLTMDN 245 (809)
T ss_dssp HHHHHHHHH-TTTBHHHHCTC--EESSSTTTHHHHHHHTTSSSBEEEH
T ss_pred HHHHHHHHhCCCcChhhHhhhheeeeccccCChHHHhcCCCceeeecH
Confidence 4444433 322 567888999875 4444443333333333
No 88
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=95.18 E-value=0.073 Score=46.59 Aligned_cols=77 Identities=17% Similarity=0.136 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEe-eccccCCCccccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDV-VHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLR 124 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~-v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~ 124 (237)
|.+|++++|+-|.++||.||-.+ +|.|+..--... ..... .. +. +....-....||..+|++.+++.+.+.
T Consensus 70 T~~di~elv~yA~~rgI~viPEiD~PGH~~a~~~~~-p~l~~--~~-~~----~~~~~~~~~~l~~~~~~t~~fl~~l~~ 141 (303)
T cd02742 70 TYAQLKDIIEYAAARGIEVIPEIDMPGHSTAFVKSF-PKLLT--EC-YA----GLKLRDVFDPLDPTLPKGYDFLDDLFG 141 (303)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccchHHHHHHHHhC-HHhcc--Cc-cc----cCCCCCCCCccCCCCccHHHHHHHHHH
Confidence 68999999999999999999988 478886521100 00000 00 00 000001123699999999999999999
Q ss_pred HHHHhC
Q psy9004 125 WYLEEY 130 (237)
Q Consensus 125 ~w~~~~ 130 (237)
.+++-+
T Consensus 142 e~~~lf 147 (303)
T cd02742 142 EIAELF 147 (303)
T ss_pred HHHHhC
Confidence 999854
No 89
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.03 E-value=0.3 Score=42.46 Aligned_cols=142 Identities=19% Similarity=0.240 Sum_probs=79.3
Q ss_pred HhhHHHHHcCccc---cCccCCCCCCCCccccccc-CCC-CC---HHHHHHHHHHHHHcCCEEEEEeeccccCCCccccc
Q psy9004 10 EQLKYLVDECHKA---GLFGTPEQLKYLVDECHKA-GLF-GT---PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL 81 (237)
Q Consensus 10 ~~L~yl~~lGv~~---pi~~~~~~~gY~~~d~~~v-~~~-Gt---~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~ 81 (237)
+.+.-||..||+- -+|..| |+ .- ..| |+ .+...++.++|+..||||++|+ |-|.-
T Consensus 67 D~~~iLK~~GvNyvRlRvwndP----~d-----sngn~yggGnnD~~k~ieiakRAk~~GmKVl~dF---HYSDf----- 129 (403)
T COG3867 67 DALQILKNHGVNYVRLRVWNDP----YD-----SNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDF---HYSDF----- 129 (403)
T ss_pred HHHHHHHHcCcCeEEEEEecCC----cc-----CCCCccCCCcchHHHHHHHHHHHHhcCcEEEeec---cchhh-----
Confidence 4567788888764 345444 11 11 222 33 3444566778889999999996 33321
Q ss_pred cCCCCCCCCccCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccCccccc-cCCC--CCCCCCC
Q psy9004 82 NEFDGTQACFFHD-GPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYH-NHGC--GEGFSGH 157 (237)
Q Consensus 82 ~~~~~~~~~~~~~-~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~~l~~~-~~~~--~~~~~~~ 157 (237)
|.+ .....+..|....++.-..+|.++-..++....++ ||+ .|.+. +--+ ..+. |++-.++
T Consensus 130 ----------waDPakQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~e-Gi~---pdmVQ-VGNEtn~gflwp~Ge~~~ 194 (403)
T COG3867 130 ----------WADPAKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKKE-GIL---PDMVQ-VGNETNGGFLWPDGEGRN 194 (403)
T ss_pred ----------ccChhhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHc-CCC---ccceE-eccccCCceeccCCCCcC
Confidence 111 11123345666556666678888888889888885 665 44443 1000 0010 1111112
Q ss_pred cccccCccCChhHHHHHHHHHHHHHhhCCCeEEEE
Q psy9004 158 YDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIA 192 (237)
Q Consensus 158 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~i~ 192 (237)
|. .-..++.+-..++|++.|+..++-
T Consensus 195 f~---------k~a~L~n~g~~avrev~p~ikv~l 220 (403)
T COG3867 195 FD---------KMAALLNAGIRAVREVSPTIKVAL 220 (403)
T ss_pred hH---------HHHHHHHHHhhhhhhcCCCceEEE
Confidence 21 224677888888999999765543
No 90
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=94.86 E-value=0.21 Score=52.81 Aligned_cols=141 Identities=19% Similarity=0.145 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHcC--CEEEEEeeccccCCCcccc-------ccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHH--HH
Q psy9004 48 EQLKYLVDECHKAG--LYVLLDVVHSHASKNVLDG-------LNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIE--VL 116 (237)
Q Consensus 48 ~~l~~lv~~~H~~G--i~VilD~v~nh~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~--v~ 116 (237)
.+++++-+.|+++| |++|-|+.+.-......-| ...--|..|.+|.... -+|+.+-+|+..-+ =-
T Consensus 386 ~Ql~~~~~~A~~~GM~IgLigDLpVgV~~dsADvWa~p~lF~l~~~aGAPPD~Fs~~G----Q~WG~P~y~p~~L~~~gY 461 (1693)
T PRK14507 386 LQLAAAGERAQALGMRLGLYRDLAVGVDRGGSETWSHPELFANGASIGAPPDELNPKG----QDWGLPPFDPLELERDGY 461 (1693)
T ss_pred HHHHHHHHHHHhCCCeEEEEEeeeceECCCcHHHhcCHhhhhcCCccCCCCCcCcccc----ccCCCcCcCHHHHHhcCh
Confidence 77888999999999 6889999875433321111 1122345566665432 35777766653211 12
Q ss_pred HHHHHHHHHHHHhCCCcEEEecccCccccccCCCCCCC---CCCcccccCccCChhHHHHHHHHHHHHHhhCCCeEEEEe
Q psy9004 117 RFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGF---SGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAE 193 (237)
Q Consensus 117 ~~i~~~~~~w~~~~giDGfR~D~~~~l~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~i~E 193 (237)
..+++.++.-++ .+|++|||.+..+. .-+.+|.+. .|.| +.-...+++..+. +.+..+++.+|||
T Consensus 462 ~ww~~rlr~~m~--~~g~lRIDH~lGl~-RlW~IP~g~ta~~G~y-------v~yP~~~ll~~la--LEs~r~~~~VIgE 529 (1693)
T PRK14507 462 APFRALLRANMR--HAGALRIDHVMQLM-RLFWIPLGRSAREGAY-------VAYPFEPMLAVLA--LESHRNRCLVIGE 529 (1693)
T ss_pred HHHHHHHHHHHH--HCCEEEeccHHhhh-HhcccCCCCCCCCCeE-------EECCHHHHHHHHH--HHHhcCCCeEEEe
Confidence 345666666666 58999999997652 111222221 1222 2222344544332 2456678999999
Q ss_pred cCCCCCCcccc
Q psy9004 194 DVSGMPASCRP 204 (237)
Q Consensus 194 ~~~~~~~~~~~ 204 (237)
..+.-+...+.
T Consensus 530 DLGtVp~~Vr~ 540 (1693)
T PRK14507 530 DLGTVPEGFRD 540 (1693)
T ss_pred cCCCCCHHHHH
Confidence 99887665543
No 91
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=94.71 E-value=0.19 Score=44.07 Aligned_cols=62 Identities=21% Similarity=0.360 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccCCCccccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRW 125 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~~ 125 (237)
+.+++++-|+.||++|+|||+-+ +.. . + .....+++-++.+.+.+..
T Consensus 58 ~~~~~~~~i~~~q~~G~KVllSi-----GG~-----~---~--------------------~~~~~~~~~~~~fa~sl~~ 104 (312)
T cd02871 58 SPAEFKADIKALQAKGKKVLISI-----GGA-----N---G--------------------HVDLNHTAQEDNFVDSIVA 104 (312)
T ss_pred ChHHHHHHHHHHHHCCCEEEEEE-----eCC-----C---C--------------------ccccCCHHHHHHHHHHHHH
Confidence 46789999999999999999875 111 0 0 0113467888889999989
Q ss_pred HHHhCCCcEEEeccc
Q psy9004 126 YLEEYQFDGFRFDGV 140 (237)
Q Consensus 126 w~~~~giDGfR~D~~ 140 (237)
+++++|+||+-||-=
T Consensus 105 ~~~~~g~DGiDiD~E 119 (312)
T cd02871 105 IIKEYGFDGLDIDLE 119 (312)
T ss_pred HHHHhCCCeEEEecc
Confidence 999999999999864
No 92
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=94.70 E-value=0.18 Score=44.61 Aligned_cols=75 Identities=16% Similarity=0.290 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEe-eccccCCCccccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDV-VHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLR 124 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~-v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~ 124 (237)
|.+|++++|+-|.++||.||-.+ +|.|+..-- ..+ +. +.... .........||.++|++.+++.+++.
T Consensus 80 T~~di~eiv~yA~~rgI~vIPEID~PGH~~a~~----~~~----pe-l~~~~--~~~~~~~~~l~~~~~~t~~f~~~l~~ 148 (326)
T cd06564 80 TKEEFKELIAYAKDRGVNIIPEIDSPGHSLAFT----KAM----PE-LGLKN--PFSKYDKDTLDISNPEAVKFVKALFD 148 (326)
T ss_pred cHHHHHHHHHHHHHcCCeEeccCCCcHHHHHHH----Hhh----HH-hcCCC--cccCCCcccccCCCHHHHHHHHHHHH
Confidence 79999999999999999999887 478876521 000 00 00000 00111234689999999999999999
Q ss_pred HHHHhCC
Q psy9004 125 WYLEEYQ 131 (237)
Q Consensus 125 ~w~~~~g 131 (237)
..++-+.
T Consensus 149 E~~~~f~ 155 (326)
T cd06564 149 EYLDGFN 155 (326)
T ss_pred HHHHhcC
Confidence 9998654
No 93
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=94.39 E-value=0.089 Score=42.01 Aligned_cols=63 Identities=10% Similarity=0.104 Sum_probs=44.1
Q ss_pred HHhhHHHHHcCccccCccCCCCCC--CCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q psy9004 9 PEQLKYLVDECHKAGLFGTPEQLK--YLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHS 71 (237)
Q Consensus 9 ~~~L~yl~~lGv~~pi~~~~~~~g--Y~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~n 71 (237)
.+.+.+++++|+++-|..-..+.+ +.|+.+..- -..+..+-+..+.++|.+.||+|++-+-++
T Consensus 23 ~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~ 88 (166)
T PF14488_consen 23 REEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFD 88 (166)
T ss_pred HHHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCC
Confidence 357889999999984444333333 335555222 333678899999999999999999986655
No 94
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=94.29 E-value=0.37 Score=42.72 Aligned_cols=77 Identities=16% Similarity=0.157 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEe-eccccCCCc---cccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDV-VHSHASKNV---LDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLS 121 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~-v~nh~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~ 121 (237)
|.+|+++||+-|.++||.||-.+ +|.|+..-- +. +.+ .+.....+. ........||..+|++.+++.+
T Consensus 73 T~~di~elv~yA~~rgI~vIPEiD~PGH~~a~~~~~p~-l~~-~~~~~~~~~------~~~~~~~~l~~~~~~t~~fl~~ 144 (329)
T cd06568 73 TQEDYKDIVAYAAERHITVVPEIDMPGHTNAALAAYPE-LNC-DGKAKPLYT------GIEVGFSSLDVDKPTTYEFVDD 144 (329)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCcHHHHHHHHhChh-hcc-CCCCCcccc------ccCCCCcccCCCCHHHHHHHHH
Confidence 79999999999999999999888 478876421 11 111 000011110 0011234689999999999999
Q ss_pred HHHHHHHhC
Q psy9004 122 NLRWYLEEY 130 (237)
Q Consensus 122 ~~~~w~~~~ 130 (237)
++...++-+
T Consensus 145 v~~E~~~~f 153 (329)
T cd06568 145 VFRELAALT 153 (329)
T ss_pred HHHHHHHhC
Confidence 999988743
No 95
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=94.28 E-value=0.07 Score=47.83 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccc
Q psy9004 47 PEQLKYLVDECHKAGLYVLLDVVHSHA 73 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~VilD~v~nh~ 73 (237)
.+.|++|++.||+.||+||+|+.+.-.
T Consensus 46 ~~~~~~l~~~a~~~~~~v~~Disp~~l 72 (357)
T PF05913_consen 46 LERLKELLKLAKELGMEVIADISPKVL 72 (357)
T ss_dssp HHHHHHHHHHHHHCT-EEEEEE-CCHH
T ss_pred HHHHHHHHHHHHHCCCEEEEECCHHHH
Confidence 578999999999999999999876533
No 96
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=93.97 E-value=1.3 Score=40.20 Aligned_cols=139 Identities=16% Similarity=0.074 Sum_probs=77.4
Q ss_pred HhhHHHHHcCccccCccCCCCCCC-----Cccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCCccccccC
Q psy9004 10 EQLKYLVDECHKAGLFGTPEQLKY-----LVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNE 83 (237)
Q Consensus 10 ~~L~yl~~lGv~~pi~~~~~~~gY-----~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~ 83 (237)
+-++-+|+.|..--++.+-.-.|| ..++|..+ ... ..+-+++|++||+++||++-+= |...+ +.
T Consensus 85 ~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~p-krDiv~el~~A~rk~Glk~G~Y----~S~~D---W~-- 154 (384)
T smart00812 85 EWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGP-KRDLVGELADAVRKRGLKFGLY----HSLFD---WF-- 154 (384)
T ss_pred HHHHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCC-CcchHHHHHHHHHHcCCeEEEE----cCHHH---hC--
Confidence 345667778854322222211222 13345555 333 5688999999999999999882 22222 10
Q ss_pred CCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHH---HHHHHHHHHhCCCcEEEecccCccccccCCCCCCCCCCccc
Q psy9004 84 FDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFL---LSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDE 160 (237)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i---~~~~~~w~~~~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~ 160 (237)
++.|... +.........+...+++ ..-++.+++.||-|.+=+|.+..-
T Consensus 155 ----~p~y~~~--------~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~~~~----------------- 205 (384)
T smart00812 155 ----NPLYAGP--------TSSDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGGWEA----------------- 205 (384)
T ss_pred ----CCccccc--------cccccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCC-----------------
Confidence 1222110 00001122345566677 788888999999999999976311
Q ss_pred ccCccCChhHHHHHHHHHHHHHhhCCCe--EEEEec
Q psy9004 161 YFGLNVDTDALIYLMVANKFLHDKYPEI--ITIAED 194 (237)
Q Consensus 161 ~~g~~~~~~~~~~~~~~~~~~~~~~p~~--~~i~E~ 194 (237)
. ...--++++.+.+++..|++ .+|..-
T Consensus 206 ------~-~~~~~~~~l~~~~~~~qP~~~~vvvn~R 234 (384)
T smart00812 206 ------P-DDYWRSKEFLAWLYNLSPVKDTVVVNDR 234 (384)
T ss_pred ------c-cchhcHHHHHHHHHHhCCCCceEEEEcc
Confidence 0 00012456777778888887 555433
No 97
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=93.88 E-value=0.15 Score=45.40 Aligned_cols=97 Identities=16% Similarity=0.231 Sum_probs=58.8
Q ss_pred HHHHHHHHHcCCEEEEEeeccccCCCccccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhC
Q psy9004 51 KYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEY 130 (237)
Q Consensus 51 ~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~~w~~~~ 130 (237)
...+++||++|++|+-=+.+...+.. .+.+. -| -.+++.+..+.+.|...++.+
T Consensus 49 ~~~idaAHknGV~Vlgti~~e~~~~~-------------~~~~~------------lL-~~~~~~~~~~a~kLv~lak~y 102 (339)
T cd06547 49 ADWINAAHRNGVPVLGTFIFEWTGQV-------------EWLED------------FL-KKDEDGSFPVADKLVEVAKYY 102 (339)
T ss_pred cHHHHHHHhcCCeEEEEEEecCCCch-------------HHHHH------------Hh-ccCcccchHHHHHHHHHHHHh
Confidence 46788999999999986654432110 01000 01 011444556666777777789
Q ss_pred CCcEEEecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhhCCCeEEE
Q psy9004 131 QFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITI 191 (237)
Q Consensus 131 giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~i 191 (237)
|+||+-++.=.... + ...-..-..|++++++.+++..|+..+|
T Consensus 103 GfDGw~iN~E~~~~------------~------~~~~~~l~~F~~~L~~~~~~~~~~~~v~ 145 (339)
T cd06547 103 GFDGWLINIETELG------------D------AEKAKRLIAFLRYLKAKLHENVPGSLVI 145 (339)
T ss_pred CCCceEeeeeccCC------------c------HHHHHHHHHHHHHHHHHHhhcCCCcEEE
Confidence 99999998653220 0 0001233679999999999888876654
No 98
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=93.88 E-value=0.59 Score=40.20 Aligned_cols=130 Identities=18% Similarity=0.232 Sum_probs=80.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccCCCccccccCCCCCCCCccCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHH
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDS-RLFNYSEIEVLRFLLSNLR 124 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ln~~~p~v~~~i~~~~~ 124 (237)
+.++++.+ .+.|.++|.=+.+.-...-..-+........|.|... ..+.|.+ ....|-.|+-++.+.+.+.
T Consensus 62 ~~eelr~~----~~gg~~pIAYlsIg~ae~yR~Ywd~~w~~~~p~wLg~----edP~W~Gny~VkYW~~eWkdii~~~l~ 133 (300)
T COG2342 62 TIEELRTK----ADGGVKPIAYLSIGEAESYRFYWDKYWLTGRPDWLGE----EDPEWPGNYAVKYWEPEWKDIIRSYLD 133 (300)
T ss_pred cHHHHHHH----hcCCeeEEEEEechhhhhhhhHhhhhhhcCCcccccC----CCCCCCCCceeeccCHHHHHHHHHHHH
Confidence 36777755 4567888877777655443211112222223444322 3345654 4678889999999999999
Q ss_pred HHHHhCCCcEEEecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhhCCCeEEEEe
Q psy9004 125 WYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAE 193 (237)
Q Consensus 125 ~w~~~~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~i~E 193 (237)
..++ .|+||.-+|.+..--|... ..+.-+......-..|..++.+.+|..+|.+.+|-.
T Consensus 134 rL~d-~GfdGvyLD~VD~y~Y~~~---------~~~~~~~~~~k~m~~~i~~i~~~~ra~~~~~~Vi~q 192 (300)
T COG2342 134 RLID-QGFDGVYLDVVDAYWYVEW---------NDRETGVNAAKKMVKFIAAIAEYARAANPLFRVIPQ 192 (300)
T ss_pred HHHH-ccCceEEEeeechHHHHHH---------hcccccccHHHHHHHHHHHHHHHHHhcCCcEEEEec
Confidence 9998 7999999999864311100 000001111233467899999999999999777754
No 99
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=93.87 E-value=0.21 Score=43.91 Aligned_cols=78 Identities=22% Similarity=0.291 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEe-eccccCCCccccccCCCCCCCCccCCCCCCCCCCCC--CCCCCCCCHHHHHHHHHH
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDV-VHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWD--SRLFNYSEIEVLRFLLSN 122 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~-v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ln~~~p~v~~~i~~~ 122 (237)
|.+|++++|+-|.++||+||-.+ +|.|+..--.. ...+....... .....|+ ...||..+|++.+++.++
T Consensus 66 T~~di~elv~yA~~rgI~vIPEId~PGH~~a~~~~-ypel~~~~~~~------~~~~~~~~~~~~l~~~~p~t~~f~~~l 138 (311)
T cd06570 66 TQEQIREVVAYARDRGIRVVPEIDVPGHASAIAVA-YPELASGPGPY------VIERGWGVFEPLLDPTNEETYTFLDNL 138 (311)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeecCccchHHHHHh-CHHhccCCCcc------ccccccccCCCccCCCChhHHHHHHHH
Confidence 78999999999999999999888 47888652110 00000000000 0011222 236999999999999999
Q ss_pred HHHHHHhC
Q psy9004 123 LRWYLEEY 130 (237)
Q Consensus 123 ~~~w~~~~ 130 (237)
+..+++-|
T Consensus 139 ~~E~~~lF 146 (311)
T cd06570 139 FGEMAELF 146 (311)
T ss_pred HHHHHHhC
Confidence 99999854
No 100
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=93.87 E-value=0.4 Score=41.88 Aligned_cols=90 Identities=20% Similarity=0.227 Sum_probs=58.5
Q ss_pred HHHHHHHHHHcCCEEEEEeeccccCCCccccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q psy9004 50 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEE 129 (237)
Q Consensus 50 l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~~w~~~ 129 (237)
..++++.||++|+||++=+.- ..... ++ ...+ .-=.++|+.|+.+++.+..++++
T Consensus 47 ~~~~~~~a~~~~~kv~~~i~~-~~~~~-------~~---~~~~--------------~~~l~~~~~r~~fi~~iv~~l~~ 101 (313)
T cd02874 47 DERLIEAAKRRGVKPLLVITN-LTNGN-------FD---SELA--------------HAVLSNPEARQRLINNILALAKK 101 (313)
T ss_pred CHHHHHHHHHCCCeEEEEEec-CCCCC-------CC---HHHH--------------HHHhcCHHHHHHHHHHHHHHHHH
Confidence 368999999999999976532 11100 00 0000 01124788999999999888988
Q ss_pred CCCcEEEecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhh
Q psy9004 130 YQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDK 184 (237)
Q Consensus 130 ~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 184 (237)
+|+||+-+|--. +. ......-..|+++++.++++.
T Consensus 102 ~~~DGidiDwE~-~~-------------------~~d~~~~~~fl~~lr~~l~~~ 136 (313)
T cd02874 102 YGYDGVNIDFEN-VP-------------------PEDREAYTQFLRELSDRLHPA 136 (313)
T ss_pred hCCCcEEEeccc-CC-------------------HHHHHHHHHHHHHHHHHhhhc
Confidence 999999999642 20 000123467999999988754
No 101
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=93.86 E-value=0.31 Score=43.65 Aligned_cols=80 Identities=19% Similarity=0.157 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEe-eccccCCCccccccCCCCCC-CCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDV-VHSHASKNVLDGLNEFDGTQ-ACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNL 123 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~-v~nh~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~ 123 (237)
|.+|++++|+-|.++||+||-.+ +|.|+..--.. ...+.... ...+.. ........||..+|++.+++.+++
T Consensus 84 T~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~~-~pel~~~~~~~~~~~-----~~~~~~~~L~~~~~~t~~f~~~ll 157 (357)
T cd06563 84 TQEEIREIVAYAAERGITVIPEIDMPGHALAALAA-YPELGCTGGPGSVVS-----VQGVVSNVLCPGKPETYTFLEDVL 157 (357)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCchhHHHHHHh-CccccCCCCCCcccc-----ccCcCCCccCCCChhHHHHHHHHH
Confidence 69999999999999999999887 47888642100 00000000 000000 001123469999999999999999
Q ss_pred HHHHHhCC
Q psy9004 124 RWYLEEYQ 131 (237)
Q Consensus 124 ~~w~~~~g 131 (237)
...++-+.
T Consensus 158 ~E~~~lF~ 165 (357)
T cd06563 158 DEVAELFP 165 (357)
T ss_pred HHHHHhCC
Confidence 99998543
No 102
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=93.83 E-value=0.088 Score=46.29 Aligned_cols=25 Identities=40% Similarity=0.507 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecc
Q psy9004 47 PEQLKYLVDECHKAGLYVLLDVVHS 71 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~VilD~v~n 71 (237)
..-|++|++.||+.||+||+|+-|.
T Consensus 48 ~~~~~ell~~Anklg~~vivDvnPs 72 (360)
T COG3589 48 FHRFKELLKEANKLGLRVIVDVNPS 72 (360)
T ss_pred HHHHHHHHHHHHhcCcEEEEEcCHH
Confidence 3568999999999999999997654
No 103
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=93.57 E-value=1.3 Score=39.59 Aligned_cols=108 Identities=18% Similarity=0.114 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccCCCccccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHH
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEI-EVLRFLLSNLR 124 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p-~v~~~i~~~~~ 124 (237)
..+-+++|+++|+++|||+.+=+.+. +. .++.+....... .. ......-..+ .+.+++..-++
T Consensus 136 krDiv~El~~A~rk~Glk~G~Y~S~~----dw---------~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~ql~ 199 (346)
T PF01120_consen 136 KRDIVGELADACRKYGLKFGLYYSPW----DW---------HHPDYPPDEEGD-EN--GPADGPGNWQRYYNEYWLAQLR 199 (346)
T ss_dssp TS-HHHHHHHHHHHTT-EEEEEEESS----SC---------CCTTTTSSCHCH-HC--C--HCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCeEEEEecch----Hh---------cCcccCCCccCC-cc--cccccchhhHhHhhhhhHHHHH
Confidence 35889999999999999999832211 10 001110000000 00 0000000011 24457778899
Q ss_pred HHHHhCCCcEEEecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhhCCCeEEEEe
Q psy9004 125 WYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAE 193 (237)
Q Consensus 125 ~w~~~~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~i~E 193 (237)
.++++|.+|.+=+|....- ..+.. ...++.+.+++..|++++..=
T Consensus 200 EL~~~Y~~d~lWfDg~~~~-----------------------~~~~~-~~~~~~~~i~~~qp~~ii~~r 244 (346)
T PF01120_consen 200 ELLTRYKPDILWFDGGWPD-----------------------PDEDW-DSAELYNWIRKLQPDVIINNR 244 (346)
T ss_dssp HHHHCSTESEEEEESTTSC-----------------------CCTHH-HHHHHHHHHHHHSTTSEEECC
T ss_pred HHHhCCCcceEEecCCCCc-----------------------ccccc-CHHHHHHHHHHhCCeEEEecc
Confidence 9999999999999987421 00111 236777888899998887653
No 104
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=93.42 E-value=0.62 Score=43.08 Aligned_cols=83 Identities=11% Similarity=0.107 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEe-eccccCCCccc------cccCCCCCC----CCccCCCCC--CCC--CCCCCCCCCC
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDV-VHSHASKNVLD------GLNEFDGTQ----ACFFHDGPR--GTH--PLWDSRLFNY 110 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~-v~nh~~~~~~~------~~~~~~~~~----~~~~~~~~~--~~~--~~~~~~~ln~ 110 (237)
|.+|++++|+-|+++||.||-.+ +|.|+..--.. .+... +.. +..+..... ... ..|....||.
T Consensus 95 T~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~a~~~~yp~l~~~-g~~~~~~~~~~~d~~~~~~~~~~~~~~~~~L~p 173 (445)
T cd06569 95 SRADYIEILKYAKARHIEVIPEIDMPGHARAAIKAMEARYRKLMAA-GKPAEAEEYRLSDPADTSQYLSVQFYTDNVINP 173 (445)
T ss_pred CHHHHHHHHHHHHHcCCEEEEccCCchhHHHHHHhhhccchhhhcc-CCccccccccccCcccccccccccccccccccC
Confidence 78999999999999999999887 47887642100 00000 000 011111000 000 1133456999
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q psy9004 111 SEIEVLRFLLSNLRWYLEE 129 (237)
Q Consensus 111 ~~p~v~~~i~~~~~~w~~~ 129 (237)
.+|++.+++.+++...++-
T Consensus 174 ~~~~ty~fl~~vl~Ev~~l 192 (445)
T cd06569 174 CMPSTYRFVDKVIDEIARM 192 (445)
T ss_pred CchhHHHHHHHHHHHHHHH
Confidence 9999999999999998874
No 105
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=93.19 E-value=1.4 Score=38.45 Aligned_cols=164 Identities=13% Similarity=0.033 Sum_probs=87.2
Q ss_pred hHHhhHHHHHcCccccCccCCCCCCCCccccccc-C--CCCCHHHHHHHHHHHHHcCCEEEEEe-eccccCCCccccccC
Q psy9004 8 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA-G--LFGTPEQLKYLVDECHKAGLYVLLDV-VHSHASKNVLDGLNE 83 (237)
Q Consensus 8 l~~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v-~--~~Gt~~~l~~lv~~~H~~Gi~VilD~-v~nh~~~~~~~~~~~ 83 (237)
|.+.++.++.+|+|.=.+.-.+. |...++-.+ + ..=|.+|++++++-|.++||.||-.+ +|.|+..-- .
T Consensus 19 lk~~id~ma~~k~N~l~lhl~D~--f~~~~~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vIPeid~pGH~~~~l----~- 91 (301)
T cd06565 19 LKKLLRLLALLGANGLLLYYEDT--FPYEGEPEVGRMRGAYTKEEIREIDDYAAELGIEVIPLIQTLGHLEFIL----K- 91 (301)
T ss_pred HHHHHHHHHHcCCCEEEEEEecc--eecCCCcccccCCCCcCHHHHHHHHHHHHHcCCEEEecCCCHHHHHHHH----h-
Confidence 55667888888877511111111 111112222 2 11279999999999999999999776 477775420 0
Q ss_pred CCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccCccccc-cCCCCCCCCCCccccc
Q psy9004 84 FDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYH-NHGCGEGFSGHYDEYF 162 (237)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~~l~~~-~~~~~~~~~~~~~~~~ 162 (237)
. +.+ ........ ....||.++|++.+++.+.+...++.+.-.=| ||-.. ...++.+. +.+..
T Consensus 92 ~----~~~-~~l~~~~~---~~~~l~~~~~~t~~fi~~li~ev~~~f~s~~~------HIG~DE~~~~g~~~---~~~~~ 154 (301)
T cd06565 92 H----PEF-RHLREVDD---PPQTLCPGEPKTYDFIEEMIRQVLELHPSKYI------HIGMDEAYDLGRGR---SLRKH 154 (301)
T ss_pred C----ccc-ccccccCC---CCCccCCCChhHHHHHHHHHHHHHHhCCCCeE------EECCCcccccCCCH---HHHHh
Confidence 0 011 00000000 13369999999999999999999985441111 22100 00011100 00000
Q ss_pred Cc-cCChhHHHHHHHHHHHHHhhCCCeEEEEecC
Q psy9004 163 GL-NVDTDALIYLMVANKFLHDKYPEIITIAEDV 195 (237)
Q Consensus 163 g~-~~~~~~~~~~~~~~~~~~~~~p~~~~i~E~~ 195 (237)
+. ....--..+++.+.+.+++..+..++=+|..
T Consensus 155 ~~~~~~~l~~~~~~~v~~~v~~~g~~~~~W~D~~ 188 (301)
T cd06565 155 GNLGRGELYLEHLKKVLKIIKKRGPKPMMWDDML 188 (301)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHcCCEEEEEhHHh
Confidence 00 1112235788888888888877666555554
No 106
>PLN02950 4-alpha-glucanotransferase
Probab=93.01 E-value=0.37 Score=48.38 Aligned_cols=90 Identities=18% Similarity=0.295 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHcCCEEEEEeecccc--CCCc---cccc--cCCCCCCCCccCCCCCCCCCCCCCCCCCCCCH--HHHHH
Q psy9004 48 EQLKYLVDECHKAGLYVLLDVVHSHA--SKNV---LDGL--NEFDGTQACFFHDGPRGTHPLWDSRLFNYSEI--EVLRF 118 (237)
Q Consensus 48 ~~l~~lv~~~H~~Gi~VilD~v~nh~--~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p--~v~~~ 118 (237)
.+++++.+.|+++||+|+-|+.+.-. |.+. +..+ ..--|..|.+|.... -.|+.+-+|+..- .--+.
T Consensus 461 ~Ql~~~~~yA~~~Gi~L~GDLpigV~~dSaDvWa~p~lF~l~~~aGaPPD~Fs~~G----Q~WG~P~ynw~~l~~~gy~w 536 (909)
T PLN02950 461 SQLSEAAEYARKKGVVLKGDLPIGVDRNSVDTWVYPNLFRMNTSTGAPPDYFDKNG----QNWGFPTYNWEEMSKDNYAW 536 (909)
T ss_pred HHHHHHHHHHHHCCCEEEEEeeceeCCCcHHHhcCHHHhcCCCccCCCCCcCCccc----ccCCCCCcCHHHHHhcCcHH
Confidence 67888999999999999999987433 3331 1111 122355566665432 3678777766421 12234
Q ss_pred HHHHHHHHHHhCCCcEEEecccCcc
Q psy9004 119 LLSNLRWYLEEYQFDGFRFDGVTSM 143 (237)
Q Consensus 119 i~~~~~~w~~~~giDGfR~D~~~~l 143 (237)
+++-++.-++ .+|++|||.+..+
T Consensus 537 w~~Rlr~~~~--~~d~lRIDH~~Gf 559 (909)
T PLN02950 537 WRARLTQMAK--YFTAYRIDHILGF 559 (909)
T ss_pred HHHHHHHHHH--hCCEEEEecchhh
Confidence 5566665555 6788999999865
No 107
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=92.87 E-value=4.8 Score=36.21 Aligned_cols=132 Identities=14% Similarity=0.083 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccCCCccccccCCCCCCCCccCCCCC--CC-CCCC----------CCCCCCCCCH
Q psy9004 47 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPR--GT-HPLW----------DSRLFNYSEI 113 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~----------~~~~ln~~~p 113 (237)
.+.|+++++++|++|-++++- ++|.+......... .+. . .+..... .. ...+ ....--.+..
T Consensus 78 i~~~~~lad~vH~~Ga~i~~Q--L~H~Gr~~~~~~~~-~~~-~-~~apS~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~ 152 (362)
T PRK10605 78 IAAWKKITAGVHAEGGHIAVQ--LWHTGRISHASLQP-GGQ-A-PVAPSAINAGTRTSLRDENGQAIRVETSTPRALELE 152 (362)
T ss_pred HHHHHHHHHHHHhCCCEEEEe--ccCCCCCCCcccCC-CCC-C-eECCCCcCcCcccccccccccccccCCCCCccCCHH
Confidence 578999999999999999996 56887753211100 000 0 0000000 00 0000 0000011122
Q ss_pred ---HHHHHHHHHHHHHHHhCCCcEEEecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhhCCC
Q psy9004 114 ---EVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPE 187 (237)
Q Consensus 114 ---~v~~~i~~~~~~w~~~~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~ 187 (237)
++.+.+.+..+.-.+ .|+||.-+.+++.-+-.+.=.+ ....-...+|++. .....|+.|+.++|++.-+.
T Consensus 153 eI~~ii~~f~~AA~rA~~-AGfDGVEIh~ahGyLl~qFLSp--~~N~RtDeYGGsl-ENR~Rf~~Eiv~aVr~~vg~ 225 (362)
T PRK10605 153 EIPGIVNDFRQAIANARE-AGFDLVELHSAHGYLLHQFLSP--SSNQRTDQYGGSV-ENRARLVLEVVDAGIAEWGA 225 (362)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCCEEEEcccccchHHHhcCC--cCCCCCCcCCCcH-HHHHHHHHHHHHHHHHHcCC
Confidence 333444444555555 8999999999985322211001 0111122233321 23467888888888886544
No 108
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=92.52 E-value=0.91 Score=42.61 Aligned_cols=145 Identities=19% Similarity=0.193 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHcCCEEEEEeeccccCCCccccc-------cCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHH--HH
Q psy9004 48 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL-------NEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVL--RF 118 (237)
Q Consensus 48 ~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~--~~ 118 (237)
.++.++=+.|+++||.+|-|+.+.-......-+. +..-|..|.+|... .-.|+.+-.|+..-.-+ +.
T Consensus 210 ~Q~~~~k~~A~~~~I~i~gDLpv~va~~saDvW~~~~~f~~~~~~GaPPD~f~~~----GQ~Wg~p~yn~~~l~~~~y~w 285 (520)
T COG1640 210 RQLAALKRYANDMGIGIIGDLPVGVAQDSADVWANPEYFCLDESAGAPPDVFNAQ----GQDWGLPPYNPEALKKDGYDW 285 (520)
T ss_pred HHHHHHHHHHHhcCceEeecccceecCCchhhhcCcccccccccCCCCCCccccc----ccccCCCCCCHHHHHHcccHH
Confidence 5677777778899999999998764433311111 11113334444322 23566665544322221 12
Q ss_pred HHHHHHHHHHhCCCcEEEecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhhCCCeEEEEecCCCC
Q psy9004 119 LLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGM 198 (237)
Q Consensus 119 i~~~~~~w~~~~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~i~E~~~~~ 198 (237)
.++-++.=++ -+|++|||.+..+..- .-++.+- +...|......+...+..+. +.+....+.+|||..+..
T Consensus 286 wierlr~~~~--~~~~lRIDHf~Gl~rl-W~ip~g~----~~a~g~~~~~~~~~~l~~l~--le~~~~~~~vIgEDLGtv 356 (520)
T COG1640 286 WIERLRANLK--LYGILRIDHFRGLFRL-WEIPYGE----DTAQGGYWRYPPGKLLFILA--LEALRANMLVIGEDLGTV 356 (520)
T ss_pred HHHHHHHHHH--hcCeeeeeeecchhhh-eeeeCCC----ccccCCcccCCHHHHHHHHH--HHhhhcCCcEEecccCCC
Confidence 3444444444 6788999999865311 0001100 01112222222222222221 222223699999999987
Q ss_pred CCccccc
Q psy9004 199 PASCRPV 205 (237)
Q Consensus 199 ~~~~~~~ 205 (237)
+.-.+..
T Consensus 357 p~eV~~~ 363 (520)
T COG1640 357 PAEVRDL 363 (520)
T ss_pred CHHHHHH
Confidence 7655543
No 109
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=92.50 E-value=0.82 Score=40.67 Aligned_cols=131 Identities=14% Similarity=0.137 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccCCCccccccCCCC---CCCCccCCCCCCCCCCCCCCCCCCCCHH---HHHHHH
Q psy9004 47 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDG---TQACFFHDGPRGTHPLWDSRLFNYSEIE---VLRFLL 120 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ln~~~p~---v~~~i~ 120 (237)
.+.+|++++++|+.|-++++- ++|.+............ ..+.+..... ..++...-..+..+ +.+.+.
T Consensus 79 i~~~k~l~~~vh~~Ga~i~~Q--L~H~G~~~~~~~~~~~~~~psa~~~~~~~~----~~~~~~~~~mt~~eI~~ii~~f~ 152 (341)
T PF00724_consen 79 IPGLKKLADAVHAHGAKIIAQ--LWHAGRQANPEYSGDPPVGPSAPSALPSPI----KFMGYPPREMTEEEIEEIIEDFA 152 (341)
T ss_dssp HHHHHHHHHHHHHTTSEEEEE--EE--GGGSSGCCSGGGCEESSCSSSSSTTT----TETSCEEEE--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccceee--ccccccccCcccCCCCccCcccccccCccc----ccCCCCCeeCCHHHHHHHHHHHH
Confidence 578999999999999999998 57777652111110000 0000110000 00000000112222 233333
Q ss_pred HHHHHHHHhCCCcEEEecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhhCCC
Q psy9004 121 SNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPE 187 (237)
Q Consensus 121 ~~~~~w~~~~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~ 187 (237)
+..+.-.+ .|+||.-+.+++.-+-.+.=.+ .....+..+|++. .....|+.++.+++++.-+.
T Consensus 153 ~AA~~A~~-AGfDGVEIH~ahGyLl~qFLSp--~~N~RtDeYGGs~-ENR~Rf~~Eii~aIr~~vg~ 215 (341)
T PF00724_consen 153 QAARRAKE-AGFDGVEIHAAHGYLLSQFLSP--LTNRRTDEYGGSL-ENRARFLLEIIEAIREAVGP 215 (341)
T ss_dssp HHHHHHHH-TT-SEEEEEESTTSHHHHHHST--TT---SSTTSSSH-HHHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHH-hccCeEeecccchhhhhheeee--ccCCCchhhhhhh-chhhHHHHHHHHHHHHHhcC
Confidence 44444444 8999999999974321211000 0111122333321 23567888888888876543
No 110
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=92.36 E-value=5.9 Score=34.39 Aligned_cols=164 Identities=10% Similarity=0.024 Sum_probs=89.4
Q ss_pred hHHhhHHHHHcCcccc---CccCCCCCCCCccccccc-CCCCCHHH-HHHHHHHH-HHcCCEEEEEeeccccCCCccccc
Q psy9004 8 TPEQLKYLVDECHKAG---LFGTPEQLKYLVDECHKA-GLFGTPEQ-LKYLVDEC-HKAGLYVLLDVVHSHASKNVLDGL 81 (237)
Q Consensus 8 l~~~L~yl~~lGv~~p---i~~~~~~~gY~~~d~~~v-~~~Gt~~~-l~~lv~~~-H~~Gi~VilD~v~nh~~~~~~~~~ 81 (237)
|-..++.|+++|+++- .|.-|...|-.- ..|-+ .++--.+| |-+.+=++ .+.|++|+.++.+ .+-+-+. .
T Consensus 19 l~~l~~ri~~~~~~tV~Lqaf~d~~gdg~~~-~~YFpnr~lpvraDlf~rvawql~tr~~v~VyAWMPv--laf~lp~-~ 94 (294)
T PF14883_consen 19 LDKLIQRIKDMGINTVYLQAFADPDGDGNAD-AVYFPNRHLPVRADLFNRVAWQLRTRAGVKVYAWMPV--LAFDLPK-V 94 (294)
T ss_pred HHHHHHHHHHcCCCEEEEEeeeCCCCCCcee-eEEcCCCCCchHHHHHHHHHHHHhhhhCCEEEEeeeh--hhccCCC-c
Confidence 4456789999999982 233444444221 12223 44444444 55555244 4999999999875 1211000 0
Q ss_pred cCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEe-cccCccccccCCCCCCCCCCccc
Q psy9004 82 NEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRF-DGVTSMLYHNHGCGEGFSGHYDE 160 (237)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~-D~~~~l~~~~~~~~~~~~~~~~~ 160 (237)
... ...... ....-...-|..-+|++|+.|.++...+...-.|||+-| |-+- + .|..+++.......+
T Consensus 95 ~~~-----~~~~~~---~~~~~~y~RLSPf~p~~r~~I~~IYeDLA~y~~fdGILFhDDa~-L--~D~E~~~~~~~~~~~ 163 (294)
T PF14883_consen 95 KRA-----DEVRTD---RPDPDGYRRLSPFDPEARQIIKEIYEDLARYSKFDGILFHDDAV-L--SDFEIAAIRQNPADR 163 (294)
T ss_pred chh-----hhcccc---CCCCCCceecCCCCHHHHHHHHHHHHHHHhhCCCCeEEEcCCcc-c--cchhhhhhccChhhH
Confidence 000 000000 001112235777899999999999999998559999998 3331 2 121111111110000
Q ss_pred ccCccCChhHHHHHHHHHHHHHhhCCCeEE
Q psy9004 161 YFGLNVDTDALIYLMVANKFLHDKYPEIIT 190 (237)
Q Consensus 161 ~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~ 190 (237)
.....-.+|..++.+.++...|++.+
T Consensus 164 ----~Kt~~Li~ft~eL~~~v~~~rp~lkT 189 (294)
T PF14883_consen 164 ----QKTRALIDFTMELAAAVRRYRPDLKT 189 (294)
T ss_pred ----HHHHHHHHHHHHHHHHHHHhCccchh
Confidence 00112377999999999998887654
No 111
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=91.86 E-value=0.82 Score=44.79 Aligned_cols=90 Identities=13% Similarity=0.226 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHcCCEEEEEeeccccCCCcccc-------ccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHH--HHH
Q psy9004 48 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG-------LNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEV--LRF 118 (237)
Q Consensus 48 ~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v--~~~ 118 (237)
.+++++.+.|+++||+++-|+.+.-......-| +..--|..|.+|... .-+|+.+-+|+..-+- -+.
T Consensus 274 ~Q~~~~~~yA~~~GI~L~GDLPIgVa~dSaDvWa~p~lF~ld~~aGAPPD~FS~~----GQnWG~P~YnW~~l~~dgY~W 349 (745)
T PLN03236 274 RQLRRAAAHAAAKGVILKGDLPIGVDKASVDTWMHPKLFRMDTSTGAPPDAFDAN----GQNWGFPTYDWEEMAEDDYAW 349 (745)
T ss_pred HHHHHHHHHHHHCCCEEEEEeeceeCCCcHHHhcCHHHhcCCCCcCCCCCCCCcc----cCcCCCCCcCHHHHHhcCcHH
Confidence 678888899999999999999875443321111 112235556666443 2367777776632111 123
Q ss_pred HHHHHHHHHHhCCCcEEEecccCcc
Q psy9004 119 LLSNLRWYLEEYQFDGFRFDGVTSM 143 (237)
Q Consensus 119 i~~~~~~w~~~~giDGfR~D~~~~l 143 (237)
+++.+++-++ -+|++|||.+..+
T Consensus 350 Wr~Rlr~~~~--~~dalRIDH~~Gf 372 (745)
T PLN03236 350 WRARMQHLEQ--FFSAIRIDHILGF 372 (745)
T ss_pred HHHHHHHHHH--hCCeEEeechhhh
Confidence 4444544444 4788999999865
No 112
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=91.53 E-value=6.1 Score=35.53 Aligned_cols=131 Identities=18% Similarity=0.157 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccCCCccccccCCCCCCCCccCCCCCCC-CCCCCCCCCCCCCHH---HHHHHHHH
Q psy9004 47 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGT-HPLWDSRLFNYSEIE---VLRFLLSN 122 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ln~~~p~---v~~~i~~~ 122 (237)
.+.|+++++++|+.|=++++-+ +|.+...........+.. . . .+... ......+ --.+..+ +.+.+.+.
T Consensus 77 i~~~~~l~d~vh~~Ga~i~~QL--~H~Gr~~~~~~~~~~~~~-~-~--~ps~~~~~~~~~p-~~mt~~eI~~ii~~f~~A 149 (361)
T cd04747 77 LAGWKKVVDEVHAAGGKIAPQL--WHVGAMRKLGTPPFPDVP-P-L--SPSGLVGPGKPVG-REMTEADIDDVIAAFARA 149 (361)
T ss_pred HHHHHHHHHHHHhcCCEEEEec--cCCCCCcCcccCccCCCc-e-e--CCCCCCcCCCCCC-ccCCHHHHHHHHHHHHHH
Confidence 5789999999999999999884 787765211000000000 0 0 00000 0000000 0112223 33333444
Q ss_pred HHHHHHhCCCcEEEecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhhC-CCe
Q psy9004 123 LRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKY-PEI 188 (237)
Q Consensus 123 ~~~w~~~~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-p~~ 188 (237)
.+.-.+ .|+||+-+-++..-+-.+.=.+ ....-+..+|++ -.....|+.++.+++++.. |++
T Consensus 150 A~~a~~-aGfDgVeih~ahGyLl~qFLSp--~~N~RtDeYGGs-lenR~Rf~~eii~air~~vG~d~ 212 (361)
T cd04747 150 AADARR-LGFDGIELHGAHGYLIDQFFWA--GTNRRADGYGGS-LAARSRFAAEVVKAIRAAVGPDF 212 (361)
T ss_pred HHHHHH-cCCCEEEEecccchHHHHhcCC--CCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHcCCCC
Confidence 454555 7999999999984221111000 000111222332 1234678888998888864 554
No 113
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=91.36 E-value=0.55 Score=42.23 Aligned_cols=119 Identities=14% Similarity=0.098 Sum_probs=65.7
Q ss_pred hHHhhHHHHHcCccccCccCCCCCCCCccccccc-CCCCC--HHHHHHHHHHHHHcCCEEEEEeeccccCCCccccccCC
Q psy9004 8 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA-GLFGT--PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF 84 (237)
Q Consensus 8 l~~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v-~~~Gt--~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~ 84 (237)
+.+-+.-++++|+++ +-... ..+..+ |.=|. -+.|.++++.|+++||+|||-+. .+..+. ++..
T Consensus 12 ~~~d~~~m~~~G~n~-vri~~-------~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~-~~~~P~---Wl~~- 78 (374)
T PF02449_consen 12 WEEDLRLMKEAGFNT-VRIGE-------FSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTP-TAAPPA---WLYD- 78 (374)
T ss_dssp HHHHHHHHHHHT-SE-EEE-C-------CEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEEC-TTTS-H---HHHC-
T ss_pred HHHHHHHHHHcCCCE-EEEEE-------echhhccCCCCeeecHHHHHHHHHHHhccCeEEEEec-cccccc---chhh-
Confidence 456788899999987 22111 112233 33332 45689999999999999999765 222222 2111
Q ss_pred CCCCCCccCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHhCC----CcEEEecccC
Q psy9004 85 DGTQACFFHDGPRGTHPLWD-SRLFNYSEIEVLRFLLSNLRWYLEEYQ----FDGFRFDGVT 141 (237)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~-~~~ln~~~p~v~~~i~~~~~~w~~~~g----iDGfR~D~~~ 141 (237)
..|........+.....+ ....++.+|.+++++...++..+++|+ |-|+-+|+=.
T Consensus 79 --~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~ 138 (374)
T PF02449_consen 79 --KYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEP 138 (374)
T ss_dssp --CSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCST
T ss_pred --hcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEecccc
Confidence 111111111112111222 234678899999998888877776554 7789888753
No 114
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=91.22 E-value=4.4 Score=36.50 Aligned_cols=130 Identities=15% Similarity=0.133 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccCCCccccccCCCCCCCCccCCCCCCCCCCCC-C-CCCCCCCH---HHHHHHHH
Q psy9004 47 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWD-S-RLFNYSEI---EVLRFLLS 121 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~ln~~~p---~v~~~i~~ 121 (237)
.+.|+++++++|+.|=++++- ++|.+.......... |....+........ . ..=-.+.. ++.+.+.+
T Consensus 82 i~~~~~vt~avH~~G~~i~iQ--L~H~Gr~~~~~~~~~------~~~vapS~~~~~~~~~~~pr~mt~~eI~~ii~~f~~ 153 (363)
T COG1902 82 IPGLKRLTEAVHAHGAKIFIQ--LWHAGRKARASHPWL------PSAVAPSAIPAPGGRRATPRELTEEEIEEVIEDFAR 153 (363)
T ss_pred hHHHHHHHHHHHhcCCeEEEE--eccCcccccccccCC------CcccCCCccccccCCCCCCccCCHHHHHHHHHHHHH
Confidence 568999999999999999988 688885421110000 00000000000000 0 00011222 33344444
Q ss_pred HHHHHHHhCCCcEEEecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhhCCCe
Q psy9004 122 NLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEI 188 (237)
Q Consensus 122 ~~~~w~~~~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~ 188 (237)
..+.-.+ .|+||.-+-+|+.-+-.+.=. ..+..-+..+|++ -.....|..|+.++|++.-+.-
T Consensus 154 AA~rA~~-AGFDgVEIH~AhGYLi~qFls--p~tN~RtD~YGGS-lENR~Rf~~EVv~aVr~~vg~~ 216 (363)
T COG1902 154 AARRAKE-AGFDGVEIHGAHGYLLSQFLS--PLTNKRTDEYGGS-LENRARFLLEVVDAVREAVGAD 216 (363)
T ss_pred HHHHHHH-cCCCEEEEeeccchHHHHhcC--CccCCCCCccCCc-HHHHHHHHHHHHHHHHHHhCCC
Confidence 5555555 799999999998532221110 1111122233333 2235678888888888766543
No 115
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=91.13 E-value=0.14 Score=45.26 Aligned_cols=80 Identities=19% Similarity=0.222 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEe-eccccCCCccc--cccCC-CCCCCCccCCCCCCCCCCCC--CCCCCCCCHHHHHHH
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDV-VHSHASKNVLD--GLNEF-DGTQACFFHDGPRGTHPLWD--SRLFNYSEIEVLRFL 119 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~-v~nh~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~ln~~~p~v~~~i 119 (237)
|.+|+++||+-|+.+||+||..+ +|.|+..--.. .+... ......+.. ...+. ...+|..+|++.+++
T Consensus 71 T~~di~~lv~yA~~~gI~VIPeid~PGH~~~~l~~~p~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~t~~~~ 144 (351)
T PF00728_consen 71 TKEDIRELVAYAKERGIEVIPEIDTPGHAEAWLKAYPELGCSAWPEDKSWPN------STCWYPDNGVLDPSNPETYEFL 144 (351)
T ss_dssp EHHHHHHHHHHHHHTT-EEEEEEEESSS-HHHHHHHHHHCCCHTTCSSSCEE------EETTSEEEEEE-TTSHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCceeeeccCchHHHHHHHhCchhhcccccccccccc------ccccCCCcccCCCCcHHHHHHH
Confidence 78999999999999999999988 58888763110 00000 000000100 00111 125999999999999
Q ss_pred HHHHHHHHHhCC
Q psy9004 120 LSNLRWYLEEYQ 131 (237)
Q Consensus 120 ~~~~~~w~~~~g 131 (237)
.+.+...++-+.
T Consensus 145 ~~l~~e~~~~f~ 156 (351)
T PF00728_consen 145 KDLLDEVADLFP 156 (351)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHhhCC
Confidence 999999998666
No 116
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=90.98 E-value=1.4 Score=38.86 Aligned_cols=96 Identities=15% Similarity=0.132 Sum_probs=49.9
Q ss_pred HHhhHHHHHcCccc---cCc---cCCCCCCCCcccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCCcccccc
Q psy9004 9 PEQLKYLVDECHKA---GLF---GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLN 82 (237)
Q Consensus 9 ~~~L~yl~~lGv~~---pi~---~~~~~~gY~~~d~~~v~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~ 82 (237)
.++|..+|++|+++ +++ ..|.. ...||. +..+|.+|++.|+++||.|||-.=+=-++.-.
T Consensus 27 ~~~l~k~ka~G~n~v~~yv~W~~he~~~---g~~df~------g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~----- 92 (319)
T PF01301_consen 27 RDRLQKMKAAGLNTVSTYVPWNLHEPEE---GQFDFT------GNRDLDRFLDLAQENGLYVILRPGPYICAEWD----- 92 (319)
T ss_dssp HHHHHHHHHTT-SEEEEE--HHHHSSBT---TB---S------GGG-HHHHHHHHHHTT-EEEEEEES---TTBG-----
T ss_pred HHHHHHHHhCCcceEEEeccccccCCCC---Cccccc------chhhHHHHHHHHHHcCcEEEecccceeccccc-----
Confidence 57899999999987 211 11110 122332 45789999999999999999996553333321
Q ss_pred CCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy9004 83 EFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLE 128 (237)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~~w~~ 128 (237)
.+-.|.|....+. ..+...+|...+.+..++...++
T Consensus 93 --~gG~P~Wl~~~~~--------~~~R~~~~~~~~~~~~~~~~~~~ 128 (319)
T PF01301_consen 93 --NGGLPAWLLRKPD--------IRLRTNDPPFLEAVERWYRALAK 128 (319)
T ss_dssp --GGG--GGGGGSTT--------S-SSSS-HHHHHHHHHHHHHHHH
T ss_pred --chhhhhhhhcccc--------ccccccchhHHHHHHHHHHHHHH
Confidence 0112445443321 13455677766666666555544
No 117
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=90.65 E-value=5.8 Score=35.14 Aligned_cols=130 Identities=15% Similarity=0.158 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccCCCccccccCCCCCCCCccCCCCCCCCC------CCCCCCCCCCCHH---HHH
Q psy9004 47 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHP------LWDSRLFNYSEIE---VLR 117 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ln~~~p~---v~~ 117 (237)
.+.|++|++++|++|-++++- ++|.+........ . ..+ . +..... .+.. .--.+..+ +.+
T Consensus 81 i~~~~~l~~~vh~~G~~~~~Q--l~h~G~~~~~~~~---~--~~~-~--ps~~~~~~~~~~~~~~-p~~mt~~eI~~~i~ 149 (338)
T cd04733 81 LEAFREWAAAAKANGALIWAQ--LNHPGRQSPAGLN---Q--NPV-A--PSVALDPGGLGKLFGK-PRAMTEEEIEDVID 149 (338)
T ss_pred HHHHHHHHHHHHhcCCEEEEE--ccCCCcCCCccCC---C--CCc-C--CCCCcCcccccccCCC-CCcCCHHHHHHHHH
Confidence 578999999999999999988 5687765211100 0 000 0 000000 0000 00112222 333
Q ss_pred HHHHHHHHHHHhCCCcEEEecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhhC-CCeEEE
Q psy9004 118 FLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKY-PEIITI 191 (237)
Q Consensus 118 ~i~~~~~~w~~~~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-p~~~~i 191 (237)
.+.+..+.-. +.|+||+-+-++..-.-.+.=.+. ...-...+|++ -.....|..++.+++++.- +++.+.
T Consensus 150 ~~~~aA~ra~-~aGfDgVeih~a~gyLl~qFlsp~--~N~R~D~yGGs-lenR~rf~~EiI~aIR~avG~d~~v~ 220 (338)
T cd04733 150 RFAHAARLAQ-EAGFDGVQIHAAHGYLLSQFLSPL--TNKRTDEYGGS-LENRARLLLEIYDAIRAAVGPGFPVG 220 (338)
T ss_pred HHHHHHHHHH-HcCCCEEEEchhhhhHHHHhcCCc--CCCCCccCCCC-HHHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 4445555544 489999999988632111110010 00111223333 2345678888888888765 454443
No 118
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=90.32 E-value=7.7 Score=34.94 Aligned_cols=129 Identities=11% Similarity=0.047 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccCCCccccccCCCCCCCCccCCCCCCCCCC----CCCCCCCCCCHH---HHHHH
Q psy9004 47 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPL----WDSRLFNYSEIE---VLRFL 119 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ln~~~p~---v~~~i 119 (237)
.+.++++++++|++|-++++-+. |.+...... ..+. .. +. +...... +....-..+..+ +.+.+
T Consensus 82 i~~~~~l~~~vh~~G~~i~~QL~--H~G~~~~~~---~~~~-~~-~~--ps~~~~~~~~~~~~~p~~mt~~eI~~ii~~f 152 (370)
T cd02929 82 IRNLAAMTDAVHKHGALAGIELW--HGGAHAPNR---ESRE-TP-LG--PSQLPSEFPTGGPVQAREMDKDDIKRVRRWY 152 (370)
T ss_pred HHHHHHHHHHHHHCCCeEEEecc--cCCCCCCcc---CCCC-Cc-cC--CCCCCCCccccCCCCCccCCHHHHHHHHHHH
Confidence 57899999999999999999854 887652110 0000 00 00 0000000 000001122233 34444
Q ss_pred HHHHHHHHHhCCCcEEEecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhhC-CCe
Q psy9004 120 LSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKY-PEI 188 (237)
Q Consensus 120 ~~~~~~w~~~~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-p~~ 188 (237)
.+..+.-.+ .|+||+-+-++..-+-.+.=.+. ...-...+|++. .....|+.++.+++++.. +++
T Consensus 153 ~~AA~ra~~-aGfDgVEih~ahGyLl~QFlSp~--~N~RtD~yGGsl-enR~Rf~~eii~aIr~~vg~~~ 218 (370)
T cd02929 153 VDAALRARD-AGFDIVYVYAAHGYLPLQFLLPR--YNKRTDEYGGSL-ENRARFWRETLEDTKDAVGDDC 218 (370)
T ss_pred HHHHHHHHH-cCCCEEEEcccccchHHHhhCcc--ccCCccccCCCh-HhhhHHHHHHHHHHHHHcCCCc
Confidence 455554544 79999999998732111110000 011111223321 234678888888888865 453
No 119
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=90.27 E-value=10 Score=34.33 Aligned_cols=127 Identities=13% Similarity=0.154 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccc-CCCccccccCCCCCCCCccCCCCCCCCCCCC--CCCCCCCCHH---HHHHHH
Q psy9004 47 PEQLKYLVDECHKAGLYVLLDVVHSHA-SKNVLDGLNEFDGTQACFFHDGPRGTHPLWD--SRLFNYSEIE---VLRFLL 120 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~VilD~v~nh~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ln~~~p~---v~~~i~ 120 (237)
.+.||++++++|++|-++++-+ +|. +........ .+ ... +. +......+. ...-..+..+ +.+.+.
T Consensus 82 i~~~k~l~davh~~G~~i~~QL--~H~~Gr~~~~~~~--~~-~~~-~~--ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~ 153 (382)
T cd02931 82 IRTAKEMTERVHAYGTKIFLQL--TAGFGRVCIPGFL--GE-DKP-VA--PSPIPNRWLPEITCRELTTEEVETFVGKFG 153 (382)
T ss_pred hHHHHHHHHHHHHcCCEEEEEc--cCcCCCccCcccc--CC-CCc-cC--CCCCCCCcCCCCCCCcCCHHHHHHHHHHHH
Confidence 4679999999999999999775 575 554211000 00 000 00 000000000 0000112222 333344
Q ss_pred HHHHHHHHhCCCcEEEecccC-c-cccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhhCC
Q psy9004 121 SNLRWYLEEYQFDGFRFDGVT-S-MLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYP 186 (237)
Q Consensus 121 ~~~~~w~~~~giDGfR~D~~~-~-l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p 186 (237)
+..+.-.+ .|+||+-+-++. . ++ .+.= . .....-...+|++ -.....|+.++.+++++..+
T Consensus 154 ~AA~ra~~-AGfDgVEih~ah~GyLl-~qFL-S-p~~N~RtDeyGGs-lenR~rf~~eii~~vr~~~g 216 (382)
T cd02931 154 ESAVIAKE-AGFDGVEIHAVHEGYLL-DQFT-I-SLFNKRTDKYGGS-LENRLRFAIEIVEEIKARCG 216 (382)
T ss_pred HHHHHHHH-cCCCEEEEeccccChHH-HHhc-C-CccCCCCCcCCCC-HHHHhHHHHHHHHHHHHhcC
Confidence 44444444 799999999986 2 32 1100 0 0011111223332 22356788888888887654
No 120
>PRK15452 putative protease; Provisional
Probab=90.24 E-value=4.8 Score=37.25 Aligned_cols=89 Identities=18% Similarity=0.251 Sum_probs=55.5
Q ss_pred ChHHhhHHHHHcCccccCccCCCCCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCCccccccCCC
Q psy9004 7 GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFD 85 (237)
Q Consensus 7 Gl~~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~~ 85 (237)
|=.++|...-+.|.++ +|-.....+- ..- ..| +.++|++.|+.||++|++|++ .+|....+
T Consensus 11 g~~e~l~aAi~~GADa-VY~G~~~~~~-----R~~~~~f-~~edl~eav~~ah~~g~kvyv--t~n~i~~e--------- 72 (443)
T PRK15452 11 GTLKNMRYAFAYGADA-VYAGQPRYSL-----RVRNNEF-NHENLALGINEAHALGKKFYV--VVNIAPHN--------- 72 (443)
T ss_pred CCHHHHHHHHHCCCCE-EEECCCccch-----hhhccCC-CHHHHHHHHHHHHHcCCEEEE--EecCcCCH---------
Confidence 4456677777779888 5543322111 111 223 468999999999999999987 44433221
Q ss_pred CCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccCc
Q psy9004 86 GTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTS 142 (237)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~~ 142 (237)
.-.+.+.+.+..+.+ .||||+-+-....
T Consensus 73 ----------------------------~el~~~~~~l~~l~~-~gvDgvIV~d~G~ 100 (443)
T PRK15452 73 ----------------------------AKLKTFIRDLEPVIA-MKPDALIMSDPGL 100 (443)
T ss_pred ----------------------------HHHHHHHHHHHHHHh-CCCCEEEEcCHHH
Confidence 123345555665665 8999999876553
No 121
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=90.01 E-value=2.7 Score=36.86 Aligned_cols=132 Identities=14% Similarity=0.187 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccCCCccccccCCCCCCCCccCCCCCCCCCCCCC-CCCCCCCH---HHHHHHHHH
Q psy9004 47 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDS-RLFNYSEI---EVLRFLLSN 122 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ln~~~p---~v~~~i~~~ 122 (237)
.+.+|++++++|+.|-++++- ++|.+........ +.. . +. +......+.. ..--.+.. ++.+.+.+.
T Consensus 76 ~~~~~~~~~~vh~~g~~~~~Q--l~h~G~~~~~~~~---~~~-~-~~--~s~~~~~~~~~~~~~mt~~ei~~~i~~~~~a 146 (327)
T cd02803 76 IPGLRKLTEAVHAHGAKIFAQ--LAHAGRQAQPNLT---GGP-P-PA--PSAIPSPGGGEPPREMTKEEIEQIIEDFAAA 146 (327)
T ss_pred HHHHHHHHHHHHhCCCHhhHH--hhCCCcCCCCcCC---CCC-c-cC--CCCCCCCCCCCCCCcCCHHHHHHHHHHHHHH
Confidence 578999999999999998876 5787765211100 000 0 00 0000000000 00011222 344455555
Q ss_pred HHHHHHhCCCcEEEecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhhC-CCeEEE
Q psy9004 123 LRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKY-PEIITI 191 (237)
Q Consensus 123 ~~~w~~~~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-p~~~~i 191 (237)
.+...+ .|+||+-+.++..-+..+.=.+. ...-...+|++. .....|+.++.+++++.. +++.+.
T Consensus 147 A~~a~~-aGfDgveih~~~gyL~~qFlsp~--~n~R~d~yGgs~-enr~r~~~eii~avr~~~g~d~~i~ 212 (327)
T cd02803 147 ARRAKE-AGFDGVEIHGAHGYLLSQFLSPY--TNKRTDEYGGSL-ENRARFLLEIVAAVREAVGPDFPVG 212 (327)
T ss_pred HHHHHH-cCCCEEEEcchhhhHHHHhcCcc--ccCCCcccCCCH-HHHHHHHHHHHHHHHHHcCCCceEE
Confidence 666665 79999999988432111100010 001112223322 234567778888888765 454433
No 122
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=89.85 E-value=9.6 Score=33.93 Aligned_cols=128 Identities=9% Similarity=0.124 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccCCCccccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHH---HHHHHHHHH
Q psy9004 47 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIE---VLRFLLSNL 123 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~---v~~~i~~~~ 123 (237)
.+.+++|++++|+.|-++++- ++|.+..... ...+. +.. ..... .........-..+..+ +.+.+..+.
T Consensus 76 i~~~~~l~~~vh~~g~~~~~Q--l~H~G~~~~~---~~~~~-~~~-~ps~~-~~~~~~~~~~~mt~~eI~~ii~~f~~AA 147 (343)
T cd04734 76 IPGFRRLAEAVHAHGAVIMIQ--LTHLGRRGDG---DGSWL-PPL-APSAV-PEPRHRAVPKAMEEEDIEEIIAAFADAA 147 (343)
T ss_pred HHHHHHHHHHHHhcCCeEEEe--ccCCCcCcCc---ccCCC-ccc-CCCCC-CCCCCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 468999999999999999986 6777664210 00000 000 00000 0000000001122233 333444444
Q ss_pred HHHHHhCCCcEEEecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhhCC
Q psy9004 124 RWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYP 186 (237)
Q Consensus 124 ~~w~~~~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p 186 (237)
+.-.+ .|+||+-+-+++.-+-.+.=.+ .....+..+|++. .....|+.++.+++++.-+
T Consensus 148 ~ra~~-aGfDgVeih~ahGyLl~qFlsp--~~N~RtD~yGGsl-enR~r~~~eiv~~ir~~vg 206 (343)
T cd04734 148 RRCQA-GGLDGVELQAAHGHLIDQFLSP--LTNRRTDEYGGSL-ENRMRFLLEVLAAVRAAVG 206 (343)
T ss_pred HHHHH-cCCCEEEEccccchHHHHhhCC--CcCCCCCcCCCCH-HHHhHHHHHHHHHHHHHcC
Confidence 44444 7999999999853110100000 0011112233332 2345788888888888653
No 123
>TIGR03356 BGL beta-galactosidase.
Probab=89.34 E-value=2.1 Score=39.42 Aligned_cols=88 Identities=14% Similarity=0.098 Sum_probs=57.5
Q ss_pred hHHhhHHHHHcCccccCccCCCCCCCCccccccc-CC-CC-----CHHHHHHHHHHHHHcCCEEEEEeeccccCCCcccc
Q psy9004 8 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA-GL-FG-----TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG 80 (237)
Q Consensus 8 l~~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v-~~-~G-----t~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~ 80 (237)
..+-++-|++||+++ +. -..++..+ |. -| ..+-..++|++|+++||++|+++. |-.
T Consensus 56 y~eDi~l~~~~G~~~--~R-------~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~--Hfd------ 118 (427)
T TIGR03356 56 YEEDVALMKELGVDA--YR-------FSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLY--HWD------ 118 (427)
T ss_pred HHHHHHHHHHcCCCe--EE-------cccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeec--cCC------
Confidence 346678899999987 11 11234455 54 23 246688999999999999999975 421
Q ss_pred ccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCC
Q psy9004 81 LNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQ 131 (237)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~~w~~~~g 131 (237)
.|.|+... --+.|+++.+.+.+..+..+++||
T Consensus 119 -------~P~~l~~~------------gGw~~~~~~~~f~~ya~~~~~~~~ 150 (427)
T TIGR03356 119 -------LPQALEDR------------GGWLNRDTAEWFAEYAAVVAERLG 150 (427)
T ss_pred -------ccHHHHhc------------CCCCChHHHHHHHHHHHHHHHHhC
Confidence 12222211 123567888888888888888776
No 124
>PLN02411 12-oxophytodienoate reductase
Probab=89.30 E-value=9.3 Score=34.72 Aligned_cols=132 Identities=14% Similarity=0.112 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccCCCccccccCCCCCCC----------CccCCCCCCCCCCCCCCCCCCCCHHHH
Q psy9004 47 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQA----------CFFHDGPRGTHPLWDSRLFNYSEIEVL 116 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~ln~~~p~v~ 116 (237)
.+.+++|++++|++|-++++- ++|.+......... .+..+ .|-...+.+.. ......--.+..++.
T Consensus 86 i~~~~~l~~avH~~G~~i~~Q--L~H~Gr~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~~pr~mt~~eI~ 161 (391)
T PLN02411 86 VEAWKKVVDAVHAKGSIIFCQ--LWHVGRASHQVYQP-GGAAPISSTNKPISERWRILMPDGSY-GKYPKPRALETSEIP 161 (391)
T ss_pred HHHHHHHHHHHHhcCCEEEEe--ccCCCCCCcccccc-CCCCccCCccccccCCcccccCCccc-cCCCCCccCCHHHHH
Confidence 467999999999999999988 46877652111000 00000 00000000000 000000112223333
Q ss_pred ---HHHHHHHHHHHHhCCCcEEEecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhhCC
Q psy9004 117 ---RFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYP 186 (237)
Q Consensus 117 ---~~i~~~~~~w~~~~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p 186 (237)
+.+.+..+.-.+ .|+||.-+-+++.-+-.+.=.+ ....-...+|++. .....|+.++.++|++.-+
T Consensus 162 ~ii~~f~~AA~rA~~-AGFDGVEIH~AhGYLl~QFLSp--~tN~RtDeYGGSl-ENR~RF~lEIi~aVr~~vg 230 (391)
T PLN02411 162 EVVEHYRQAALNAIR-AGFDGIEIHGAHGYLIDQFLKD--GINDRTDEYGGSI-ENRCRFLMQVVQAVVSAIG 230 (391)
T ss_pred HHHHHHHHHHHHHHH-cCCCEEEEccccchHHHHhCCC--ccCCCCCcCCCCH-HHHhHHHHHHHHHHHHHcC
Confidence 333444555555 8999999999975322211000 0111122333321 2356788888888887654
No 125
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=89.16 E-value=4.4 Score=34.99 Aligned_cols=96 Identities=13% Similarity=0.044 Sum_probs=52.3
Q ss_pred cCChHHhhHHHHHcCccccCccCCCC-CCC-Cccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCCccccc
Q psy9004 5 GFGTPEQLKYLVDECHKAGLFGTPEQ-LKY-LVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL 81 (237)
Q Consensus 5 ~~Gl~~~L~yl~~lGv~~pi~~~~~~-~gY-~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~ 81 (237)
.+....-+|.-+++|+.--++..-.+ ++. ...|++.+ +. .++++||+=|+++|++|+|.+.-+.....
T Consensus 31 t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~----~dl~elv~Ya~~KgVgi~lw~~~~~~~~~----- 101 (273)
T PF10566_consen 31 TETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPD----FDLPELVDYAKEKGVGIWLWYHSETGGNV----- 101 (273)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT------HHHHHHHHHHTT-EEEEEEECCHTTBH-----
T ss_pred HHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCc----cCHHHHHHHHHHcCCCEEEEEeCCcchhh-----
Confidence 34456677888899975422211111 111 34555555 44 78999999999999999998543221111
Q ss_pred cCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccC
Q psy9004 82 NEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVT 141 (237)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~ 141 (237)
..+.+.+.+.+..+.+ .||.|+.+|.+.
T Consensus 102 -------------------------------~~~~~~~~~~f~~~~~-~Gv~GvKidF~~ 129 (273)
T PF10566_consen 102 -------------------------------ANLEKQLDEAFKLYAK-WGVKGVKIDFMD 129 (273)
T ss_dssp -------------------------------HHHHCCHHHHHHHHHH-CTEEEEEEE--S
T ss_pred -------------------------------HhHHHHHHHHHHHHHH-cCCCEEeeCcCC
Confidence 1133345445555555 999999999985
No 126
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=89.10 E-value=13 Score=33.05 Aligned_cols=123 Identities=15% Similarity=0.141 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccCCCccccccCCCCCCCCccCCCCCCCCC-CCCCCCCCCCCHH---HHHHHHHH
Q psy9004 47 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHP-LWDSRLFNYSEIE---VLRFLLSN 122 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ln~~~p~---v~~~i~~~ 122 (237)
...++++++++|+.|-++++- ++|.+..... .+ .+ . .+..... ......-..+..+ +.+.+.+.
T Consensus 80 i~~~r~l~d~vh~~G~~i~~Q--L~H~G~~~~~-----~~-~~--~--~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~a 147 (337)
T PRK13523 80 IEGLHKLVTFIHDHGAKAAIQ--LAHAGRKAEL-----EG-DI--V--APSAIPFDEKSKTPVEMTKEQIKETVLAFKQA 147 (337)
T ss_pred HHHHHHHHHHHHhcCCEEEEE--ccCCCCCCCC-----CC-Cc--c--CCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHH
Confidence 578999999999999999988 5777765210 00 00 0 0000000 0000001122233 33334444
Q ss_pred HHHHHHhCCCcEEEecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhhC
Q psy9004 123 LRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKY 185 (237)
Q Consensus 123 ~~~w~~~~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 185 (237)
.+.-.+ .|+||+-+-+++.-+-.+.=.+ ....-...+|++ -.....|+.++.+.+++..
T Consensus 148 A~~a~~-aGfDgVeih~ahGyLl~qFlSp--~~N~RtD~yGGs-lenR~Rf~~eii~~ir~~~ 206 (337)
T PRK13523 148 AVRAKE-AGFDVIEIHGAHGYLINEFLSP--LSNKRTDEYGGS-PENRYRFLREIIDAVKEVW 206 (337)
T ss_pred HHHHHH-cCCCEEEEccccchHHHHhcCC--ccCCcCCCCCCC-HHHHHHHHHHHHHHHHHhc
Confidence 555555 7999999999863211111000 011112223332 2335678888888888764
No 127
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=88.90 E-value=2.9 Score=33.80 Aligned_cols=65 Identities=28% Similarity=0.304 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHHc--CCEEEEEeeccccCCCccccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q psy9004 46 TPEQLKYLVDECHKA--GLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNL 123 (237)
Q Consensus 46 t~~~l~~lv~~~H~~--Gi~VilD~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~ 123 (237)
..+.....++++|++ |+||++-+--...... + --..+++.|+.+.+.+
T Consensus 47 ~~~~~~~~i~~l~~~~~g~kv~~sigg~~~~~~---------------~---------------~~~~~~~~~~~f~~~~ 96 (210)
T cd00598 47 SEEPLKGALEELASKKPGLKVLISIGGWTDSSP---------------F---------------TLASDPASRAAFANSL 96 (210)
T ss_pred ccHHHHHHHHHHHHhCCCCEEEEEEcCCCCCCC---------------c---------------hhhcCHHHHHHHHHHH
Confidence 345567778888887 9999987631110000 0 1125678889899999
Q ss_pred HHHHHhCCCcEEEeccc
Q psy9004 124 RWYLEEYQFDGFRFDGV 140 (237)
Q Consensus 124 ~~w~~~~giDGfR~D~~ 140 (237)
..+++++++||+-+|--
T Consensus 97 ~~~v~~~~~DGidiD~E 113 (210)
T cd00598 97 VSFLKTYGFDGVDIDWE 113 (210)
T ss_pred HHHHHHcCCCceEEeee
Confidence 89999999999999964
No 128
>COG3345 GalA Alpha-galactosidase [Carbohydrate transport and metabolism]
Probab=88.57 E-value=0.78 Score=43.13 Aligned_cols=131 Identities=13% Similarity=0.036 Sum_probs=88.2
Q ss_pred ChHHhhHHHHHcCccc-----cCccCCCCCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCCcccc
Q psy9004 7 GTPEQLKYLVDECHKA-----GLFGTPEQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG 80 (237)
Q Consensus 7 Gl~~~L~yl~~lGv~~-----pi~~~~~~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~ 80 (237)
-|++.++..|+.|+.- +.|....+.--+..|++.. ..|++ .+..||++.|++|++-=+++.|--++.++.
T Consensus 310 ~ile~vk~akk~gvE~FvlDDGwfg~rndd~~slGDWlv~seKfPs--giE~li~~I~e~Gl~fGIWlePemvs~dSd-- 385 (687)
T COG3345 310 EILENVKEAKKFGVELFVLDDGWFGGRNDDLKSLGDWLVNSEKFPS--GIEELIEAIAENGLIFGIWLEPEMVSEDSD-- 385 (687)
T ss_pred HHHHHHHHHhhcCeEEEEEccccccccCcchhhhhceecchhhccc--cHHHHHHHHHHcCCccceeecchhcccchH--
Confidence 5778888889999643 4555444444467788877 88875 357788899999999999999888877631
Q ss_pred ccCCCCCCCCccCCCCCCCCCC--CCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccCcccc
Q psy9004 81 LNEFDGTQACFFHDGPRGTHPL--WDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLY 145 (237)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~~l~~ 145 (237)
.-..+|.|+... .|++-. -+...++.+||.|..++.+.+...+-.--||-+|-|.-.++.+
T Consensus 386 ---lfrqHPDWvvk~-~G~p~~~~Rnqyvl~~s~p~vv~~l~~~l~qll~~~~v~ylkwdmnr~l~k 448 (687)
T COG3345 386 ---LFRQHPDWVVKV-NGYPLMAGRNQYVLWLSNPIVVLDLSEDLVQLLLFHLVSYLKWDMNRELFK 448 (687)
T ss_pred ---HHhhCCCeEEec-CCccccccccchhhhccChHHHHHhhhHHHHHHHhhhHHHHHHHhCcceee
Confidence 122456776542 222211 1233578999999999887765544335677777777766643
No 129
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=88.54 E-value=15 Score=32.79 Aligned_cols=128 Identities=15% Similarity=0.163 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccCCCccccccCCCCCCCCccCCCCCCCC--CCCCCCCCCCCCH---HHHHHHHH
Q psy9004 47 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTH--PLWDSRLFNYSEI---EVLRFLLS 121 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ln~~~p---~v~~~i~~ 121 (237)
.+.++++++++|++|-++++- ++|.+........ .+. ..+ . +.... .......--.+.. ++.+.+.+
T Consensus 77 i~~~~~l~~~vh~~G~~i~~Q--L~h~G~~~~~~~~--~~~-~~~-~--ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~ 148 (353)
T cd04735 77 IPGLRKLAQAIKSKGAKAILQ--IFHAGRMANPALV--PGG-DVV-S--PSAIAAFRPGAHTPRELTHEEIEDIIDAFGE 148 (353)
T ss_pred hHHHHHHHHHHHhCCCeEEEE--ecCCCCCCCcccc--CCC-cee-c--CCCCcccCCCCCCCccCCHHHHHHHHHHHHH
Confidence 578999999999999999866 6888775211100 000 000 0 00000 0000000011222 34444455
Q ss_pred HHHHHHHhCCCcEEEecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhhCC
Q psy9004 122 NLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYP 186 (237)
Q Consensus 122 ~~~~w~~~~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p 186 (237)
..+.-.+ .|+||+-+-+++.-+-.+.-.+ ....-...+|++ -.....|+.++.+++++.-+
T Consensus 149 aA~~a~~-aGfDgVeih~ahGyLl~qFlsp--~~N~R~D~yGGs-lenR~r~~~eii~~vr~~vg 209 (353)
T cd04735 149 ATRRAIE-AGFDGVEIHGANGYLIQQFFSP--HSNRRTDEWGGS-LENRMRFPLAVVKAVQEVID 209 (353)
T ss_pred HHHHHHH-cCCCEEEEccccchHHHHhcCC--ccCCCCcccCCc-HHHHHHHHHHHHHHHHHHhc
Confidence 5555555 7999999998763211111100 001111223333 23456788888888887653
No 130
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=88.03 E-value=18 Score=31.94 Aligned_cols=138 Identities=16% Similarity=0.149 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccCCCccccccCCCCC--------CCCccCCCCCCCCCCCCCCCCCCCCH---HH
Q psy9004 47 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGT--------QACFFHDGPRGTHPLWDSRLFNYSEI---EV 115 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ln~~~p---~v 115 (237)
.+.|++|++++|+.|-++++- ++|.+...........+. ...-+..........+.. .-..+.. .+
T Consensus 76 ~~~~~~l~~~vh~~G~~~~~Q--L~H~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~~~~~~~~~~-p~~mt~~eI~~i 152 (336)
T cd02932 76 IEALKRIVDFIHSQGAKIGIQ--LAHAGRKASTAPPWEGGGPLLPPGGGGWQVVAPSAIPFDEGWPT-PRELTREEIAEV 152 (336)
T ss_pred HHHHHHHHHHHHhcCCcEEEE--ccCCCcCCCCCCCccccccccccccCCCceeCCCCCcCCCCCCC-CCcCCHHHHHHH
Confidence 578999999999999999888 567776521100000000 000000000000000000 0112223 34
Q ss_pred HHHHHHHHHHHHHhCCCcEEEecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhhC-CCeEEE
Q psy9004 116 LRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKY-PEIITI 191 (237)
Q Consensus 116 ~~~i~~~~~~w~~~~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-p~~~~i 191 (237)
.+.+.+.++...+ .|+||+-+-++..-+-.+.=.+. ...-...+|++ -.....|..++.+.+++.. |++.+.
T Consensus 153 i~~~~~aA~~a~~-aGfDgVei~~~~gyLl~qFlsp~--~N~R~D~yGgs-l~nr~rf~~eiv~aIR~~vG~d~~v~ 225 (336)
T cd02932 153 VDAFVAAARRAVE-AGFDVIEIHAAHGYLLHQFLSPL--SNKRTDEYGGS-LENRMRFLLEVVDAVRAVWPEDKPLF 225 (336)
T ss_pred HHHHHHHHHHHHH-cCCCEEEEccccccHHHHhcCCc--cCCCCcccCCC-HHHHhHHHHHHHHHHHHHcCCCceEE
Confidence 4455566677766 79999999987521101000000 00111122332 2335677888888888765 454433
No 131
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=87.99 E-value=2.9 Score=35.63 Aligned_cols=69 Identities=16% Similarity=0.090 Sum_probs=44.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCCccccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLS 121 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~ 121 (237)
+..+...++.+=|++|+++|+||++-+ .--+.. . |. .+ -++++-|+.+.+
T Consensus 53 ~~~~~~~~~~~~i~~~~~~g~KVllSi--GG~~~~-------------~-fs-------------~~-a~~~~~r~~f~~ 102 (256)
T cd06546 53 PDHPRFTTLWTELAILQSSGVKVMGML--GGAAPG-------------S-FS-------------RL-DDDDEDFERYYG 102 (256)
T ss_pred CCcchhhHHHHHHHHHHhCCCEEEEEE--CCCCCC-------------C-cc-------------cc-cCCHHHHHHHHH
Confidence 344444566666778999999999864 110000 0 10 01 135666777777
Q ss_pred HHHHHHHhCCCcEEEeccc
Q psy9004 122 NLRWYLEEYQFDGFRFDGV 140 (237)
Q Consensus 122 ~~~~w~~~~giDGfR~D~~ 140 (237)
.+..+++++++||+-||-=
T Consensus 103 s~~~~~~~~~~DGiDiDwE 121 (256)
T cd06546 103 QLRDMIRRRGLDGLDLDVE 121 (256)
T ss_pred HHHHHHHHhCCCceEEeee
Confidence 7778888899999999853
No 132
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=87.48 E-value=10 Score=32.90 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEEE
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLD 67 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD 67 (237)
.-.+|.+-|+.|+++|+||||-
T Consensus 57 ~c~~~~~dI~~cq~~G~KVlLS 78 (280)
T cd02877 57 NCPQLGADIKHCQSKGKKVLLS 78 (280)
T ss_pred cchhHHHHHHHHHHCCCEEEEE
Confidence 3568999999999999999996
No 133
>KOG2499|consensus
Probab=87.29 E-value=4.3 Score=37.68 Aligned_cols=76 Identities=18% Similarity=0.128 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEe-eccccCCCccccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDV-VHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLR 124 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~-v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~ 124 (237)
|.+|.+++|+=|+-||||||..+ +|.|++.- +....+-.-++|=... ..+. ...+|..++..-+.|.+++.
T Consensus 248 T~eDv~evV~yarlRGIRVlpEfD~PgHt~sW---g~g~~~fl~p~~~~~~---~~~~--~gplnP~~n~tydvls~i~~ 319 (542)
T KOG2499|consen 248 TREDVSEVVEYARLRGIRVLPEFDTPGHTGSW---GPGYPDFLTPCWSSFE---VQPP--FGPLNPTNNHTYDVLSEIFE 319 (542)
T ss_pred cHHHHHHHHHHHHhccceeeecccCCcccccc---cCCCCcccCCcccccc---cCCC--CcCCCCCchhHHHHHHHHHH
Confidence 58999999999999999999988 58998872 2121110111221111 0111 12488888888888877777
Q ss_pred HHHHh
Q psy9004 125 WYLEE 129 (237)
Q Consensus 125 ~w~~~ 129 (237)
.-.+.
T Consensus 320 dv~ev 324 (542)
T KOG2499|consen 320 DVSEV 324 (542)
T ss_pred HHHHh
Confidence 66653
No 134
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=87.29 E-value=20 Score=31.87 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccCCC
Q psy9004 47 PEQLKYLVDECHKAGLYVLLDVVHSHASKN 76 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~ 76 (237)
.+.|++|++++|+.|-++++- ++|.+..
T Consensus 76 i~~lr~la~~vh~~ga~~~~Q--L~H~G~~ 103 (338)
T cd02933 76 VEGWKKVTDAVHAKGGKIFLQ--LWHVGRV 103 (338)
T ss_pred HHHHHHHHHHHHhcCCeEEEE--cccCccC
Confidence 468999999999999999987 5687765
No 135
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=86.81 E-value=2.7 Score=36.99 Aligned_cols=96 Identities=17% Similarity=0.154 Sum_probs=46.5
Q ss_pred HHHHHHHHHcCCEEEEEeeccccCCCccccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhC
Q psy9004 51 KYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEY 130 (237)
Q Consensus 51 ~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~~w~~~~ 130 (237)
...|++||++|++|+==+.+.+-+.. .....-+.+ ... ..-.+. +-|...++.|
T Consensus 45 ~~widaAHrnGV~vLGTiife~~~~~-~~~~~ll~~--------~~~-------------g~~~~A----~kLi~ia~~y 98 (311)
T PF03644_consen 45 AGWIDAAHRNGVKVLGTIIFEWGGGA-EWCEELLEK--------DED-------------GSFPYA----DKLIEIAKYY 98 (311)
T ss_dssp HHHHHHHHHTT--EEEEEEEEEE--H-HHHHHHT-----------TT-------------S--HHH----HHHHHHHHHH
T ss_pred chhHHHHHhcCceEEEEEEecCCchH-HHHHHHHcC--------Ccc-------------cccHHH----HHHHHHHHHc
Confidence 45789999999999887766333211 000000000 000 011223 3344445679
Q ss_pred CCcEEEecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhhCCCeEEE
Q psy9004 131 QFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITI 191 (237)
Q Consensus 131 giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~i 191 (237)
|+||+=+-.=..+.. ...-..-..|++++++.+++ .|+..++
T Consensus 99 GFDGw~iN~E~~~~~------------------~~~~~~l~~F~~~l~~~~~~-~~~~~v~ 140 (311)
T PF03644_consen 99 GFDGWLINIETPLSG------------------PEDAENLIDFLKYLRKEAHE-NPGSEVI 140 (311)
T ss_dssp T--EEEEEEEESSTT------------------GGGHHHHHHHHHHHHHHHHH-T-T-EEE
T ss_pred CCCceEEEecccCCc------------------hhHHHHHHHHHHHHHHHhhc-CCCcEEE
Confidence 999998854332200 00113347899999999999 7776554
No 136
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=83.39 E-value=2 Score=38.17 Aligned_cols=60 Identities=20% Similarity=0.321 Sum_probs=45.1
Q ss_pred CcCChHHhhHHHHHcCccccCccCCCCCCCCccccccc---CCCC-----------CHHHHHHHHHHHHHcCCEEEEEe
Q psy9004 4 NGFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA---GLFG-----------TPEQLKYLVDECHKAGLYVLLDV 68 (237)
Q Consensus 4 ~~~Gl~~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v---~~~G-----------t~~~l~~lv~~~H~~Gi~VilD~ 68 (237)
=|+|=.+.|..+++.|+..|+.-.. -+.|-++| ..+| +.++|++|++.||+.||.+++.|
T Consensus 164 ~F~Gs~e~L~~vr~~~v~lPvLrKD-----FIID~yQI~eAr~~GADAVLLIaaiL~~~~L~~l~~~A~~LGme~LVEV 237 (338)
T PLN02460 164 YFQGSFENLEAIRNAGVKCPLLCKE-----FIVDAWQIYYARSKGADAILLIAAVLPDLDIKYMLKICKSLGMAALIEV 237 (338)
T ss_pred cCCCCHHHHHHHHHcCCCCCEeecc-----ccCCHHHHHHHHHcCCCcHHHHHHhCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 3788888999999988888887655 23333333 1222 36799999999999999999985
No 137
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=82.77 E-value=17 Score=31.66 Aligned_cols=61 Identities=16% Similarity=0.123 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccCCCccccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy9004 47 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWY 126 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~~w 126 (237)
...+..-|++|+++|.+||+-+ ..-.. ..+. .+..-++.+.+.+...
T Consensus 53 ~~~~~~~i~~lk~~G~kViiS~--GG~~g--------------~~~~-----------------~~~~~~~~~~~a~~~~ 99 (294)
T cd06543 53 GGWIKSDIAALRAAGGDVIVSF--GGASG--------------TPLA-----------------TSCTSADQLAAAYQKV 99 (294)
T ss_pred chhHHHHHHHHHHcCCeEEEEe--cCCCC--------------Cccc-----------------cCcccHHHHHHHHHHH
Confidence 5677888999999999999842 11110 0000 0234456677777778
Q ss_pred HHhCCCcEEEeccc
Q psy9004 127 LEEYQFDGFRFDGV 140 (237)
Q Consensus 127 ~~~~giDGfR~D~~ 140 (237)
+++||+||+-||-=
T Consensus 100 i~~y~~dgiDfDiE 113 (294)
T cd06543 100 IDAYGLTHLDFDIE 113 (294)
T ss_pred HHHhCCCeEEEecc
Confidence 88899999999853
No 138
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=82.57 E-value=3.1 Score=36.47 Aligned_cols=60 Identities=13% Similarity=0.145 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhhC
Q psy9004 111 SEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKY 185 (237)
Q Consensus 111 ~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 185 (237)
++|+.|+.+++.+..+++++|+||+-+|.=..... + +. ......-..|++++++++++..
T Consensus 88 ~~~~~R~~fi~s~~~~~~~~~~DGidiD~we~p~~------~---~~------~~d~~~~~~~l~el~~~l~~~~ 147 (318)
T cd02876 88 NDEQEREKLIKLLVTTAKKNHFDGIVLEVWSQLAA------Y---GV------PDKRKELIQLVIHLGETLHSAN 147 (318)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCcEEEechhhhcc------c---CC------HHHHHHHHHHHHHHHHHHhhcC
Confidence 47899999999998889889999999983111100 0 00 0001223679999999887653
No 139
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=82.20 E-value=5.5 Score=37.18 Aligned_cols=88 Identities=14% Similarity=0.175 Sum_probs=52.8
Q ss_pred HHhhHHHHHcCccccCccCCCCCCCCccccccc-CCC--C--C---HHHHHHHHHHHHHcCCEEEEEeeccccCCCcccc
Q psy9004 9 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA-GLF--G--T---PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG 80 (237)
Q Consensus 9 ~~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v-~~~--G--t---~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~ 80 (237)
.+-++-+++||+++ +. -...+..| |.- + + .+=..++|++|+++||++|+.+. |-.-
T Consensus 74 ~eDi~l~~~lG~~~--yR-------~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~--H~~~----- 137 (474)
T PRK09852 74 KEDIALMAEMGFKV--FR-------TSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLC--HFDV----- 137 (474)
T ss_pred HHHHHHHHHcCCCe--EE-------eeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEee--CCCC-----
Confidence 45678899999987 11 11233444 431 1 2 45578999999999999998854 4332
Q ss_pred ccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCC
Q psy9004 81 LNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQ 131 (237)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~~w~~~~g 131 (237)
|.|+.... --+.|+++.+.+.+..+..+++||
T Consensus 138 --------P~~l~~~~-----------GGW~~~~~~~~F~~ya~~~~~~fg 169 (474)
T PRK09852 138 --------PMHLVTEY-----------GSWRNRKMVEFFSRYARTCFEAFD 169 (474)
T ss_pred --------CHHHHHhc-----------CCCCCHHHHHHHHHHHHHHHHHhc
Confidence 22221110 113457777777777666666554
No 140
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=81.63 E-value=6.9 Score=34.31 Aligned_cols=56 Identities=18% Similarity=0.217 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhh
Q psy9004 111 SEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDK 184 (237)
Q Consensus 111 ~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 184 (237)
.+++.|+.+++.+..|++++|.||+-+|--. .. .. + .....-..|+++++..+.+.
T Consensus 87 ~~~~~r~~fi~~i~~~~~~~~~DGidiDwE~-~~--------~~--------~-~d~~~~~~ll~~lr~~l~~~ 142 (334)
T smart00636 87 SDPASRKKFIDSIVSFLKKYGFDGIDIDWEY-PG--------AR--------G-DDRENYTALLKELREALDKE 142 (334)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEECCcC-CC--------CC--------c-cHHHHHHHHHHHHHHHHHHh
Confidence 5688999999999999999999999999532 10 00 0 01123467889999888764
No 141
>PLN03231 putative alpha-galactosidase; Provisional
Probab=81.16 E-value=41 Score=30.26 Aligned_cols=93 Identities=14% Similarity=0.099 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecc--ccCCCccccccCCCCCCCCccCCCC---CCCCCCCCCC---CCCCCCHHHHHH
Q psy9004 47 PEQLKYLVDECHKAGLYVLLDVVHS--HASKNVLDGLNEFDGTQACFFHDGP---RGTHPLWDSR---LFNYSEIEVLRF 118 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~VilD~v~n--h~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~---~ln~~~p~v~~~ 118 (237)
-.-||.|++.+|++|+|.=+=.... .++........-..++....+...+ ......|... .+|.++|..+++
T Consensus 85 ~~G~k~lADyvHs~GLKfGIY~~~G~~tca~~~~~pi~G~~Gs~g~~~~a~Dia~~~~~c~~~~~~~~~v~~~~~gaq~y 164 (357)
T PLN03231 85 GKGFAPIAAKVHALGLKLGIHVMRGISTTAVKKKTPILGAFKSNGHAWNAKDIALMDQACPWMQQCFVGVNTSSEGGKLF 164 (357)
T ss_pred ccCcHHHHHHHHhCCcceEEEecCCccchhcccCCccCCCCcccccccchhhhccccccccccccccccccccchhHHHH
Confidence 3469999999999999964433332 2221100000000111100010000 0012234332 468899999999
Q ss_pred HHHHHHHHHHhCCCcEEEeccc
Q psy9004 119 LLSNLRWYLEEYQFDGFRFDGV 140 (237)
Q Consensus 119 i~~~~~~w~~~~giDGfR~D~~ 140 (237)
+...++.+.+ .|||=+.+|..
T Consensus 165 ~~~~a~~fA~-WGVDylK~D~c 185 (357)
T PLN03231 165 IQSLYDQYAS-WGIDFIKHDCV 185 (357)
T ss_pred HHHHHHHHHH-hCCCEEeeccc
Confidence 9999999988 99999999975
No 142
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=80.75 E-value=54 Score=32.53 Aligned_cols=133 Identities=14% Similarity=0.133 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHc-CCEEEEEeeccccCCCccccccCCCCC-----CCCccCCCCCCCCCCCC-CCCCCCCCH---HHH
Q psy9004 47 PEQLKYLVDECHKA-GLYVLLDVVHSHASKNVLDGLNEFDGT-----QACFFHDGPRGTHPLWD-SRLFNYSEI---EVL 116 (237)
Q Consensus 47 ~~~l~~lv~~~H~~-Gi~VilD~v~nh~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~ln~~~p---~v~ 116 (237)
.+.++++++++|+. |-++++-+ +|.+........ ..+. ...|....+......-. ...-..+.. ++.
T Consensus 474 i~~~~~~~~~vh~~gg~~i~~QL--~h~Gr~~~~~~~-~~~~~~~~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~~i 550 (765)
T PRK08255 474 EAAWKRIVDFVHANSDAKIGIQL--GHSGRKGSTRLG-WEGIDEPLEEGNWPLISASPLPYLPGSQVPREMTRADMDRVR 550 (765)
T ss_pred HHHHHHHHHHHHhcCCceEEEEc--cCCccccccccc-ccccccccccCCCceeCCCCCcCCCCCCCCCcCCHHHHHHHH
Confidence 46899999999999 69998884 888775211100 0000 00010000000000000 000011222 234
Q ss_pred HHHHHHHHHHHHhCCCcEEEecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhhCC
Q psy9004 117 RFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYP 186 (237)
Q Consensus 117 ~~i~~~~~~w~~~~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p 186 (237)
+.+.+..+.-.+ .|+||+-+-+++.-+-.+.=.+ ....-...+|++ -.....|+.++.+++++..+
T Consensus 551 ~~f~~aA~~a~~-aGfDgveih~ahGyLl~qFlsp--~~N~RtD~yGGs-lenR~r~~~eiv~~ir~~~~ 616 (765)
T PRK08255 551 DDFVAAARRAAE-AGFDWLELHCAHGYLLSSFISP--LTNQRTDEYGGS-LENRLRYPLEVFRAVRAVWP 616 (765)
T ss_pred HHHHHHHHHHHH-cCCCEEEEecccchHHHHhcCC--CCCCCCCCCCCC-HHHHhHHHHHHHHHHHHhcC
Confidence 444555555555 7999999999853211111000 001111222332 12356788888888888764
No 143
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=80.75 E-value=41 Score=29.96 Aligned_cols=128 Identities=13% Similarity=0.117 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccCCCccccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCH---HHHHHHHHHH
Q psy9004 47 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEI---EVLRFLLSNL 123 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p---~v~~~i~~~~ 123 (237)
.+.++++++++|+.|-++++-+ +|.+...... ... .+.-. ..+......-..+.. ++.+.+.+..
T Consensus 76 i~~~~~l~~~vh~~g~~~~~QL--~h~G~~~~~~-~~~---~ps~~------~~~~~~~~p~~mt~~eI~~i~~~f~~aA 143 (353)
T cd02930 76 AAGHRLITDAVHAEGGKIALQI--LHAGRYAYHP-LCV---APSAI------RAPINPFTPRELSEEEIEQTIEDFARCA 143 (353)
T ss_pred HHHHHHHHHHHHHcCCEEEeec--cCCCCCCCCC-CCc---CCCCC------CCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 6789999999999999999884 5877652110 000 00000 000000000112223 3344455555
Q ss_pred HHHHHhCCCcEEEecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhhCC-CeEE
Q psy9004 124 RWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYP-EIIT 190 (237)
Q Consensus 124 ~~w~~~~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p-~~~~ 190 (237)
+.-.+ .|+||+-+-++..-+-.+.=.+ .....+..+|++ -.....|..++.+++++.-+ ++.+
T Consensus 144 ~~a~~-aGfDgVeih~ahGyLl~qFlsp--~~N~RtD~yGGs-lenR~r~~~eiv~aIR~~vG~d~~v 207 (353)
T cd02930 144 ALARE-AGYDGVEIMGSEGYLINQFLAP--RTNKRTDEWGGS-FENRMRFPVEIVRAVRAAVGEDFII 207 (353)
T ss_pred HHHHH-cCCCEEEEecccchHHHHhcCC--ccCCCcCccCCC-HHHHhHHHHHHHHHHHHHcCCCceE
Confidence 55555 7999999966542111110000 001111223332 22346777888888888654 4443
No 144
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=79.94 E-value=5.2 Score=34.82 Aligned_cols=54 Identities=19% Similarity=0.186 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhh
Q psy9004 111 SEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDK 184 (237)
Q Consensus 111 ~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 184 (237)
++|+.|+.+++.+..+++++|+||+-||.-. +.. .....-..|++++++++++.
T Consensus 84 ~~~~~R~~fi~~iv~~~~~~~~dGidiD~E~-~~~-------------------~d~~~~~~fl~eL~~~l~~~ 137 (298)
T cd06549 84 ADPSARAKFIANIAAYLERNQADGIVLDFEE-LPA-------------------DDLPKYVAFLSELRRRLPAQ 137 (298)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCCEEEecCC-CCh-------------------hHHHHHHHHHHHHHHHhhhc
Confidence 5789999999988888888999999999742 200 00123467999999998875
No 145
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=78.11 E-value=11 Score=33.63 Aligned_cols=65 Identities=17% Similarity=0.231 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEecccCccccccCCCCCCCCCCcccccCccCC-hhHHHHHHHHHHHHHhhCCCeE
Q psy9004 111 SEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVD-TDALIYLMVANKFLHDKYPEII 189 (237)
Q Consensus 111 ~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~p~~~ 189 (237)
.+++.|+.+++.+..|++++|+||+-||--..- ... +...+ ..-..|++++++++++..++..
T Consensus 92 ~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~p~---------~~~-------~~~~d~~~~~~ll~~lr~~l~~~~~~~~ 155 (362)
T cd02872 92 ASPENRKTFIKSAIAFLRKYGFDGLDLDWEYPG---------QRG-------GPPEDKENFVTLLKELREAFEPEAPRLL 155 (362)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeeeeeeccc---------cCC-------CCHHHHHHHHHHHHHHHHHHHhhCcCeE
Confidence 467889999999999999999999999943211 000 00011 2346789999999887644544
Q ss_pred EE
Q psy9004 190 TI 191 (237)
Q Consensus 190 ~i 191 (237)
+.
T Consensus 156 ls 157 (362)
T cd02872 156 LT 157 (362)
T ss_pred EE
Confidence 33
No 146
>PLN03059 beta-galactosidase; Provisional
Probab=77.47 E-value=13 Score=37.10 Aligned_cols=100 Identities=14% Similarity=0.082 Sum_probs=56.9
Q ss_pred HHhhHHHHHcCccccCccCCCCCCC---CcccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCCccccccCCC
Q psy9004 9 PEQLKYLVDECHKAGLFGTPEQLKY---LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFD 85 (237)
Q Consensus 9 ~~~L~yl~~lGv~~pi~~~~~~~gY---~~~d~~~v~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~~ 85 (237)
.++|..+|++|+++ |-. .-.|.+ .+.. -.|-+..||.+|++.|++.||.||+=.=|=-++.- .+
T Consensus 62 ~d~L~k~Ka~GlNt-V~t-YV~Wn~HEp~~G~----~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw------~~- 128 (840)
T PLN03059 62 PDLIQKAKDGGLDV-IQT-YVFWNGHEPSPGN----YYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEW------NF- 128 (840)
T ss_pred HHHHHHHHHcCCCe-EEE-EecccccCCCCCe----eeccchHHHHHHHHHHHHcCCEEEecCCcceeeee------cC-
Confidence 36788999999887 211 001111 1111 23446889999999999999999997433222221 01
Q ss_pred CCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q psy9004 86 GTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEE 129 (237)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~~w~~~ 129 (237)
|-.|.|....+ .-.+..++|...+.+..++...+..
T Consensus 129 GGlP~WL~~~~--------~i~~Rs~d~~fl~~v~~~~~~l~~~ 164 (840)
T PLN03059 129 GGFPVWLKYVP--------GIEFRTDNGPFKAAMQKFTEKIVDM 164 (840)
T ss_pred CCCchhhhcCC--------CcccccCCHHHHHHHHHHHHHHHHH
Confidence 11233432211 1136667887777666666666654
No 147
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=77.36 E-value=10 Score=32.96 Aligned_cols=53 Identities=17% Similarity=0.140 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEecccCccccccCCCCCCCCCCcccccCccCC-hhHHHHHHHHHHHHHh
Q psy9004 111 SEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVD-TDALIYLMVANKFLHD 183 (237)
Q Consensus 111 ~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~ 183 (237)
++++.|+.+++.+..+++++|+||+-||-=... ...+ ..-..|++++++++++
T Consensus 88 ~~~~~R~~fi~siv~~l~~~~fDGidiDWE~P~--------------------~~~d~~n~~~ll~elr~~l~~ 141 (299)
T cd02879 88 SDPTARKAFINSSIKVARKYGFDGLDLDWEFPS--------------------SQVEMENFGKLLEEWRAAVKD 141 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceeecccCCC--------------------ChhHHHHHHHHHHHHHHHHHH
Confidence 578899999999989998899999999943100 0011 2236789999998874
No 148
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=77.10 E-value=2.6 Score=36.63 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEee
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVV 69 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v 69 (237)
++++++++.+-||++||+|.+|-.
T Consensus 143 s~~el~ai~~~a~~~gl~lhmDGA 166 (290)
T PF01212_consen 143 SLEELRAISELAREHGLPLHMDGA 166 (290)
T ss_dssp -HHHHHHHHHHHHHHT-EEEEEET
T ss_pred CHHHHHHHHHHHHhCceEEEEehh
Confidence 389999999999999999999964
No 149
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=76.18 E-value=16 Score=31.74 Aligned_cols=95 Identities=15% Similarity=0.155 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccCCCccccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRW 125 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~~ 125 (237)
+.+.+..-|..|+++||+|..-+.++=.+ |.++.|.+.++.
T Consensus 166 d~~~y~dav~r~rkrgIkvc~HiI~GLPg---------------------------------------E~~~~mleTak~ 206 (312)
T COG1242 166 DFACYVDAVKRLRKRGIKVCTHLINGLPG---------------------------------------ETRDEMLETAKI 206 (312)
T ss_pred chHHHHHHHHHHHHcCCeEEEEEeeCCCC---------------------------------------CCHHHHHHHHHH
Confidence 46788899999999999998776655222 335578888886
Q ss_pred HHHhCCCcEEEecccCccccccCCCCCCCC-CCcccccCccCChhHHHHHHHHHHHHHhhCCCeE
Q psy9004 126 YLEEYQFDGFRFDGVTSMLYHNHGCGEGFS-GHYDEYFGLNVDTDALIYLMVANKFLHDKYPEII 189 (237)
Q Consensus 126 w~~~~giDGfR~D~~~~l~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~ 189 (237)
... .||||+.+---.-+ +.+. +.+.+. +.+ .-.+-.++.+.+.+.+.-.-|+++
T Consensus 207 v~~-~~v~GIKlH~Lhvv-kgT~-m~k~Y~~G~l-------~~ls~eeYv~~~~d~le~lpp~vv 261 (312)
T COG1242 207 VAE-LGVDGIKLHPLHVV-KGTP-MEKMYEKGRL-------KFLSLEEYVELVCDQLEHLPPEVV 261 (312)
T ss_pred HHh-cCCceEEEEEEEEe-cCCh-HHHHHHcCCc-------eeccHHHHHHHHHHHHHhCCcceE
Confidence 665 89999999765433 2210 011110 111 112335677777777777766654
No 150
>KOG4175|consensus
Probab=76.00 E-value=3.5 Score=33.98 Aligned_cols=74 Identities=19% Similarity=0.118 Sum_probs=49.9
Q ss_pred CCCcCChHHhhHHHHHcCccccCccCCCCC---CCCccccccc-CCCCC---------HHHHHHHHHHHHHcCCEEEEEe
Q psy9004 2 RTNGFGTPEQLKYLVDECHKAGLFGTPEQL---KYLVDECHKA-GLFGT---------PEQLKYLVDECHKAGLYVLLDV 68 (237)
Q Consensus 2 ~~~~~Gl~~~L~yl~~lGv~~pi~~~~~~~---gY~~~d~~~v-~~~Gt---------~~~l~~lv~~~H~~Gi~VilD~ 68 (237)
++++..+++.+...+..|++.||.....|. .|....|-++ ..-|- +++-..|-++|+++||.++.=+
T Consensus 76 g~tl~~i~emvk~ar~~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~gislvpLv 155 (268)
T KOG4175|consen 76 GTTLNSIIEMVKEARPQGVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKHGISLVPLV 155 (268)
T ss_pred CCcHHHHHHHHHHhcccCcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHHHHHhcCceEEEee
Confidence 356667888888888889999887654221 2334444433 33332 6888889999999999998877
Q ss_pred eccccCC
Q psy9004 69 VHSHASK 75 (237)
Q Consensus 69 v~nh~~~ 75 (237)
.+..+-.
T Consensus 156 aPsTtde 162 (268)
T KOG4175|consen 156 APSTTDE 162 (268)
T ss_pred CCCChHH
Confidence 6655443
No 151
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=75.57 E-value=11 Score=35.23 Aligned_cols=88 Identities=14% Similarity=0.137 Sum_probs=54.9
Q ss_pred HHhhHHHHHcCccccCccCCCCCCCCccccccc-CC--CC-----CHHHHHHHHHHHHHcCCEEEEEeeccccCCCcccc
Q psy9004 9 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA-GL--FG-----TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG 80 (237)
Q Consensus 9 ~~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v-~~--~G-----t~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~ 80 (237)
.+-++.+++||+++ +. -...+..| |. -| ..+=..+||++|+++||+.|+.+. |-.-
T Consensus 72 ~EDI~Lm~elG~~~--yR-------fSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~--H~dl----- 135 (477)
T PRK15014 72 KEDIKLFAEMGFKC--FR-------TSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLS--HFEM----- 135 (477)
T ss_pred HHHHHHHHHcCCCE--EE-------ecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEee--CCCC-----
Confidence 46678899999987 11 11234455 43 11 245578999999999999999854 4322
Q ss_pred ccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCC
Q psy9004 81 LNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQ 131 (237)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~~w~~~~g 131 (237)
|.|..... --+.|+++.+.+.+..+..+++||
T Consensus 136 --------P~~L~~~y-----------GGW~n~~~~~~F~~Ya~~~f~~fg 167 (477)
T PRK15014 136 --------PLHLVQQY-----------GSWTNRKVVDFFVRFAEVVFERYK 167 (477)
T ss_pred --------CHHHHHhc-----------CCCCChHHHHHHHHHHHHHHHHhc
Confidence 22221110 123567888888887777777664
No 152
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=73.99 E-value=31 Score=30.32 Aligned_cols=127 Identities=10% Similarity=0.173 Sum_probs=72.4
Q ss_pred hHHhhHHHHHcCccccCccCCCCCC---CCcccccccCCCCC---HHHHHHHHHHHHHcCCEEEEEeeccccCCCcc-cc
Q psy9004 8 TPEQLKYLVDECHKAGLFGTPEQLK---YLVDECHKAGLFGT---PEQLKYLVDECHKAGLYVLLDVVHSHASKNVL-DG 80 (237)
Q Consensus 8 l~~~L~yl~~lGv~~pi~~~~~~~g---Y~~~d~~~v~~~Gt---~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~-~~ 80 (237)
+-++..-|++-|+++-++..-+..| |.-.|-.. ...++ --|++-+|++|+++||.+|.-+|.---+.-.. ..
T Consensus 79 ~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~-~~~~sv~~f~Di~~~iKkaKe~giY~IARiVvFKD~~l~~~n~ 157 (400)
T COG1306 79 LDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEIN-KYTKSVNKFKDIEPVIKKAKENGIYAIARIVVFKDTILAKENP 157 (400)
T ss_pred HHHHHHHHHhCCCCEEEEEecCCCccEeccccchhh-hhhhccccccccHHHHHHHHhcCeEEEEEEEEeeeeeEEeecC
Confidence 4567778888898885554444333 22221110 11222 34678899999999999999987532221100 00
Q ss_pred c--cCCCCCCCCccCCCCC-----CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccC
Q psy9004 81 L--NEFDGTQACFFHDGPR-----GTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVT 141 (237)
Q Consensus 81 ~--~~~~~~~~~~~~~~~~-----~~~~~~~~~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~~~ 141 (237)
+ ..+.+ ...|=+-... .....| .|.-++.++++=+.+.+.-++ +|+|-+.||-+.
T Consensus 158 fk~av~~~-gKpw~~~~ngaLrKe~~~ehW----Vd~y~~~~WeYNvtIAKEa~~-fGfdEiQFDYIR 219 (400)
T COG1306 158 FKIAVYKD-GKPWKAFTNGALRKESDGEHW----VDAYDKNLWEYNVTIAKEAAK-FGFDEIQFDYIR 219 (400)
T ss_pred ceEEEEcC-CCcchhhhcccccccccceee----ecccchhhhhhhHHHHHHHHH-cCccceeeeEEE
Confidence 0 00000 0011000000 011112 455689999999999999888 999999999886
No 153
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=72.81 E-value=15 Score=31.99 Aligned_cols=57 Identities=19% Similarity=0.239 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhh
Q psy9004 112 EIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDK 184 (237)
Q Consensus 112 ~p~v~~~i~~~~~~w~~~~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 184 (237)
+++-|+.+++.+..+++++|+||+-||-=..-.. ++ ......-..|++++++.+++.
T Consensus 96 ~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~~----------~~------~~~~~~~~~~l~~L~~~l~~~ 152 (343)
T PF00704_consen 96 NPAKRQNFINNIVSFLKKYGFDGIDIDWEYPSSS----------GD------PQDKDNYTAFLKELRKALKRA 152 (343)
T ss_dssp SHHHHHHHHHHHHHHHHHHT-SEEEEEESSTTST----------SS------TTHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhhhhhcccCcceeeeeeeecccc----------cc------chhhhhhhhhhhhhhhhhccc
Confidence 5688899999999999999999999986542200 00 001123467999999888885
No 154
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=70.98 E-value=59 Score=27.40 Aligned_cols=109 Identities=17% Similarity=0.214 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccCCCccccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy9004 47 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWY 126 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~~w 126 (237)
.+...++++.|.++||+|-.=..+-|. ..|.|.... ..+++++.+.+.+...
T Consensus 15 ~~~~D~~~~~a~~~gi~v~gH~l~W~~-------------~~P~W~~~~---------------~~~~~~~~~~~~i~~v 66 (254)
T smart00633 15 FSGADAIVNFAKENGIKVRGHTLVWHS-------------QTPDWVFNL---------------SKETLLARLENHIKTV 66 (254)
T ss_pred hHHHHHHHHHHHHCCCEEEEEEEeecc-------------cCCHhhhcC---------------CHHHHHHHHHHHHHHH
Confidence 567888999999999999533222222 113443211 1456677777777777
Q ss_pred HHhCCCcEEEecccCccccccCCCCCCC-CCCcccccCccCChhHHHHHHHHHHHHHhhCCCeEEEEe
Q psy9004 127 LEEYQFDGFRFDGVTSMLYHNHGCGEGF-SGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAE 193 (237)
Q Consensus 127 ~~~~giDGfR~D~~~~l~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~i~E 193 (237)
+++|+=.....|.+....-.. + .++ ...|.+.+| .++++..-+.+++..|++.++=-
T Consensus 67 ~~ry~g~i~~wdV~NE~~~~~-~--~~~~~~~w~~~~G-------~~~i~~af~~ar~~~P~a~l~~N 124 (254)
T smart00633 67 VGRYKGKIYAWDVVNEALHDN-G--SGLRRSVWYQILG-------EDYIEKAFRYAREADPDAKLFYN 124 (254)
T ss_pred HHHhCCcceEEEEeeecccCC-C--cccccchHHHhcC-------hHHHHHHHHHHHHhCCCCEEEEe
Confidence 777763344577766432110 0 000 012333222 26788888889999999655443
No 155
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=69.99 E-value=9 Score=34.94 Aligned_cols=53 Identities=19% Similarity=0.285 Sum_probs=35.2
Q ss_pred HHhhHHHHHcCccc---cCccCCCCCCCCc-cccccc-CCC---CCHHHHHHHHHHHHHcCCEEEEEe
Q psy9004 9 PEQLKYLVDECHKA---GLFGTPEQLKYLV-DECHKA-GLF---GTPEQLKYLVDECHKAGLYVLLDV 68 (237)
Q Consensus 9 ~~~L~yl~~lGv~~---pi~~~~~~~gY~~-~d~~~v-~~~---Gt~~~l~~lv~~~H~~Gi~VilD~ 68 (237)
.+-+.++++.|+++ |+. |+. ...... |.+ ....-+.+.|+.|.++||+|++|+
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~-------~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~ 136 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIG-------YWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDL 136 (407)
T ss_pred hhHHHHHHHcCCcEEEcccc-------hhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEe
Confidence 66788999999987 443 211 111102 333 223367788999999999999995
No 156
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=69.22 E-value=4.7 Score=36.84 Aligned_cols=39 Identities=23% Similarity=0.372 Sum_probs=32.6
Q ss_pred cccc-CCCCCHHHHHHHHHHHHHcCCEEEEEee--ccccCCC
Q psy9004 38 CHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVV--HSHASKN 76 (237)
Q Consensus 38 ~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v--~nh~~~~ 76 (237)
+..+ ...|+..+++++++.||++|..|++|.+ +.|..-+
T Consensus 168 is~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq~~~h~~id 209 (405)
T COG0520 168 LSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPID 209 (405)
T ss_pred EECccccccccchHHHHHHHHHHcCCEEEEECccccCccCCC
Confidence 4456 7789999999999999999999999986 6666554
No 157
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=69.09 E-value=24 Score=31.05 Aligned_cols=90 Identities=14% Similarity=0.152 Sum_probs=52.9
Q ss_pred hhHHHHHcCccccCccCCCCCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCCccccccCCCCCCC
Q psy9004 11 QLKYLVDECHKAGLFGTPEQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQA 89 (237)
Q Consensus 11 ~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~~~~~~ 89 (237)
.+..+.+.|.++ -+=+|.+.-|.-..+..+ |.= ..++|++||++|++.|++.+.=+-|..
T Consensus 20 l~~f~~~~kmN~-YiYAPKdDpyhr~~Wre~Yp~~-el~~l~~L~~~a~~~~V~Fv~aisPg~----------------- 80 (306)
T PF07555_consen 20 LIRFLGRYKMNT-YIYAPKDDPYHRSKWREPYPEE-ELAELKELADAAKANGVDFVYAISPGL----------------- 80 (306)
T ss_dssp HHHHHHHTT--E-EEE--TT-TTTTTTTTS---HH-HHHHHHHHHHHHHHTT-EEEEEEBGTT-----------------
T ss_pred HHHHHHHcCCce-EEECCCCChHHHhhhcccCCHH-HHHHHHHHHHHHHHcCCEEEEEECccc-----------------
Confidence 344555667777 333344444555555544 321 257899999999999999887654431
Q ss_pred CccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEe
Q psy9004 90 CFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRF 137 (237)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~ 137 (237)
++.+++++..+.|+.-+....+ .||.-|-+
T Consensus 81 -----------------~~~~s~~~d~~~L~~K~~ql~~-lGvr~Fai 110 (306)
T PF07555_consen 81 -----------------DICYSSEEDFEALKAKFDQLYD-LGVRSFAI 110 (306)
T ss_dssp -----------------T--TSHHHHHHHHHHHHHHHHC-TT--EEEE
T ss_pred -----------------ccccCcHHHHHHHHHHHHHHHh-cCCCEEEE
Confidence 1334567888888888887777 89998876
No 158
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=69.06 E-value=76 Score=28.87 Aligned_cols=118 Identities=10% Similarity=0.148 Sum_probs=57.8
Q ss_pred HHHHHHHHHHcCCEEEEEeeccccCCCccccccCCCCCCCCccCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHH
Q psy9004 50 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYS-EIEVLRFLLSNLRWYLE 128 (237)
Q Consensus 50 l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~-~p~v~~~i~~~~~~w~~ 128 (237)
=+.|+++|+++|+..++=+ . .+.|.|+..+............|.-. ..+...||.++++++ +
T Consensus 106 QrwfL~~Ak~rGV~~f~aF-S---------------NSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~-~ 168 (384)
T PF14587_consen 106 QRWFLKAAKERGVNIFEAF-S---------------NSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHY-K 168 (384)
T ss_dssp HHHHHHHHHHTT---EEEE-----------------SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHcCCCeEEEe-e---------------cCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHH-H
Confidence 3558899999999876521 1 12233443322111111111122222 245667888999888 5
Q ss_pred hCCCcEEEecccCccccccCCCCCCCCCCcc--cccCcc-CChhHHHHHHHHHHHHHhhCCC-eEEEEecC
Q psy9004 129 EYQFDGFRFDGVTSMLYHNHGCGEGFSGHYD--EYFGLN-VDTDALIYLMVANKFLHDKYPE-IITIAEDV 195 (237)
Q Consensus 129 ~~giDGfR~D~~~~l~~~~~~~~~~~~~~~~--~~~g~~-~~~~~~~~~~~~~~~~~~~~p~-~~~i~E~~ 195 (237)
+. |+.|+.+.-+-. +...|. ...|.. .+.+...+++.+.+++++.... .++++|..
T Consensus 169 ~~---GI~f~~IsP~NE--------P~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~Ea~ 228 (384)
T PF14587_consen 169 KW---GINFDYISPFNE--------PQWNWAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACEAG 228 (384)
T ss_dssp CT---T--EEEEE--S---------TTS-GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEEES
T ss_pred hc---CCccceeCCcCC--------CCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecchh
Confidence 44 568888776521 223341 122222 2355678999999999998766 46667764
No 159
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=68.05 E-value=30 Score=31.08 Aligned_cols=66 Identities=11% Similarity=0.041 Sum_probs=39.1
Q ss_pred HHHHHHHHHHcCCEEEEEeecc--ccCCCccccccCCCCCCC-CccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy9004 50 LKYLVDECHKAGLYVLLDVVHS--HASKNVLDGLNEFDGTQA-CFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWY 126 (237)
Q Consensus 50 l~~lv~~~H~~Gi~VilD~v~n--h~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~~w 126 (237)
...+|++||++|++|+..-|=+ ..-. .+ .+|..... ..|. ..-+.+.+..+
T Consensus 280 ~~~~v~~Ah~~GL~V~~WTvr~~~~~~~------------~~~~~~~~~~~---------~~~~-----~~~~~~~~~~~ 333 (356)
T cd08560 280 PSEYAKAAKAAGLDIITWTLERSGPLAS------------GGGWYYQTIED---------VINN-----DGDMYNVLDVL 333 (356)
T ss_pred CHHHHHHHHHcCCEEEEEEeecCccccc------------Ccccccccccc---------cccc-----cccHHHHHHHH
Confidence 4689999999999999986622 1100 11 22221110 0000 12355666666
Q ss_pred HHhCCCcEEEecccC
Q psy9004 127 LEEYQFDGFRFDGVT 141 (237)
Q Consensus 127 ~~~~giDGfR~D~~~ 141 (237)
+.+.||||+=-|.+.
T Consensus 334 ~~~~GvDGvftD~p~ 348 (356)
T cd08560 334 ARDVGILGIFSDWPA 348 (356)
T ss_pred HHhcCCCEEEccCCC
Confidence 756899999998875
No 160
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=67.77 E-value=27 Score=32.53 Aligned_cols=87 Identities=16% Similarity=0.240 Sum_probs=55.8
Q ss_pred HHhhHHHHHcCccccCccCCCCCCCCccccccc-CC-CC-----CHHHHHHHHHHHHHcCCEEEEEeeccccCCCccccc
Q psy9004 9 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA-GL-FG-----TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL 81 (237)
Q Consensus 9 ~~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v-~~-~G-----t~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~ 81 (237)
.+-+.-+++||+++ |.. -.++.+| |. -| ..+=.++||++|.++||+.|+- +.|-.-
T Consensus 56 ~eDi~L~~~lG~~~--yRf-------SIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VT--L~H~dl------ 118 (467)
T TIGR01233 56 PVDLELAEEYGVNG--IRI-------SIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVT--LHHFDT------ 118 (467)
T ss_pred HHHHHHHHHcCCCE--EEE-------ecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEe--ccCCCC------
Confidence 45677889999987 110 1223344 43 11 2455789999999999999976 445322
Q ss_pred cCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCC
Q psy9004 82 NEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQ 131 (237)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~~w~~~~g 131 (237)
|.|.... --+.|+++.+++.+.++..+++||
T Consensus 119 -------P~~L~~~------------GGW~n~~~v~~F~~YA~~~f~~fg 149 (467)
T TIGR01233 119 -------PEALHSN------------GDFLNRENIEHFIDYAAFCFEEFP 149 (467)
T ss_pred -------cHHHHHc------------CCCCCHHHHHHHHHHHHHHHHHhC
Confidence 2333211 124678889999988888888876
No 161
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=66.80 E-value=8.2 Score=30.36 Aligned_cols=29 Identities=21% Similarity=0.375 Sum_probs=26.1
Q ss_pred cc-CCCCCHHHHHHHHHHHHHcCCEEEEEe
Q psy9004 40 KA-GLFGTPEQLKYLVDECHKAGLYVLLDV 68 (237)
Q Consensus 40 ~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~ 68 (237)
.| +..-|++.+.+++++++++|++||+=.
T Consensus 35 ~VvSAHRTPe~m~~ya~~a~~~g~~viIAg 64 (162)
T COG0041 35 RVVSAHRTPEKMFEYAEEAEERGVKVIIAG 64 (162)
T ss_pred EEEeccCCHHHHHHHHHHHHHCCCeEEEec
Confidence 45 788899999999999999999999864
No 162
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=66.27 E-value=27 Score=32.54 Aligned_cols=52 Identities=21% Similarity=0.248 Sum_probs=34.8
Q ss_pred HHhhHHHHHcCccccCccCCCCCCCCccccccc-CC-CC-----CHHHHHHHHHHHHHcCCEEEEEee
Q psy9004 9 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA-GL-FG-----TPEQLKYLVDECHKAGLYVLLDVV 69 (237)
Q Consensus 9 ~~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v-~~-~G-----t~~~l~~lv~~~H~~Gi~VilD~v 69 (237)
.+-++-+++||+++ |.- -..+.+| |. -| ..+=.++||++|.++||+.|+-+.
T Consensus 57 ~eDi~L~~~lG~~~--yRf-------SIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~ 115 (469)
T PRK13511 57 PEDLKLAEEFGVNG--IRI-------SIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLH 115 (469)
T ss_pred HHHHHHHHHhCCCE--EEe-------eccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 45678889999887 110 1223344 43 11 245578999999999999998753
No 163
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=66.24 E-value=32 Score=32.22 Aligned_cols=88 Identities=14% Similarity=0.176 Sum_probs=52.4
Q ss_pred HHhhHHHHHcCccccCccCCCCCCCCccccccc-CC--CC--C---HHHHHHHHHHHHHcCCEEEEEeeccccCCCcccc
Q psy9004 9 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA-GL--FG--T---PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG 80 (237)
Q Consensus 9 ~~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v-~~--~G--t---~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~ 80 (237)
.+-++-+++||+++ |.- -..+.+| |. -| + .+=..+||++|+++||+.|+-+- |-.-
T Consensus 76 ~eDi~Lm~~lG~~a--YRf-------SIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~--H~dl----- 139 (478)
T PRK09593 76 KEDIALFAEMGFKT--YRM-------SIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTIT--HFDC----- 139 (478)
T ss_pred HHHHHHHHHcCCCE--EEE-------ecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec--ccCC-----
Confidence 46678899999987 111 1233455 43 12 2 34578999999999999998653 4322
Q ss_pred ccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCC
Q psy9004 81 LNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQ 131 (237)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~~w~~~~g 131 (237)
|.|+.... --+.|+++.+.+.+.++..+++||
T Consensus 140 --------P~~L~~~~-----------GGW~n~~~v~~F~~YA~~~~~~fg 171 (478)
T PRK09593 140 --------PMHLIEEY-----------GGWRNRKMVGFYERLCRTLFTRYK 171 (478)
T ss_pred --------CHHHHhhc-----------CCCCChHHHHHHHHHHHHHHHHhc
Confidence 23322110 123466777777766666665554
No 164
>KOG0496|consensus
Probab=66.19 E-value=30 Score=33.41 Aligned_cols=97 Identities=16% Similarity=0.134 Sum_probs=57.7
Q ss_pred HhhHHHHHcCccc---cCccCCCCCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCCccccccCCC
Q psy9004 10 EQLKYLVDECHKA---GLFGTPEQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFD 85 (237)
Q Consensus 10 ~~L~yl~~lGv~~---pi~~~~~~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~~ 85 (237)
++|...|++|.++ .++-+ -|- ...- -.|.+.-||.+||++||+.|+.|+|=+=+=-++.- .+-
T Consensus 53 ~~i~k~k~~Gln~IqtYVfWn--~He-----p~~g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw------~~G 119 (649)
T KOG0496|consen 53 DLIKKAKAGGLNVIQTYVFWN--LHE-----PSPGKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEW------NFG 119 (649)
T ss_pred HHHHHHHhcCCceeeeeeecc--ccc-----CCCCcccccchhHHHHHHHHHHHCCeEEEecCCCeEEecc------cCC
Confidence 5677888889765 22111 011 1111 34567889999999999999999998664333331 111
Q ss_pred CCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy9004 86 GTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLE 128 (237)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~~w~~ 128 (237)
+ -|.|.+..+ .-.+..+|+....+|..+....+.
T Consensus 120 G-~P~wL~~~p--------g~~~Rt~nepfk~~~~~~~~~iv~ 153 (649)
T KOG0496|consen 120 G-LPWWLRNVP--------GIVFRTDNEPFKAEMERWTTKIVP 153 (649)
T ss_pred C-cchhhhhCC--------ceEEecCChHHHHHHHHHHHHHHH
Confidence 1 122222111 124667788888888777776666
No 165
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=66.05 E-value=20 Score=30.58 Aligned_cols=55 Identities=11% Similarity=0.125 Sum_probs=36.0
Q ss_pred HHhhHHHHHcCccccCccCCCCCCCCcccccccCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q psy9004 9 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDV 68 (237)
Q Consensus 9 ~~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v~~~Gt~~~l~~lv~~~H~~Gi~VilD~ 68 (237)
.+-...++++|+.. ++.+.....=.|.+|. -+ +.+.|+.|.+.|++.||.++-++
T Consensus 32 ~~~a~~~~~~g~~~-~r~g~~kpRts~~sf~---G~-G~~gl~~L~~~~~~~Gl~~~Tev 86 (250)
T PRK13397 32 RLAASSAKKLGYNY-FRGGAYKPRTSAASFQ---GL-GLQGIRYLHEVCQEFGLLSVSEI 86 (250)
T ss_pred HHHHHHHHHcCCCE-EEecccCCCCCCcccC---CC-CHHHHHHHHHHHHHcCCCEEEee
Confidence 34455688999876 5555411111222222 22 36799999999999999999985
No 166
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=65.78 E-value=9.3 Score=33.61 Aligned_cols=50 Identities=18% Similarity=0.195 Sum_probs=27.4
Q ss_pred HhhHHHHHcCccccCccCCCCCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCC
Q psy9004 10 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN 76 (237)
Q Consensus 10 ~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~ 76 (237)
.-+++||+||+++ |-- +.| |.. +.+ +..+++.+.||.||+|+-....+-+
T Consensus 57 rDi~~l~~LgiNt-IRV------------Y~vdp~~-nHd---~CM~~~~~aGIYvi~Dl~~p~~sI~ 107 (314)
T PF03198_consen 57 RDIPLLKELGINT-IRV------------YSVDPSK-NHD---ECMSAFADAGIYVILDLNTPNGSIN 107 (314)
T ss_dssp HHHHHHHHHT-SE-EEE------------S---TTS---H---HHHHHHHHTT-EEEEES-BTTBS--
T ss_pred HhHHHHHHcCCCE-EEE------------EEeCCCC-CHH---HHHHHHHhCCCEEEEecCCCCcccc
Confidence 3568999999998 322 233 333 333 3444566789999999976655543
No 167
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=65.63 E-value=11 Score=33.91 Aligned_cols=35 Identities=23% Similarity=0.248 Sum_probs=29.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCE-EEEEeeccccCCC
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLY-VLLDVVHSHASKN 76 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~-VilD~v~nh~~~~ 76 (237)
.+-.+.++..+.++.+++.|+. |.+|++++..+..
T Consensus 138 ~R~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPgqt 173 (375)
T PRK05628 138 DRTHTPGRAVAAAREARAAGFEHVNLDLIYGTPGES 173 (375)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCcEEEEEeccCCCCC
Confidence 4445788999999999999999 9999999887665
No 168
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=65.04 E-value=5.8 Score=33.16 Aligned_cols=25 Identities=40% Similarity=0.658 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecc
Q psy9004 47 PEQLKYLVDECHKAGLYVLLDVVHS 71 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~VilD~v~n 71 (237)
.+++++++++||+.||+||+...+.
T Consensus 111 ~~~i~~v~~~~~~~gl~vIlE~~l~ 135 (236)
T PF01791_consen 111 IEEIAAVVEECHKYGLKVILEPYLR 135 (236)
T ss_dssp HHHHHHHHHHHHTSEEEEEEEECEC
T ss_pred HHHHHHHHHHHhcCCcEEEEEEecC
Confidence 5889999999999999999996554
No 169
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=64.90 E-value=73 Score=27.38 Aligned_cols=58 Identities=16% Similarity=0.106 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHcCCEEEEEeeccccCCCccccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q psy9004 48 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYL 127 (237)
Q Consensus 48 ~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~~w~ 127 (237)
+..+..|+.++++|+.|.+-+...+..+.. + ... .+++.+.++...
T Consensus 114 ~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~--------~-----------------------~~~---~~~~~~~~~~~~ 159 (274)
T cd07938 114 ERFEPVAELAKAAGLRVRGYVSTAFGCPYE--------G-----------------------EVP---PERVAEVAERLL 159 (274)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEeEecCCCC--------C-----------------------CCC---HHHHHHHHHHHH
Confidence 456667778888888877666555443320 0 011 236677777766
Q ss_pred HhCCCcEEEeccc
Q psy9004 128 EEYQFDGFRFDGV 140 (237)
Q Consensus 128 ~~~giDGfR~D~~ 140 (237)
+ .|+|.+++--.
T Consensus 160 ~-~Ga~~i~l~DT 171 (274)
T cd07938 160 D-LGCDEISLGDT 171 (274)
T ss_pred H-cCCCEEEECCC
Confidence 6 89999988433
No 170
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=64.36 E-value=11 Score=34.37 Aligned_cols=62 Identities=16% Similarity=0.165 Sum_probs=41.7
Q ss_pred CCcCChHHhhHHHHHcCccc-------cCccCCCCCCCCcccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCC
Q psy9004 3 TNGFGTPEQLKYLVDECHKA-------GLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASK 75 (237)
Q Consensus 3 ~~~~Gl~~~L~yl~~lGv~~-------pi~~~~~~~gY~~~d~~~v~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~ 75 (237)
++++.+...|..||.+||.. ++.+......| +....++|.+-+++.|+||.+=+.+.-++.
T Consensus 13 ~~~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~y------------dWs~Y~~l~~~vr~~GLk~~~vmsfH~cGg 80 (402)
T PF01373_consen 13 NDWNALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQY------------DWSGYRELFEMVRDAGLKLQVVMSFHQCGG 80 (402)
T ss_dssp SECHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---------------HHHHHHHHHHHHTT-EEEEEEE-S-BSS
T ss_pred CcHHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCcc------------CcHHHHHHHHHHHHcCCeEEEEEeeecCCC
Confidence 56678899999999999875 22232222222 256778899999999999999888877765
Q ss_pred C
Q psy9004 76 N 76 (237)
Q Consensus 76 ~ 76 (237)
+
T Consensus 81 N 81 (402)
T PF01373_consen 81 N 81 (402)
T ss_dssp S
T ss_pred C
Confidence 4
No 171
>PLN02849 beta-glucosidase
Probab=63.60 E-value=27 Score=32.96 Aligned_cols=51 Identities=20% Similarity=0.180 Sum_probs=34.2
Q ss_pred HHhhHHHHHcCccccCccCCCCCCCCccccccc-CCC-C--C---HHHHHHHHHHHHHcCCEEEEEe
Q psy9004 9 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA-GLF-G--T---PEQLKYLVDECHKAGLYVLLDV 68 (237)
Q Consensus 9 ~~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v-~~~-G--t---~~~l~~lv~~~H~~Gi~VilD~ 68 (237)
.+-++-+++||+++ |.- -..+.+| |.= | + .+=.++||++|+++||+.|+-+
T Consensus 82 ~eDI~Lm~~lG~~a--YRf-------SIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL 139 (503)
T PLN02849 82 KEDVKLMVETGLDA--FRF-------SISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTL 139 (503)
T ss_pred HHHHHHHHHcCCCe--EEE-------eccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEee
Confidence 45678899999987 110 1233344 431 1 1 3457899999999999999864
No 172
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=63.57 E-value=74 Score=27.59 Aligned_cols=59 Identities=12% Similarity=0.057 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHcCCEEEEEeeccccCCCccccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q psy9004 48 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYL 127 (237)
Q Consensus 48 ~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~~w~ 127 (237)
+.++..|+.|+++|++|..-+..-..++.. + -..+ +++.+.++...
T Consensus 120 ~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~--------~-----------------------~~~~---~~~~~~~~~~~ 165 (287)
T PRK05692 120 ERFEPVAEAAKQAGVRVRGYVSCVLGCPYE--------G-----------------------EVPP---EAVADVAERLF 165 (287)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEEecCCCC--------C-----------------------CCCH---HHHHHHHHHHH
Confidence 458899999999999988766653322210 0 0112 46777777777
Q ss_pred HhCCCcEEEe-cccC
Q psy9004 128 EEYQFDGFRF-DGVT 141 (237)
Q Consensus 128 ~~~giDGfR~-D~~~ 141 (237)
+ .|+|.+++ |++.
T Consensus 166 ~-~G~d~i~l~DT~G 179 (287)
T PRK05692 166 A-LGCYEISLGDTIG 179 (287)
T ss_pred H-cCCcEEEeccccC
Confidence 7 79998887 4443
No 173
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=63.45 E-value=11 Score=33.12 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEecc
Q psy9004 111 SEIEVLRFLLSNLRWYLEEYQFDGFRFDG 139 (237)
Q Consensus 111 ~~p~v~~~i~~~~~~w~~~~giDGfR~D~ 139 (237)
.+++.|+.+++.+..+++++|+||+-+|-
T Consensus 105 ~~~~~r~~Fi~siv~~l~~~~fDGidiDw 133 (322)
T cd06548 105 ATEASRAKFADSAVDFIRKYGFDGIDIDW 133 (322)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEECC
Confidence 47889999999999999999999999995
No 174
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=63.25 E-value=14 Score=31.74 Aligned_cols=58 Identities=19% Similarity=0.050 Sum_probs=38.3
Q ss_pred HhhHHHHHcCccccCccCCCCCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccc
Q psy9004 10 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSH 72 (237)
Q Consensus 10 ~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh 72 (237)
+.+..|++.|+.. +.-+-. ..+.-|..+ +. .+.++..+.++.+|+.||+|...+++.+
T Consensus 124 e~l~~Lk~aG~~~-v~i~~E---~~~~~~~~i~~~-~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl 182 (296)
T TIGR00433 124 EQAKRLKDAGLDY-YNHNLD---TSQEFYSNIIST-HTYDDRVDTLENAKKAGLKVCSGGIFGL 182 (296)
T ss_pred HHHHHHHHcCCCE-EEEccc---CCHHHHhhccCC-CCHHHHHHHHHHHHHcCCEEEEeEEEeC
Confidence 4556666777655 222111 122233345 43 4788999999999999999999988876
No 175
>KOG0259|consensus
Probab=63.10 E-value=7.5 Score=35.18 Aligned_cols=31 Identities=26% Similarity=0.430 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccCCC
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSHASKN 76 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~ 76 (237)
|.+-|+++++-||++||-||.|-|+.|+.-.
T Consensus 217 s~~HL~kiae~A~klgi~vIaDEVY~~~vfg 247 (447)
T KOG0259|consen 217 SEDHLKKIAETAKKLGIMVIADEVYGHTVFG 247 (447)
T ss_pred cHHHHHHHHHHHHHhCCeEEehhhcceeecC
Confidence 4688999999999999999999999999765
No 176
>PRK06256 biotin synthase; Validated
Probab=62.41 E-value=11 Score=33.29 Aligned_cols=58 Identities=14% Similarity=-0.063 Sum_probs=39.1
Q ss_pred HhhHHHHHcCccccCccCCCCCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccc
Q psy9004 10 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSH 72 (237)
Q Consensus 10 ~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh 72 (237)
+.+..|++.|+.. +..+... ++.-|-.+ +. .+.++..+.++.||+.||+|...+++.+
T Consensus 153 e~l~~LkeaG~~~-v~~~lEt---s~~~~~~i~~~-~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl 211 (336)
T PRK06256 153 EQAERLKEAGVDR-YNHNLET---SRSYFPNVVTT-HTYEDRIDTCEMVKAAGIEPCSGGIIGM 211 (336)
T ss_pred HHHHHHHHhCCCE-EecCCcc---CHHHHhhcCCC-CCHHHHHHHHHHHHHcCCeeccCeEEeC
Confidence 4566777777665 2222111 22223345 43 4789999999999999999999999986
No 177
>PRK07094 biotin synthase; Provisional
Probab=61.83 E-value=13 Score=32.49 Aligned_cols=63 Identities=10% Similarity=-0.105 Sum_probs=41.1
Q ss_pred HhhHHHHHcCccccCccCCCCCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCC
Q psy9004 10 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN 76 (237)
Q Consensus 10 ~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~ 76 (237)
+.+..|++.|++. +..+. -..++.-+..+ + -.+.++..+.++.+|+.||.|..++++++.+..
T Consensus 130 e~l~~Lk~aG~~~-v~~gl--Es~~~~~~~~i~~-~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget 193 (323)
T PRK07094 130 EEYKAWKEAGADR-YLLRH--ETADKELYAKLHP-GMSFENRIACLKDLKELGYEVGSGFMVGLPGQT 193 (323)
T ss_pred HHHHHHHHcCCCE-EEecc--ccCCHHHHHHhCC-CCCHHHHHHHHHHHHHcCCeecceEEEECCCCC
Confidence 4556666666554 22111 01122333345 4 367899999999999999999999999876654
No 178
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=61.17 E-value=15 Score=32.84 Aligned_cols=64 Identities=16% Similarity=0.095 Sum_probs=41.6
Q ss_pred HhhHHHHHcCccccCccCCCCCCCCcccccccCCCCCHHHHHHHHHHHHHcCCE-EEEEeeccccCCC
Q psy9004 10 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLY-VLLDVVHSHASKN 76 (237)
Q Consensus 10 ~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v~~~Gt~~~l~~lv~~~H~~Gi~-VilD~v~nh~~~~ 76 (237)
++|..|+++|++. +.-+..+ .++.-+..+.+-.+.++..+.++.+++.|+. |-+|+.++..+..
T Consensus 101 e~l~~l~~~Gv~r-isiGvqS--~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt 165 (360)
T TIGR00539 101 EWCKGLKGAGINR-LSLGVQS--FRDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQT 165 (360)
T ss_pred HHHHHHHHcCCCE-EEEeccc--CChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCC
Confidence 5667777777665 3222211 1111111224556789999999999999996 7899999877665
No 179
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=60.91 E-value=14 Score=32.96 Aligned_cols=64 Identities=14% Similarity=0.077 Sum_probs=41.7
Q ss_pred HhhHHHHHcCccccCccCCCCCCCCcccccccCCCCCHHHHHHHHHHHHHcCCE-EEEEeeccccCCC
Q psy9004 10 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLY-VLLDVVHSHASKN 76 (237)
Q Consensus 10 ~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v~~~Gt~~~l~~lv~~~H~~Gi~-VilD~v~nh~~~~ 76 (237)
++|..+++.|++. +.-+..+ .+..-...+.+-.+.++..+.++.|++.|+. |-+|+.++..+..
T Consensus 104 e~l~~lk~~G~nr-isiGvQS--~~d~vL~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPgqt 168 (353)
T PRK05904 104 SQINLLKKNKVNR-ISLGVQS--MNNNILKQLNRTHTIQDSKEAINLLHKNGIYNISCDFLYCLPILK 168 (353)
T ss_pred HHHHHHHHcCCCE-EEEeccc--CCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeecCCCCC
Confidence 5667777777665 3222111 1111111224445789999999999999998 9999999887654
No 180
>PLN02814 beta-glucosidase
Probab=60.75 E-value=31 Score=32.49 Aligned_cols=51 Identities=16% Similarity=0.122 Sum_probs=33.8
Q ss_pred HHhhHHHHHcCccccCccCCCCCCCCccccccc-CC-CC-----CHHHHHHHHHHHHHcCCEEEEEe
Q psy9004 9 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA-GL-FG-----TPEQLKYLVDECHKAGLYVLLDV 68 (237)
Q Consensus 9 ~~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v-~~-~G-----t~~~l~~lv~~~H~~Gi~VilD~ 68 (237)
.+-++-+++||+++ |.- -..+.+| |. -| +.+=.++||++|.++||+.|+=+
T Consensus 80 ~EDI~L~k~lG~~a--yRf-------SIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL 137 (504)
T PLN02814 80 KEDVKLMAEMGLES--FRF-------SISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTL 137 (504)
T ss_pred HHHHHHHHHcCCCE--EEE-------eccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEe
Confidence 46678899999987 110 1223334 32 11 24557899999999999999764
No 181
>cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=60.22 E-value=12 Score=31.31 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecc
Q psy9004 47 PEQLKYLVDECHKAGLYVLLDVVHS 71 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~VilD~v~n 71 (237)
.+.++++|++||++|++|.+.-+.+
T Consensus 184 ~~~l~~~v~~a~~~Gl~vr~Wtv~~ 208 (228)
T cd08577 184 KEKLKSIIDKAHARGKKVRFWGTPD 208 (228)
T ss_pred HHHHHHHHHHHHHCCCEEEEEccCC
Confidence 4679999999999999999998776
No 182
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=59.08 E-value=41 Score=31.45 Aligned_cols=89 Identities=16% Similarity=0.189 Sum_probs=53.2
Q ss_pred hHHhhHHHHHcCccccCccCCCCCCCCccccccc-CC--CC--C---HHHHHHHHHHHHHcCCEEEEEeeccccCCCccc
Q psy9004 8 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA-GL--FG--T---PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLD 79 (237)
Q Consensus 8 l~~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v-~~--~G--t---~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~ 79 (237)
..+-++-+++||+++ |.- -..+.+| |. -| + .+=.++||++|.++||+.|+=+ .|-.-
T Consensus 69 y~eDi~Lm~~lG~~~--yRf-------SIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL--~H~dl---- 133 (476)
T PRK09589 69 YKEDIALFAEMGFKC--FRT-------SIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTL--SHFEM---- 133 (476)
T ss_pred hHHHHHHHHHcCCCE--EEe-------ccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--cCCCC----
Confidence 346678899999987 111 1334455 54 11 2 3447899999999999999864 34322
Q ss_pred cccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCC
Q psy9004 80 GLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQ 131 (237)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~~w~~~~g 131 (237)
|.|+.... --+.|+++.+.+.+.++...++||
T Consensus 134 ---------P~~L~~~y-----------GGW~n~~~i~~F~~YA~~~f~~fg 165 (476)
T PRK09589 134 ---------PYHLVTEY-----------GGWRNRKLIDFFVRFAEVVFTRYK 165 (476)
T ss_pred ---------CHHHHHhc-----------CCcCChHHHHHHHHHHHHHHHHhc
Confidence 22221110 113456777777777666666554
No 183
>PLN02998 beta-glucosidase
Probab=58.93 E-value=30 Score=32.59 Aligned_cols=51 Identities=18% Similarity=0.173 Sum_probs=34.1
Q ss_pred HHhhHHHHHcCccccCccCCCCCCCCccccccc-CC-CC-----CHHHHHHHHHHHHHcCCEEEEEe
Q psy9004 9 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA-GL-FG-----TPEQLKYLVDECHKAGLYVLLDV 68 (237)
Q Consensus 9 ~~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v-~~-~G-----t~~~l~~lv~~~H~~Gi~VilD~ 68 (237)
.+-++-+++||+++ |.- -.++.+| |. -| ..+=.++||++|.++||+.|+-+
T Consensus 85 ~EDi~lmk~lG~~~--YRf-------SIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL 142 (497)
T PLN02998 85 KEDVKLMADMGLEA--YRF-------SISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTL 142 (497)
T ss_pred HHHHHHHHHcCCCe--EEe-------eccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEe
Confidence 46678899999987 110 1223344 43 11 24557899999999999999764
No 184
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=58.78 E-value=23 Score=29.96 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEee
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVV 69 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v 69 (237)
+.++..++|+.+++.|++|+-.+=
T Consensus 98 ~~~~~~rlI~~~~~~g~~v~~EvG 121 (237)
T TIGR03849 98 SLEERCNLIERAKDNGFMVLSEVG 121 (237)
T ss_pred CHHHHHHHHHHHHhCCCeEecccc
Confidence 378999999999999999996643
No 185
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=58.76 E-value=7.4 Score=33.51 Aligned_cols=26 Identities=38% Similarity=0.631 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEee
Q psy9004 44 FGTPEQLKYLVDECHKAGLYVLLDVV 69 (237)
Q Consensus 44 ~Gt~~~l~~lv~~~H~~Gi~VilD~v 69 (237)
.|...+++++++.||++|+.|++|-+
T Consensus 166 ~G~~~dl~~I~~~~~~~g~~livDeA 191 (294)
T cd00615 166 YGICYNLRKIVEEAHHRGLPVLVDEA 191 (294)
T ss_pred CCEecCHHHHHHHHHhcCCeEEEECc
Confidence 47778899999999999999999977
No 186
>PRK05967 cystathionine beta-lyase; Provisional
Probab=58.72 E-value=14 Score=33.62 Aligned_cols=31 Identities=13% Similarity=0.220 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeeccc
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVHSH 72 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh 72 (237)
...++..+++++++.||++|+.||+|-++..
T Consensus 160 NP~l~v~dl~~I~~la~~~g~~vvVD~t~a~ 190 (395)
T PRK05967 160 SNTFEMQDIPAIAEAAHRHGAIVMMDNTWAT 190 (395)
T ss_pred CCCCcHHHHHHHHHHHHHhCCEEEEECCccC
Confidence 3457899999999999999999999988753
No 187
>PLN02899 alpha-galactosidase
Probab=58.21 E-value=1.3e+02 Score=29.22 Aligned_cols=93 Identities=17% Similarity=0.135 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccc--cCCC--ccc-c---ccCCCCCCCCccCCC--CCCCCCCCCC---CCCCCCCH
Q psy9004 47 PEQLKYLVDECHKAGLYVLLDVVHSH--ASKN--VLD-G---LNEFDGTQACFFHDG--PRGTHPLWDS---RLFNYSEI 113 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~VilD~v~nh--~~~~--~~~-~---~~~~~~~~~~~~~~~--~~~~~~~~~~---~~ln~~~p 113 (237)
..-|+.|.+.+|++|+|.=+=....- ++.. .+- . -..+.+....|.... .......|.. ...|.+.+
T Consensus 112 g~GmK~LADYVHskGLKFGIY~~~Gi~tcA~~~~~PI~gs~~g~~y~~s~~~~~a~DIa~~~~tC~w~~~g~~~vDa~~~ 191 (633)
T PLN02899 112 GKGFTEVAEKVHAMGLKFGIHVMRGISTQAVNANTPILDAVKGGAYEESGRQWRAKDIALKERACAWMSHGFMSVNTKLG 191 (633)
T ss_pred CCCcHHHHHHHHhCCcceEEEecCCCcccccccCCccccccccccccccccccchhhccccccccccCCCCccccccccc
Confidence 35699999999999999644333332 1110 000 0 001111111111111 0011122332 24667778
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEeccc
Q psy9004 114 EVLRFLLSNLRWYLEEYQFDGFRFDGV 140 (237)
Q Consensus 114 ~v~~~i~~~~~~w~~~~giDGfR~D~~ 140 (237)
.-++++...++.+.+ .|||=+.+|..
T Consensus 192 ~g~a~~~Sla~tfAs-WGVDyLKyD~c 217 (633)
T PLN02899 192 AGKAFLRSLYDQYAE-WGVDFVKHDCV 217 (633)
T ss_pred chhhhhHHHHHHHHH-hCCCEEEEcCC
Confidence 888999888888887 99999999975
No 188
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=58.06 E-value=20 Score=33.69 Aligned_cols=65 Identities=14% Similarity=0.170 Sum_probs=43.2
Q ss_pred HHhhHHHHHcCccccCccCCCCCCCCcccccccCCCCCHHHHHHHHHHHHHcCC-EEEEEeeccccCCC
Q psy9004 9 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL-YVLLDVVHSHASKN 76 (237)
Q Consensus 9 ~~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v~~~Gt~~~l~~lv~~~H~~Gi-~VilD~v~nh~~~~ 76 (237)
.++|..|++.|++. +.-++.+.- ..-+..+.+-.|.++..+.++.|++.|+ .|-+|+.++-.+..
T Consensus 269 ~e~L~~Lk~~Gv~R-ISIGvQS~~--d~vLk~igR~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPgEt 334 (488)
T PRK08207 269 EEKLEVLKKYGVDR-ISINPQTMN--DETLKAIGRHHTVEDIIEKFHLAREMGFDNINMDLIIGLPGEG 334 (488)
T ss_pred HHHHHHHHhcCCCe-EEEcCCcCC--HHHHHHhCCCCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCCCC
Confidence 35677777777765 333332111 1111222444678999999999999999 78899998876654
No 189
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=57.94 E-value=17 Score=30.20 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHcCCEEEEEeec
Q psy9004 48 EQLKYLVDECHKAGLYVLLDVVH 70 (237)
Q Consensus 48 ~~l~~lv~~~H~~Gi~VilD~v~ 70 (237)
++++++++.||+.|+++|++...
T Consensus 109 ~~i~~v~~~~~~~g~~~iie~~~ 131 (235)
T cd00958 109 EELARVAAEAHKYGLPLIAWMYP 131 (235)
T ss_pred HHHHHHHHHHHHcCCCEEEEEec
Confidence 48999999999999999997644
No 190
>PRK12569 hypothetical protein; Provisional
Probab=57.92 E-value=1e+02 Score=26.29 Aligned_cols=106 Identities=20% Similarity=0.144 Sum_probs=65.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCCccccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLS 121 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~ 121 (237)
-+.|+++.+++-|+.|+++|++|= .+|.|= ....++-..++.+..++++.+..
T Consensus 41 ~HAGDp~~M~~tv~lA~~~~V~IG---------------------AHPsyP------D~~gFGRr~m~~s~~el~~~v~y 93 (245)
T PRK12569 41 FHAGDPNIMRRTVELAKAHGVGIG---------------------AHPGFR------DLVGFGRRHINASPQELVNDVLY 93 (245)
T ss_pred ccCCCHHHHHHHHHHHHHcCCEec---------------------cCCCCC------cCCCCCCCCCCCCHHHHHHHHHH
Confidence 567899999999999999999872 122221 12234556788888999988876
Q ss_pred HHHHHHHhCCCcEEEecccCc--cccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhhCCCeEEEEe
Q psy9004 122 NLRWYLEEYQFDGFRFDGVTS--MLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAE 193 (237)
Q Consensus 122 ~~~~w~~~~giDGfR~D~~~~--l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~i~E 193 (237)
-+-.+..-...-|-++..+|- ..|++- +.+ .++-+.+.+++++..|+..+++=
T Consensus 94 QigaL~~~~~~~g~~l~hVKPHGALYN~~----------------~~d---~~la~av~~ai~~~~~~l~l~~~ 148 (245)
T PRK12569 94 QLGALREFARAHGVRLQHVKPHGALYMHA----------------ARD---EALARLLVEALARLDPLLILYCM 148 (245)
T ss_pred HHHHHHHHHHHcCCeeEEecCCHHHHHHH----------------hcC---HHHHHHHHHHHHHhCCCcEEEec
Confidence 654444333445556655541 111100 011 34556667777888888777763
No 191
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=57.68 E-value=16 Score=32.29 Aligned_cols=60 Identities=22% Similarity=0.235 Sum_probs=43.0
Q ss_pred hHHhhHHHHHcCccc--cCccCCCCCCCCccccccc--CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCC
Q psy9004 8 TPEQLKYLVDECHKA--GLFGTPEQLKYLVDECHKA--GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN 76 (237)
Q Consensus 8 l~~~L~yl~~lGv~~--pi~~~~~~~gY~~~d~~~v--~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~ 76 (237)
-+++|.-+.++|+.. +.|.-.+.+|..+..-... +++| |++|++|++.|| |+| +-|++..
T Consensus 110 dl~~L~~~~~~GvR~lgltwn~~N~~g~g~~~~~~~GLs~~G-----k~lV~~~N~LgI--iiD--lSH~s~k 173 (313)
T COG2355 110 DLDKLELFHALGVRSLGLTWNRDNLFGDGCYERTGGGLTPFG-----KELVREMNELGI--IID--LSHLSDK 173 (313)
T ss_pred cHHHHHHHHHhCceEEEeeeccCCcccCccCCCCCCCCCHHH-----HHHHHHHHhcCC--EEE--ecccCCc
Confidence 377899999999764 6676666666655443332 5555 899999999886 666 4688876
No 192
>PRK05939 hypothetical protein; Provisional
Probab=57.35 E-value=15 Score=33.30 Aligned_cols=29 Identities=17% Similarity=0.162 Sum_probs=25.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVH 70 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~ 70 (237)
...|...+++++++.||++|+.||+|-+.
T Consensus 142 NptG~v~dl~~I~~la~~~gi~livD~t~ 170 (397)
T PRK05939 142 NPGTQVADLAGIGALCRERGLLYVVDNTM 170 (397)
T ss_pred CCCCCHHhHHHHHHHHHHcCCEEEEECCc
Confidence 45677899999999999999999999764
No 193
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=57.34 E-value=81 Score=26.29 Aligned_cols=19 Identities=16% Similarity=0.156 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhCCCcEEEe
Q psy9004 118 FLLSNLRWYLEEYQFDGFRF 137 (237)
Q Consensus 118 ~i~~~~~~w~~~~giDGfR~ 137 (237)
++.+.++...+ +|+|.+++
T Consensus 147 ~l~~~~~~~~~-~g~~~i~l 165 (265)
T cd03174 147 YVLEVAKALEE-AGADEISL 165 (265)
T ss_pred HHHHHHHHHHH-cCCCEEEe
Confidence 46667776666 89999998
No 194
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=57.31 E-value=43 Score=28.53 Aligned_cols=59 Identities=15% Similarity=0.093 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhhCCCeEEEEe
Q psy9004 114 EVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAE 193 (237)
Q Consensus 114 ~v~~~i~~~~~~w~~~~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~i~E 193 (237)
..++.+++.+..+++++|+||+-+|-=... .....-..++++++.++++.. .++++-
T Consensus 96 ~~~~~fv~S~~~~l~~~~fDGiDiDwE~~~---------------------~d~~~f~~ll~~l~~~l~~~~--~lt~a~ 152 (253)
T cd06544 96 SWVSNAVSSLTSIIQTYNLDGIDIDYEHFP---------------------ADPDTFVECIGQLITELKNNG--VIKVAS 152 (253)
T ss_pred hHHHHHHHHHHHHHHHhCCCceeeecccCC---------------------cCHHHHHHHHHHHHHHhhhcC--CeEEEE
Confidence 334555677777888899999999854210 001234578888998887753 555554
Q ss_pred cC
Q psy9004 194 DV 195 (237)
Q Consensus 194 ~~ 195 (237)
..
T Consensus 153 va 154 (253)
T cd06544 153 IA 154 (253)
T ss_pred ec
Confidence 33
No 195
>PLN02801 beta-amylase
Probab=56.51 E-value=26 Score=32.89 Aligned_cols=59 Identities=19% Similarity=0.210 Sum_probs=42.8
Q ss_pred CChHHhhHHHHHcCccc-------cCccCCCCCCCCcccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCC
Q psy9004 6 FGTPEQLKYLVDECHKA-------GLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN 76 (237)
Q Consensus 6 ~Gl~~~L~yl~~lGv~~-------pi~~~~~~~gY~~~d~~~v~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~ 76 (237)
++|...|..||.+||.. +|.+..+...| .....++|++-+++.|+||.+=+.+.-++.+
T Consensus 37 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~Y------------dWsgY~~l~~mvr~~GLKlq~vmSFHqCGGN 102 (517)
T PLN02801 37 EGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQY------------DWSAYRSLFELVQSFGLKIQAIMSFHQCGGN 102 (517)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcc------------CcHHHHHHHHHHHHcCCeEEEEEEecccCCC
Confidence 36889999999999875 23332222223 2566788888899999999988888877665
No 196
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=55.86 E-value=16 Score=31.24 Aligned_cols=22 Identities=50% Similarity=0.744 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHcCCEEEEEe
Q psy9004 47 PEQLKYLVDECHKAGLYVLLDV 68 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~VilD~ 68 (237)
.+++++|++.||++||.|++.+
T Consensus 142 ~~~l~el~~~A~~LGm~~LVEV 163 (254)
T COG0134 142 DEQLEELVDRAHELGMEVLVEV 163 (254)
T ss_pred HHHHHHHHHHHHHcCCeeEEEE
Confidence 5779999999999999999985
No 197
>PTZ00445 p36-lilke protein; Provisional
Probab=55.72 E-value=20 Score=29.88 Aligned_cols=55 Identities=15% Similarity=0.040 Sum_probs=34.2
Q ss_pred hhHHHHHcCccccCcc------CCCCCCCCccc--ccccCCCCCHHHHHHHHHHHHHcCCEEEE
Q psy9004 11 QLKYLVDECHKAGLFG------TPEQLKYLVDE--CHKAGLFGTPEQLKYLVDECHKAGLYVLL 66 (237)
Q Consensus 11 ~L~yl~~lGv~~pi~~------~~~~~gY~~~d--~~~v~~~Gt~~~l~~lv~~~H~~Gi~Vil 66 (237)
-++.|++.||.+-++. +..+.||+-.+ -..+-..+|+ +|+.++.++++.||+|++
T Consensus 34 ~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tp-efk~~~~~l~~~~I~v~V 96 (219)
T PTZ00445 34 FVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTP-DFKILGKRLKNSNIKISV 96 (219)
T ss_pred HHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCH-HHHHHHHHHHHCCCeEEE
Confidence 3467899998762221 11345665443 1111222344 599999999999999975
No 198
>PRK09028 cystathionine beta-lyase; Provisional
Probab=54.94 E-value=18 Score=32.97 Aligned_cols=30 Identities=17% Similarity=0.215 Sum_probs=25.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVHS 71 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~n 71 (237)
...|...+++++++.||++|+.||+|-+.-
T Consensus 157 NPtg~v~dl~~I~~la~~~g~~lvvD~t~a 186 (394)
T PRK09028 157 SITMEVQDVPTLSRIAHEHDIVVMLDNTWA 186 (394)
T ss_pred CCCCcHHHHHHHHHHHHHcCCEEEEECCcc
Confidence 334678999999999999999999997764
No 199
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=54.60 E-value=18 Score=32.58 Aligned_cols=30 Identities=7% Similarity=0.236 Sum_probs=26.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVHS 71 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~n 71 (237)
...|...+++++++.||++|+.||+|-+.-
T Consensus 146 Np~g~~~dl~~I~~la~~~g~~livD~t~a 175 (377)
T TIGR01324 146 SITFEIQDIPAIAKAARNPGIVIMIDNTWA 175 (377)
T ss_pred CCCCcHHHHHHHHHHHHHcCCEEEEECCCc
Confidence 455788999999999999999999997753
No 200
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=54.50 E-value=17 Score=24.48 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=26.5
Q ss_pred Cccccccc-CCCCCHHHHHHHHHHHHHcCCEEEE
Q psy9004 34 LVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLL 66 (237)
Q Consensus 34 ~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~Vil 66 (237)
...|..-+ ..-|...+..++++.|+++|.++|.
T Consensus 46 ~~~d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~ 79 (87)
T cd04795 46 RKGDVVIALSYSGRTEELLAALEIAKELGIPVIA 79 (87)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHcCCeEEE
Confidence 34555556 7778888899999999999999874
No 201
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=54.20 E-value=17 Score=30.97 Aligned_cols=23 Identities=52% Similarity=0.673 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEe
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDV 68 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~ 68 (237)
+.+++++|++.||+.||.+|+|+
T Consensus 145 ~~~~l~~li~~a~~lGl~~lvev 167 (260)
T PRK00278 145 DDEQLKELLDYAHSLGLDVLVEV 167 (260)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEe
Confidence 46899999999999999999995
No 202
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=53.47 E-value=15 Score=31.51 Aligned_cols=27 Identities=22% Similarity=0.393 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccc
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSH 72 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh 72 (237)
+.++++++++.||++|+.||+|-+...
T Consensus 150 ~~~~l~~l~~~~~~~~~~~ivD~a~~~ 176 (350)
T cd00609 150 SEEELEELAELAKKHGILIISDEAYAE 176 (350)
T ss_pred CHHHHHHHHHHHHhCCeEEEEecchhh
Confidence 367899999999999999999988643
No 203
>PF15640 Tox-MPTase4: Metallopeptidase toxin 4
Probab=53.46 E-value=15 Score=27.81 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=23.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEE
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLD 67 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD 67 (237)
.++-+..|++.+-+...++||+|++|
T Consensus 16 ~ri~s~~d~k~~kk~m~~~gIkV~Id 41 (132)
T PF15640_consen 16 QRIMSVKDIKNFKKEMGKRGIKVKID 41 (132)
T ss_pred cEeeeHHHHHHHHHHHHhCCcEEEEC
Confidence 56677899999999999999999998
No 204
>PRK05660 HemN family oxidoreductase; Provisional
Probab=53.34 E-value=25 Score=31.70 Aligned_cols=64 Identities=13% Similarity=0.161 Sum_probs=42.7
Q ss_pred HhhHHHHHcCccccCccCCCCCCCCcccccccCCCCCHHHHHHHHHHHHHcCCEE-EEEeeccccCCC
Q psy9004 10 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYV-LLDVVHSHASKN 76 (237)
Q Consensus 10 ~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v~~~Gt~~~l~~lv~~~H~~Gi~V-ilD~v~nh~~~~ 76 (237)
++|..|+++|++. +.-+.. ..++.-+..+.+..+.++..+-++.|++.|++. -+|+.++..+..
T Consensus 108 e~l~~Lk~~Gv~r-isiGvq--S~~~~~L~~l~r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt 172 (378)
T PRK05660 108 DRFVGYQRAGVNR-ISIGVQ--SFSEEKLKRLGRIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQS 172 (378)
T ss_pred HHHHHHHHcCCCE-EEeccC--cCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 5677777777765 333221 112222223345567899999999999999985 599998877765
No 205
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=52.88 E-value=19 Score=26.46 Aligned_cols=33 Identities=12% Similarity=0.106 Sum_probs=27.1
Q ss_pred Cccccccc-CCCCCHHHHHHHHHHHHHcCCEEEE
Q psy9004 34 LVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLL 66 (237)
Q Consensus 34 ~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~Vil 66 (237)
.+.|..-+ ..-|...++.++++.|+++|+++++
T Consensus 59 ~~~~~~i~iS~~g~~~~~~~~~~~a~~~g~~iv~ 92 (139)
T cd05013 59 TPGDVVIAISFSGETKETVEAAEIAKERGAKVIA 92 (139)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEE
Confidence 34555566 8889999999999999999999854
No 206
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=52.27 E-value=29 Score=30.86 Aligned_cols=65 Identities=15% Similarity=0.160 Sum_probs=41.7
Q ss_pred HHhhHHHHHcCccccCccCCCCCCCCcccccccCCCCCHHHHHHHHHHHHHcCCE-EEEEeeccccCCC
Q psy9004 9 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLY-VLLDVVHSHASKN 76 (237)
Q Consensus 9 ~~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v~~~Gt~~~l~~lv~~~H~~Gi~-VilD~v~nh~~~~ 76 (237)
.++|..++++|++- +.-+..+ .+..-...+.+-.+.++..+.++.+++.|+. |-+|+.++..+..
T Consensus 98 ~e~l~~l~~~GvnR-iSiGvQS--~~~~~L~~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPgqt 163 (350)
T PRK08446 98 KAWLKGMKNLGVNR-ISFGVQS--FNEDKLKFLGRIHSQKQIIKAIENAKKAGFENISIDLIYDTPLDN 163 (350)
T ss_pred HHHHHHHHHcCCCE-EEEeccc--CCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCC
Confidence 36777777777765 3222211 1111111124445788999999999999997 6699999877654
No 207
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=52.26 E-value=31 Score=28.48 Aligned_cols=42 Identities=21% Similarity=0.356 Sum_probs=27.7
Q ss_pred HHhhHHHHHcCccc-cCccCCCCCCCCcccccccCCCCCHHHHHHHHHHHHHcCCEE
Q psy9004 9 PEQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYV 64 (237)
Q Consensus 9 ~~~L~yl~~lGv~~-pi~~~~~~~gY~~~d~~~v~~~Gt~~~l~~lv~~~H~~Gi~V 64 (237)
...+..|++||..+ -+||. .-+-..+||+.+.++|-++||.+
T Consensus 138 etAiaml~dmG~~SiKffPm--------------~Gl~~leE~~avAkA~a~~g~~l 180 (218)
T PF07071_consen 138 ETAIAMLKDMGGSSIKFFPM--------------GGLKHLEELKAVAKACARNGFTL 180 (218)
T ss_dssp HHHHHHHHHTT--EEEE-----------------TTTTTHHHHHHHHHHHHHCT-EE
T ss_pred HHHHHHHHHcCCCeeeEeec--------------CCcccHHHHHHHHHHHHHcCcee
Confidence 44677888999876 11221 33346899999999999999987
No 208
>PLN02803 beta-amylase
Probab=52.25 E-value=34 Score=32.32 Aligned_cols=59 Identities=22% Similarity=0.207 Sum_probs=42.7
Q ss_pred CChHHhhHHHHHcCccc-------cCccCCCCCCCCcccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCC
Q psy9004 6 FGTPEQLKYLVDECHKA-------GLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN 76 (237)
Q Consensus 6 ~Gl~~~L~yl~~lGv~~-------pi~~~~~~~gY~~~d~~~v~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~ 76 (237)
++|...|..||.+||.. +|.+..+...| ...-.++|++-+++.|+||.+=+.+.-++.+
T Consensus 107 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~Y------------dWsgY~~l~~mvr~~GLKlq~vmSFHqCGGN 172 (548)
T PLN02803 107 RAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKY------------NWEGYAELVQMVQKHGLKLQVVMSFHQCGGN 172 (548)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcC------------CcHHHHHHHHHHHHcCCeEEEEEEecccCCC
Confidence 47888999999999875 23332222223 2556688888888999999988888877665
No 209
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=51.72 E-value=19 Score=31.97 Aligned_cols=29 Identities=21% Similarity=0.344 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEeccc
Q psy9004 112 EIEVLRFLLSNLRWYLEEYQFDGFRFDGV 140 (237)
Q Consensus 112 ~p~v~~~i~~~~~~w~~~~giDGfR~D~~ 140 (237)
+++.|+.+++.+..+++++|+||+-||-=
T Consensus 88 ~~~~R~~Fi~si~~~~~~~~fDGidiDwE 116 (345)
T cd02878 88 KPANRDTFANNVVNFVNKYNLDGVDFDWE 116 (345)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCceeeccc
Confidence 68899999999988999899999999965
No 210
>PRK05968 hypothetical protein; Provisional
Probab=51.63 E-value=21 Score=32.18 Aligned_cols=29 Identities=10% Similarity=0.135 Sum_probs=25.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVH 70 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~ 70 (237)
...+...+++++.+.||++|+.||+|-..
T Consensus 158 ~~~~~~~dl~~i~~la~~~gi~vivD~a~ 186 (389)
T PRK05968 158 SWVFELQDVAALAALAKRHGVVTMIDNSW 186 (389)
T ss_pred CCCCcHHHHHHHHHHHHHcCCEEEEECCC
Confidence 55677899999999999999999999754
No 211
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=51.62 E-value=1.6e+02 Score=25.54 Aligned_cols=97 Identities=15% Similarity=0.183 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccCCCccccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRW 125 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~~ 125 (237)
+.+++.+.++.+++.||+|.+++.++--+.. .+.+.+.+++
T Consensus 161 t~~~~~~ai~~l~~~gi~v~~~lI~GlPget---------------------------------------~e~~~~t~~~ 201 (302)
T TIGR01212 161 DFACYVDAVKRARKRGIKVCSHVILGLPGED---------------------------------------REEMMETAKI 201 (302)
T ss_pred hHHHHHHHHHHHHHcCCEEEEeEEECCCCCC---------------------------------------HHHHHHHHHH
Confidence 5788999999999999999999888744332 1345556665
Q ss_pred HHHhCCCcEEEecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhhCCCeEE
Q psy9004 126 YLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIIT 190 (237)
Q Consensus 126 w~~~~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~ 190 (237)
..+ +++|++.+-...-+ ..+ .+.+ .+. -|.-......++++++...++...|+..+
T Consensus 202 l~~-l~~d~i~i~~l~~~-pgT-~L~~----~~~--~g~~~~~~~~e~~~~~~~~l~~l~~~~~i 257 (302)
T TIGR01212 202 VSL-LDVDGIKIHPLHVV-KGT-KMAK----MYE--KGELKTLSLEEYISLACDFLEHLPPEVVI 257 (302)
T ss_pred HHh-cCCCEEEEEEEEec-CCC-HHHH----HHH--cCCCCCCCHHHHHHHHHHHHHhCCcCeEE
Confidence 444 89999998433211 100 0000 000 01112233457888888888888776653
No 212
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=51.61 E-value=1.3e+02 Score=28.16 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEe-cccC
Q psy9004 115 VLRFLLSNLRWYLEEYQFDGFRF-DGVT 141 (237)
Q Consensus 115 v~~~i~~~~~~w~~~~giDGfR~-D~~~ 141 (237)
..+++.+.++...+ .|+|.+++ |++.
T Consensus 161 t~~y~~~~a~~l~~-~Gad~I~IkDtaG 187 (468)
T PRK12581 161 TLNYYLSLVKELVE-MGADSICIKDMAG 187 (468)
T ss_pred cHHHHHHHHHHHHH-cCCCEEEECCCCC
Confidence 34577777777776 89999988 4443
No 213
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=51.56 E-value=25 Score=32.29 Aligned_cols=64 Identities=16% Similarity=0.152 Sum_probs=39.3
Q ss_pred HhhHHHHHcCccccCccCCCCCCCCcccccccCCCCCHHHHHHHHHHHHHcCCEEE-EEeeccccCCC
Q psy9004 10 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVL-LDVVHSHASKN 76 (237)
Q Consensus 10 ~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v~~~Gt~~~l~~lv~~~H~~Gi~Vi-lD~v~nh~~~~ 76 (237)
++|..++++|++. +.-+..+ .+......+.+--+.++..+.++.|++.|+.+| +|+.++..+..
T Consensus 142 e~l~~l~~~G~~r-vslGvQS--~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt 206 (430)
T PRK08208 142 EKLALLAARGVNR-LSIGVQS--FHDSELHALHRPQKRADVHQALEWIRAAGFPILNIDLIYGIPGQT 206 (430)
T ss_pred HHHHHHHHcCCCE-EEEeccc--CCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 4566666666654 2221110 111111222222368899999999999999865 99998877765
No 214
>PRK02227 hypothetical protein; Provisional
Probab=50.92 E-value=24 Score=29.84 Aligned_cols=49 Identities=18% Similarity=0.146 Sum_probs=29.8
Q ss_pred hHHHHHcCccccCccCCCCCCCCcccccccCCCCCHHHHHHHHHHHHHcCCEEEE
Q psy9004 12 LKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLL 66 (237)
Q Consensus 12 L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v~~~Gt~~~l~~lv~~~H~~Gi~Vil 66 (237)
++.+++.|+..-.+.+-...|-...|+. +.++|++||++||++|+..=|
T Consensus 137 ~~~a~~aGf~g~MlDTa~Kdg~~Lfd~l------~~~~L~~Fv~~ar~~Gl~~gL 185 (238)
T PRK02227 137 PAIAADAGFDGAMLDTAIKDGKSLFDHM------DEEELAEFVAEARSHGLMSAL 185 (238)
T ss_pred HHHHHHcCCCEEEEecccCCCcchHhhC------CHHHHHHHHHHHHHcccHhHh
Confidence 3445555554323333333343333333 689999999999999997643
No 215
>PTZ00413 lipoate synthase; Provisional
Probab=50.86 E-value=34 Score=31.10 Aligned_cols=66 Identities=15% Similarity=0.193 Sum_probs=45.4
Q ss_pred CCCcCChHHhhHHHHHcCccc---cCccCCCCCCCCcccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeecccc
Q psy9004 2 RTNGFGTPEQLKYLVDECHKA---GLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHA 73 (237)
Q Consensus 2 ~~~~~Gl~~~L~yl~~lGv~~---pi~~~~~~~gY~~~d~~~v~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~ 73 (237)
|-+..-+++.+..|+++|++. +-|.-|+..-+.+ .+|=++++|+.+-+.+-++|.+-+.--.+=..
T Consensus 306 GET~eEvie~m~dLrelGVDivtIGQYL~Ps~~h~~V------~~yv~P~~F~~~~~~a~~~Gf~~v~sgPlVRS 374 (398)
T PTZ00413 306 GETEEEVRQTLRDLRTAGVSAVTLGQYLQPTKTRLKV------SRYAHPKEFEMWEEEAMKMGFLYCASGPLVRS 374 (398)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEeeccccCCCcccCCc------eeccCHHHHHHHHHHHHHcCCceEEecCcccc
Confidence 334445778889999999875 2233443332222 67779999999999999999987766444433
No 216
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=50.78 E-value=34 Score=27.00 Aligned_cols=33 Identities=18% Similarity=0.098 Sum_probs=27.3
Q ss_pred Cccccccc-CCCCCHHHHHHHHHHHHHcCCEEEE
Q psy9004 34 LVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLL 66 (237)
Q Consensus 34 ~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~Vil 66 (237)
...|..-+ +.-|...++.++++.||++|++||+
T Consensus 71 ~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~ 104 (179)
T TIGR03127 71 KKGDLLIAISGSGETESLVTVAKKAKEIGATVAA 104 (179)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEE
Confidence 34555556 8889999999999999999999975
No 217
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=50.76 E-value=19 Score=31.66 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEEe
Q psy9004 47 PEQLKYLVDECHKAGLYVLLDV 68 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~VilD~ 68 (237)
.+.+.++++.|+++|.+|++|.
T Consensus 145 ~d~y~~li~~~~~~g~~vilD~ 166 (310)
T COG1105 145 PDAYAELIRILRQQGAKVILDT 166 (310)
T ss_pred HHHHHHHHHHHHhcCCeEEEEC
Confidence 7899999999999999999994
No 218
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=50.69 E-value=27 Score=32.31 Aligned_cols=64 Identities=13% Similarity=0.052 Sum_probs=41.2
Q ss_pred HhhHHHHHcCccccCccCCCCCCCCcccccccCCCCCHHHHHHHHHHHHHcCCE-EEEEeeccccCCC
Q psy9004 10 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLY-VLLDVVHSHASKN 76 (237)
Q Consensus 10 ~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v~~~Gt~~~l~~lv~~~H~~Gi~-VilD~v~nh~~~~ 76 (237)
+.|..|+++|++. +.-+.. ..++.-...+.+-.+.++..+.++.+++.|+. |-+|+.++..+..
T Consensus 153 e~l~~L~~~G~~r-vsiGvQ--S~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgqt 217 (453)
T PRK13347 153 EMLQALAALGFNR-ASFGVQ--DFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGLPHQT 217 (453)
T ss_pred HHHHHHHHcCCCE-EEECCC--CCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCCC
Confidence 5666667777654 222221 11111122234557789999999999999997 8899998876654
No 219
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=50.47 E-value=9.5 Score=30.83 Aligned_cols=22 Identities=41% Similarity=0.536 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEE
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLD 67 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD 67 (237)
+++++++||+.||.+|+++-|-
T Consensus 165 ~~e~l~eFvd~Ah~hGL~~AlA 186 (235)
T COG1891 165 DEEELEEFVDLAHEHGLEVALA 186 (235)
T ss_pred cHHHHHHHHHHHHHcchHHHhc
Confidence 5799999999999999998664
No 220
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=50.43 E-value=26 Score=32.43 Aligned_cols=64 Identities=14% Similarity=0.180 Sum_probs=41.2
Q ss_pred HhhHHHHHcCccccCccCCCCCCCCcccccccCCCCCHHHHHHHHHHHHHcCCE-EEEEeeccccCCC
Q psy9004 10 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLY-VLLDVVHSHASKN 76 (237)
Q Consensus 10 ~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v~~~Gt~~~l~~lv~~~H~~Gi~-VilD~v~nh~~~~ 76 (237)
+.|..|+++|++. +.-+..+ .+..-+..+.+-.+.++..+.++.+++.|++ |-+|+.++..+..
T Consensus 152 e~l~~lk~~G~~r-isiGvqS--~~~~~l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt 216 (455)
T TIGR00538 152 DVIDALRDEGFNR-LSFGVQD--FNKEVQQAVNRIQPEEMIFELMNHAREAGFTSINIDLIYGLPKQT 216 (455)
T ss_pred HHHHHHHHcCCCE-EEEcCCC--CCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCCCC
Confidence 4667777777665 3322211 1111112224446788999999999999997 7799988877665
No 221
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=50.34 E-value=13 Score=32.33 Aligned_cols=27 Identities=33% Similarity=0.379 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEeec
Q psy9004 44 FGTPEQLKYLVDECHKAGLYVLLDVVH 70 (237)
Q Consensus 44 ~Gt~~~l~~lv~~~H~~Gi~VilD~v~ 70 (237)
-|...+++++++.||++|+.||+|-+-
T Consensus 145 tG~~~~~~~i~~~~~~~~~~livD~a~ 171 (349)
T cd06454 145 DGDIAPLPELVDLAKKYGAILFVDEAH 171 (349)
T ss_pred CCCccCHHHHHHHHHHcCCEEEEEccc
Confidence 466778999999999999999999884
No 222
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=50.28 E-value=24 Score=33.50 Aligned_cols=65 Identities=9% Similarity=0.017 Sum_probs=44.4
Q ss_pred HHhhHHHHHcCccccCccCCCCCCCCcccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCC
Q psy9004 9 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN 76 (237)
Q Consensus 9 ~~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~ 76 (237)
.++|+.|+++|++. +.-...+.--.+ ...+.+--|.++..+.++.+++.|++|.+|+.++--+..
T Consensus 206 ~e~L~~L~~~G~~r-VslGVQS~~d~V--L~~inRght~~~v~~Ai~~lr~~G~~v~~~LM~GLPgqt 270 (522)
T TIGR01211 206 EEHIDRMLKLGATR-VELGVQTIYNDI--LERTKRGHTVRDVVEATRLLRDAGLKVVYHIMPGLPGSS 270 (522)
T ss_pred HHHHHHHHHcCCCE-EEEECccCCHHH--HHHhCCCCCHHHHHHHHHHHHHcCCeEEEEeecCCCCCC
Confidence 46889999999876 333221111111 111244456889999999999999999999999876654
No 223
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=50.07 E-value=25 Score=31.81 Aligned_cols=66 Identities=20% Similarity=0.205 Sum_probs=50.0
Q ss_pred ChHHhhHHHHHcCccc-cCccCCCCCCCCccccccc--CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCC
Q psy9004 7 GTPEQLKYLVDECHKA-GLFGTPEQLKYLVDECHKA--GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN 76 (237)
Q Consensus 7 Gl~~~L~yl~~lGv~~-pi~~~~~~~gY~~~d~~~v--~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~ 76 (237)
.+.+-|..|++.|.++ |...+. |....+..+ |.=-+.+..-+.++.||+.||+-..=+++.|.-..
T Consensus 159 s~~E~l~~Lk~aGldsmpg~~ae----il~e~vr~~~~p~K~~~~~wle~~~~Ah~lGI~~tatml~Gh~E~~ 227 (370)
T COG1060 159 SYEEVLKRLKEAGLDSMPGGGAE----ILSEEVRKIHCPPKKSPEEWLEIHERAHRLGIPTTATMLLGHVETR 227 (370)
T ss_pred CHHHHHHHHHHcCCCcCcCccee----echHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEEEecCCH
Confidence 4567788999999877 555555 444444444 34446788999999999999999999999998763
No 224
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=49.91 E-value=19 Score=31.45 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccc
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSH 72 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh 72 (237)
+.++++++++.|+++|+.||+|-+.-.
T Consensus 143 ~~~~~~~l~~~a~~~~~~ii~De~y~~ 169 (330)
T TIGR01140 143 PPETLLALAARLRARGGWLVVDEAFID 169 (330)
T ss_pred CHHHHHHHHHHhHhcCCEEEEECcccc
Confidence 478999999999999999999987643
No 225
>PLN02389 biotin synthase
Probab=49.82 E-value=31 Score=31.22 Aligned_cols=59 Identities=12% Similarity=0.021 Sum_probs=39.1
Q ss_pred HhhHHHHHcCccccCccCCCCCCCC--ccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCC
Q psy9004 10 EQLKYLVDECHKAGLFGTPEQLKYL--VDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN 76 (237)
Q Consensus 10 ~~L~yl~~lGv~~pi~~~~~~~gY~--~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~ 76 (237)
+.+..|++.|++. + .+... +.-|-.+ +. .+.++..+.++.||+.||+|..=+++.| +..
T Consensus 179 E~l~~LkeAGld~-~-----~~~LeTs~~~y~~i~~~-~s~e~rl~ti~~a~~~Gi~v~sg~IiGl-gEt 240 (379)
T PLN02389 179 EQAAQLKEAGLTA-Y-----NHNLDTSREYYPNVITT-RSYDDRLETLEAVREAGISVCSGGIIGL-GEA 240 (379)
T ss_pred HHHHHHHHcCCCE-E-----EeeecCChHHhCCcCCC-CCHHHHHHHHHHHHHcCCeEeEEEEECC-CCC
Confidence 4556666666654 1 11122 2223334 32 3789999999999999999999999998 543
No 226
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=49.48 E-value=1.6e+02 Score=24.92 Aligned_cols=19 Identities=26% Similarity=0.146 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHcCCEEE
Q psy9004 47 PEQLKYLVDECHKAGLYVL 65 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~Vi 65 (237)
.+.++.+|+.|+++|++|.
T Consensus 113 ~~~~~~~i~~a~~~G~~v~ 131 (268)
T cd07940 113 LERAVEAVEYAKSHGLDVE 131 (268)
T ss_pred HHHHHHHHHHHHHcCCeEE
Confidence 3667889999999999877
No 227
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=49.45 E-value=47 Score=29.87 Aligned_cols=56 Identities=21% Similarity=0.131 Sum_probs=34.8
Q ss_pred hHHhhHHHHHcCccccCccCCCCCCCCcccccccCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q psy9004 8 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDV 68 (237)
Q Consensus 8 l~~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v~~~Gt~~~l~~lv~~~H~~Gi~VilD~ 68 (237)
+++....+++.|+.. ++.+.....=.|.+|..+ +.+.++.|-+.|++.||.++.++
T Consensus 134 ~~~~A~~lk~~g~~~-~r~~~~kpRtsp~~f~g~----~~e~l~~L~~~~~~~Gl~~~t~v 189 (360)
T PRK12595 134 VEAVAKALKAKGLKL-LRGGAFKPRTSPYDFQGL----GVEGLKILKQVADEYGLAVISEI 189 (360)
T ss_pred HHHHHHHHHHcCCcE-EEccccCCCCCCccccCC----CHHHHHHHHHHHHHcCCCEEEee
Confidence 455566788888765 333221101111122222 36899999999999999999874
No 228
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=49.22 E-value=12 Score=28.21 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEeecc
Q psy9004 45 GTPEQLKYLVDECHKAGLYVLLDVVHS 71 (237)
Q Consensus 45 Gt~~~l~~lv~~~H~~Gi~VilD~v~n 71 (237)
|...+++++++.||++|+.+|+|-+..
T Consensus 106 g~~~~~~~l~~~~~~~~~~li~D~a~~ 132 (170)
T cd01494 106 GVLVPLKEIRKIAKEYGILLLVDAASA 132 (170)
T ss_pred CeEcCHHHHHHHHHHcCCEEEEecccc
Confidence 334556899999999999999996644
No 229
>PRK07050 cystathionine beta-lyase; Provisional
Probab=49.16 E-value=25 Score=31.89 Aligned_cols=31 Identities=10% Similarity=0.080 Sum_probs=26.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeeccc
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVHSH 72 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh 72 (237)
...|...+++++++.||++|+.||+|-....
T Consensus 161 Np~~~~~di~~I~~ia~~~gi~livD~a~a~ 191 (394)
T PRK07050 161 SVTMEVPDVPAITAAARARGVVTAIDNTYSA 191 (394)
T ss_pred CCCccHhhHHHHHHHHHHcCCEEEEECCccc
Confidence 3346789999999999999999999988654
No 230
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=49.03 E-value=21 Score=32.29 Aligned_cols=23 Identities=30% Similarity=0.574 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEe
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDV 68 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~ 68 (237)
|.++|+.+.+-|.++|++||-|-
T Consensus 176 t~eeL~~i~elc~kh~v~VISDE 198 (388)
T COG1168 176 TKEELRKIAELCLRHGVRVISDE 198 (388)
T ss_pred cHHHHHHHHHHHHHcCCEEEeec
Confidence 37999999999999999999873
No 231
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=48.94 E-value=32 Score=31.79 Aligned_cols=64 Identities=14% Similarity=0.092 Sum_probs=42.8
Q ss_pred HhhHHHHHcCccccCccCCCCCCCCcccccccCCCCCHHHHHHHHHHHHHcCC-EEEEEeeccccCCC
Q psy9004 10 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL-YVLLDVVHSHASKN 76 (237)
Q Consensus 10 ~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v~~~Gt~~~l~~lv~~~H~~Gi-~VilD~v~nh~~~~ 76 (237)
+.|..|+++|++. +.-+..+ .+..-...+.+-.+.++..+.++.+++.|+ .|-+|+.++..+..
T Consensus 152 e~l~~l~~aG~~r-isiGvqS--~~~~~L~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt 216 (453)
T PRK09249 152 EMLDALRELGFNR-LSLGVQD--FDPEVQKAVNRIQPFEFTFALVEAARELGFTSINIDLIYGLPKQT 216 (453)
T ss_pred HHHHHHHHcCCCE-EEECCCC--CCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEccCCCCC
Confidence 5667777777665 3222211 111112223555688999999999999999 79999998877765
No 232
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=48.76 E-value=18 Score=31.21 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEee
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVV 69 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v 69 (237)
+.++++++++.||++|+.||+|-.
T Consensus 144 ~~~~l~~i~~~~~~~~~~livDea 167 (338)
T cd06502 144 PLDELKAISALAKENGLPLHLDGA 167 (338)
T ss_pred CHHHHHHHHHHHHHcCCeEeechH
Confidence 578999999999999999999953
No 233
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=48.75 E-value=15 Score=33.20 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=24.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEee
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVV 69 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v 69 (237)
..-|...+++++++.||++|+.|++|.+
T Consensus 182 ~~tG~~~~~~~i~~~~~~~g~~~~vD~a 209 (406)
T TIGR01814 182 YYTGQLFDMAAITRAAHAKGALVGFDLA 209 (406)
T ss_pred cccceecCHHHHHHHHHHcCCEEEEEcc
Confidence 4568888999999999999999999965
No 234
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=48.70 E-value=36 Score=28.90 Aligned_cols=50 Identities=18% Similarity=0.075 Sum_probs=31.0
Q ss_pred ChHHhhHHHHHcCccccCccCCCCCCCCcccccccCCCCCHHHHHHHHHHHHHcCCEEEEEee
Q psy9004 7 GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVV 69 (237)
Q Consensus 7 Gl~~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v~~~Gt~~~l~~lv~~~H~~Gi~VilD~v 69 (237)
.+-+-|.+.+++|+++ |=-|. |. ..+ +.++..++|+.+++.|++|+-.+=
T Consensus 85 ~~~~yl~~~k~lGf~~-IEiSd---Gt-----i~l----~~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 85 KFDEYLEECKELGFDA-IEISD---GT-----IDL----PEEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp -HHHHHHHHHHCT-SE-EEE-----SS-----S-------HHHHHHHHHHHCCTTSEEEEEES
T ss_pred hHHHHHHHHHHcCCCE-EEecC---Cc-----eeC----CHHHHHHHHHHHHHCCCEEeeccc
Confidence 3445667777777766 21111 00 111 378899999999999999998864
No 235
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=48.61 E-value=25 Score=25.82 Aligned_cols=33 Identities=15% Similarity=0.182 Sum_probs=27.1
Q ss_pred Cccccccc-CCCCCHHHHHHHHHHHHHcCCEEEE
Q psy9004 34 LVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLL 66 (237)
Q Consensus 34 ~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~Vil 66 (237)
...|..-+ +.=|...++.+.++.||++|++||.
T Consensus 46 ~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~ 79 (128)
T cd05014 46 TPGDVVIAISNSGETDELLNLLPHLKRRGAPIIA 79 (128)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEE
Confidence 34455556 7788899999999999999999875
No 236
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=48.56 E-value=16 Score=32.60 Aligned_cols=29 Identities=10% Similarity=0.157 Sum_probs=24.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVH 70 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~ 70 (237)
...|...+++++++.||++|+.||+|-+.
T Consensus 136 np~g~~~dl~~i~~la~~~g~~livD~t~ 164 (369)
T cd00614 136 NPTLKVVDIEAIAELAHEHGALLVVDNTF 164 (369)
T ss_pred CCCCeecCHHHHHHHHHHcCCEEEEECCC
Confidence 34567778999999999999999999764
No 237
>PLN00197 beta-amylase; Provisional
Probab=48.45 E-value=42 Score=31.88 Aligned_cols=58 Identities=17% Similarity=0.156 Sum_probs=42.1
Q ss_pred ChHHhhHHHHHcCccc-------cCccCCCCCCCCcccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCC
Q psy9004 7 GTPEQLKYLVDECHKA-------GLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN 76 (237)
Q Consensus 7 Gl~~~L~yl~~lGv~~-------pi~~~~~~~gY~~~d~~~v~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~ 76 (237)
+|...|..||.+||.. +|.+..+...| ...-.++|++-+++.|+||.+=+.+.-++.+
T Consensus 128 ~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~Y------------dWsgY~~L~~mvr~~GLKlq~VmSFHqCGGN 192 (573)
T PLN00197 128 AMKASLQALKSAGVEGIMMDVWWGLVERESPGVY------------NWGGYNELLEMAKRHGLKVQAVMSFHQCGGN 192 (573)
T ss_pred HHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcC------------CcHHHHHHHHHHHHcCCeEEEEEEecccCCC
Confidence 6889999999999875 23332222223 2556788888888999999988888777665
No 238
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=48.22 E-value=22 Score=32.47 Aligned_cols=29 Identities=21% Similarity=0.338 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEecc
Q psy9004 111 SEIEVLRFLLSNLRWYLEEYQFDGFRFDG 139 (237)
Q Consensus 111 ~~p~v~~~i~~~~~~w~~~~giDGfR~D~ 139 (237)
++++.|+.+++.+..+++++++||+-||-
T Consensus 101 ~~~~~R~~Fi~siv~~l~~~~fDGidiDW 129 (413)
T cd02873 101 ESSESRNAFINSAHSLLKTYGFDGLDLAW 129 (413)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeEeee
Confidence 46889999999988888889999999983
No 239
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=47.68 E-value=18 Score=27.53 Aligned_cols=33 Identities=12% Similarity=0.137 Sum_probs=24.8
Q ss_pred Cccccccc-CCCCCHHHHHHHHHHHHHcCCEEEE
Q psy9004 34 LVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLL 66 (237)
Q Consensus 34 ~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~Vil 66 (237)
.+.|..-+ +.-|+..-.-+.++.||++||+||.
T Consensus 102 ~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIa 135 (138)
T PF13580_consen 102 RPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIA 135 (138)
T ss_dssp -TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEE
Confidence 56666667 8888888899999999999999984
No 240
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=47.61 E-value=29 Score=29.41 Aligned_cols=60 Identities=22% Similarity=0.188 Sum_probs=37.6
Q ss_pred hHHhhHHHHHcCccccCccCCCCCCCC--------ccccccc-CCC--------CCHHHHHHHHHHHHHcCCEEEEEee
Q psy9004 8 TPEQLKYLVDECHKAGLFGTPEQLKYL--------VDECHKA-GLF--------GTPEQLKYLVDECHKAGLYVLLDVV 69 (237)
Q Consensus 8 l~~~L~yl~~lGv~~pi~~~~~~~gY~--------~~d~~~v-~~~--------Gt~~~l~~lv~~~H~~Gi~VilD~v 69 (237)
+...+..|+++|+...+ ..-.-||. +.|+-++ ..| ....-++.+|+.||+.||+||...|
T Consensus 138 ~~~~l~~L~~~G~~ial--DDFGtG~ssl~~L~~l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~vvaEGV 214 (256)
T COG2200 138 ALALLRQLRELGVRIAL--DDFGTGYSSLSYLKRLPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVVAEGV 214 (256)
T ss_pred HHHHHHHHHHCCCeEEE--ECCCCCHHHHHHHhhCCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCCEEEEeec
Confidence 45577888899964311 11112232 3344444 333 2235699999999999999999876
No 241
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=47.46 E-value=1.9e+02 Score=24.99 Aligned_cols=57 Identities=9% Similarity=0.183 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccCCCccccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy9004 47 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWY 126 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~~w 126 (237)
.+.++++|+.|+++|++|.+.+. +.+.. |. ..| +++.+.++..
T Consensus 114 l~~~~~~i~~a~~~G~~v~~~~~--d~~~~---------------~r-----------------~~~---~~~~~~~~~~ 156 (280)
T cd07945 114 FADIREVIEYAIKNGIEVNIYLE--DWSNG---------------MR-----------------DSP---DYVFQLVDFL 156 (280)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEE--eCCCC---------------Cc-----------------CCH---HHHHHHHHHH
Confidence 36688889999999999887653 12211 00 012 3677777777
Q ss_pred HHhCCCcEEEe-cccC
Q psy9004 127 LEEYQFDGFRF-DGVT 141 (237)
Q Consensus 127 ~~~~giDGfR~-D~~~ 141 (237)
.+ .|+|-+++ |++.
T Consensus 157 ~~-~G~~~i~l~DT~G 171 (280)
T cd07945 157 SD-LPIKRIMLPDTLG 171 (280)
T ss_pred HH-cCCCEEEecCCCC
Confidence 77 79998887 4443
No 242
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=47.43 E-value=31 Score=31.33 Aligned_cols=64 Identities=17% Similarity=0.100 Sum_probs=41.8
Q ss_pred HhhHHHHHcCccccCccCCCCCCCCcccccccCCCCCHHHHHHHHHHHHHcCCE-EEEEeeccccCCC
Q psy9004 10 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLY-VLLDVVHSHASKN 76 (237)
Q Consensus 10 ~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v~~~Gt~~~l~~lv~~~H~~Gi~-VilD~v~nh~~~~ 76 (237)
++|..|++.|++. +.-...+ .+..-...+.+--+.++..+.++.+++.|+. |-+|+.++.-+..
T Consensus 116 e~l~~l~~~Gvnr-islGvQS--~~d~~L~~l~R~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgqt 180 (400)
T PRK07379 116 EQLQGYRSLGVNR-VSLGVQA--FQDELLALCGRSHRVKDIFAAVDLIHQAGIENFSLDLISGLPHQT 180 (400)
T ss_pred HHHHHHHHCCCCE-EEEEccc--CCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 5677777777765 3322211 1111111224445788999999999999999 8899999887765
No 243
>PRK08444 hypothetical protein; Provisional
Probab=47.37 E-value=37 Score=30.46 Aligned_cols=64 Identities=13% Similarity=0.010 Sum_probs=43.8
Q ss_pred hHHhhHHHHHcCccccCccCCCCCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeecccc
Q psy9004 8 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHA 73 (237)
Q Consensus 8 l~~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~ 73 (237)
+.+.|..|++.|+.. + +..+.-=+++.=+..+ |.=-+.+++.++++.||+.||++--=+.+.|.
T Consensus 150 ~~e~l~~LkeAGl~~-~-~g~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~~Gi~~~sg~l~G~g 214 (353)
T PRK08444 150 YEEVLEDMLEYGVDS-M-PGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWHKKGKMSNATMLFGHI 214 (353)
T ss_pred HHHHHHHHHHhCccc-C-CCCCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHHcCCCccceeEEecC
Confidence 446677888888765 1 1100000122223456 76777899999999999999999999999988
No 244
>PLN02509 cystathionine beta-lyase
Probab=47.32 E-value=27 Score=32.52 Aligned_cols=29 Identities=17% Similarity=0.223 Sum_probs=25.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVH 70 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~ 70 (237)
...|...+++++++.||++|+.||+|-..
T Consensus 228 NPtG~i~Dl~~I~~lAk~~g~~lIVD~A~ 256 (464)
T PLN02509 228 NPRQQISDIRKIAEMAHAQGALVLVDNSI 256 (464)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEECCc
Confidence 45688899999999999999999999773
No 245
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=46.24 E-value=2.1e+02 Score=25.36 Aligned_cols=24 Identities=4% Similarity=0.021 Sum_probs=16.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEee
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVV 69 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v 69 (237)
..+..++.++.++++|++|.+-+.
T Consensus 113 e~~~~~~~i~~ak~~G~~v~~~l~ 136 (337)
T PRK08195 113 EADVSEQHIGLARELGMDTVGFLM 136 (337)
T ss_pred hHHHHHHHHHHHHHCCCeEEEEEE
Confidence 345677777777777777665544
No 246
>PLN02905 beta-amylase
Probab=46.22 E-value=43 Score=32.37 Aligned_cols=59 Identities=17% Similarity=0.147 Sum_probs=42.6
Q ss_pred CChHHhhHHHHHcCccc-------cCccCCCCCCCCcccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCC
Q psy9004 6 FGTPEQLKYLVDECHKA-------GLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN 76 (237)
Q Consensus 6 ~Gl~~~L~yl~~lGv~~-------pi~~~~~~~gY~~~d~~~v~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~ 76 (237)
++|...|..||.+||.. +|.+......| ...-.++|++-+++.|+||.+=+.+.-++.+
T Consensus 286 ~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~Y------------dWsgY~~L~~mvr~~GLKlqvVMSFHqCGGN 351 (702)
T PLN02905 286 DGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEY------------NWNGYKRLFQMVRELKLKLQVVMSFHECGGN 351 (702)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcC------------CcHHHHHHHHHHHHcCCeEEEEEEecccCCC
Confidence 46889999999999875 22232222222 2566788888888999999988888777665
No 247
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=46.12 E-value=48 Score=28.87 Aligned_cols=63 Identities=16% Similarity=0.118 Sum_probs=41.3
Q ss_pred HHhhHHHHHcCccccCcc-CCCCCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccC
Q psy9004 9 PEQLKYLVDECHKAGLFG-TPEQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 74 (237)
Q Consensus 9 ~~~L~yl~~lGv~~pi~~-~~~~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~ 74 (237)
.+.|..|++.|+.. +.. +... .+..-...+ |.--+.++..+.++.||+.||++..-+.+.|.-
T Consensus 107 ~e~l~~LkeAGl~~-i~~~g~E~--l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~~s~~iiG~~E 171 (309)
T TIGR00423 107 EEVLKRLKKAGLDS-MPGTGAEI--LDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPTTATMMFGHVE 171 (309)
T ss_pred HHHHHHHHHcCCCc-CCCCcchh--cCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEecCCC
Confidence 46788888888776 221 1000 011111233 433477888899999999999999999999763
No 248
>PF05691 Raffinose_syn: Raffinose synthase or seed imbibition protein Sip1; InterPro: IPR008811 This family consists of several raffinose synthase proteins, also known as seed imbibition (Sip1) proteins. Raffinose (O-alpha- D-galactopyranosyl- (1-->6)- O-alpha- D-glucopyranosyl-(1-->2)- O-beta- D-fructofuranoside) is a widespread oligosaccharide in plant seeds and other tissues. Raffinose synthase (2.4.1.82 from EC) is the key enzyme that channels sucrose into the raffinose oligosaccharide pathway [].
Probab=45.99 E-value=3.1e+02 Score=27.38 Aligned_cols=68 Identities=19% Similarity=0.157 Sum_probs=38.0
Q ss_pred CCHH-HHHHHHHHHHHHHHhCCCcEEEecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhhCCCeE
Q psy9004 111 SEIE-VLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEII 189 (237)
Q Consensus 111 ~~p~-v~~~i~~~~~~w~~~~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~ 189 (237)
-+|+ +.++..++..++.+ .||||..+|+-..+... . +..|..+ .-+..+.+.+.+.+.+..++.-
T Consensus 361 v~p~~~~~FYd~~hsyL~s-~GVDgVKVD~Q~~l~~l----~--------~~~ggrv-~la~ay~~AL~~S~~r~F~~~~ 426 (747)
T PF05691_consen 361 VDPEDAFRFYDDFHSYLAS-AGVDGVKVDVQAILETL----G--------EGYGGRV-ELARAYQDALEASVARHFSGNG 426 (747)
T ss_pred cCHHHHHHHHHHHHHHHHH-cCCCEEEEchhhhhhhh----h--------ccCCcHH-HHHHHHHHHHHHHHHHhCCCCC
Confidence 3555 55555555665555 89999999987654211 0 1111111 1234566777777766666544
Q ss_pred EEE
Q psy9004 190 TIA 192 (237)
Q Consensus 190 ~i~ 192 (237)
+|+
T Consensus 427 vI~ 429 (747)
T PF05691_consen 427 VIN 429 (747)
T ss_pred eEE
Confidence 554
No 249
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=45.92 E-value=47 Score=26.24 Aligned_cols=33 Identities=21% Similarity=0.148 Sum_probs=27.1
Q ss_pred Cccccccc-CCCCCHHHHHHHHHHHHHcCCEEEE
Q psy9004 34 LVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLL 66 (237)
Q Consensus 34 ~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~Vil 66 (237)
...|..-+ +.-|...++.++++.|+++|++||.
T Consensus 74 ~~~D~vI~iS~sG~t~~~i~~~~~ak~~g~~iI~ 107 (179)
T cd05005 74 GPGDLLIAISGSGETSSVVNAAEKAKKAGAKVVL 107 (179)
T ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHCCCeEEE
Confidence 44555556 8888899999999999999999864
No 250
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=45.82 E-value=43 Score=29.55 Aligned_cols=62 Identities=16% Similarity=0.095 Sum_probs=41.0
Q ss_pred HHhhHHHHHcCccccCccCCCCCCCCcc--c-cccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCC
Q psy9004 9 PEQLKYLVDECHKAGLFGTPEQLKYLVD--E-CHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN 76 (237)
Q Consensus 9 ~~~L~yl~~lGv~~pi~~~~~~~gY~~~--d-~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~ 76 (237)
.+.+..|++.|+.. +.. .|-.+. . ...+ |.=.+.++..+.++.||+.||+|..-+.+.| +..
T Consensus 143 ~e~l~~Lk~aG~~~-~~~----~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGl-gEt 208 (340)
T TIGR03699 143 REVLERLKEAGLDS-IPG----GGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFGH-VET 208 (340)
T ss_pred HHHHHHHHHcCCCc-CCC----CcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEeeC-CCC
Confidence 46677777877765 210 011111 0 1123 4445788999999999999999999999997 553
No 251
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=45.81 E-value=27 Score=29.71 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEe
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDV 68 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~ 68 (237)
+.+++++|++.||+.||.+++.+
T Consensus 136 ~~~~l~~l~~~a~~lGle~LVEV 158 (247)
T PRK13957 136 TPSQIKSFLKHASSLGMDVLVEV 158 (247)
T ss_pred CHHHHHHHHHHHHHcCCceEEEE
Confidence 36799999999999999999996
No 252
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=45.67 E-value=22 Score=31.88 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=26.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVHS 71 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~n 71 (237)
...|+..+++++++.||++|+.|++|-+.-
T Consensus 169 ~~tG~~~~l~~I~~la~~~g~~livD~a~~ 198 (387)
T PRK09331 169 GNYGNLADAKKVAKVAHEYGIPFLLNGAYT 198 (387)
T ss_pred CCCcccccHHHHHHHHHHcCCEEEEECCcc
Confidence 457889999999999999999999998743
No 253
>PRK09936 hypothetical protein; Provisional
Probab=45.53 E-value=38 Score=29.54 Aligned_cols=53 Identities=15% Similarity=0.091 Sum_probs=35.2
Q ss_pred HhhHHHHHcCccccCccCCCCCCCCcccccccCCCCCH-HHHHHHHHHHHHcCCEEEEEeecc
Q psy9004 10 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTP-EQLKYLVDECHKAGLYVLLDVVHS 71 (237)
Q Consensus 10 ~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v~~~Gt~-~~l~~lv~~~H~~Gi~VilD~v~n 71 (237)
+.+..++.+|+++-|.-=+. |.- +.||+. --|.+.+++|++.||+|++=+-++
T Consensus 42 ~~~~~~~~~G~~tLivQWt~---yG~------~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~D 95 (296)
T PRK09936 42 GLWSQLRLQGFDTLVVQWTR---YGD------ADFGGQRGWLAKRLAAAQQAGLKLVVGLYAD 95 (296)
T ss_pred HHHHHHHHcCCcEEEEEeee---ccC------CCcccchHHHHHHHHHHHHcCCEEEEcccCC
Confidence 35677888888772222111 100 345554 478999999999999999987654
No 254
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=45.46 E-value=28 Score=25.57 Aligned_cols=32 Identities=16% Similarity=0.161 Sum_probs=27.0
Q ss_pred ccccccc-CCCCCHHHHHHHHHHHHHcCCEEEE
Q psy9004 35 VDECHKA-GLFGTPEQLKYLVDECHKAGLYVLL 66 (237)
Q Consensus 35 ~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~Vil 66 (237)
..|..-+ +.-|...+..+.++.|+++|++||.
T Consensus 43 ~~dl~I~iS~SG~t~e~i~~~~~a~~~g~~iI~ 75 (119)
T cd05017 43 RKTLVIAVSYSGNTEETLSAVEQAKERGAKIVA 75 (119)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEE
Confidence 4455556 8889999999999999999999874
No 255
>PRK08960 hypothetical protein; Provisional
Probab=45.43 E-value=28 Score=31.11 Aligned_cols=29 Identities=14% Similarity=0.188 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccC
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSHAS 74 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh~~ 74 (237)
+.++++++++.||++|+-||+|-++.+..
T Consensus 183 ~~~~~~~l~~~~~~~~~~li~De~Y~~~~ 211 (387)
T PRK08960 183 SRDELAALSQALRARGGHLVVDEIYHGLT 211 (387)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEccccccc
Confidence 37899999999999999999998876543
No 256
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=45.35 E-value=18 Score=31.90 Aligned_cols=29 Identities=24% Similarity=0.455 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q psy9004 43 LFGTPEQLKYLVDECHKAGLYVLLDVVHS 71 (237)
Q Consensus 43 ~~Gt~~~l~~lv~~~H~~Gi~VilD~v~n 71 (237)
..|+..+++++++.||++|+.||+|-+.-
T Consensus 151 ~tG~~~~~~~i~~~~~~~~~~vivD~a~~ 179 (361)
T cd06452 151 NYGNLHDAKKIAKVCHEYGVPLLLNGAYT 179 (361)
T ss_pred CCeeeccHHHHHHHHHHcCCeEEEECCcc
Confidence 57888999999999999999999998754
No 257
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=45.27 E-value=40 Score=30.58 Aligned_cols=65 Identities=12% Similarity=0.021 Sum_probs=42.9
Q ss_pred HHhhHHHHHcCccccCccCCCCCCCCcccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCC
Q psy9004 9 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN 76 (237)
Q Consensus 9 ~~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~ 76 (237)
.++|..|+++|++- +.-+..+ .+..-+..+.+.-+.++..+.++.|++.+..|-+|++++..+..
T Consensus 111 ~e~l~~l~~~GvnR-iSiGvQS--~~d~~L~~lgR~h~~~~~~~ai~~~~~~~~~v~~DlI~GlPgqt 175 (390)
T PRK06582 111 TEKFKAFKLAGINR-VSIGVQS--LKEDDLKKLGRTHDCMQAIKTIEAANTIFPRVSFDLIYARSGQT 175 (390)
T ss_pred HHHHHHHHHCCCCE-EEEECCc--CCHHHHHHcCCCCCHHHHHHHHHHHHHhCCcEEEEeecCCCCCC
Confidence 36777777888765 3322211 11111111255556888888899999999999999999988775
No 258
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=44.98 E-value=36 Score=30.55 Aligned_cols=35 Identities=17% Similarity=0.291 Sum_probs=29.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCE-EEEEeeccccCCC
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLY-VLLDVVHSHASKN 76 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~-VilD~v~nh~~~~ 76 (237)
.+-.+.++..+.++.+++.|+. |-+|+.++..+..
T Consensus 130 ~r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPgqt 165 (377)
T PRK08599 130 GRTHNEEDVYEAIANAKKAGFDNISIDLIYALPGQT 165 (377)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCCCC
Confidence 4455789999999999999998 6799999887765
No 259
>KOG2806|consensus
Probab=44.95 E-value=55 Score=30.15 Aligned_cols=93 Identities=9% Similarity=0.152 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHcC--CEEEEEeeccccCCCccccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q psy9004 47 PEQLKYLVDECHKAG--LYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLR 124 (237)
Q Consensus 47 ~~~l~~lv~~~H~~G--i~VilD~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~ 124 (237)
...|-.+.+.++++. +|||+-+ +..+ .....| ..-.++++-|+-+++.+.
T Consensus 105 ~~~f~~~~~~~k~~n~~vK~llSI-----GG~~---------~ns~~f--------------s~~~s~~~~r~~FI~Sii 156 (432)
T KOG2806|consen 105 MNRFSSYNQTAKSSNPTVKVMISI-----GGSH---------GNSGLF--------------SLVLSDRMIRAKFIESVV 156 (432)
T ss_pred hhhhHHHHHHHHhhCCCceEEEEe-----cCCC---------CCccch--------------hhhhcChHHHHHHHHHHH
Confidence 346888888888764 8888821 1110 001111 133467888998888888
Q ss_pred HHHHhCCCcEEEecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhhC
Q psy9004 125 WYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKY 185 (237)
Q Consensus 125 ~w~~~~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 185 (237)
..++++++||.-+|--- +. .+..+...-..|++|++.++.+..
T Consensus 157 ~fl~~~~fDGvDL~We~-----------------P~-~~~~d~~~~~~~i~elr~~~~~~~ 199 (432)
T KOG2806|consen 157 SFIKDYGFDGVDLAWEW-----------------PL-FTPSDQLEFSRFIQELRSAFARET 199 (432)
T ss_pred HHHHHcCCCceeeeeEC-----------------CC-CchhhHHHHHHHHHHHHHHHHHHh
Confidence 88888999999887532 10 000112334678999998887653
No 260
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=44.88 E-value=29 Score=25.41 Aligned_cols=33 Identities=12% Similarity=-0.031 Sum_probs=27.3
Q ss_pred Cccccccc-CCCCCHHHHHHHHHHHHHcCCEEEE
Q psy9004 34 LVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLL 66 (237)
Q Consensus 34 ~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~Vil 66 (237)
...|..-+ +.=|...+..+.++.|+++|.+||.
T Consensus 45 ~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~ 78 (126)
T cd05008 45 DEDTLVIAISQSGETADTLAALRLAKEKGAKTVA 78 (126)
T ss_pred CCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEE
Confidence 34555556 8889889999999999999999874
No 261
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=44.78 E-value=32 Score=30.66 Aligned_cols=27 Identities=15% Similarity=0.281 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEeec
Q psy9004 44 FGTPEQLKYLVDECHKAGLYVLLDVVH 70 (237)
Q Consensus 44 ~Gt~~~l~~lv~~~H~~Gi~VilD~v~ 70 (237)
.|+..+++++++.||++|+.||+|-++
T Consensus 149 ~~~~~dl~~I~~la~~~g~~lIvD~t~ 175 (366)
T PRK08247 149 LMQETDIAAIAKIAKKHGLLLIVDNTF 175 (366)
T ss_pred CCcHHHHHHHHHHHHHcCCEEEEECCC
Confidence 578899999999999999999999876
No 262
>PF14885 GHL15: Hypothetical glycosyl hydrolase family 15
Probab=44.69 E-value=61 Score=22.44 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=26.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCcEEEeccc
Q psy9004 107 LFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGV 140 (237)
Q Consensus 107 ~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~~ 140 (237)
..+..+|..|++.++.+..-+..-++||+-+|+-
T Consensus 43 ~~~~~~~~~r~~w~~~v~e~~~~s~~DGv~~Dn~ 76 (79)
T PF14885_consen 43 MYVWSCPDYRRYWVDAVVEELQNSPWDGVFADND 76 (79)
T ss_pred eccCCcchHHHHHHHHHHHHHhcCccceeeeecc
Confidence 3455559999999988877666679999999963
No 263
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=44.57 E-value=26 Score=31.42 Aligned_cols=57 Identities=25% Similarity=0.254 Sum_probs=34.6
Q ss_pred ChHHhhHHHHHcCccccCccCCCCCCCCcccccccCCCCCHHHHHHHHHHHHHcCCEEEEEee
Q psy9004 7 GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVV 69 (237)
Q Consensus 7 Gl~~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v~~~Gt~~~l~~lv~~~H~~Gi~VilD~v 69 (237)
|=++++...-+.|.++ +|-+-. .|.-..+. ..| +.++|++.|+-||++|.|+++=+-
T Consensus 14 g~l~~l~~ai~~GADa-VY~G~~--~~~~R~~a--~nf-s~~~l~e~i~~ah~~gkk~~V~~N 70 (347)
T COG0826 14 GNLEDLKAAIAAGADA-VYIGEK--EFGLRRRA--LNF-SVEDLAEAVELAHSAGKKVYVAVN 70 (347)
T ss_pred CCHHHHHHHHHcCCCE-EEeCCc--cccccccc--ccC-CHHHHHHHHHHHHHcCCeEEEEec
Confidence 4456666666677776 554421 11111000 111 578899999999999999986543
No 264
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=44.52 E-value=2.4e+02 Score=25.34 Aligned_cols=24 Identities=4% Similarity=-0.057 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEe-cccC
Q psy9004 117 RFLLSNLRWYLEEYQFDGFRF-DGVT 141 (237)
Q Consensus 117 ~~i~~~~~~w~~~~giDGfR~-D~~~ 141 (237)
+++.+.++..++ .|+|-+++ |++.
T Consensus 197 ~~l~~~~~~~~~-~Gad~I~l~DT~G 221 (347)
T PLN02746 197 SKVAYVAKELYD-MGCYEISLGDTIG 221 (347)
T ss_pred HHHHHHHHHHHH-cCCCEEEecCCcC
Confidence 367777777777 79998887 4443
No 265
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=44.52 E-value=21 Score=32.01 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEeec
Q psy9004 44 FGTPEQLKYLVDECHKAGLYVLLDVVH 70 (237)
Q Consensus 44 ~Gt~~~l~~lv~~~H~~Gi~VilD~v~ 70 (237)
.|...+++++++.||++|+.||+|-.+
T Consensus 149 tg~~~di~~I~~la~~~gi~vvvD~t~ 175 (364)
T PRK07269 149 LMVEFDIEKVAKLAHAKGAKVIVDNTF 175 (364)
T ss_pred CCeeeCHHHHHHHHHHcCCEEEEECCC
Confidence 466779999999999999999999874
No 266
>PRK07568 aspartate aminotransferase; Provisional
Probab=44.48 E-value=27 Score=31.17 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccc
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSHA 73 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh~ 73 (237)
+.++++++++.||++|+.||+|-++...
T Consensus 180 ~~~~~~~i~~~~~~~~~~ii~De~y~~~ 207 (397)
T PRK07568 180 TKEELEMLAEIAKKHDLFLISDEVYREF 207 (397)
T ss_pred CHHHHHHHHHHHHHCCcEEEEeccchhc
Confidence 4689999999999999999999887544
No 267
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=44.27 E-value=28 Score=32.13 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEee
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVV 69 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v 69 (237)
++++++++.+-|+++||.||.|-.
T Consensus 171 s~~~l~~i~eia~~~gi~li~DaA 194 (431)
T cd00617 171 SMANLREVRELAHKYGIPVVLDAA 194 (431)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEch
Confidence 368899999999999999999988
No 268
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=44.22 E-value=7.6 Score=35.66 Aligned_cols=28 Identities=29% Similarity=0.579 Sum_probs=22.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEee
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVV 69 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v 69 (237)
..+|-.-+++.+++.||++|+.|++|-.
T Consensus 178 TY~Gv~~di~~I~~~~h~~~~~llvDEA 205 (417)
T PF01276_consen 178 TYYGVCYDIKEIAEICHKHGIPLLVDEA 205 (417)
T ss_dssp -TTSEEE-HHHHHHHHCCTECEEEEE-T
T ss_pred CCCeEEECHHHHHHHhcccCCEEEEEcc
Confidence 4457778999999999999999999953
No 269
>PLN02705 beta-amylase
Probab=44.19 E-value=47 Score=32.02 Aligned_cols=59 Identities=14% Similarity=0.085 Sum_probs=42.1
Q ss_pred CChHHhhHHHHHcCccc-------cCccCCCCCCCCcccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCC
Q psy9004 6 FGTPEQLKYLVDECHKA-------GLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN 76 (237)
Q Consensus 6 ~Gl~~~L~yl~~lGv~~-------pi~~~~~~~gY~~~d~~~v~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~ 76 (237)
++|...|..||.+||.. +|.+..+...| ...-.++|++-+++.|+||.+=+.+.-++.+
T Consensus 268 ~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~Y------------dWsgY~~L~~mvr~~GLKlqvVmSFHqCGGN 333 (681)
T PLN02705 268 EGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKY------------VWSGYRELFNIIREFKLKLQVVMAFHEYGGN 333 (681)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcC------------CcHHHHHHHHHHHHcCCeEEEEEEeeccCCC
Confidence 46888999999999875 22232222222 2566788888888999999988888776665
No 270
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=44.17 E-value=36 Score=28.74 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=18.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEE
Q psy9004 46 TPEQLKYLVDECHKAGLYVLL 66 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~Vil 66 (237)
+.++|.+||+.||++|+.+=|
T Consensus 165 ~~~~L~~Fv~~ar~~gL~~aL 185 (235)
T PF04476_consen 165 SEEELAEFVAQARAHGLMCAL 185 (235)
T ss_pred CHHHHHHHHHHHHHccchhhc
Confidence 589999999999999998644
No 271
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=44.16 E-value=27 Score=31.30 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeec
Q psy9004 47 PEQLKYLVDECHKAGLYVLLDVVH 70 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~VilD~v~ 70 (237)
.+++.+++++||+.||-||+.+.+
T Consensus 178 l~~l~~i~~ea~~~GlPlv~~~Yp 201 (348)
T PRK09250 178 IEEISEAFEEAHELGLATVLWSYL 201 (348)
T ss_pred HHHHHHHHHHHHHhCCCEEEEecc
Confidence 367889999999999999996543
No 272
>PLN02651 cysteine desulfurase
Probab=44.16 E-value=20 Score=31.66 Aligned_cols=28 Identities=11% Similarity=0.230 Sum_probs=25.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEee
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVV 69 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v 69 (237)
..-|...+++++++.||++|+.+++|.+
T Consensus 149 n~tG~~~~l~~I~~~~~~~g~~~~vD~a 176 (364)
T PLN02651 149 NEIGVIQPVEEIGELCREKKVLFHTDAA 176 (364)
T ss_pred CCceecccHHHHHHHHHHcCCEEEEEcc
Confidence 4557788999999999999999999976
No 273
>COG4724 Endo-beta-N-acetylglucosaminidase D [Carbohydrate transport and metabolism]
Probab=43.93 E-value=1.2e+02 Score=27.89 Aligned_cols=122 Identities=13% Similarity=0.043 Sum_probs=65.8
Q ss_pred HHHHHHHHHcCCEEEEEeeccccCCCccccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhC
Q psy9004 51 KYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEY 130 (237)
Q Consensus 51 ~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~~w~~~~ 130 (237)
...|++||+.|+.|+=-+-++-.-.. -...|+...- ..+-+=+-|..+ .|+++. +.|
T Consensus 130 aDVIDaaHrNGVPvlGt~Ffppk~yg----------g~~ewv~~mL--------k~dedGsfP~A~-klv~vA----kyY 186 (553)
T COG4724 130 ADVIDAAHRNGVPVLGTLFFPPKNYG----------GDQEWVAEML--------KQDEDGSFPIAR-KLVDVA----KYY 186 (553)
T ss_pred hhhhhhhhcCCCceeeeeecChhhcC----------chHHHHHHHH--------hcCcCCCChhHH-HHHHHH----Hhc
Confidence 46899999999999877766532211 0112221100 001111223333 344443 569
Q ss_pred CCcEEEecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhhCCCeEEEEecCCCCCCcccccccCCc
Q psy9004 131 QFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGT 210 (237)
Q Consensus 131 giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~i~E~~~~~~~~~~~~~~~~~ 210 (237)
|.||+=|.--.. ++ ..+..+=++++...+++..|...-|...-......-++++++-.
T Consensus 187 GfdGwFINqET~-------------G~---------~~~~a~~M~~f~ly~ke~~~~~~himWYDaMt~ng~~~wQn~L~ 244 (553)
T COG4724 187 GFDGWFINQETT-------------GD---------VKPLAEKMRQFMLYSKEYAAKVNHIMWYDAMTYNGGRYWQNGLG 244 (553)
T ss_pred CcceeEeccccc-------------CC---------CcchHHHHHHHHHHHHhcccccceEEeeehhcccCCchhhhccc
Confidence 999998854321 11 11233456777777787778777777766666665566654333
Q ss_pred ccccccc
Q psy9004 211 GFDYRLG 217 (237)
Q Consensus 211 gfd~~~~ 217 (237)
..+++|-
T Consensus 245 d~Na~F~ 251 (553)
T COG4724 245 DYNAQFM 251 (553)
T ss_pred hhhhHHH
Confidence 3444443
No 274
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=43.81 E-value=20 Score=33.04 Aligned_cols=29 Identities=14% Similarity=0.121 Sum_probs=25.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVH 70 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~ 70 (237)
...|...+++++++.||++|+.||+|-..
T Consensus 166 Np~G~v~Dl~~I~~la~~~gi~liVD~t~ 194 (436)
T PRK07812 166 NPQIDVLDIPGVAEVAHEAGVPLIVDNTI 194 (436)
T ss_pred CCCCeecCHHHHHHHHHHcCCEEEEECCC
Confidence 45688899999999999999999999753
No 275
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=43.65 E-value=2.3e+02 Score=25.08 Aligned_cols=23 Identities=17% Similarity=0.133 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhCCCcEEEe-cccC
Q psy9004 118 FLLSNLRWYLEEYQFDGFRF-DGVT 141 (237)
Q Consensus 118 ~i~~~~~~w~~~~giDGfR~-D~~~ 141 (237)
++.+.++...+ +|+|.+++ |++.
T Consensus 144 ~l~~~a~~~~~-~Ga~~i~i~DT~G 167 (333)
T TIGR03217 144 KLAEQAKLMES-YGADCVYIVDSAG 167 (333)
T ss_pred HHHHHHHHHHh-cCCCEEEEccCCC
Confidence 56666665554 89988877 4443
No 276
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=43.62 E-value=30 Score=29.55 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEEe
Q psy9004 47 PEQLKYLVDECHKAGLYVLLDV 68 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~VilD~ 68 (237)
.+++++|++.||+.||.+++.+
T Consensus 144 ~~~l~~l~~~a~~lGle~lVEV 165 (254)
T PF00218_consen 144 DDQLEELLELAHSLGLEALVEV 165 (254)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHHHHHcCCCeEEEE
Confidence 6889999999999999999996
No 277
>PRK05406 LamB/YcsF family protein; Provisional
Probab=43.37 E-value=2.1e+02 Score=24.40 Aligned_cols=108 Identities=16% Similarity=0.151 Sum_probs=62.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCCccccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLS 121 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~ 121 (237)
-+.|+++.+++-|+.|+++|++|= .+|.|- ....++-..++.+..++++.+..
T Consensus 38 ~HAGDp~~M~~tv~lA~~~gV~IG---------------------AHPgyp------D~~gFGRR~m~~s~~el~~~v~y 90 (246)
T PRK05406 38 FHAGDPAVMRRTVRLAKENGVAIG---------------------AHPGYP------DLEGFGRRNMDLSPEELYALVLY 90 (246)
T ss_pred ccCCCHHHHHHHHHHHHHcCCeEc---------------------cCCCCC------ccCCCCCCCCCCCHHHHHHHHHH
Confidence 566899999999999999999872 222221 12234556788888898887765
Q ss_pred HHHHHHHhCCCcEEEecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhhCCCeEEEEe
Q psy9004 122 NLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAE 193 (237)
Q Consensus 122 ~~~~w~~~~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~i~E 193 (237)
-+-.+..-...-|-++..+|- ++ .=|+.. +.+ .++-+.+.+++++..|+..+++=
T Consensus 91 QigAL~~~a~~~g~~l~hVKP-----HG------ALYN~~---~~d---~~~a~av~~ai~~~~~~l~l~~~ 145 (246)
T PRK05406 91 QIGALQAIARAAGGRVSHVKP-----HG------ALYNMA---AKD---PALADAVAEAVAAVDPSLILVGL 145 (246)
T ss_pred HHHHHHHHHHHcCCeeEEeCc-----cH------HHHHHH---hcC---HHHHHHHHHHHHHhCCCcEEEec
Confidence 443333222333445554431 11 000000 011 24556667777888888777773
No 278
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=43.29 E-value=21 Score=32.07 Aligned_cols=29 Identities=10% Similarity=0.172 Sum_probs=25.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVH 70 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~ 70 (237)
...|...+++++++.||++|+.||+|-..
T Consensus 142 nptg~v~dl~~I~~la~~~g~~vivD~a~ 170 (378)
T TIGR01329 142 NPLQKIVDIRKISEMAHAQNALVVVDNTM 170 (378)
T ss_pred CCCCeeecHHHHHHHHHHcCCEEEEECCC
Confidence 45677778999999999999999999863
No 279
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=43.28 E-value=43 Score=29.29 Aligned_cols=54 Identities=24% Similarity=0.264 Sum_probs=34.8
Q ss_pred HhhHHHHHcCccccCccCCCCCCCCcccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCC
Q psy9004 10 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASK 75 (237)
Q Consensus 10 ~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~ 75 (237)
+.|..|++.|+.+.++-+| -+|.++. +++.+++.+|...|.+.+.+..+.-...
T Consensus 173 ~al~~l~eaGi~~~v~v~P-----------IiP~~~d-~e~e~~l~~~~~ag~~~v~~~~l~~~~~ 226 (297)
T COG1533 173 EALKELSEAGIPVGLFVAP-----------IIPGLND-EELERILEAAAEAGARVVVYGTLRLRLD 226 (297)
T ss_pred HHHHHHHHCCCeEEEEEec-----------ccCCCCh-HHHHHHHHHHHHcCCCeeEeeeeeccHH
Confidence 3445555667766444433 1155544 8899999999999999888876654443
No 280
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=43.12 E-value=15 Score=32.56 Aligned_cols=36 Identities=11% Similarity=0.205 Sum_probs=29.2
Q ss_pred Cccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEee
Q psy9004 34 LVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVV 69 (237)
Q Consensus 34 ~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v 69 (237)
...-+..+ ..-|...+++++.+.||++|+.+++|.+
T Consensus 141 ~lv~~~~~~~~tG~~~pi~~I~~~~~~~~~~~~vD~~ 177 (371)
T PF00266_consen 141 RLVSISHVENSTGVRNPIEEIAKLAHEYGALLVVDAA 177 (371)
T ss_dssp SEEEEESBETTTTBBSSHHHHHHHHHHTTSEEEEE-T
T ss_pred ceEEeecccccccEEeeeceehhhhhccCCceeEech
Confidence 34445566 7778888999999999999999999976
No 281
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=43.08 E-value=35 Score=30.75 Aligned_cols=64 Identities=8% Similarity=-0.020 Sum_probs=41.8
Q ss_pred HhhHHHHHcCccccCccCCCCCCCCcccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCC
Q psy9004 10 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN 76 (237)
Q Consensus 10 ~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~ 76 (237)
++|..|+++||+- +.-...+. +..-...+.+--+.++..+.++.+++.++.|-+|+.++-.+..
T Consensus 105 e~L~~l~~~Gvnr-islGvQS~--~d~vL~~l~R~~~~~~~~~ai~~~~~~~~~v~~dli~GlPgqt 168 (380)
T PRK09057 105 GRFRGYRAAGVNR-VSLGVQAL--NDADLRFLGRLHSVAEALAAIDLAREIFPRVSFDLIYARPGQT 168 (380)
T ss_pred HHHHHHHHcCCCE-EEEecccC--CHHHHHHcCCCCCHHHHHHHHHHHHHhCccEEEEeecCCCCCC
Confidence 6777777888765 33222111 1111112244446888899999999999999999998877665
No 282
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=43.01 E-value=19 Score=32.06 Aligned_cols=28 Identities=7% Similarity=0.062 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEeecc
Q psy9004 44 FGTPEQLKYLVDECHKAGLYVLLDVVHS 71 (237)
Q Consensus 44 ~Gt~~~l~~lv~~~H~~Gi~VilD~v~n 71 (237)
.|+..+++++++-||++|+.||+|-+-.
T Consensus 162 ~g~~~~~~~i~~~a~~~gi~vivD~a~~ 189 (363)
T TIGR01437 162 QKSMLSVEDAAQVAQEHNLPLIVDAAAE 189 (363)
T ss_pred cCCcCCHHHHHHHHHHcCCeEEEECCCC
Confidence 4667778999999999999999998753
No 283
>PRK08445 hypothetical protein; Provisional
Probab=42.90 E-value=84 Score=28.06 Aligned_cols=60 Identities=8% Similarity=-0.083 Sum_probs=42.4
Q ss_pred HHhhHHHHHcCccc-c-C-ccCCCCCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeecccc
Q psy9004 9 PEQLKYLVDECHKA-G-L-FGTPEQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHA 73 (237)
Q Consensus 9 ~~~L~yl~~lGv~~-p-i-~~~~~~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~ 73 (237)
.+.|..|++.|+.. | . .++- +..-...+ |.--|.++..+.++.||+.||++..=+.+.|.
T Consensus 144 ~e~L~~LkeAGl~~~~g~glE~~-----~d~v~~~~~pk~~t~~~~i~~i~~a~~~Gi~~~sg~i~G~~ 207 (348)
T PRK08445 144 KEVLERLQAKGLSSIPGAGAEIL-----SDRVRDIIAPKKLDSDRWLEVHRQAHLIGMKSTATMMFGTV 207 (348)
T ss_pred HHHHHHHHHcCCCCCCCCceeeC-----CHHHHHhhCCCCCCHHHHHHHHHHHHHcCCeeeeEEEecCC
Confidence 57888899999876 1 1 1111 00111234 55567788889999999999999999999986
No 284
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=42.67 E-value=35 Score=30.66 Aligned_cols=28 Identities=18% Similarity=0.389 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccC
Q psy9004 47 PEQLKYLVDECHKAGLYVLLDVVHSHAS 74 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~VilD~v~nh~~ 74 (237)
.++++++++.|+++|+.||+|-++.+..
T Consensus 188 ~~~~~~i~~~a~~~~~~ii~De~y~~~~ 215 (403)
T TIGR01265 188 RDHLQKIAEVARKLGIPIIADEIYGHMV 215 (403)
T ss_pred HHHHHHHHHHHHHCCCEEEEEccccccc
Confidence 5889999999999999999999877654
No 285
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=42.56 E-value=41 Score=29.83 Aligned_cols=63 Identities=16% Similarity=0.088 Sum_probs=41.2
Q ss_pred HHhhHHHHHcCccccCccCCCCCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeecccc
Q psy9004 9 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHA 73 (237)
Q Consensus 9 ~~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~ 73 (237)
.+.|..|++.|+.. +..+. .--+...-+..+ |.=-+.++..+.++.||+.||+|..-+.+.|.
T Consensus 141 ~e~l~~LkeAGl~~-i~~~~-~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~G~~ 204 (343)
T TIGR03551 141 EEALKRLKEAGLDS-MPGTA-AEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMYGHV 204 (343)
T ss_pred HHHHHHHHHhCccc-ccCcc-hhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEEEecC
Confidence 56788889999877 43111 000111112234 32226778899999999999999888888876
No 286
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=42.48 E-value=47 Score=30.79 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccCCC
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSHASKN 76 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~ 76 (237)
+.++..+.++.||+.||.|.++++++.-+..
T Consensus 321 ~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget 351 (472)
T TIGR03471 321 TVEIARRFTRDCHKLGIKVHGTFILGLPGET 351 (472)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEEEEeCCCCC
Confidence 5788999999999999999999998876654
No 287
>PLN02161 beta-amylase
Probab=42.40 E-value=82 Score=29.75 Aligned_cols=58 Identities=16% Similarity=0.092 Sum_probs=40.8
Q ss_pred ChHHhhHHHHHcCccc-------cCccCCCCCCCCcccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCC
Q psy9004 7 GTPEQLKYLVDECHKA-------GLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN 76 (237)
Q Consensus 7 Gl~~~L~yl~~lGv~~-------pi~~~~~~~gY~~~d~~~v~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~ 76 (237)
.|...|..||.+||.. +|.+..+...| ...-.++|++-+++.|+||.+=+.+.-++.+
T Consensus 118 al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~Y------------dWsgY~~l~~mvr~~GLKlq~vmSFHqCGGN 182 (531)
T PLN02161 118 ALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEF------------KWSLYEELFRLISEAGLKLHVALCFHSNMHL 182 (531)
T ss_pred HHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcC------------CcHHHHHHHHHHHHcCCeEEEEEEecccCCC
Confidence 5788999999999875 23332222223 2556788888888999999988888765443
No 288
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=42.16 E-value=19 Score=31.67 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=24.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEeec
Q psy9004 43 LFGTPEQLKYLVDECHKAGLYVLLDVVH 70 (237)
Q Consensus 43 ~~Gt~~~l~~lv~~~H~~Gi~VilD~v~ 70 (237)
.-|...+++++++.||++|+.||+|-+.
T Consensus 180 ~~G~~~~l~~i~~ia~~~~~~li~De~~ 207 (385)
T PRK05958 180 MDGDLAPLAELVALARRHGAWLLVDEAH 207 (385)
T ss_pred CCCCcCCHHHHHHHHHHhCCEEEEECcc
Confidence 4466778999999999999999999886
No 289
>PLN02721 threonine aldolase
Probab=42.11 E-value=31 Score=29.97 Aligned_cols=23 Identities=17% Similarity=0.166 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEEee
Q psy9004 47 PEQLKYLVDECHKAGLYVLLDVV 69 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~VilD~v 69 (237)
.++++++++.||++|+.||+|-+
T Consensus 157 ~~~l~~l~~l~~~~g~~livD~a 179 (353)
T PLN02721 157 VEYTDKVGELAKRHGLKLHIDGA 179 (353)
T ss_pred HHHHHHHHHHHHHcCCEEEEEch
Confidence 57799999999999999999975
No 290
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=42.04 E-value=31 Score=31.53 Aligned_cols=29 Identities=28% Similarity=0.389 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccCC
Q psy9004 47 PEQLKYLVDECHKAGLYVLLDVVHSHASK 75 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~VilD~v~nh~~~ 75 (237)
.++++++++.|+++|+-||.|-+..|...
T Consensus 209 ~~~l~~i~~~a~~~~i~ii~De~Y~~~~~ 237 (430)
T PLN00145 209 YEHLAKIAETARKLGILVIADEVYDHLTF 237 (430)
T ss_pred HHHHHHHHHHHHHcCCEEEEeccchhhcc
Confidence 68899999999999999999999877653
No 291
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=41.98 E-value=36 Score=30.36 Aligned_cols=30 Identities=30% Similarity=0.470 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccCC
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSHASK 75 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh~~~ 75 (237)
+.+.++++++-|+++|+-||+|-|....+.
T Consensus 194 ~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~ 223 (389)
T PRK01278 194 PDEFLKGLRQLCDENGLLLIFDEVQCGMGR 223 (389)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence 368999999999999999999999764433
No 292
>PRK06108 aspartate aminotransferase; Provisional
Probab=41.94 E-value=30 Score=30.57 Aligned_cols=28 Identities=21% Similarity=0.589 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccc
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSHA 73 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh~ 73 (237)
+.++++++++.|+++|+-||+|-+..+.
T Consensus 176 ~~~~~~~l~~~~~~~~~~li~De~y~~~ 203 (382)
T PRK06108 176 SRDDLRAILAHCRRHGLWIVADEVYERL 203 (382)
T ss_pred CHHHHHHHHHHHHHCCcEEEEehhhhhh
Confidence 5789999999999999999999875544
No 293
>PLN00175 aminotransferase family protein; Provisional
Probab=41.80 E-value=34 Score=31.03 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccC
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSHAS 74 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh~~ 74 (237)
+.++++++++.|+++|+-||.|-++.+..
T Consensus 205 s~~~l~~l~~~a~~~~~~ii~De~Y~~l~ 233 (413)
T PLN00175 205 TREELELIASLCKENDVLAFTDEVYDKLA 233 (413)
T ss_pred CHHHHHHHHHHHHHcCcEEEEecccCccc
Confidence 36899999999999999999999887764
No 294
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=41.76 E-value=35 Score=31.58 Aligned_cols=51 Identities=16% Similarity=0.173 Sum_probs=33.4
Q ss_pred HHhhHHHHHcCccccCccCCCCCCCC-ccccccc-CC--CCC-----HHHHHHHHHHHHHcCCEEEEEee
Q psy9004 9 PEQLKYLVDECHKAGLFGTPEQLKYL-VDECHKA-GL--FGT-----PEQLKYLVDECHKAGLYVLLDVV 69 (237)
Q Consensus 9 ~~~L~yl~~lGv~~pi~~~~~~~gY~-~~d~~~v-~~--~Gt-----~~~l~~lv~~~H~~Gi~VilD~v 69 (237)
.+-++-+++||+++ |- -.++..| |. -|. .+=.++||++|.++||+.|+-+-
T Consensus 61 ~eDi~l~~~lg~~~----------yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~ 120 (455)
T PF00232_consen 61 KEDIALMKELGVNA----------YRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLY 120 (455)
T ss_dssp HHHHHHHHHHT-SE----------EEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred hHHHHHHHhhccce----------eeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeee
Confidence 45678899999987 11 1234455 54 243 34579999999999999998753
No 295
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=41.70 E-value=24 Score=31.86 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=25.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVHS 71 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~n 71 (237)
...|+..+++++++.||++|+.||+|-+.-
T Consensus 157 NPtg~~~dl~~I~~la~~~gi~lIvD~a~a 186 (388)
T PRK07811 157 NPLLSITDIAALAELAHDAGAKVVVDNTFA 186 (388)
T ss_pred CCcceecCHHHHHHHHHHcCCEEEEECCCC
Confidence 345778999999999999999999997654
No 296
>PRK04302 triosephosphate isomerase; Provisional
Probab=41.62 E-value=50 Score=27.26 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEEE
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLD 67 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD 67 (237)
..+++.+++++|++.||.+|++
T Consensus 99 ~~~e~~~~v~~a~~~Gl~~I~~ 120 (223)
T PRK04302 99 TLADIEAVVERAKKLGLESVVC 120 (223)
T ss_pred CHHHHHHHHHHHHHCCCeEEEE
Confidence 4567899999999999999974
No 297
>PRK05764 aspartate aminotransferase; Provisional
Probab=41.33 E-value=31 Score=30.67 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccc
Q psy9004 47 PEQLKYLVDECHKAGLYVLLDVVHSH 72 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~VilD~v~nh 72 (237)
.++++++++.||++|+.||+|-+...
T Consensus 183 ~~~~~~l~~~a~~~~~~ii~De~y~~ 208 (393)
T PRK05764 183 PEELEAIADVAVEHDIWVLSDEIYEK 208 (393)
T ss_pred HHHHHHHHHHHHHCCcEEEEeccccc
Confidence 68999999999999999999976543
No 298
>PRK14012 cysteine desulfurase; Provisional
Probab=41.33 E-value=33 Score=30.87 Aligned_cols=27 Identities=15% Similarity=0.431 Sum_probs=24.5
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEeec
Q psy9004 44 FGTPEQLKYLVDECHKAGLYVLLDVVH 70 (237)
Q Consensus 44 ~Gt~~~l~~lv~~~H~~Gi~VilD~v~ 70 (237)
.|...+++++.+.||++|+.|++|-+-
T Consensus 157 tG~~~~~~~I~~la~~~g~~vivD~a~ 183 (404)
T PRK14012 157 IGVIQDIAAIGEICRERGIIFHVDAAQ 183 (404)
T ss_pred ccchhhHHHHHHHHHHcCCEEEEEcch
Confidence 588899999999999999999999763
No 299
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=41.24 E-value=21 Score=30.98 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEeec
Q psy9004 44 FGTPEQLKYLVDECHKAGLYVLLDVVH 70 (237)
Q Consensus 44 ~Gt~~~l~~lv~~~H~~Gi~VilD~v~ 70 (237)
-|...+++++++.||++|+.||+|-+.
T Consensus 159 ~G~~~~~~~i~~l~~~~~~~li~De~~ 185 (360)
T TIGR00858 159 DGDIAPLPQLVALAERYGAWLMVDDAH 185 (360)
T ss_pred CCCCcCHHHHHHHHHHcCcEEEEECcc
Confidence 355678999999999999999999884
No 300
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=41.22 E-value=37 Score=24.99 Aligned_cols=33 Identities=9% Similarity=-0.043 Sum_probs=28.1
Q ss_pred Cccccccc-CCCCCHHHHHHHHHHHHHcCCEEEE
Q psy9004 34 LVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLL 66 (237)
Q Consensus 34 ~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~Vil 66 (237)
...|..-+ +.-|...+..+.++.|+++|++||.
T Consensus 46 ~~~dl~I~iS~SG~t~~~~~~~~~a~~~g~~vi~ 79 (120)
T cd05710 46 TEKSVVILASHSGNTKETVAAAKFAKEKGATVIG 79 (120)
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHcCCeEEE
Confidence 34566666 8889999999999999999999886
No 301
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=41.08 E-value=49 Score=27.66 Aligned_cols=43 Identities=19% Similarity=0.271 Sum_probs=29.1
Q ss_pred hHHhhHHHHHcCccccCccCCCCCCCCcccccccCCCCCHHHHHHHHHHHHHcCCE
Q psy9004 8 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLY 63 (237)
Q Consensus 8 l~~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v~~~Gt~~~l~~lv~~~H~~Gi~ 63 (237)
+...+..+++||..+ .-||-..-+-..+|++.+.++|-++|+.
T Consensus 137 vetAiaml~dmG~~S-------------iKffPM~Gl~~leE~~avA~aca~~g~~ 179 (236)
T TIGR03581 137 IETAIAMLKDMGGSS-------------VKFFPMGGLKHLEEYAAVAKACAKHGFY 179 (236)
T ss_pred HHHHHHHHHHcCCCe-------------eeEeecCCcccHHHHHHHHHHHHHcCCc
Confidence 345667888888766 1122113334589999999999999885
No 302
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=41.08 E-value=33 Score=29.40 Aligned_cols=30 Identities=30% Similarity=0.422 Sum_probs=24.4
Q ss_pred CCCCC--HHHHHHHHHHHHHcCCEEEEEeecc
Q psy9004 42 GLFGT--PEQLKYLVDECHKAGLYVLLDVVHS 71 (237)
Q Consensus 42 ~~~Gt--~~~l~~lv~~~H~~Gi~VilD~v~n 71 (237)
.++|. ...|+++++.+|++|+.||+|+=+.
T Consensus 65 ~~~G~~gi~~l~~~~~~~~~~g~~VilD~K~~ 96 (261)
T TIGR02127 65 ERFGSEGFKALEEVIAHARSLGLPVLADVKRG 96 (261)
T ss_pred HhcCHHHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 55664 4678888899999999999998654
No 303
>PRK07777 aminotransferase; Validated
Probab=41.06 E-value=34 Score=30.47 Aligned_cols=29 Identities=24% Similarity=0.284 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccC
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSHAS 74 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh~~ 74 (237)
+.+++++|++.|+++|+.||+|-+..+..
T Consensus 177 ~~~~~~~l~~~~~~~~~~li~De~y~~~~ 205 (387)
T PRK07777 177 TAAELAAIAELAVEHDLLVITDEVYEHLV 205 (387)
T ss_pred CHHHHHHHHHHHHhcCcEEEEeccchhcc
Confidence 36899999999999999999998876544
No 304
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=41.05 E-value=30 Score=29.93 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=24.9
Q ss_pred CCCCC--HHHHHHHHHHHHHcCCEEEEEeecccc
Q psy9004 42 GLFGT--PEQLKYLVDECHKAGLYVLLDVVHSHA 73 (237)
Q Consensus 42 ~~~Gt--~~~l~~lv~~~H~~Gi~VilD~v~nh~ 73 (237)
.++|. .+.|+++|+.++++|+.||+|+=.+=.
T Consensus 65 ~~~G~~G~~~l~~~i~~l~~~g~~VilD~K~~DI 98 (278)
T PRK00125 65 EAHGAEGLAQLERTIAYLREAGVLVIADAKRGDI 98 (278)
T ss_pred HhcCchhhhHHHHHHHHHHHCCCcEEEEeecCCh
Confidence 45553 457888999999999999999865533
No 305
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=40.96 E-value=34 Score=25.39 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=20.7
Q ss_pred HHHHHHHHHHcCCEEEEEeeccccCC
Q psy9004 50 LKYLVDECHKAGLYVLLDVVHSHASK 75 (237)
Q Consensus 50 l~~lv~~~H~~Gi~VilD~v~nh~~~ 75 (237)
+++|++.+.+.||++++||=.+=.|.
T Consensus 2 ~e~f~~~l~~~~i~~lVDVR~~P~S~ 27 (122)
T PF04343_consen 2 IERFYDLLKKNGIRVLVDVRLWPRSR 27 (122)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCCCC
Confidence 57888899999999999986554443
No 306
>PRK07324 transaminase; Validated
Probab=40.95 E-value=53 Score=29.24 Aligned_cols=29 Identities=24% Similarity=0.248 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccC
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSHAS 74 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh~~ 74 (237)
+.++++++++.|+++|+.||+|-++....
T Consensus 171 ~~~~l~~i~~~a~~~~~~ii~De~y~~l~ 199 (373)
T PRK07324 171 DRAYLEEIVEIARSVDAYVLSDEVYRPLD 199 (373)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEccccccc
Confidence 57889999999999999999998865543
No 307
>PRK15447 putative protease; Provisional
Probab=40.82 E-value=33 Score=29.96 Aligned_cols=46 Identities=13% Similarity=0.029 Sum_probs=31.5
Q ss_pred hhHHHHHcCccccCccCCCCCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEE
Q psy9004 11 QLKYLVDECHKAGLFGTPEQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLL 66 (237)
Q Consensus 11 ~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~Vil 66 (237)
-...|.+.|+++ ||-.. ..+.. ..| +.+++++.|+.||++|.+|++
T Consensus 20 ~~~~~~~~gaDa-VY~g~--------~~~~~R~~f-~~~~l~e~v~~~~~~gkkvyv 66 (301)
T PRK15447 20 FYQRAADSPVDI-VYLGE--------TVCSKRREL-KVGDWLELAERLAAAGKEVVL 66 (301)
T ss_pred HHHHHHcCCCCE-EEECC--------ccCCCccCC-CHHHHHHHHHHHHHcCCEEEE
Confidence 345666777776 44332 11222 223 689999999999999999988
No 308
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=40.75 E-value=53 Score=29.50 Aligned_cols=65 Identities=11% Similarity=0.095 Sum_probs=42.8
Q ss_pred HHhhHHHHHcCccccCccCCCCCCCCcccccccCCCCCHHHHHHHHHHHHHcCCE-EEEEeeccccCCC
Q psy9004 9 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLY-VLLDVVHSHASKN 76 (237)
Q Consensus 9 ~~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v~~~Gt~~~l~~lv~~~H~~Gi~-VilD~v~nh~~~~ 76 (237)
.++|..++++|++. +.-+..+ .+..-+..+.+--+.++..+-++.|++.|+. |-+|+.++..+..
T Consensus 103 ~~~l~~l~~~G~nr-islGvQS--~~~~~L~~l~R~~~~~~~~~ai~~~~~~g~~~v~~Dli~GlPgqt 168 (370)
T PRK06294 103 ESYIRALALTGINR-ISIGVQT--FDDPLLKLLGRTHSSSKAIDAVQECSEHGFSNLSIDLIYGLPTQS 168 (370)
T ss_pred HHHHHHHHHCCCCE-EEEcccc--CCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 46788888888876 3322211 1111111223333678889999999999996 8999999887765
No 309
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=40.53 E-value=47 Score=27.70 Aligned_cols=40 Identities=10% Similarity=0.068 Sum_probs=31.5
Q ss_pred cccccCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCC
Q psy9004 37 ECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN 76 (237)
Q Consensus 37 d~~~v~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~ 76 (237)
|+..+.-....+.++..+++||+.|+.|++|+.=|....+
T Consensus 82 d~~tV~g~A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~ 121 (217)
T COG0269 82 DWVTVLGAADDATIKKAIKVAKEYGKEVQIDLIGVWDPEQ 121 (217)
T ss_pred CEEEEEecCCHHHHHHHHHHHHHcCCeEEEEeecCCCHHH
Confidence 3444444456789999999999999999999988876554
No 310
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=40.36 E-value=22 Score=31.88 Aligned_cols=30 Identities=23% Similarity=0.365 Sum_probs=26.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVHS 71 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~n 71 (237)
..+|...+++++++.|+++|+.||.|-+--
T Consensus 129 ~~~G~~~d~~~i~~~a~~~gi~vi~D~a~a 158 (379)
T PRK11658 129 HYAGAPADLDAIRAIGERYGIPVIEDAAHA 158 (379)
T ss_pred CCCCCcCCHHHHHHHHHHcCCeEEEECCCc
Confidence 457888899999999999999999998754
No 311
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=40.34 E-value=21 Score=33.14 Aligned_cols=24 Identities=25% Similarity=0.207 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEee
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVV 69 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v 69 (237)
..-+++++++.||++|+.||+|..
T Consensus 230 ~~~dl~~I~~la~~~g~~vivD~~ 253 (454)
T TIGR00474 230 EEVSIAELVALGREHGLPVMEDLG 253 (454)
T ss_pred CCCCHHHHHHHHHHcCCeEEEECC
Confidence 466899999999999999999964
No 312
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=40.01 E-value=64 Score=27.86 Aligned_cols=76 Identities=16% Similarity=0.123 Sum_probs=40.6
Q ss_pred HHHHHHHHHHcCCEEEEEe-eccccCCCccccc------cCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q psy9004 50 LKYLVDECHKAGLYVLLDV-VHSHASKNVLDGL------NEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSN 122 (237)
Q Consensus 50 l~~lv~~~H~~Gi~VilD~-v~nh~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~ 122 (237)
=+.++.+||+.|-+.++-+ -+-|++....... .+-+- .--|..... .++.-+-.-+.++++|.+-
T Consensus 119 G~~i~~~Ak~mGAktFVh~sfprhms~~~l~~Rr~~M~~~C~~l--Gi~fv~~ta------PDP~sd~gv~gaqqfIlE~ 190 (275)
T PF12683_consen 119 GYTIVWAAKKMGAKTFVHYSFPRHMSYELLARRRDIMEEACKDL--GIKFVEVTA------PDPTSDVGVAGAQQFILED 190 (275)
T ss_dssp HHHHHHHHHHTT-S-EEEEEETTGGGSHHHHHHHHHHHHHHHHC--T--EEEEEE---------SSTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCceEEEEechhhcchHHHHHHHHHHHHHHHHc--CCeEEEEeC------CCCCCCCCcHHHHHHHHHH
Confidence 3678888999999999888 4678886421000 00000 000000000 0011223357899999999
Q ss_pred HHHHHHhCCCc
Q psy9004 123 LRWYLEEYQFD 133 (237)
Q Consensus 123 ~~~w~~~~giD 133 (237)
+..|+++||=|
T Consensus 191 vp~~i~kYGkd 201 (275)
T PF12683_consen 191 VPKWIKKYGKD 201 (275)
T ss_dssp HHHHHHHH-S-
T ss_pred HHHHHHHhCCc
Confidence 99999999865
No 313
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=39.94 E-value=25 Score=31.59 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=25.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVHS 71 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~n 71 (237)
...|+..+++++++.||++|+.||+|-+.-
T Consensus 150 np~g~~~dl~~I~~la~~~gi~livD~a~~ 179 (380)
T TIGR01325 150 NPLGELVDIAALAELAHAIGALLVVDNVFA 179 (380)
T ss_pred CCCCeeeCHHHHHHHHHHcCCEEEEECCCc
Confidence 346777889999999999999999998754
No 314
>PRK08175 aminotransferase; Validated
Probab=39.88 E-value=33 Score=30.69 Aligned_cols=28 Identities=14% Similarity=0.165 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccc
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSHA 73 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh~ 73 (237)
+.++++++++.|+++|+.||.|-+..+.
T Consensus 182 ~~~~~~~i~~~a~~~~i~ii~De~y~~l 209 (395)
T PRK08175 182 ELEFFEKVVALAKRYDVLVVHDLAYADI 209 (395)
T ss_pred CHHHHHHHHHHHHHcCcEEEEecchHhh
Confidence 5899999999999999999999776543
No 315
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=39.72 E-value=41 Score=25.10 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEE
Q psy9004 45 GTPEQLKYLVDECHKAGLYVLLD 67 (237)
Q Consensus 45 Gt~~~l~~lv~~~H~~Gi~VilD 67 (237)
.+.+|++++++.|++++++|.+=
T Consensus 8 ~s~~ev~~~v~~a~~~~~~v~~~ 30 (139)
T PF01565_consen 8 KSVEEVQAIVKFANENGVPVRVR 30 (139)
T ss_dssp SSHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCcEEEE
Confidence 36899999999999999999763
No 316
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=39.68 E-value=26 Score=31.02 Aligned_cols=30 Identities=23% Similarity=0.275 Sum_probs=26.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVHS 71 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~n 71 (237)
+..|+.++++++++-|+++|+-||.|-+..
T Consensus 185 ~~~G~~~~~~~l~~la~~~~~~li~De~~~ 214 (397)
T PRK06939 185 SMDGDIAPLPEICDLADKYDALVMVDDSHA 214 (397)
T ss_pred CCCCCcCCHHHHHHHHHHhCCEEEEECccc
Confidence 445677899999999999999999999873
No 317
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=39.62 E-value=1.1e+02 Score=26.35 Aligned_cols=66 Identities=18% Similarity=0.265 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCCccccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLS 121 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~ 121 (237)
|..-+..+||+=|.++.+.|-.|++-+= +.+ ++ -.|+-.. -+.+..
T Consensus 79 P~~~~daeFr~~v~aLnaeGkavllsLG----GAd---------gh------------------IeL~~~q---E~~fv~ 124 (332)
T COG3469 79 PYNDPDAEFRAQVGALNAEGKAVLLSLG----GAD---------GH------------------IELKAGQ---EQAFVN 124 (332)
T ss_pred cCCCCHHHHHHHHHHhhccCcEEEEEcc----Ccc---------ce------------------EEeccch---HHHHHH
Confidence 4444568999999999999999988631 111 00 0122222 124556
Q ss_pred HHHHHHHhCCCcEEEecccC
Q psy9004 122 NLRWYLEEYQFDGFRFDGVT 141 (237)
Q Consensus 122 ~~~~w~~~~giDGfR~D~~~ 141 (237)
.+...+++||+||.-+|--.
T Consensus 125 eiirlietyGFDGLDiDLEq 144 (332)
T COG3469 125 EIIRLIETYGFDGLDIDLEQ 144 (332)
T ss_pred HHHHHHHHhCCCccccchhh
Confidence 66678889999999999654
No 318
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=39.57 E-value=35 Score=30.97 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccCCC
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSHASKN 76 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~ 76 (237)
+.++|+++++-|.++|+-||.|-+..+..-+
T Consensus 181 ~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd 211 (393)
T COG0436 181 SKEELKAIVELAREHDIIIISDEIYEELVYD 211 (393)
T ss_pred CHHHHHHHHHHHHHcCeEEEEehhhhhcccC
Confidence 4799999999999999999999998888765
No 319
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=39.43 E-value=56 Score=30.22 Aligned_cols=65 Identities=12% Similarity=0.095 Sum_probs=41.7
Q ss_pred HHhhHHHHHcCccccCccCCCCCCCCcccccccCCCCCHHHHHHHHHHHHHcC-CEEEEEeeccccCCC
Q psy9004 9 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG-LYVLLDVVHSHASKN 76 (237)
Q Consensus 9 ~~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v~~~Gt~~~l~~lv~~~H~~G-i~VilD~v~nh~~~~ 76 (237)
.++|..+++.|++- +.-...+ .+..-...+.+--+.++..+.++.+++.| +.|.+|++++.-+..
T Consensus 163 ~e~l~~l~~aGvnR-iSiGVQS--f~d~vLk~lgR~~~~~~~~~~i~~l~~~g~~~v~~DlI~GlPgqT 228 (449)
T PRK09058 163 DEKADAALDAGANR-FSIGVQS--FNTQVRRRAGRKDDREEVLARLEELVARDRAAVVCDLIFGLPGQT 228 (449)
T ss_pred HHHHHHHHHcCCCE-EEecCCc--CCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCcEEEEEEeeCCCCC
Confidence 35777788888776 3222110 01110111133346888999999999999 889999999877765
No 320
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=39.33 E-value=1e+02 Score=20.40 Aligned_cols=66 Identities=18% Similarity=0.054 Sum_probs=37.9
Q ss_pred CCCcCChHHhh-HHHHHcCccccCccCCCCCCCCcccccc-cCCCCCHHHHHH-HHHHHHHcCCEEEEE
Q psy9004 2 RTNGFGTPEQL-KYLVDECHKAGLFGTPEQLKYLVDECHK-AGLFGTPEQLKY-LVDECHKAGLYVLLD 67 (237)
Q Consensus 2 ~~~~~Gl~~~L-~yl~~lGv~~pi~~~~~~~gY~~~d~~~-v~~~Gt~~~l~~-lv~~~H~~Gi~VilD 67 (237)
+.|..||++++ .-|.+.|++--=.......++-..-+.. +|.-.+.++|++ |-+.|++.|+.+-++
T Consensus 6 G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~~~~~l~~~l~~l~~~l~l~i~~~ 74 (75)
T cd04870 6 GPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSADSEALLKDLLFKAHELGLQVRFE 74 (75)
T ss_pred cCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCCCHHHHHHHHHHHHHHcCceEEEe
Confidence 67888999998 6788889764111111111221111111 244356777776 555677889988764
No 321
>COG1441 MenC O-succinylbenzoate synthase [Coenzyme metabolism]
Probab=39.30 E-value=32 Score=29.10 Aligned_cols=29 Identities=21% Similarity=0.398 Sum_probs=23.9
Q ss_pred CCC-CCHHHHHHHHHHHHHcCCEEEEEeec
Q psy9004 42 GLF-GTPEQLKYLVDECHKAGLYVLLDVVH 70 (237)
Q Consensus 42 ~~~-Gt~~~l~~lv~~~H~~Gi~VilD~v~ 70 (237)
|.+ |+.+-.+++|++||..|+.-++.-.+
T Consensus 237 PTL~GSl~r~~eli~qAh~lGl~AVISSSi 266 (321)
T COG1441 237 PTLTGSLQRVRELVQQAHALGLTAVISSSI 266 (321)
T ss_pred ccchhhHHHHHHHHHHHHhcCceeEeechh
Confidence 444 88999999999999999998776433
No 322
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=39.29 E-value=36 Score=31.75 Aligned_cols=23 Identities=22% Similarity=0.509 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHcCCEEEEEee
Q psy9004 47 PEQLKYLVDECHKAGLYVLLDVV 69 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~VilD~v 69 (237)
+++++++.+-|+++||+|++|-.
T Consensus 197 ~~~m~~I~elA~~~Gl~Vi~DaA 219 (460)
T PRK13237 197 MANMRAVRELCDKHGIKVFFDAT 219 (460)
T ss_pred HHhHHHHHHHHHHcCCEEEEECc
Confidence 78999999999999999999964
No 323
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=39.26 E-value=24 Score=30.70 Aligned_cols=29 Identities=24% Similarity=0.527 Sum_probs=25.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVH 70 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~ 70 (237)
..+|...+++++++.|+++|+.||+|-+-
T Consensus 114 ~~~G~~~~~~~i~~l~~~~~i~li~D~a~ 142 (352)
T cd00616 114 HLYGNPADMDAIMAIAKRHGLPVIEDAAQ 142 (352)
T ss_pred CCCCCcCCHHHHHHHHHHcCCeEEEECCC
Confidence 45788888999999999999999999873
No 324
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=39.14 E-value=37 Score=30.15 Aligned_cols=28 Identities=29% Similarity=0.463 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCcEEEecc
Q psy9004 108 FNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDG 139 (237)
Q Consensus 108 ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~ 139 (237)
.|.++|+|++.-++.+ +++|||||-++.
T Consensus 52 Ydl~~p~v~~~Q~~lA----~~~GI~gF~~~~ 79 (345)
T PF14307_consen 52 YDLRDPEVMEKQAELA----KEYGIDGFCFYH 79 (345)
T ss_pred ccCCCHHHHHHHHHHH----HHhCCCEEEEEe
Confidence 5778899887766654 579999999984
No 325
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=39.12 E-value=35 Score=27.07 Aligned_cols=20 Identities=25% Similarity=0.210 Sum_probs=17.4
Q ss_pred HHHHHHHHHHcCCEEEEEee
Q psy9004 50 LKYLVDECHKAGLYVLLDVV 69 (237)
Q Consensus 50 l~~lv~~~H~~Gi~VilD~v 69 (237)
-+++|++||++|++|++.-|
T Consensus 138 ~~~~v~~~~~~g~~v~~wtv 157 (179)
T cd08555 138 DTELIASANKLGLLSRIWTV 157 (179)
T ss_pred CHHHHHHHHHCCCEEEEEee
Confidence 47899999999999999844
No 326
>PRK09082 methionine aminotransferase; Validated
Probab=39.11 E-value=30 Score=30.86 Aligned_cols=29 Identities=24% Similarity=0.318 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccC
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSHAS 74 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh~~ 74 (237)
+.++++++++-|+++|+.||.|-+..+..
T Consensus 181 ~~~~~~~i~~~a~~~~i~li~De~y~~~~ 209 (386)
T PRK09082 181 SAADMRALWQLIAGTDIYVLSDEVYEHIV 209 (386)
T ss_pred CHHHHHHHHHHHHHCCEEEEEehhhhhhc
Confidence 46999999999999999999999876544
No 327
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=39.10 E-value=27 Score=30.66 Aligned_cols=33 Identities=6% Similarity=0.147 Sum_probs=27.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEee--ccccC
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVV--HSHAS 74 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v--~nh~~ 74 (237)
..-|...+++++++.||++|+.|++|-+ +.+..
T Consensus 149 n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~~ 183 (353)
T TIGR03235 149 NETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKIT 183 (353)
T ss_pred CCceeccCHHHHHHHHHHcCCEEEEEchhhcCCcc
Confidence 4457788899999999999999999987 55443
No 328
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=39.01 E-value=46 Score=25.38 Aligned_cols=56 Identities=18% Similarity=0.340 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccCCCccccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy9004 47 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWY 126 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~~p~v~~~i~~~~~~w 126 (237)
-+||+.|++.|++.|+.|++=+.|=+ ..|+.... -+.+.|+...+-++.-
T Consensus 35 y~Dl~l~L~~~k~~g~~~lfVi~PvN----------------g~wydytG--------------~~~~~r~~~y~kI~~~ 84 (130)
T PF04914_consen 35 YDDLQLLLDVCKELGIDVLFVIQPVN----------------GKWYDYTG--------------LSKEMRQEYYKKIKYQ 84 (130)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE--------------------HHHHHHTT----------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCceEEEecCCc----------------HHHHHHhC--------------CCHHHHHHHHHHHHHH
Confidence 36999999999999999987554421 23332211 1468888899999998
Q ss_pred HHhCCC
Q psy9004 127 LEEYQF 132 (237)
Q Consensus 127 ~~~~gi 132 (237)
+++.|+
T Consensus 85 ~~~~gf 90 (130)
T PF04914_consen 85 LKSQGF 90 (130)
T ss_dssp HHTTT-
T ss_pred HHHCCC
Confidence 888887
No 329
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=38.99 E-value=36 Score=30.00 Aligned_cols=28 Identities=14% Similarity=0.336 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccc
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSHA 73 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh~ 73 (237)
+.++++++++.|+++|+.||+|-++-..
T Consensus 160 ~~~~~~~i~~~a~~~~~~ii~De~y~~~ 187 (356)
T PRK08056 160 ERQLLQAIAERCKSLNIALILDEAFIDF 187 (356)
T ss_pred CHHHHHHHHHHHHhcCCEEEEecchhcc
Confidence 4688999999999999999999986443
No 330
>PRK07683 aminotransferase A; Validated
Probab=38.89 E-value=47 Score=29.68 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccc
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSHA 73 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh~ 73 (237)
+.++++++++.||++|+-||.|-++-..
T Consensus 179 s~~~~~~l~~~~~~~~~~ii~De~y~~~ 206 (387)
T PRK07683 179 SKEELQDIADVLKDKNIFVLSDEIYSEL 206 (387)
T ss_pred CHHHHHHHHHHHHHcCeEEEEecccccc
Confidence 4789999999999999999999886644
No 331
>PRK11059 regulatory protein CsrD; Provisional
Probab=38.75 E-value=33 Score=33.10 Aligned_cols=69 Identities=19% Similarity=0.088 Sum_probs=43.7
Q ss_pred CcCChHHhhHHHHHcCccccCc--c----CCCCCCCCccccccc-CCC--------CCHHHHHHHHHHHHHcCCEEEEEe
Q psy9004 4 NGFGTPEQLKYLVDECHKAGLF--G----TPEQLKYLVDECHKA-GLF--------GTPEQLKYLVDECHKAGLYVLLDV 68 (237)
Q Consensus 4 ~~~Gl~~~L~yl~~lGv~~pi~--~----~~~~~gY~~~d~~~v-~~~--------Gt~~~l~~lv~~~H~~Gi~VilD~ 68 (237)
+...+...+..|+++|+...+= . +..+-..-+.||-++ +.| .+..-++.+++.||+.|++||..-
T Consensus 531 ~~~~~~~~l~~L~~~G~~iaiddfG~g~~s~~~L~~l~~d~iKid~s~v~~i~~~~~~~~~v~sli~~a~~~~i~viAeg 610 (640)
T PRK11059 531 HISRLRPVLRMLRGLGCRLAVDQAGLTVVSTSYIKELNVELIKLHPSLVRNIHKRTENQLFVRSLVGACAGTETQVFATG 610 (640)
T ss_pred CHHHHHHHHHHHHHCCCEEEEECCCCCcccHHHHHhCCCCEEEECHHHHhhhhcCchhHHHHHHHHHHHHHCCCeEEEEE
Confidence 3445677888999999754221 1 111112234555555 443 223458999999999999999997
Q ss_pred eccc
Q psy9004 69 VHSH 72 (237)
Q Consensus 69 v~nh 72 (237)
|=+.
T Consensus 611 VEt~ 614 (640)
T PRK11059 611 VESR 614 (640)
T ss_pred eCCH
Confidence 7553
No 332
>PRK06852 aldolase; Validated
Probab=38.74 E-value=38 Score=29.78 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeec
Q psy9004 47 PEQLKYLVDECHKAGLYVLLDVVH 70 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~VilD~v~ 70 (237)
.+++.+++++||+.||-||+.+.+
T Consensus 153 l~~l~~v~~ea~~~GlPll~~~yp 176 (304)
T PRK06852 153 LSEAAQIIYEAHKHGLIAVLWIYP 176 (304)
T ss_pred HHHHHHHHHHHHHhCCcEEEEeec
Confidence 467889999999999999996443
No 333
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=38.70 E-value=30 Score=30.75 Aligned_cols=30 Identities=20% Similarity=0.443 Sum_probs=26.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVHS 71 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~n 71 (237)
...|+..+++++++.||+.|..||+|-+.-
T Consensus 157 ~~~G~~~~l~~i~~la~~~~~~livDea~~ 186 (370)
T TIGR02539 157 GEYGNLPDAGKVAKVCREKGVPLLLNCAYT 186 (370)
T ss_pred CCCccccCHHHHHHHHHHcCCeEEEECccc
Confidence 557889999999999999999999997643
No 334
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=38.68 E-value=38 Score=31.47 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=21.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEe
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDV 68 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~ 68 (237)
+.++++++.+-|+++|+.||.|-
T Consensus 196 s~~~l~~I~~ia~~~gi~li~Da 218 (460)
T PRK13238 196 SMANLRAVYEIAKKYGIPVVIDA 218 (460)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEC
Confidence 58999999999999999999996
No 335
>PRK06225 aspartate aminotransferase; Provisional
Probab=38.65 E-value=37 Score=30.15 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecc
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHS 71 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~n 71 (237)
+.++++++++.|+++|+.||.|-+..
T Consensus 175 ~~~~~~~i~~~a~~~~~~ii~De~y~ 200 (380)
T PRK06225 175 TEEEIKEFAEIARDNDAFLLHDCTYR 200 (380)
T ss_pred CHHHHHHHHHHHHHCCcEEEEehhHH
Confidence 37899999999999999999998753
No 336
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Proteins belonging to this subgroup include CP-like protein X1 (CPX1), CP-like protein X2 (CPX2), and aortic CP-like protein (ACLP) and its isoform adipocyte enhancer binding protein-1 (AEBP1). AEBP1 is a truncated form of ACLP, which may arise from alternative splicing of the gene. These proteins are inactive towards standard CP substrates because they lack one or more critical active site and substrate-binding residues that are necessary for activity. They may function as binding proteins rather than as active CPs or display catalytic activity toward other substrates. Pro
Probab=38.53 E-value=38 Score=31.02 Aligned_cols=45 Identities=24% Similarity=0.487 Sum_probs=36.7
Q ss_pred cCccCCCCCCCCccccccc-CCCCC----------------HHHHHHHHHHHHHcCCE-EEEEe
Q psy9004 23 GLFGTPEQLKYLVDECHKA-GLFGT----------------PEQLKYLVDECHKAGLY-VLLDV 68 (237)
Q Consensus 23 pi~~~~~~~gY~~~d~~~v-~~~Gt----------------~~~l~~lv~~~H~~Gi~-VilD~ 68 (237)
|+..+.++|-|--++-+.+ ..+|. .+.|.++++++| +||| ++.|-
T Consensus 276 ~~~GgmqD~nY~~~ncfEiTlElsc~K~P~~~~L~~~W~~N~~all~~~~~vh-~GikG~V~d~ 338 (405)
T cd03869 276 TVAGSMNDFSYLHTNCFELSVYLGCDKFPHESELPEEWENNKESLLVFMEQVH-RGIKGVVRDK 338 (405)
T ss_pred cCCCcccchhhhccCeEEEEEeccCCCCCChHHHHHHHHHHHHHHHHHHHHHh-cCceEEEECC
Confidence 5667778899988888988 88875 478899999999 5999 67774
No 337
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=38.48 E-value=1.7e+02 Score=25.65 Aligned_cols=29 Identities=14% Similarity=0.077 Sum_probs=22.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVH 70 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~ 70 (237)
..=|+-+...+-|+.++++|++|.+-.++
T Consensus 143 ~~~g~f~~~l~~I~~l~~~G~~v~v~~tv 171 (318)
T TIGR03470 143 CREGVFDRAVEAIREAKARGFRVTTNTTL 171 (318)
T ss_pred cCCCcHHHHHHHHHHHHHCCCcEEEEEEE
Confidence 33467788888899999999998876654
No 338
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=38.44 E-value=92 Score=26.13 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccc
Q psy9004 47 PEQLKYLVDECHKAGLYVLLDVVHSHA 73 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~VilD~v~nh~ 73 (237)
.+++..+++.|+++||+.++=+.++..
T Consensus 115 ~ee~~~~~~~~~~~g~~~i~~i~P~T~ 141 (242)
T cd04724 115 PEEAEEFREAAKEYGLDLIFLVAPTTP 141 (242)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 578999999999999999987776654
No 339
>PTZ00376 aspartate aminotransferase; Provisional
Probab=38.31 E-value=51 Score=29.66 Aligned_cols=30 Identities=23% Similarity=0.264 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccCC
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSHASK 75 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh~~~ 75 (237)
+.++++++++.|+++|+-||.|-++.+...
T Consensus 194 s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~ 223 (404)
T PTZ00376 194 TEEQWKEIADVMKRKNLIPFFDMAYQGFAS 223 (404)
T ss_pred CHHHHHHHHHHHHhCCcEEEEehhhcCccC
Confidence 589999999999999999999999876654
No 340
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=38.30 E-value=38 Score=30.35 Aligned_cols=29 Identities=10% Similarity=0.211 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccC
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSHAS 74 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh~~ 74 (237)
+.++++++++.|+++|+.||.|-+..+..
T Consensus 186 ~~~~~~~l~~~a~~~~~~ii~De~y~~~~ 214 (401)
T TIGR01264 186 SRQHLEEILAVAERQCLPIIADEIYGDMV 214 (401)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEhhhhhhc
Confidence 36899999999999999999998877654
No 341
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=38.19 E-value=57 Score=28.35 Aligned_cols=58 Identities=16% Similarity=0.143 Sum_probs=41.1
Q ss_pred CCCcCChHHhhHHHHHcCccc---cCccCCCCCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEE
Q psy9004 2 RTNGFGTPEQLKYLVDECHKA---GLFGTPEQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLL 66 (237)
Q Consensus 2 ~~~~~Gl~~~L~yl~~lGv~~---pi~~~~~~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~Vil 66 (237)
|-+..-|++.++.|++.|++. +-|.- |+--... .+|=++++|+.+-+.+.++|..-+.
T Consensus 224 GEt~~Ev~e~m~DLr~~gvdilTiGQYlq-------PS~~HlpV~ryv~PeeF~~~~~~a~~~GF~~v~ 285 (306)
T COG0320 224 GETDEEVIEVMDDLRSAGVDILTIGQYLQ-------PSRKHLPVQRYVTPEEFDELEEVAEEMGFLHVA 285 (306)
T ss_pred CCcHHHHHHHHHHHHHcCCCEEEeccccC-------CccccCCceeccCHHHHHHHHHHHHHccchhhc
Confidence 334456788889999999865 33333 3333344 7777999999999999999975443
No 342
>PLN02656 tyrosine transaminase
Probab=38.14 E-value=36 Score=30.77 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccC
Q psy9004 47 PEQLKYLVDECHKAGLYVLLDVVHSHAS 74 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~VilD~v~nh~~ 74 (237)
.++++++++.|+++|+-||.|-+..+..
T Consensus 188 ~~~~~~i~~~a~~~~~~ii~De~y~~~~ 215 (409)
T PLN02656 188 YQHLKKIAETAEKLKILVIADEVYGHLA 215 (409)
T ss_pred HHHHHHHHHHHHHcCCEEEEehhhhhcc
Confidence 5899999999999999999998887654
No 343
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=38.05 E-value=23 Score=25.57 Aligned_cols=31 Identities=10% Similarity=0.064 Sum_probs=25.2
Q ss_pred ccccc--CCCCCHHHHHHHHHHHHHcCCEEEEE
Q psy9004 37 ECHKA--GLFGTPEQLKYLVDECHKAGLYVLLD 67 (237)
Q Consensus 37 d~~~v--~~~Gt~~~l~~lv~~~H~~Gi~VilD 67 (237)
|+..+ .+.|+..+.+++++.|.++||.++.-
T Consensus 20 d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h 52 (111)
T PF13378_consen 20 DIVQIDPTRCGGITEALRIAALAEAHGIPVMPH 52 (111)
T ss_dssp SEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEB
T ss_pred CEEEeCchhcCCHHHHHHHHHHHHHhCCCEEec
Confidence 44555 67799999999999999999998764
No 344
>PLN02187 rooty/superroot1
Probab=38.04 E-value=40 Score=31.20 Aligned_cols=29 Identities=24% Similarity=0.394 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccC
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSHAS 74 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh~~ 74 (237)
+.++++++++.|+++|+-||.|-++.+..
T Consensus 222 s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~ 250 (462)
T PLN02187 222 SHDHLKKVAETARKLGIMVISDEVYDRTI 250 (462)
T ss_pred CHHHHHHHHHHHHHCCCEEEEeccccccc
Confidence 37899999999999999999999887754
No 345
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=37.99 E-value=35 Score=29.23 Aligned_cols=19 Identities=16% Similarity=0.109 Sum_probs=16.9
Q ss_pred HHHHHHHHHc-CCEEEEEee
Q psy9004 51 KYLVDECHKA-GLYVLLDVV 69 (237)
Q Consensus 51 ~~lv~~~H~~-Gi~VilD~v 69 (237)
+++|++||++ ||+|...-|
T Consensus 219 ~~~V~~~h~~~gl~V~~WTV 238 (263)
T cd08580 219 PAAVDCFRRNSKVKIVLFGI 238 (263)
T ss_pred HHHHHHHHhcCCcEEEEEEe
Confidence 5789999999 999999865
No 346
>PRK05957 aspartate aminotransferase; Provisional
Probab=37.93 E-value=39 Score=30.25 Aligned_cols=29 Identities=17% Similarity=0.291 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccC
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSHAS 74 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh~~ 74 (237)
+.++++++++.||++|+-||.|-++.+..
T Consensus 178 ~~~~~~~i~~~a~~~~~~li~De~y~~~~ 206 (389)
T PRK05957 178 PEALLRAVNQICAEHGIYHISDEAYEYFT 206 (389)
T ss_pred CHHHHHHHHHHHHHcCcEEEEeccchhcc
Confidence 47899999999999999999998876554
No 347
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=37.88 E-value=45 Score=26.73 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEeeccccCC
Q psy9004 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASK 75 (237)
Q Consensus 44 ~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~ 75 (237)
..+.+.+.++++.||++|+++++++.=-++..
T Consensus 86 ~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~ 117 (202)
T cd04726 86 AAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPE 117 (202)
T ss_pred eCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHH
Confidence 33456789999999999999999965444433
No 348
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=37.88 E-value=29 Score=30.83 Aligned_cols=29 Identities=24% Similarity=0.307 Sum_probs=25.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVH 70 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~ 70 (237)
...|...+++++++.||++|+.||+|-+.
T Consensus 181 ~~tG~~~~l~~i~~la~~~~~~li~De~~ 209 (393)
T TIGR01822 181 SMDGVIAPLDEICDLADKYDALVMVDECH 209 (393)
T ss_pred cCCCCcCCHHHHHHHHHHcCCEEEEECCc
Confidence 44577788999999999999999999884
No 349
>PRK06348 aspartate aminotransferase; Provisional
Probab=37.76 E-value=41 Score=30.00 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccC
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSHAS 74 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh~~ 74 (237)
+.++++++++.|+++|+-||.|-+..+..
T Consensus 180 s~~~~~~l~~~a~~~~~~ii~De~y~~~~ 208 (384)
T PRK06348 180 SKETLEEIAKIAIEYDLFIISDEVYDGFS 208 (384)
T ss_pred CHHHHHHHHHHHHHCCeEEEEecccccce
Confidence 47899999999999999999998877654
No 350
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=37.66 E-value=41 Score=30.99 Aligned_cols=31 Identities=23% Similarity=0.378 Sum_probs=27.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeeccc
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVHSH 72 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh 72 (237)
+.+|.+.+++++++-|+++|+.||.|-+--+
T Consensus 167 ~~~G~p~dl~~I~~la~~~gi~vIeDaa~a~ 197 (438)
T PRK15407 167 HTLGNPFDLAAVKAFCDKHNLWLIEDNCDAL 197 (438)
T ss_pred CCCCChhhHHHHHHHHHHCCCEEEEECccch
Confidence 4678999999999999999999999976443
No 351
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=37.48 E-value=27 Score=30.75 Aligned_cols=28 Identities=14% Similarity=0.287 Sum_probs=24.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEee
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVV 69 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v 69 (237)
..-|...+++++++.||++|+.|++|.+
T Consensus 140 ~~tG~~~~i~~I~~l~~~~g~~livD~~ 167 (363)
T TIGR02326 140 TTTGILNPIEAVAKLAHRHGKVTIVDAM 167 (363)
T ss_pred CCccccCcHHHHHHHHHHcCCEEEEEcc
Confidence 4467788899999999999999999975
No 352
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=37.46 E-value=21 Score=31.31 Aligned_cols=28 Identities=14% Similarity=0.326 Sum_probs=25.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEeec
Q psy9004 43 LFGTPEQLKYLVDECHKAGLYVLLDVVH 70 (237)
Q Consensus 43 ~~Gt~~~l~~lv~~~H~~Gi~VilD~v~ 70 (237)
..|+..+++++.+.||++|+.|++|-+.
T Consensus 163 ~tG~~~~l~~I~~l~~~~g~~livD~a~ 190 (371)
T PRK13520 163 ELGQVDPIPELSKIALENGIFLHVDAAF 190 (371)
T ss_pred CCcccCCHHHHHHHHHHcCCCEEEEecc
Confidence 4688888999999999999999999864
No 353
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=37.42 E-value=30 Score=31.84 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEeec
Q psy9004 45 GTPEQLKYLVDECHKAGLYVLLDVVH 70 (237)
Q Consensus 45 Gt~~~l~~lv~~~H~~Gi~VilD~v~ 70 (237)
|...+++++.+.||++|+.||+|-+.
T Consensus 163 g~v~Di~~I~~la~~~gi~livD~t~ 188 (433)
T PRK08134 163 LEVLDIPTVAAIAHEAGVPLLVDSTF 188 (433)
T ss_pred CcccCHHHHHHHHHHcCCEEEEECCC
Confidence 34488999999999999999999764
No 354
>PRK07582 cystathionine gamma-lyase; Validated
Probab=37.35 E-value=27 Score=31.16 Aligned_cols=27 Identities=22% Similarity=0.165 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEeec
Q psy9004 44 FGTPEQLKYLVDECHKAGLYVLLDVVH 70 (237)
Q Consensus 44 ~Gt~~~l~~lv~~~H~~Gi~VilD~v~ 70 (237)
-|...+++++++.||++|+.||+|-+.
T Consensus 145 tg~v~di~~I~~~a~~~g~~lvVD~t~ 171 (366)
T PRK07582 145 GLDVCDLAALAAAAHAAGALLVVDNTT 171 (366)
T ss_pred CCCccCHHHHHHHHHHcCCEEEEECCC
Confidence 356778999999999999999999875
No 355
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=37.35 E-value=30 Score=31.14 Aligned_cols=28 Identities=11% Similarity=0.338 Sum_probs=25.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEee
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVV 69 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v 69 (237)
...|...+++++.+.||++|+.|++|-+
T Consensus 153 n~tG~~~~~~~I~~l~~~~g~~livD~a 180 (402)
T TIGR02006 153 NEIGVIQDIAAIGEICRERKVFFHVDAA 180 (402)
T ss_pred cCceecccHHHHHHHHHHcCCEEEEEcc
Confidence 4468888999999999999999999987
No 356
>PRK13561 putative diguanylate cyclase; Provisional
Probab=37.27 E-value=23 Score=34.12 Aligned_cols=67 Identities=18% Similarity=0.212 Sum_probs=43.5
Q ss_pred cCChHHhhHHHHHcCccccC--ccCC-CCCC------CCccccccc-CCC-----CCHHHHHHHHHHHHHcCCEEEEEee
Q psy9004 5 GFGTPEQLKYLVDECHKAGL--FGTP-EQLK------YLVDECHKA-GLF-----GTPEQLKYLVDECHKAGLYVLLDVV 69 (237)
Q Consensus 5 ~~Gl~~~L~yl~~lGv~~pi--~~~~-~~~g------Y~~~d~~~v-~~~-----Gt~~~l~~lv~~~H~~Gi~VilD~v 69 (237)
...+.+.+..|+++|+.-.+ |.+. ++.. .-+.|+-.+ ..| .+..-++.+++-||..||+||+.-|
T Consensus 533 ~~~~~~~~~~l~~~G~~i~lddfG~g~ssl~~L~~l~~l~~d~lKiD~s~i~~i~~~~~~v~~i~~~a~~l~i~viAegV 612 (651)
T PRK13561 533 PHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSLPIDVLKIDKMFVDGLPEDDSMVAAIIMLAQSLNLQVIAEGV 612 (651)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCcccHHHHhhcCCCCCcEEEECHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEecC
Confidence 34567788999999976422 2211 1111 134566665 443 3456789999999999999999866
Q ss_pred cc
Q psy9004 70 HS 71 (237)
Q Consensus 70 ~n 71 (237)
=+
T Consensus 613 E~ 614 (651)
T PRK13561 613 ET 614 (651)
T ss_pred CC
Confidence 33
No 357
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=37.06 E-value=27 Score=30.25 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=26.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeeccc
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVHSH 72 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh 72 (237)
...|..++++++++-||++|+.|++|-+...
T Consensus 159 ~~tG~~~~~~~i~~~~~~~~~~l~vD~a~~~ 189 (345)
T cd06450 159 TDTGAIDPLEEIADLAEKYDLWLHVDAAYGG 189 (345)
T ss_pred CCCCCCCCHHHHHHHHHHhCCeEEEechhhH
Confidence 3467788999999999999999999987543
No 358
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=37.01 E-value=2.6e+02 Score=23.76 Aligned_cols=23 Identities=30% Similarity=0.193 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhCCCcEEEe-cccC
Q psy9004 118 FLLSNLRWYLEEYQFDGFRF-DGVT 141 (237)
Q Consensus 118 ~i~~~~~~w~~~~giDGfR~-D~~~ 141 (237)
++.+.++...+ .|+|.+++ |++.
T Consensus 139 ~~~~~~~~~~~-~g~~~i~l~DT~G 162 (266)
T cd07944 139 ELLELLELVNE-IKPDVFYIVDSFG 162 (266)
T ss_pred HHHHHHHHHHh-CCCCEEEEecCCC
Confidence 56666666665 79999987 4443
No 359
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=36.90 E-value=25 Score=30.92 Aligned_cols=28 Identities=18% Similarity=0.383 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEeec
Q psy9004 43 LFGTPEQLKYLVDECHKAGLYVLLDVVH 70 (237)
Q Consensus 43 ~~Gt~~~l~~lv~~~H~~Gi~VilD~v~ 70 (237)
..|+..+++++++.||++|+.|++|-..
T Consensus 165 ~tG~~~~~~~i~~l~~~~~~~livD~a~ 192 (373)
T TIGR03812 165 ELGQIDDIEELSKIALENGIYLHVDAAF 192 (373)
T ss_pred CCCccCCHHHHHHHHHHcCCeEEEEcCc
Confidence 4577888999999999999999999864
No 360
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=36.89 E-value=38 Score=29.83 Aligned_cols=29 Identities=17% Similarity=0.168 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccC
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSHAS 74 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh~~ 74 (237)
+.++++++++.|+++|+-||.|-+..+..
T Consensus 160 ~~~~~~~i~~~a~~~~~~ii~De~y~~~~ 188 (357)
T TIGR03539 160 SVDELRAIVAWARERGAVVASDECYLELG 188 (357)
T ss_pred CHHHHHHHHHHHHHcCeEEEEecchhhhc
Confidence 47899999999999999999998875443
No 361
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=36.85 E-value=31 Score=31.38 Aligned_cols=30 Identities=17% Similarity=0.359 Sum_probs=25.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVHS 71 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~n 71 (237)
...|...+++++++.||++|+.||+|-+.-
T Consensus 156 NPtG~v~dl~~I~~la~~~gi~vIvD~a~a 185 (405)
T PRK08776 156 NPLLRITDLRFVIEAAHKVGALTVVDNTFL 185 (405)
T ss_pred CCCCccCCHHHHHHHHHHcCCEEEEECCCc
Confidence 335677889999999999999999998863
No 362
>PLN02368 alanine transaminase
Probab=36.78 E-value=45 Score=30.39 Aligned_cols=29 Identities=21% Similarity=0.281 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccC
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSHAS 74 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh~~ 74 (237)
+.++++++++-|+++++-||.|-+..+..
T Consensus 228 s~e~l~~l~~~a~~~~~~II~DE~Y~~l~ 256 (407)
T PLN02368 228 SEANLREILKFCYQERLVLLGDEVYQQNI 256 (407)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEccccccc
Confidence 47999999999999999999998887765
No 363
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=36.70 E-value=29 Score=30.83 Aligned_cols=33 Identities=21% Similarity=0.449 Sum_probs=22.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccC
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 74 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~ 74 (237)
.-+|.+.++.++.+-|+++||.||-|-.=-|-+
T Consensus 121 h~~G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~ 153 (363)
T PF01041_consen 121 HLFGNPADMDAIRAIARKHGIPLIEDAAQAFGA 153 (363)
T ss_dssp -GGGB---HHHHHHHHHHTT-EEEEE-TTTTT-
T ss_pred cCCCCcccHHHHHHHHHHcCCcEEEccccccCc
Confidence 667888999999999999999999997655533
No 364
>PRK15029 arginine decarboxylase; Provisional
Probab=36.67 E-value=27 Score=34.70 Aligned_cols=27 Identities=19% Similarity=-0.042 Sum_probs=24.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEe
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDV 68 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~ 68 (237)
..+|...+++.+++.||++|+.|++|-
T Consensus 322 TY~Gv~~di~~I~~~~h~~~~~llvDE 348 (755)
T PRK15029 322 TYDGVCYNAKEAQDLLEKTSDRLHFDE 348 (755)
T ss_pred CCcceeeCHHHHHHHHHhcCCeEEEEC
Confidence 445888899999999999999999994
No 365
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=36.60 E-value=29 Score=31.00 Aligned_cols=28 Identities=21% Similarity=0.490 Sum_probs=25.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEee
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVV 69 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v 69 (237)
+.+|+..+++++++-||++|+.||+|-+
T Consensus 170 ~~~~~~~~~~~I~~l~~~~~~~li~D~a 197 (402)
T cd00378 170 SAYPRPIDFKRFREIADEVGAYLLVDMA 197 (402)
T ss_pred cccCCCcCHHHHHHHHHhcCCEEEEEcc
Confidence 5677777899999999999999999986
No 366
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=36.55 E-value=66 Score=27.12 Aligned_cols=36 Identities=25% Similarity=0.258 Sum_probs=31.7
Q ss_pred cc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCC
Q psy9004 40 KA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN 76 (237)
Q Consensus 40 ~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~ 76 (237)
+| | +-+.+.|+++.+.++++||..++=++|++..+.
T Consensus 8 DVsP-~~~~~~l~~i~d~l~~~~ipf~v~vIP~~~d~~ 44 (243)
T PF10096_consen 8 DVSP-FSDLEKLKEIADYLYKYGIPFSVAVIPVYVDPN 44 (243)
T ss_pred CCCC-CCCHHHHHHHHHHHHHCCCCEEEEEEecccCCC
Confidence 45 4 567899999999999999999999999998776
No 367
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=36.52 E-value=28 Score=31.16 Aligned_cols=29 Identities=21% Similarity=0.272 Sum_probs=25.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVH 70 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~ 70 (237)
..-|+..+++++++.||++|+.|++|.+-
T Consensus 168 n~tG~~~~~~~i~~~~~~~~~~~ivD~a~ 196 (398)
T TIGR03392 168 NVTGGCPDLARAITLAHQYGAVVVVDGAQ 196 (398)
T ss_pred ccccccCCHHHHHHHHHHcCCEEEEEhhh
Confidence 45577888999999999999999999875
No 368
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=36.40 E-value=31 Score=30.74 Aligned_cols=28 Identities=29% Similarity=0.457 Sum_probs=24.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEee
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVV 69 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v 69 (237)
..-|...+++++++.||++|+.||+|-+
T Consensus 167 n~tG~~~~~~~i~~~~~~~~~~~ivD~a 194 (397)
T TIGR01976 167 NTLGSIVDLAAITELVHAAGALVVVDAV 194 (397)
T ss_pred CCCCccCCHHHHHHHHHHcCCEEEEehh
Confidence 5567778899999999999999999986
No 369
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=36.26 E-value=43 Score=31.10 Aligned_cols=23 Identities=17% Similarity=0.421 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEEee
Q psy9004 47 PEQLKYLVDECHKAGLYVLLDVV 69 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~VilD~v 69 (237)
+++++++.+-|+++||+|++|-.
T Consensus 190 ~~~l~~I~elA~~~Gl~vi~DaA 212 (450)
T TIGR02618 190 MANMREVRELCEAHGIKVFYDAT 212 (450)
T ss_pred HHHHHHHHHHHHHcCCEEEEEcc
Confidence 58999999999999999999953
No 370
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=36.20 E-value=32 Score=31.23 Aligned_cols=31 Identities=23% Similarity=0.275 Sum_probs=26.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeeccc
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVHSH 72 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh 72 (237)
...|..-+++++++.||++|+.||+|-+.-+
T Consensus 166 Nptg~v~dl~~I~~la~~~g~~vivD~a~a~ 196 (403)
T PRK07810 166 NPMQSLVDIAAVSELAHAAGAKVVLDNVFAT 196 (403)
T ss_pred CCCCeecCHHHHHHHHHHcCCEEEEECCCCc
Confidence 4567778899999999999999999987543
No 371
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=36.20 E-value=2.6e+02 Score=23.50 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHhCCCcEEEec
Q psy9004 117 RFLLSNLRWYLEEYQFDGFRFD 138 (237)
Q Consensus 117 ~~i~~~~~~w~~~~giDGfR~D 138 (237)
+++.+.++...+ .|+|.+++-
T Consensus 139 ~~~~~~~~~~~~-~G~~~i~l~ 159 (259)
T cd07939 139 DFLIEFAEVAQE-AGADRLRFA 159 (259)
T ss_pred HHHHHHHHHHHH-CCCCEEEeC
Confidence 356777776666 799998873
No 372
>PRK10060 RNase II stability modulator; Provisional
Probab=36.20 E-value=17 Score=35.31 Aligned_cols=67 Identities=18% Similarity=0.146 Sum_probs=42.7
Q ss_pred cCChHHhhHHHHHcCccccC--ccCC----CCCCCCccccccc-CCC--------CCHHHHHHHHHHHHHcCCEEEEEee
Q psy9004 5 GFGTPEQLKYLVDECHKAGL--FGTP----EQLKYLVDECHKA-GLF--------GTPEQLKYLVDECHKAGLYVLLDVV 69 (237)
Q Consensus 5 ~~Gl~~~L~yl~~lGv~~pi--~~~~----~~~gY~~~d~~~v-~~~--------Gt~~~l~~lv~~~H~~Gi~VilD~v 69 (237)
...+.+.+..|+++|+...+ |.+. .+-..-+.|+-.+ ..| ....-++.+++-||+.||+||+.-|
T Consensus 540 ~~~~~~~l~~L~~~G~~ialDdfGtg~ssl~~L~~l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~viAeGV 619 (663)
T PRK10060 540 EELALSVIQQFSQLGAQVHLDDFGTGYSSLSQLARFPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGV 619 (663)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHhCCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEEEecC
Confidence 34566778899999975422 1111 1111124555555 433 2356789999999999999999976
Q ss_pred cc
Q psy9004 70 HS 71 (237)
Q Consensus 70 ~n 71 (237)
=+
T Consensus 620 Et 621 (663)
T PRK10060 620 ET 621 (663)
T ss_pred CC
Confidence 43
No 373
>PRK09148 aminotransferase; Validated
Probab=36.12 E-value=41 Score=30.31 Aligned_cols=29 Identities=21% Similarity=0.165 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccC
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSHAS 74 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh~~ 74 (237)
+.++++++++.||++|+-||.|-+..+..
T Consensus 183 s~~~l~~l~~~a~~~~~~ii~De~Y~~~~ 211 (405)
T PRK09148 183 DLDFYKDVVAFAKKHDIIILSDLAYSEIY 211 (405)
T ss_pred CHHHHHHHHHHHHHcCeEEEEeccchhhh
Confidence 47899999999999999999998876543
No 374
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=35.99 E-value=33 Score=30.99 Aligned_cols=29 Identities=17% Similarity=0.272 Sum_probs=25.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVH 70 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~ 70 (237)
...|...+++++++.||++|+.||+|-++
T Consensus 157 NptG~v~dl~~I~~la~~~gi~livD~t~ 185 (390)
T PRK08133 157 NPLTELADIAALAEIAHAAGALLVVDNCF 185 (390)
T ss_pred CCCCCcCCHHHHHHHHHHcCCEEEEECCC
Confidence 44677778999999999999999999875
No 375
>PRK07503 methionine gamma-lyase; Provisional
Probab=35.90 E-value=32 Score=31.23 Aligned_cols=30 Identities=17% Similarity=0.098 Sum_probs=25.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVHS 71 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~n 71 (237)
...|...+++++++.||++|+.||+|-+.-
T Consensus 161 NPtG~~~di~~I~~la~~~gi~lIvD~a~a 190 (403)
T PRK07503 161 NPNMRLVDIAAVAEIAHGAGAKVVVDNTYC 190 (403)
T ss_pred CCCCeeeCHHHHHHHHHHcCCEEEEECCCc
Confidence 345777789999999999999999998764
No 376
>PRK05942 aspartate aminotransferase; Provisional
Probab=35.89 E-value=41 Score=30.08 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccc
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSHA 73 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh~ 73 (237)
+.++++++++.|+++|+.||.|-+....
T Consensus 188 s~~~~~~i~~~a~~~~~~iI~De~y~~~ 215 (394)
T PRK05942 188 PREFFEEIVAFARKYEIMLVHDLCYAEL 215 (394)
T ss_pred CHHHHHHHHHHHHHcCeEEEEeccchhh
Confidence 3688999999999999999999886433
No 377
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=35.79 E-value=38 Score=27.95 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=15.9
Q ss_pred HHHHHHHHHcCCEEEEEe
Q psy9004 51 KYLVDECHKAGLYVLLDV 68 (237)
Q Consensus 51 ~~lv~~~H~~Gi~VilD~ 68 (237)
.++|+.+|++|++|++.-
T Consensus 191 ~~~v~~~~~~G~~v~~wT 208 (233)
T cd08582 191 PAFIKALRDAGLKLNVWT 208 (233)
T ss_pred HHHHHHHHHCCCEEEEEe
Confidence 588999999999999863
No 378
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=35.60 E-value=84 Score=26.98 Aligned_cols=55 Identities=22% Similarity=0.169 Sum_probs=35.3
Q ss_pred ChHHhhHHHHHcCccccCccCCCCCCCCccccccc-CCCC-CHHHHHHHHHHHHHcCCEEEEEe
Q psy9004 7 GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA-GLFG-TPEQLKYLVDECHKAGLYVLLDV 68 (237)
Q Consensus 7 Gl~~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v-~~~G-t~~~l~~lv~~~H~~Gi~VilD~ 68 (237)
-+.+....||++|+.. ++.+. |.|. +.+ .--| ..+.++.|.+.|++.||.++.++
T Consensus 42 ~~~~~A~~lk~~g~~~-~r~~~----~kpR--Ts~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~ 98 (266)
T PRK13398 42 QMVKVAEKLKELGVHM-LRGGA----FKPR--TSPYSFQGLGEEGLKILKEVGDKYNLPVVTEV 98 (266)
T ss_pred HHHHHHHHHHHcCCCE-EEEee----ecCC--CCCCccCCcHHHHHHHHHHHHHHcCCCEEEee
Confidence 3556677888989764 33222 1111 111 1111 38899999999999999999875
No 379
>PRK10534 L-threonine aldolase; Provisional
Probab=35.57 E-value=44 Score=28.92 Aligned_cols=23 Identities=22% Similarity=0.112 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEEee
Q psy9004 47 PEQLKYLVDECHKAGLYVLLDVV 69 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~VilD~v 69 (237)
.++++++++.|+++|+.|++|-.
T Consensus 146 ~~~l~~i~~~~~~~~~~lvvDEA 168 (333)
T PRK10534 146 REYLKQAWEFTRERNLALHVDGA 168 (333)
T ss_pred HHHHHHHHHHHHHcCCeEEeeHH
Confidence 68899999999999999999953
No 380
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=35.56 E-value=4.5e+02 Score=25.96 Aligned_cols=123 Identities=10% Similarity=-0.003 Sum_probs=68.9
Q ss_pred hHHhhHHHHHcCccc---cCccCCCCCCCCccccccc-CCCCCHH-HHHHHHHHHH-HcCCEEEEEeeccccCC-Ccccc
Q psy9004 8 TPEQLKYLVDECHKA---GLFGTPEQLKYLVDECHKA-GLFGTPE-QLKYLVDECH-KAGLYVLLDVVHSHASK-NVLDG 80 (237)
Q Consensus 8 l~~~L~yl~~lGv~~---pi~~~~~~~gY~~~d~~~v-~~~Gt~~-~l~~lv~~~H-~~Gi~VilD~v~nh~~~-~~~~~ 80 (237)
|-.-|+.|+++|+++ -.|.-|...|-. .-.|-+ .++-=.+ -|-+.+=+++ +.|++|+.++.+=-..- .....
T Consensus 336 l~~l~~ri~~~~~~~VyLqafadp~gdg~~-~~lYFpnr~lPmraDlfnrvawql~tR~~v~vyAWmpvl~~~l~~~~~~ 414 (672)
T PRK14581 336 LDKLVQRISDLRVTHVFLQAFSDPKGDGNI-RQVYFPNRWIPMRQDLFNRVVWQLASRPDVEVYAWMPVLAFDMDPSLPR 414 (672)
T ss_pred HHHHHHHHHhcCCCEEEEEeeeCCCCCCce-eeEEecCCcccHHHhhhhHHHHHHHhhhCceEEEeeehhhccCCcccch
Confidence 445678999999998 223344344422 222223 4444344 4556646666 45999999986542211 10000
Q ss_pred ccCCCCCCCCccCCCC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecc
Q psy9004 81 LNEFDGTQACFFHDGP-RGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDG 139 (237)
Q Consensus 81 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~ln~~~p~v~~~i~~~~~~w~~~~giDGfR~D~ 139 (237)
.. .+ .... ......-+-.-|..-+|++|+.|.++...+...-.|||+-|.-
T Consensus 415 ~~-------~~-~~~~~~~~~~~~~y~rlspf~~~~~~~i~~iy~DLa~~~~~~GilfhD 466 (672)
T PRK14581 415 IT-------RI-DPKTGKTSIDPDQYRRLSPFNPEVRQRIIDIYRDMAYSAPIDGIIYHD 466 (672)
T ss_pred hh-------hc-ccccCccccCCCCccccCCCCHHHHHHHHHHHHHHHhcCCCCeEEecc
Confidence 00 00 0000 0001111223477789999999999999999855899998854
No 381
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=35.49 E-value=29 Score=30.91 Aligned_cols=29 Identities=21% Similarity=0.377 Sum_probs=25.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVH 70 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~ 70 (237)
..+|...+++++++-|+++|+.||.|-+-
T Consensus 129 ~~~G~~~~~~~i~~l~~~~~~~lI~D~a~ 157 (380)
T TIGR03588 129 DFAGKSVDMQAIAALAKKHGLKIIEDASH 157 (380)
T ss_pred CCCCccCCHHHHHHHHHHcCCEEEEECCC
Confidence 44688889999999999999999999764
No 382
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=35.46 E-value=37 Score=28.35 Aligned_cols=33 Identities=12% Similarity=0.124 Sum_probs=27.6
Q ss_pred ccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEee
Q psy9004 37 ECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVV 69 (237)
Q Consensus 37 d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v 69 (237)
|...+ +-+|+.+..+.+++.++++++.||+|-.
T Consensus 79 d~v~ig~gl~~~~~~~~i~~~~~~~~~pvVlDa~ 112 (254)
T cd01171 79 DAVVIGPGLGRDEEAAEILEKALAKDKPLVLDAD 112 (254)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEcH
Confidence 44556 7788888899999999999999999954
No 383
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=35.37 E-value=29 Score=30.76 Aligned_cols=28 Identities=18% Similarity=0.131 Sum_probs=24.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEee
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVV 69 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v 69 (237)
...|...+++++.+.||++|+.|++|-+
T Consensus 147 n~tG~~~~~~~I~~l~~~~g~~vivD~~ 174 (379)
T TIGR03402 147 NETGTIFPIEEIGEIAKERGALFHTDAV 174 (379)
T ss_pred CCeeecccHHHHHHHHHHcCCEEEEECc
Confidence 3457778899999999999999999975
No 384
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=35.36 E-value=35 Score=31.62 Aligned_cols=29 Identities=10% Similarity=0.287 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccC
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSHAS 74 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh~~ 74 (237)
..++++++.+-|+++||.|++|-.....+
T Consensus 220 ~~ddL~eIa~la~k~gI~lIvDaAyg~~~ 248 (444)
T TIGR03531 220 SPDDIEEIAKICANYDIPHIVNNAYGLQS 248 (444)
T ss_pred chhCHHHHHHHHHHcCCEEEEECcCcCcC
Confidence 68999999999999999999998877533
No 385
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=35.29 E-value=45 Score=29.61 Aligned_cols=28 Identities=25% Similarity=0.169 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccc
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSHA 73 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh~ 73 (237)
+.++++++++.|+++|+-||+|-+....
T Consensus 184 ~~~~~~~l~~~~~~~~~~ii~De~y~~~ 211 (385)
T PRK09276 184 DLEFFEEVVDFAKKYDIIVCHDAAYSEI 211 (385)
T ss_pred CHHHHHHHHHHHHHCCcEEEEecchhhe
Confidence 3789999999999999999999887654
No 386
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=35.21 E-value=66 Score=30.13 Aligned_cols=32 Identities=6% Similarity=0.031 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEeeccccCCC
Q psy9004 45 GTPEQLKYLVDECHKAGLYVLLDVVHSHASKN 76 (237)
Q Consensus 45 Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~ 76 (237)
.+.++..+.|+.|++.||.+.++++++.-+..
T Consensus 320 ~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et 351 (497)
T TIGR02026 320 TTTSTNKEAIRLLRQHNILSEAQFITGFENET 351 (497)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEEEEECCCCC
Confidence 47888999999999999999999998876654
No 387
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=35.18 E-value=36 Score=30.75 Aligned_cols=30 Identities=13% Similarity=0.213 Sum_probs=25.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVHS 71 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~n 71 (237)
...|...+++++++.||++|+.||+|-..-
T Consensus 155 Np~G~v~dl~~I~~la~~~gi~livD~a~a 184 (391)
T TIGR01328 155 NPTMKLIDMERVCRDAHSQGVKVIVDNTFA 184 (391)
T ss_pred CCCCcccCHHHHHHHHHHcCCEEEEECCCc
Confidence 345777789999999999999999997753
No 388
>PRK04311 selenocysteine synthase; Provisional
Probab=35.15 E-value=28 Score=32.40 Aligned_cols=25 Identities=24% Similarity=0.183 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEee
Q psy9004 45 GTPEQLKYLVDECHKAGLYVLLDVV 69 (237)
Q Consensus 45 Gt~~~l~~lv~~~H~~Gi~VilD~v 69 (237)
+..-+++++++.||++|+.||+|..
T Consensus 234 ~~~~dl~eI~~lak~~gi~vivD~g 258 (464)
T PRK04311 234 TKEVSLAELAALGKEHGLPVVYDLG 258 (464)
T ss_pred CCcCCHHHHHHHHHHcCCeEEEECC
Confidence 3456899999999999999999983
No 389
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=35.13 E-value=36 Score=30.40 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=27.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccC
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 74 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~ 74 (237)
..+|+..++.++++-||++|+.||.|-+-.+-+
T Consensus 127 ~~~G~~~~~~~i~~la~~~~i~vIeD~a~a~g~ 159 (375)
T PRK11706 127 HYAGVACEMDTIMALAKKHNLFVVEDAAQGVMS 159 (375)
T ss_pred CCCCCccCHHHHHHHHHHcCCEEEEECcccccc
Confidence 446888899999999999999999998754443
No 390
>KOG0053|consensus
Probab=35.11 E-value=34 Score=31.35 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=24.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVHS 71 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~n 71 (237)
..+.+.-|++++++-||++|+-|++|=.+-
T Consensus 173 NPll~v~DI~~l~~la~~~g~~vvVDnTf~ 202 (409)
T KOG0053|consen 173 NPLLKVPDIEKLARLAHKYGFLVVVDNTFG 202 (409)
T ss_pred CCccccccHHHHHHHHhhCCCEEEEeCCcC
Confidence 445567789999999999999999995544
No 391
>PRK15108 biotin synthase; Provisional
Probab=35.05 E-value=93 Score=27.72 Aligned_cols=63 Identities=10% Similarity=-0.043 Sum_probs=39.9
Q ss_pred HHhhHHHHHcCccccCccCCCCCCCCcccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCC
Q psy9004 9 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN 76 (237)
Q Consensus 9 ~~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~ 76 (237)
.+.+..|++.|++. +..+-. . .+.-|-.+-.-++.++..+.++.||+.||+|-.=+.+.| +..
T Consensus 136 ~e~l~~LkeAGld~-~n~~le--T-~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~Gl-gEt 198 (345)
T PRK15108 136 ESQAQRLANAGLDY-YNHNLD--T-SPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGL-GET 198 (345)
T ss_pred HHHHHHHHHcCCCE-Eeeccc--c-ChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeC-CCC
Confidence 45667777777663 111000 0 122222441234789999999999999999999999988 443
No 392
>PRK07671 cystathionine beta-lyase; Provisional
Probab=34.98 E-value=37 Score=30.53 Aligned_cols=31 Identities=13% Similarity=0.161 Sum_probs=26.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeeccc
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVHSH 72 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh 72 (237)
...|...+++++++.||++|+.||+|-++..
T Consensus 145 NPtg~~~dl~~I~~la~~~g~~lvvD~a~~~ 175 (377)
T PRK07671 145 NPLLKITDIKKISTIAKEKGLLTIVDNTFMT 175 (377)
T ss_pred CCCCcccCHHHHHHHHHHcCCEEEEECCCCc
Confidence 3457778999999999999999999988643
No 393
>PRK09265 aminotransferase AlaT; Validated
Probab=34.73 E-value=47 Score=29.86 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccc
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSHA 73 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh~ 73 (237)
+.++++++++.|+++|+-||.|-+..+.
T Consensus 186 ~~~~~~~i~~~a~~~~~~ii~De~y~~~ 213 (404)
T PRK09265 186 SKELLEEIVEIARQHNLIIFADEIYDKI 213 (404)
T ss_pred CHHHHHHHHHHHHHCCCEEEEehhhhhc
Confidence 3688999999999999999999776544
No 394
>PRK08227 autoinducer 2 aldolase; Validated
Probab=34.72 E-value=46 Score=28.60 Aligned_cols=20 Identities=25% Similarity=0.306 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHcCCEEEE
Q psy9004 47 PEQLKYLVDECHKAGLYVLL 66 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~Vil 66 (237)
.+++.+++++||+.||-||+
T Consensus 126 l~~l~~v~~ea~~~G~Plla 145 (264)
T PRK08227 126 IKNIIQLVDAGLRYGMPVMA 145 (264)
T ss_pred HHHHHHHHHHHHHhCCcEEE
Confidence 36788899999999999998
No 395
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=34.71 E-value=43 Score=29.71 Aligned_cols=28 Identities=21% Similarity=0.120 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccc
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSHA 73 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh~ 73 (237)
+.++++++++.|+++|+.||.|-+....
T Consensus 182 ~~~~~~~i~~~a~~~~~~ii~De~y~~l 209 (383)
T TIGR03540 182 PLKFFKELVEFAKEYNIIVCHDNAYSEI 209 (383)
T ss_pred CHHHHHHHHHHHHHcCEEEEEecchhhh
Confidence 3789999999999999999999887644
No 396
>PRK08064 cystathionine beta-lyase; Provisional
Probab=34.66 E-value=38 Score=30.56 Aligned_cols=29 Identities=10% Similarity=0.122 Sum_probs=25.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVH 70 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~ 70 (237)
...|...+++++++.||++|+.||+|-..
T Consensus 149 NptG~~~dl~~I~~la~~~g~~vvvD~a~ 177 (390)
T PRK08064 149 NPLLKVTDIRGVVKLAKAIGCLTFVDNTF 177 (390)
T ss_pred CCCcEeccHHHHHHHHHHcCCEEEEECCC
Confidence 44677889999999999999999999763
No 397
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=34.48 E-value=71 Score=28.94 Aligned_cols=64 Identities=9% Similarity=-0.005 Sum_probs=42.5
Q ss_pred HhhHHHHHcCccccCccCCCCCCCCcccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCCC
Q psy9004 10 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN 76 (237)
Q Consensus 10 ~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~ 76 (237)
++|..|+++|++- +.-...+ .++.-+..+.+--+.++..+.++.+++.+..|-+|++++..+..
T Consensus 123 e~L~~l~~~Gvnr-isiGvQS--~~~~~L~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt 186 (394)
T PRK08898 123 EKFAQFRASGVNR-LSIGIQS--FNDAHLKALGRIHDGAEARAAIEIAAKHFDNFNLDLMYALPGQT 186 (394)
T ss_pred HHHHHHHHcCCCe-EEEeccc--CCHHHHHHhCCCCCHHHHHHHHHHHHHhCCceEEEEEcCCCCCC
Confidence 6788888888876 3322211 11111111233446788888999999999999999999987765
No 398
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=34.33 E-value=86 Score=27.90 Aligned_cols=61 Identities=16% Similarity=0.128 Sum_probs=39.5
Q ss_pred HHhhHHHHHcCccccCccC-CCCCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccc
Q psy9004 9 PEQLKYLVDECHKAGLFGT-PEQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSH 72 (237)
Q Consensus 9 ~~~L~yl~~lGv~~pi~~~-~~~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh 72 (237)
.+.|..|++.|++. +... ... ++..-+..+ +.-.+.++..+.++.||+.||++-.=+.+.|
T Consensus 150 ~e~l~~LkeAGld~-~~~~g~E~--~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~sg~i~Gl 212 (351)
T TIGR03700 150 EEVLDELKEAGLDS-MPGGGAEI--FAEEVRQQICPEKISAERWLEIHRTAHELGLKTNATMLYGH 212 (351)
T ss_pred HHHHHHHHHcCCCc-CCCCcccc--cCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEeeC
Confidence 34577788888776 2211 000 111112344 5434577888999999999999999999998
No 399
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=34.27 E-value=73 Score=28.44 Aligned_cols=34 Identities=15% Similarity=0.140 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCE-EEEEeeccccCCC
Q psy9004 43 LFGTPEQLKYLVDECHKAGLY-VLLDVVHSHASKN 76 (237)
Q Consensus 43 ~~Gt~~~l~~lv~~~H~~Gi~-VilD~v~nh~~~~ 76 (237)
+-.+.++..+-++.+++.|+. |-+|+.++..+..
T Consensus 130 R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPgqt 164 (374)
T PRK05799 130 RIHTFEEFLENYKLARKLGFNNINVDLMFGLPNQT 164 (374)
T ss_pred CCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCC
Confidence 334788999999999999997 7799998877665
No 400
>PRK05839 hypothetical protein; Provisional
Probab=34.27 E-value=42 Score=29.83 Aligned_cols=29 Identities=21% Similarity=0.101 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccC
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSHAS 74 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh~~ 74 (237)
+.++++++++.|+++|+-||.|-++.+..
T Consensus 173 s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~ 201 (374)
T PRK05839 173 SLEELIEWVKLALKHDFILINDECYSEIY 201 (374)
T ss_pred CHHHHHHHHHHHHHcCCEEEeccchhhcc
Confidence 37999999999999999999999887754
No 401
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=34.24 E-value=32 Score=30.70 Aligned_cols=29 Identities=24% Similarity=0.420 Sum_probs=24.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVH 70 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~ 70 (237)
..-|...+++++++.||++|+.|++|.+.
T Consensus 170 ~~tG~~~~~~~i~~~~~~~~~~~ivD~a~ 198 (403)
T TIGR01979 170 NVLGTVNPVEEIAKLAHQVGAKVLVDGAQ 198 (403)
T ss_pred ccccccCCHHHHHHHHHHcCCEEEEEchh
Confidence 44577788999999999999999999763
No 402
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=34.20 E-value=56 Score=25.27 Aligned_cols=33 Identities=6% Similarity=0.143 Sum_probs=28.2
Q ss_pred Cccccccc-CCCCCHHHHHHHHHHHHHcCCEEEE
Q psy9004 34 LVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLL 66 (237)
Q Consensus 34 ~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~Vil 66 (237)
...|..-+ +.-|...+..+.++.|+++|+++|.
T Consensus 78 ~~~D~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~ 111 (154)
T TIGR00441 78 QKGDVLLGISTSGNSKNVLKAIEAAKDKGMKTIT 111 (154)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEE
Confidence 44566667 8889999999999999999999985
No 403
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=34.19 E-value=53 Score=28.83 Aligned_cols=27 Identities=19% Similarity=0.044 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccc
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSH 72 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh 72 (237)
|.+++.+.++.+|+.||+|.+++.++.
T Consensus 153 t~~~~~~ai~~~~~~Gi~v~~~~i~G~ 179 (313)
T TIGR01210 153 TFEDFIRAAELARKYGAGVKAYLLFKP 179 (313)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecC
Confidence 789999999999999999999999874
No 404
>PRK12928 lipoyl synthase; Provisional
Probab=34.14 E-value=65 Score=27.99 Aligned_cols=31 Identities=3% Similarity=-0.010 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHHHcC--CEEEEEeeccccCCC
Q psy9004 45 GTPEQLKYLVDECHKAG--LYVLLDVVHSHASKN 76 (237)
Q Consensus 45 Gt~~~l~~lv~~~H~~G--i~VilD~v~nh~~~~ 76 (237)
.+.++..++++.||+.| |.+-.++.+.| +..
T Consensus 185 ~t~e~~le~l~~ak~~gp~i~~~s~iIvG~-GET 217 (290)
T PRK12928 185 ADYQRSLDLLARAKELAPDIPTKSGLMLGL-GET 217 (290)
T ss_pred CCHHHHHHHHHHHHHhCCCceecccEEEeC-CCC
Confidence 67899999999999999 99999999998 654
No 405
>PRK06207 aspartate aminotransferase; Provisional
Probab=34.05 E-value=53 Score=29.62 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccC
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSHAS 74 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh~~ 74 (237)
+.++++++++.|+++|+-||.|-+.....
T Consensus 196 s~e~l~~l~~~a~~~~~~iI~De~Y~~~~ 224 (405)
T PRK06207 196 SAEEIAQIAALARRYGATVIVDQLYSRLL 224 (405)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccccccc
Confidence 36899999999999999999998877653
No 406
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=34.03 E-value=34 Score=30.09 Aligned_cols=27 Identities=33% Similarity=0.481 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEee
Q psy9004 43 LFGTPEQLKYLVDECHKAGLYVLLDVV 69 (237)
Q Consensus 43 ~~Gt~~~l~~lv~~~H~~Gi~VilD~v 69 (237)
..|...+++++++.||++|+.|++|.+
T Consensus 151 ~tG~~~~~~~i~~~~~~~~~~li~D~a 177 (373)
T cd06453 151 VLGTINPVKEIGEIAHEAGVPVLVDGA 177 (373)
T ss_pred ccCCcCCHHHHHHHHHHcCCEEEEEhh
Confidence 357778899999999999999999975
No 407
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=33.75 E-value=38 Score=30.39 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeecccc
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHA 73 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~ 73 (237)
...|...+++++++-|+++|+.||.|-+-.+.
T Consensus 127 ~~~G~~~d~~~I~~la~~~~i~vIeDaa~~~g 158 (376)
T TIGR02379 127 HYAGVACDMDTIMALANKHQLFVIEDAAQGVM 158 (376)
T ss_pred CCCCCccCHHHHHHHHHHCCCEEEEECccccC
Confidence 44688889999999999999999999875443
No 408
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=33.74 E-value=44 Score=27.35 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=16.0
Q ss_pred HHHHHHHHHcCCEEEEEe
Q psy9004 51 KYLVDECHKAGLYVLLDV 68 (237)
Q Consensus 51 ~~lv~~~H~~Gi~VilD~ 68 (237)
.++|+.||++|++|++.-
T Consensus 189 ~~~v~~~~~~g~~v~~wT 206 (229)
T cd08562 189 EEQVKALKDAGYKLLVYT 206 (229)
T ss_pred HHHHHHHHHCCCEEEEEe
Confidence 479999999999999883
No 409
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=33.69 E-value=38 Score=30.53 Aligned_cols=30 Identities=13% Similarity=0.142 Sum_probs=25.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVHS 71 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~n 71 (237)
...|...+++++++.||++|+.||+|-+.-
T Consensus 145 Nptg~~~di~~I~~la~~~gi~vivD~t~a 174 (380)
T PRK06176 145 NPLLKITDLAQCASVAKDHGLLTIVDNTFA 174 (380)
T ss_pred CCCceecCHHHHHHHHHHcCCEEEEECCcc
Confidence 345667789999999999999999997754
No 410
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=33.69 E-value=1.9e+02 Score=27.36 Aligned_cols=32 Identities=16% Similarity=0.233 Sum_probs=28.6
Q ss_pred CC-HHHHHHHHHHHHHcCCEEEEEeecc--ccCCC
Q psy9004 45 GT-PEQLKYLVDECHKAGLYVLLDVVHS--HASKN 76 (237)
Q Consensus 45 Gt-~~~l~~lv~~~H~~Gi~VilD~v~n--h~~~~ 76 (237)
|+ ..-+..+++.|...+|||++=++.+ ||+..
T Consensus 63 ~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~ 97 (587)
T COG3934 63 GSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGT 97 (587)
T ss_pred cccHHHHHHHhhhcccCcceEEEEEeecccccCcc
Confidence 45 6778999999999999999999999 99985
No 411
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=33.54 E-value=61 Score=26.13 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEe
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDV 68 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~ 68 (237)
+...+.++++.|+++||++++++
T Consensus 87 ~~~~~~~~i~~~~~~g~~~~~~~ 109 (206)
T TIGR03128 87 DDATIKGAVKAAKKHGKEVQVDL 109 (206)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEe
Confidence 34568999999999999999975
No 412
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=33.50 E-value=51 Score=29.73 Aligned_cols=28 Identities=11% Similarity=0.275 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccc
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSHA 73 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh~ 73 (237)
+.++++++++.|+++|+-||.|-++...
T Consensus 195 s~~~~~~l~~~a~~~~~~ii~De~y~~~ 222 (412)
T PTZ00433 195 SRKHVEDIIRLCEELRLPLISDEIYAGM 222 (412)
T ss_pred CHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 4789999999999999999999887654
No 413
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=33.43 E-value=73 Score=22.90 Aligned_cols=31 Identities=16% Similarity=0.227 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHHHH----cCC-EEEEEeeccccCC
Q psy9004 45 GTPEQLKYLVDECHK----AGL-YVLLDVVHSHASK 75 (237)
Q Consensus 45 Gt~~~l~~lv~~~H~----~Gi-~VilD~v~nh~~~ 75 (237)
|..+++-+++++||+ .|. ||+..+-+++...
T Consensus 46 Ge~dev~~~i~~~~e~~~~~G~~Rv~t~ikid~R~d 81 (97)
T TIGR00106 46 GDLDELFEAIKAIHEAVLEKGSDRVYTSIKIDTRTD 81 (97)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEEecCC
Confidence 667887777777764 566 8999998887654
No 414
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=33.41 E-value=62 Score=23.22 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEE
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLD 67 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD 67 (237)
|---+.+++++|++.|+++|..|++.
T Consensus 94 P~~~~~~~~~~l~~~a~~~~~~~~Vg 119 (120)
T PF01408_consen 94 PLALTLEEAEELVEAAKEKGVKVMVG 119 (120)
T ss_dssp SSSSSHHHHHHHHHHHHHHTSCEEEE
T ss_pred CCcCCHHHHHHHHHHHHHhCCEEEEe
Confidence 44557999999999999999998874
No 415
>smart00733 Mterf Mitochondrial termination factor repeats. Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.
Probab=33.39 E-value=32 Score=17.79 Aligned_cols=15 Identities=7% Similarity=0.142 Sum_probs=12.1
Q ss_pred ChHHhhHHHHHcCcc
Q psy9004 7 GTPEQLKYLVDECHK 21 (237)
Q Consensus 7 Gl~~~L~yl~~lGv~ 21 (237)
-|..+++||+++|+.
T Consensus 17 ~l~~~~~~l~~~g~~ 31 (31)
T smart00733 17 KLKPKVEFLKELGFS 31 (31)
T ss_pred HhhHHHHHHHHcCCC
Confidence 467789999999974
No 416
>PRK05926 hypothetical protein; Provisional
Probab=33.30 E-value=66 Score=29.02 Aligned_cols=62 Identities=11% Similarity=-0.007 Sum_probs=41.7
Q ss_pred HHhhHHHHHcCccccCccCCCCCCC---Cccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccccCC
Q psy9004 9 PEQLKYLVDECHKAGLFGTPEQLKY---LVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASK 75 (237)
Q Consensus 9 ~~~L~yl~~lGv~~pi~~~~~~~gY---~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~~ 75 (237)
.+.|..|++.|++. +... |. .......+ |.--+.++..+.++.||+.||++-.=+++.|.=.
T Consensus 169 ~e~l~~LkeAGl~~-~~g~----GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~~Gi~~~sgmi~G~gEt 234 (370)
T PRK05926 169 KEVLQTLKIAGLDS-IPGG----GAEILVDEIRETLAPGRLSSQGFLEIHKTAHSLGIPSNATMLCYHRET 234 (370)
T ss_pred HHHHHHHHHcCcCc-cCCC----CchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCcccCceEEeCCCC
Confidence 45678888888876 2211 11 11112223 4444678899999999999999998888887654
No 417
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=33.16 E-value=52 Score=29.01 Aligned_cols=29 Identities=17% Similarity=0.122 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccC
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSHAS 74 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh~~ 74 (237)
+.++++++++.|+++|+-||.|-+.....
T Consensus 166 ~~~~~~~i~~~a~~~~~~ii~De~y~~~~ 194 (364)
T PRK07865 166 GVDHLRKVVAWARERGAVVASDECYLELG 194 (364)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecchhhhc
Confidence 46899999999999999999998876544
No 418
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=33.03 E-value=36 Score=30.59 Aligned_cols=28 Identities=29% Similarity=0.458 Sum_probs=24.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEee
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVV 69 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v 69 (237)
..-|...+++++++.||++|+.|++|-+
T Consensus 175 n~tG~~~~~~~i~~~~~~~~~~vivD~a 202 (406)
T PRK09295 175 NVLGTENPLAEMIALAHQHGAKVLVDGA 202 (406)
T ss_pred hcccccCCHHHHHHHHHHcCCEEEEEcc
Confidence 4457788899999999999999999976
No 419
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=32.97 E-value=36 Score=30.84 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=25.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVH 70 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~ 70 (237)
..-|...+++++++.||++|+.|++|.+-
T Consensus 184 n~tG~~~~~~~I~~l~~~~g~~vivD~a~ 212 (424)
T PLN02855 184 NVLGSILPVEDIVHWAHAVGAKVLVDACQ 212 (424)
T ss_pred ccccccCCHHHHHHHHHHcCCEEEEEhhh
Confidence 44577888999999999999999999773
No 420
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=32.95 E-value=54 Score=29.61 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccC
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSHAS 74 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh~~ 74 (237)
+.++++++++.|+++++-||.|-+..+..
T Consensus 188 s~~~~~~l~~~a~~~~~~ii~De~Y~~l~ 216 (409)
T PLN00143 188 SYEHLNKIAETARKLGILVIADEVYGHIV 216 (409)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEccccccc
Confidence 37899999999999999999999877654
No 421
>PRK12928 lipoyl synthase; Provisional
Probab=32.94 E-value=1.2e+02 Score=26.34 Aligned_cols=58 Identities=17% Similarity=0.084 Sum_probs=40.0
Q ss_pred ChHHhhHHHHHcCccc-cCccCCCCCCC-Cccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q psy9004 7 GTPEQLKYLVDECHKA-GLFGTPEQLKY-LVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVH 70 (237)
Q Consensus 7 Gl~~~L~yl~~lGv~~-pi~~~~~~~gY-~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~ 70 (237)
-+.+.|..|++++++. +++. | .|+--.-+ .+|=++++|+.+-+.+.+.|.+-+.--.+
T Consensus 220 d~~etl~~Lrel~~d~v~i~~------Yl~p~~~~~~v~~~~~~~~f~~~~~~~~~~g~~~~~~~p~ 280 (290)
T PRK12928 220 EVIETLRDLRAVGCDRLTIGQ------YLRPSLAHLPVQRYWTPEEFEALGQIARELGFSHVRSGPL 280 (290)
T ss_pred HHHHHHHHHHhcCCCEEEEEc------CCCCCccCCceeeccCHHHHHHHHHHHHHcCCceeEecCc
Confidence 4567778888888764 2332 2 22222333 78889999999999999999887765443
No 422
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=32.94 E-value=53 Score=28.79 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccc
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSHA 73 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh~ 73 (237)
+.++++++++.|+++|+-||.|-++...
T Consensus 154 ~~~~~~~l~~~a~~~~~~ii~De~y~~~ 181 (350)
T TIGR03537 154 PRSYLKETIAMCREHGIILCSDECYTEI 181 (350)
T ss_pred CHHHHHHHHHHHHHcCcEEEEecccccc
Confidence 4688999999999999999999887543
No 423
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=32.85 E-value=44 Score=27.53 Aligned_cols=18 Identities=28% Similarity=0.217 Sum_probs=16.5
Q ss_pred HHHHHHHHHcCCEEEEEe
Q psy9004 51 KYLVDECHKAGLYVLLDV 68 (237)
Q Consensus 51 ~~lv~~~H~~Gi~VilD~ 68 (237)
.++|++||++|++|++.-
T Consensus 184 ~~~v~~~~~~G~~v~~WT 201 (226)
T cd08568 184 VELLRLLRKLGLKIVLWT 201 (226)
T ss_pred HHHHHHHHHCCCEEEEEc
Confidence 689999999999999984
No 424
>PRK08912 hypothetical protein; Provisional
Probab=32.82 E-value=46 Score=29.64 Aligned_cols=27 Identities=26% Similarity=0.450 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccc
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSH 72 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh 72 (237)
+.++++++++.|+++++.||+|-+...
T Consensus 177 s~~~~~~i~~~~~~~~~~ii~De~y~~ 203 (387)
T PRK08912 177 PREELALLAEFCQRHDAVAICDEVWEH 203 (387)
T ss_pred CHHHHHHHHHHHHHCCeEEEEhhhhhh
Confidence 368999999999999999999977643
No 425
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=32.72 E-value=56 Score=28.29 Aligned_cols=29 Identities=14% Similarity=0.250 Sum_probs=25.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVH 70 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~ 70 (237)
+..|+..+++++++.||++|+-+|+|-+.
T Consensus 136 ~~~G~~~~~~~i~~l~~~~~~~livD~~~ 164 (355)
T TIGR03301 136 TTTGILNPLEAIAKVARSHGAVLIVDAMS 164 (355)
T ss_pred CcccchhHHHHHHHHHHHcCCEEEEEecc
Confidence 44588888999999999999999999753
No 426
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=32.67 E-value=55 Score=26.46 Aligned_cols=33 Identities=9% Similarity=0.150 Sum_probs=27.8
Q ss_pred Cccccccc-CCCCCHHHHHHHHHHHHHcCCEEEE
Q psy9004 34 LVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLL 66 (237)
Q Consensus 34 ~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~Vil 66 (237)
.+.|..-+ +.-|...++...++.|+++|+++|.
T Consensus 110 ~~~Dv~I~iS~SG~t~~~i~~~~~ak~~g~~iI~ 143 (192)
T PRK00414 110 REGDVLLGISTSGNSGNIIKAIEAARAKGMKVIT 143 (192)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEE
Confidence 34456666 8889999999999999999999986
No 427
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=32.64 E-value=54 Score=23.85 Aligned_cols=31 Identities=19% Similarity=0.106 Sum_probs=25.7
Q ss_pred Cccccccc-CCCCCHHHHHHHHHHHHHcCCEE
Q psy9004 34 LVDECHKA-GLFGTPEQLKYLVDECHKAGLYV 64 (237)
Q Consensus 34 ~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~V 64 (237)
.+.|..-+ +.=|...++.+.++.|+++|.+|
T Consensus 52 ~~~d~vi~is~sg~~~~~~~~~~~ak~~g~~v 83 (131)
T PF01380_consen 52 DPDDLVIIISYSGETRELIELLRFAKERGAPV 83 (131)
T ss_dssp STTEEEEEEESSSTTHHHHHHHHHHHHTTSEE
T ss_pred cccceeEeeeccccchhhhhhhHHHHhcCCeE
Confidence 45555556 77788899999999999999999
No 428
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=32.51 E-value=1.5e+02 Score=23.50 Aligned_cols=38 Identities=24% Similarity=0.069 Sum_probs=25.5
Q ss_pred HHHHhCCCcEEEecccCccccccCCCCCCCCCCcccccCccCChhHHHHHHHHHHHHHhhCCCeEEEE
Q psy9004 125 WYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPEIITIA 192 (237)
Q Consensus 125 ~w~~~~giDGfR~D~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~i~ 192 (237)
..++ .|+|++++|... .+-++++.+.++...|.+.+.+
T Consensus 95 ea~~-~g~d~I~lD~~~-----------------------------~~~~~~~v~~l~~~~~~v~ie~ 132 (169)
T PF01729_consen 95 EALE-AGADIIMLDNMS-----------------------------PEDLKEAVEELRELNPRVKIEA 132 (169)
T ss_dssp HHHH-TT-SEEEEES-C-----------------------------HHHHHHHHHHHHHHTTTSEEEE
T ss_pred HHHH-hCCCEEEecCcC-----------------------------HHHHHHHHHHHhhcCCcEEEEE
Confidence 3445 799999999874 2556777777788888844433
No 429
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=32.48 E-value=47 Score=27.90 Aligned_cols=18 Identities=28% Similarity=0.296 Sum_probs=16.2
Q ss_pred HHHHHHHHHcCCEEEEEe
Q psy9004 51 KYLVDECHKAGLYVLLDV 68 (237)
Q Consensus 51 ~~lv~~~H~~Gi~VilD~ 68 (237)
.++|+.||++|++|++.-
T Consensus 199 ~~~v~~~~~~g~~v~~WT 216 (249)
T PRK09454 199 EARVAALKAAGLRILVYT 216 (249)
T ss_pred HHHHHHHHHCCCEEEEEe
Confidence 589999999999998884
No 430
>PRK12414 putative aminotransferase; Provisional
Probab=32.46 E-value=43 Score=29.91 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccC
Q psy9004 47 PEQLKYLVDECHKAGLYVLLDVVHSHAS 74 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~VilD~v~nh~~ 74 (237)
.++++++++.|+++|+.||.|-+.....
T Consensus 181 ~~~~~~i~~~a~~~~~~ii~De~Y~~~~ 208 (384)
T PRK12414 181 AADLARLAQLTRNTDIVILSDEVYEHVV 208 (384)
T ss_pred HHHHHHHHHHHHHCCeEEEEhhhhhhcc
Confidence 6899999999999999999998876543
No 431
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=32.37 E-value=97 Score=27.19 Aligned_cols=29 Identities=3% Similarity=0.072 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccCCC
Q psy9004 47 PEQLKYLVDECHKAGLYVLLDVVHSHASKN 76 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~VilD~v~nh~~~~ 76 (237)
.++..+.++.||+.||++-..+.++| +..
T Consensus 148 ~~~~l~~i~~a~~~Gi~~~s~~i~G~-gEt 176 (322)
T TIGR03550 148 PAVRLETIEDAGRLKIPFTTGILIGI-GET 176 (322)
T ss_pred HHHHHHHHHHHHHcCCCccceeeEeC-CCC
Confidence 45678999999999999999999998 554
No 432
>cd08571 GDPD_SHV3_plant Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase (GDPD) domain present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserv
Probab=32.36 E-value=45 Score=29.10 Aligned_cols=19 Identities=37% Similarity=0.518 Sum_probs=17.0
Q ss_pred HHHHHHHHHcCCEEEEEee
Q psy9004 51 KYLVDECHKAGLYVLLDVV 69 (237)
Q Consensus 51 ~~lv~~~H~~Gi~VilD~v 69 (237)
.++|++||++||+|.+.-|
T Consensus 241 ~~~V~~ah~~Gl~V~~wTv 259 (302)
T cd08571 241 TSVVQDAHKAGLEVYVSGF 259 (302)
T ss_pred cHHHHHHHHcCCEEEEEEE
Confidence 4889999999999999865
No 433
>PRK07681 aspartate aminotransferase; Provisional
Probab=32.35 E-value=53 Score=29.45 Aligned_cols=28 Identities=14% Similarity=0.165 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccc
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSHA 73 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh~ 73 (237)
+.++++++++.|+++|+-||.|-+.-..
T Consensus 184 s~~~~~~i~~~a~~~~~~iI~De~y~~~ 211 (399)
T PRK07681 184 HEDFFKEVIAFAKKHNIIVVHDFAYAEF 211 (399)
T ss_pred CHHHHHHHHHHHHHcCeEEEEeccchhh
Confidence 4789999999999999999999887644
No 434
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=32.35 E-value=45 Score=26.02 Aligned_cols=19 Identities=42% Similarity=0.426 Sum_probs=16.8
Q ss_pred HHHHHHHHHcCCEEEEEee
Q psy9004 51 KYLVDECHKAGLYVLLDVV 69 (237)
Q Consensus 51 ~~lv~~~H~~Gi~VilD~v 69 (237)
.++++.||++|++|+++.|
T Consensus 150 ~~~i~~~~~~g~~v~~wtv 168 (189)
T cd08556 150 PELVRAAHAAGLKVYVWTV 168 (189)
T ss_pred HHHHHHHHHcCCEEEEEcC
Confidence 6889999999999999754
No 435
>PLN02822 serine palmitoyltransferase
Probab=32.25 E-value=42 Score=31.31 Aligned_cols=30 Identities=30% Similarity=0.183 Sum_probs=25.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVHS 71 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~n 71 (237)
+.-|..-.|+++++-|+++|+.+|+|-+..
T Consensus 256 ~~~G~i~~L~~i~~l~~k~~~~LIvDEa~s 285 (481)
T PLN02822 256 QNSGQIAPLDEIVRLKEKYRFRVLLDESNS 285 (481)
T ss_pred CCCCCccCHHHHHHHHHHcCCEEEEECCcc
Confidence 445666669999999999999999998765
No 436
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=32.23 E-value=37 Score=30.40 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=25.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVH 70 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~ 70 (237)
..-|...+++++++.||++|+.|++|.+-
T Consensus 171 n~tG~~~~~~~i~~l~~~~g~~~ivD~a~ 199 (401)
T PRK10874 171 NVTGGCPDLARAITLAHQAGMVVMVDGAQ 199 (401)
T ss_pred ccccCcCCHHHHHHHHHHcCCEEEEECCc
Confidence 44577788999999999999999999875
No 437
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=32.22 E-value=56 Score=24.07 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=23.8
Q ss_pred hHHhhHHHHHcCccccCccCCCCCCCCcccccccCCCCCHHHHHHHHHHHHHcCCEEEE
Q psy9004 8 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLL 66 (237)
Q Consensus 8 l~~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v~~~Gt~~~l~~lv~~~H~~Gi~Vil 66 (237)
+.+.++.+.++|+.. ++--++ ..-+++++.|++.||+|+-
T Consensus 68 ~~~~v~~~~~~g~~~-v~~~~g------------------~~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 68 VPEIVDEAAALGVKA-VWLQPG------------------AESEELIEAAREAGIRVIG 107 (116)
T ss_dssp HHHHHHHHHHHT-SE-EEE-TT------------------S--HHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHcCCCE-EEEEcc------------------hHHHHHHHHHHHcCCEEEe
Confidence 345667777778766 332221 3337788899999999874
No 438
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=32.18 E-value=52 Score=30.65 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEee
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVV 69 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v 69 (237)
+++.++++.+-||++||+|.||-.
T Consensus 202 slenlr~V~~la~~~GIplhLDgA 225 (467)
T TIGR02617 202 SLANLKAVYEIAKKYDIPVVMDSA 225 (467)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEhH
Confidence 389999999999999999999973
No 439
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=32.13 E-value=36 Score=31.41 Aligned_cols=29 Identities=17% Similarity=0.312 Sum_probs=24.8
Q ss_pred CCCCCHH----HHHHHHHHHHHcCCEEEEEeec
Q psy9004 42 GLFGTPE----QLKYLVDECHKAGLYVLLDVVH 70 (237)
Q Consensus 42 ~~~Gt~~----~l~~lv~~~H~~Gi~VilD~v~ 70 (237)
...|++. ++.++++.||++|+.||.|-++
T Consensus 154 e~pgnP~~~v~Di~~I~~iA~~~gi~livD~T~ 186 (432)
T PRK06702 154 ESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTL 186 (432)
T ss_pred EcCCCccccccCHHHHHHHHHHcCCEEEEECCC
Confidence 4456666 8999999999999999999875
No 440
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=32.12 E-value=39 Score=31.11 Aligned_cols=28 Identities=18% Similarity=0.453 Sum_probs=24.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEee
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVV 69 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v 69 (237)
+.+|...+++++.+.||++|..+++|.+
T Consensus 191 s~~g~~~di~~I~~i~~~~ga~l~vDaa 218 (452)
T PTZ00094 191 SAYPRDIDYKRFREICDSVGAYLMADIA 218 (452)
T ss_pred CCCCCccCHHHHHHHHHHcCCEEEEecc
Confidence 5578888899999999999999999976
No 441
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=32.05 E-value=43 Score=30.78 Aligned_cols=30 Identities=13% Similarity=0.241 Sum_probs=25.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVHS 71 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~n 71 (237)
...|...+++++++.||++|+.||+|-++.
T Consensus 160 NPtG~v~di~~I~~la~~~gi~vIvD~t~a 189 (431)
T PRK08248 160 NPKGDVLDIEAVAAIAHEHGIPLIVDNTFA 189 (431)
T ss_pred CCCCcccCHHHHHHHHHHcCCEEEEeCCCC
Confidence 345777889999999999999999998753
No 442
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=32.00 E-value=63 Score=29.06 Aligned_cols=30 Identities=27% Similarity=0.476 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccCC
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSHASK 75 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh~~~ 75 (237)
+.+.++++++-|+++|+-||+|-|..+.+.
T Consensus 203 ~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~ 232 (403)
T PRK05093 203 TPEFLQGLRELCDQHNALLIFDEVQTGMGR 232 (403)
T ss_pred CHHHHHHHHHHHHHcCCEEEEechhhCCCC
Confidence 568899999999999999999999665544
No 443
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=31.99 E-value=45 Score=28.14 Aligned_cols=18 Identities=33% Similarity=0.237 Sum_probs=15.9
Q ss_pred HHHHHHHHHcCCEEEEEe
Q psy9004 51 KYLVDECHKAGLYVLLDV 68 (237)
Q Consensus 51 ~~lv~~~H~~Gi~VilD~ 68 (237)
.++|++||++|++|.+.-
T Consensus 213 ~~~v~~~~~~g~~v~~WT 230 (252)
T cd08574 213 AQEIREYSKANISVNLYV 230 (252)
T ss_pred HHHHHHHHHCCCEEEEEc
Confidence 579999999999999873
No 444
>PRK13937 phosphoheptose isomerase; Provisional
Probab=31.92 E-value=62 Score=25.97 Aligned_cols=32 Identities=6% Similarity=0.110 Sum_probs=27.3
Q ss_pred ccccccc-CCCCCHHHHHHHHHHHHHcCCEEEE
Q psy9004 35 VDECHKA-GLFGTPEQLKYLVDECHKAGLYVLL 66 (237)
Q Consensus 35 ~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~Vil 66 (237)
..|..-+ +.-|...+..+.++.|+++|++||.
T Consensus 106 ~~Dl~i~iS~sG~t~~~~~~~~~ak~~g~~~I~ 138 (188)
T PRK13937 106 PGDVLIGISTSGNSPNVLAALEKARELGMKTIG 138 (188)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEE
Confidence 4456666 8889999999999999999999985
No 445
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=31.86 E-value=41 Score=29.74 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEeeccc
Q psy9004 45 GTPEQLKYLVDECHKAGLYVLLDVVHSH 72 (237)
Q Consensus 45 Gt~~~l~~lv~~~H~~Gi~VilD~v~nh 72 (237)
|....++++++.||++|+.||+|-+..+
T Consensus 177 G~~~~~~~i~~l~~~~~~~li~De~~~~ 204 (385)
T TIGR01825 177 GDVAPLPEIVELAERYGAVTYVDDAHGS 204 (385)
T ss_pred CCccCHHHHHHHHHHhCCEEEEECcccc
Confidence 5556789999999999999999988643
No 446
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=31.80 E-value=48 Score=28.09 Aligned_cols=19 Identities=21% Similarity=0.137 Sum_probs=17.0
Q ss_pred HHHHHHHHHcCCEEEEEee
Q psy9004 51 KYLVDECHKAGLYVLLDVV 69 (237)
Q Consensus 51 ~~lv~~~H~~Gi~VilD~v 69 (237)
+++|+++|++|++|++.-|
T Consensus 218 ~~~v~~~~~~G~~v~vWTV 236 (258)
T cd08573 218 SAYVRYWRARGIRVIAWTV 236 (258)
T ss_pred HHHHHHHHHCCCEEEEEec
Confidence 5899999999999999855
No 447
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=31.75 E-value=64 Score=28.85 Aligned_cols=29 Identities=10% Similarity=0.304 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccccCC
Q psy9004 47 PEQLKYLVDECHKAGLYVLLDVVHSHASK 75 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~VilD~v~nh~~~ 75 (237)
.+.|+++.+-|+++|+.||+|-|....+.
T Consensus 207 ~~~l~~l~~l~~~~gi~lI~DEv~~g~g~ 235 (401)
T PRK00854 207 AGYFTRVRELCTANNVTLILDEIQTGLGR 235 (401)
T ss_pred HHHHHHHHHHHHHcCCEEEEechhhCCCC
Confidence 45699999999999999999999764443
No 448
>PF15614 WHIM3: WSTF, HB1, Itc1p, MBD9 motif 3
Probab=31.72 E-value=32 Score=21.27 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=16.5
Q ss_pred CCCHHHHHHHHHHH-HHcCCE
Q psy9004 44 FGTPEQLKYLVDEC-HKAGLY 63 (237)
Q Consensus 44 ~Gt~~~l~~lv~~~-H~~Gi~ 63 (237)
|-+++++.+|++++ |-+|+|
T Consensus 4 ~~~~e~ld~L~~aL~~prG~R 24 (46)
T PF15614_consen 4 YDDPEELDELLKALENPRGKR 24 (46)
T ss_pred ccCHHHHHHHHHHHcCcccHh
Confidence 34688999999999 888875
No 449
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=31.57 E-value=58 Score=28.72 Aligned_cols=30 Identities=23% Similarity=0.516 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEeeccccC
Q psy9004 45 GTPEQLKYLVDECHKAGLYVLLDVVHSHAS 74 (237)
Q Consensus 45 Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~ 74 (237)
=+.++++++++.|+++|+.||.|-+.-...
T Consensus 158 ~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~ 187 (354)
T PRK06358 158 ISKEEMKKILDKCEKRNIYLIIDEAFMDFL 187 (354)
T ss_pred cCHHHHHHHHHHHHhcCCEEEEeCcccccC
Confidence 357999999999999999999998765443
No 450
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=31.54 E-value=1e+02 Score=26.97 Aligned_cols=59 Identities=19% Similarity=0.181 Sum_probs=40.5
Q ss_pred CChHHhhHHHHHcCccc---cCccCCCCCCCCcccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q psy9004 6 FGTPEQLKYLVDECHKA---GLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVH 70 (237)
Q Consensus 6 ~Gl~~~L~yl~~lGv~~---pi~~~~~~~gY~~~d~~~v~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~ 70 (237)
+-+.+.+..|+++|++. ..|--|+...+.+ .+|=++++|..+-+.|-++|.+-+.--.+
T Consensus 222 ee~~etl~~Lrelg~d~v~igqYl~p~~~~~~v------~~~~~p~~f~~~~~~a~~~gf~~v~~~p~ 283 (302)
T TIGR00510 222 EEIKQTLKDLRDHGVTMVTLGQYLRPSRRHLPV------KRYVSPEEFDYYRSVALEMGFLHAACGPF 283 (302)
T ss_pred HHHHHHHHHHHhcCCCEEEeecccCCCCCCCcc------ccCCCHHHHHHHHHHHHHcCChheEeccc
Confidence 34677888889999765 2233332222222 67779999999999999999876665443
No 451
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=31.53 E-value=58 Score=28.87 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecc
Q psy9004 47 PEQLKYLVDECHKAGLYVLLDVVHS 71 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~VilD~v~n 71 (237)
.++++++++.|+++|.-||+|-+.-
T Consensus 154 ~~~L~~i~~la~~~~~~livDEAy~ 178 (346)
T TIGR03576 154 EEDLKRVIKQAKSKEAIVLVDDASG 178 (346)
T ss_pred HHHHHHHHHHHHHcCCEEEEECCcc
Confidence 4899999999999999999997743
No 452
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=31.51 E-value=59 Score=29.09 Aligned_cols=28 Identities=36% Similarity=0.420 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccc
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSHA 73 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh~ 73 (237)
+.++++++++.|+++|+-||+|-+.-..
T Consensus 184 s~~~~~~l~~~~~~~~~~ii~D~~y~~~ 211 (391)
T PRK07309 184 SREQIKALADVLKKYDIFVISDEVYSEL 211 (391)
T ss_pred CHHHHHHHHHHHHHcCcEEEEEccccce
Confidence 4789999999999999999999876543
No 453
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=31.43 E-value=48 Score=27.10 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=16.3
Q ss_pred HHHHHHHHHcCCEEEEEe
Q psy9004 51 KYLVDECHKAGLYVLLDV 68 (237)
Q Consensus 51 ~~lv~~~H~~Gi~VilD~ 68 (237)
.++|+.+|++|++|++..
T Consensus 180 ~~~v~~~~~~G~~v~~wt 197 (220)
T cd08579 180 KEFIRQAHQNGKKVYVWT 197 (220)
T ss_pred HHHHHHHHHCCCEEEEEc
Confidence 588999999999999984
No 454
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=31.40 E-value=75 Score=27.91 Aligned_cols=60 Identities=18% Similarity=0.042 Sum_probs=38.1
Q ss_pred hHHhhHHHHHcCccccCccCCCCCCCCcccccccCCCCCHHHHHHHHHHHHHcCC-EEEEEeec
Q psy9004 8 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL-YVLLDVVH 70 (237)
Q Consensus 8 l~~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v~~~Gt~~~l~~lv~~~H~~Gi-~VilD~v~ 70 (237)
+.+.++.|++.|++. +.-| -.+..+.-|..+..-|+.+...+.+++|.+.|+ .|-+..|+
T Consensus 103 l~~~~~~L~~aGl~~-v~IS--lDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~ 163 (329)
T PRK13361 103 LARFAAELADAGLKR-LNIS--LDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVI 163 (329)
T ss_pred HHHHHHHHHHcCCCe-EEEE--eccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEE
Confidence 445556666666554 2111 123344445555335788888999999999999 78777765
No 455
>cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI),
Probab=31.33 E-value=48 Score=28.67 Aligned_cols=19 Identities=42% Similarity=0.476 Sum_probs=17.0
Q ss_pred HHHHHHHHHcCCEEEEEee
Q psy9004 51 KYLVDECHKAGLYVLLDVV 69 (237)
Q Consensus 51 ~~lv~~~H~~Gi~VilD~v 69 (237)
.++|++||++|++|.+.-|
T Consensus 246 ~~~v~~a~~~Gl~v~~WTv 264 (296)
T cd08559 246 TDLVKDAHKAGLLVHPYTF 264 (296)
T ss_pred hHHHHHHHHcCCEEEEEEe
Confidence 6899999999999999844
No 456
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=30.88 E-value=60 Score=28.93 Aligned_cols=27 Identities=33% Similarity=0.580 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccc
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSH 72 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh 72 (237)
+.+.++++++.|+++|+.||+|-|.-.
T Consensus 210 ~~~~l~~l~~l~~~~~~~li~Dev~~g 236 (413)
T cd00610 210 PPGYLKALRELCRKHGILLIADEVQTG 236 (413)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccccC
Confidence 356699999999999999999988543
No 457
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=30.87 E-value=77 Score=28.01 Aligned_cols=55 Identities=7% Similarity=-0.135 Sum_probs=37.1
Q ss_pred CCcCChHHhhHHHHHcC-ccccCccCCCCCCCCcccccccCCCCCHHHHHHHHHHHHHcCC
Q psy9004 3 TNGFGTPEQLKYLVDEC-HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGL 62 (237)
Q Consensus 3 ~~~~Gl~~~L~yl~~lG-v~~pi~~~~~~~gY~~~d~~~v~~~Gt~~~l~~lv~~~H~~Gi 62 (237)
.++..+.++++|+.+++ +.. +=-..+.+|.... ++-+-+...+..|++++.++|.
T Consensus 235 atldd~v~hI~h~v~~~G~dh-VglGsDf~g~~~~----p~gled~~~l~~l~~~L~~~G~ 290 (313)
T COG2355 235 ATLDDLVRHIDHFVELVGIDH-VGLGSDFDGGTGP----PDGLEDVGKLPNLTAALIERGY 290 (313)
T ss_pred CCHHHHHHHHHHHHHhcCcce-eEecccccCCCCC----chhhcChhHHHHHHHHHHHcCC
Confidence 46678889999999884 555 3222333332211 2567788999999999998884
No 458
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=30.87 E-value=44 Score=30.08 Aligned_cols=28 Identities=18% Similarity=0.500 Sum_probs=24.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEee
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVV 69 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v 69 (237)
+.+|...+++++++.||++|+.||+|-+
T Consensus 174 ~~~~~~~~~~~I~~la~~~~~~livD~a 201 (416)
T PRK00011 174 SAYSRPIDFKRFREIADEVGAYLMVDMA 201 (416)
T ss_pred CcCCCccCHHHHHHHHHHcCCEEEEECc
Confidence 5556666899999999999999999986
No 459
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=30.87 E-value=74 Score=28.58 Aligned_cols=28 Identities=43% Similarity=0.472 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccc
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSHA 73 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh~ 73 (237)
+.++++++++.|+++|+-||.|-+....
T Consensus 191 s~~~~~~l~~~a~~~~~~iI~De~y~~~ 218 (402)
T TIGR03542 191 TKEQLKELVDYANEHGSLILFDAAYSAF 218 (402)
T ss_pred CHHHHHHHHHHHHHcCeEEEEEchhhhh
Confidence 4799999999999999999999876654
No 460
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=30.84 E-value=40 Score=29.68 Aligned_cols=29 Identities=17% Similarity=0.396 Sum_probs=24.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVH 70 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~ 70 (237)
...|...+++++++.||++|+.||+|-+-
T Consensus 148 n~tG~~~~~~~i~~l~~~~~~~livD~a~ 176 (376)
T TIGR01977 148 NVTGTILPIEEIGELAQENGIFFILDAAQ 176 (376)
T ss_pred CCccccCCHHHHHHHHHHcCCEEEEEhhh
Confidence 34677778899999999999999999774
No 461
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=30.81 E-value=45 Score=30.25 Aligned_cols=30 Identities=17% Similarity=0.161 Sum_probs=24.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVHS 71 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~n 71 (237)
...|..-+++++++.||++|+.||+|-+.-
T Consensus 160 NPtg~v~dl~~I~~la~~~gi~livD~t~a 189 (398)
T PRK08249 160 NPTLKIVDIERLAAAAKKVGALVVVDNTFA 189 (398)
T ss_pred CCCCccCCHHHHHHHHHHcCCEEEEECCcC
Confidence 345666778999999999999999998754
No 462
>PF03009 GDPD: Glycerophosphoryl diester phosphodiesterase family; InterPro: IPR004129 Glycerophosphoryl diester phosphodiesterases display broad specificity for glycerophosphodiesters; glycerophosphocholine, glycerophosphoethanolamine, glycerophosphoglycerol, and bis(glycerophosphoglycerol) all of which are are hydrolysed by this enzyme.; GO: 0008889 glycerophosphodiester phosphodiesterase activity, 0006071 glycerol metabolic process; PDB: 3I10_A 2P76_H 2OOG_F 3KS6_D 3KS5_A 2PZ0_B 1YDY_B 1T8Q_A 1O1Z_A 3L12_B ....
Probab=30.75 E-value=43 Score=27.33 Aligned_cols=18 Identities=50% Similarity=0.558 Sum_probs=14.7
Q ss_pred HHHHHHHHHcCCEEEEEe
Q psy9004 51 KYLVDECHKAGLYVLLDV 68 (237)
Q Consensus 51 ~~lv~~~H~~Gi~VilD~ 68 (237)
.++|+.||++|++|+++.
T Consensus 212 ~~~v~~~~~~g~~v~~wt 229 (256)
T PF03009_consen 212 PRLVQEAHKAGLKVYVWT 229 (256)
T ss_dssp HHHHHHHHHTT-EEEEBS
T ss_pred HHHHHHHHHCCCEEEEEe
Confidence 469999999999999873
No 463
>PRK07550 hypothetical protein; Provisional
Probab=30.57 E-value=59 Score=28.89 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccc
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSHA 73 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh~ 73 (237)
+.++++++++.|+++|+.||.|-+.-..
T Consensus 181 ~~~~~~~i~~~~~~~~~~iI~Dd~y~~~ 208 (386)
T PRK07550 181 PPELLHELYDLARRHGIALILDETYRDF 208 (386)
T ss_pred CHHHHHHHHHHHHHcCeEEEEeccchhh
Confidence 3678999999999999999999886433
No 464
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=30.55 E-value=43 Score=30.18 Aligned_cols=26 Identities=8% Similarity=0.087 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEeec
Q psy9004 45 GTPEQLKYLVDECHKAGLYVLLDVVH 70 (237)
Q Consensus 45 Gt~~~l~~lv~~~H~~Gi~VilD~v~ 70 (237)
|..-+++++++.||++|+.||+|-+.
T Consensus 151 G~v~dl~~I~~la~~~gi~livD~t~ 176 (385)
T PRK08574 151 LKVIDVPEVAKAAKELGAILVVDNTF 176 (385)
T ss_pred CEecCHHHHHHHHHHcCCEEEEECCC
Confidence 45567899999999999999999774
No 465
>PLN02219 probable galactinol--sucrose galactosyltransferase 2
Probab=30.51 E-value=5.7e+02 Score=25.64 Aligned_cols=31 Identities=16% Similarity=0.227 Sum_probs=21.0
Q ss_pred CHH-HHHHHHHHHHHHHHhCCCcEEEecccCcc
Q psy9004 112 EIE-VLRFLLSNLRWYLEEYQFDGFRFDGVTSM 143 (237)
Q Consensus 112 ~p~-v~~~i~~~~~~w~~~~giDGfR~D~~~~l 143 (237)
+|+ +.++..++..++.+ .||||..+|+-.-+
T Consensus 360 ~P~~~~~FYd~~hsyLas-~GVDgVKVDvQ~~L 391 (775)
T PLN02219 360 NPKKVFNFYNELHAYLAS-CGVDGVKVDVQNII 391 (775)
T ss_pred CHHHHHHHHHHHHHHHHH-cCCCEEEEchhhhH
Confidence 454 45555555566655 89999999986543
No 466
>PRK08354 putative aminotransferase; Provisional
Probab=30.49 E-value=57 Score=28.12 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccc
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSHA 73 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh~ 73 (237)
+.++++++++.|+++|+-||.|-+.-..
T Consensus 135 ~~~~l~~l~~~a~~~~~~li~De~y~~f 162 (311)
T PRK08354 135 NFKELKPLLDAVEDRNALLILDEAFIDF 162 (311)
T ss_pred CHHHHHHHHHHhhhcCcEEEEeCcchhc
Confidence 4799999999999999999999876443
No 467
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=30.45 E-value=45 Score=30.54 Aligned_cols=30 Identities=23% Similarity=0.358 Sum_probs=25.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVHS 71 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~n 71 (237)
...|..-+++++++.||++|+.||+|-+.-
T Consensus 159 NptG~v~dl~~I~~la~~~gi~livD~a~a 188 (427)
T PRK05994 159 NPGGTVTDIAAIAEVAHRAGLPLIVDNTLA 188 (427)
T ss_pred CCCCeecCHHHHHHHHHHcCCEEEEECCcc
Confidence 345667789999999999999999997753
No 468
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=30.35 E-value=76 Score=25.05 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=25.1
Q ss_pred cc-CCCCCHHHHHHHHHHHHHcCCEEEEEe
Q psy9004 40 KA-GLFGTPEQLKYLVDECHKAGLYVLLDV 68 (237)
Q Consensus 40 ~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~ 68 (237)
.+ +..-+++.+.++++++.++|++||+=+
T Consensus 31 ~V~SaHRtp~~~~~~~~~a~~~g~~viIa~ 60 (156)
T TIGR01162 31 RVVSAHRTPELMLEYAKEAEERGIKVIIAG 60 (156)
T ss_pred EEECcccCHHHHHHHHHHHHHCCCeEEEEe
Confidence 45 778899999999999999999988653
No 469
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=30.28 E-value=1.2e+02 Score=25.11 Aligned_cols=59 Identities=17% Similarity=0.144 Sum_probs=43.0
Q ss_pred ChHHhh--HHHHHcCccccCccCC--CCCC----CCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEE
Q psy9004 7 GTPEQL--KYLVDECHKAGLFGTP--EQLK----YLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLL 66 (237)
Q Consensus 7 Gl~~~L--~yl~~lGv~~pi~~~~--~~~g----Y~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~Vil 66 (237)
|++.|- ..|..+|.++ .|-.| ..|| ..+.|-.-. +.=|..+++..++..|++.|++||.
T Consensus 51 G~Igkk~Aa~L~s~G~~a-~fv~p~ea~hgdlg~i~~~DvviaiS~SGeT~el~~~~~~aK~~g~~lia 118 (202)
T COG0794 51 GLIGKKFAARLASTGTPA-FFVGPAEALHGDLGMITPGDVVIAISGSGETKELLNLAPKAKRLGAKLIA 118 (202)
T ss_pred HHHHHHHHHHHHccCCce-EEecCchhccCCccCCCCCCEEEEEeCCCcHHHHHHHHHHHHHcCCcEEE
Confidence 444442 5677778776 44443 2343 456677777 8889999999999999999999985
No 470
>PRK13938 phosphoheptose isomerase; Provisional
Probab=30.28 E-value=67 Score=26.19 Aligned_cols=33 Identities=12% Similarity=0.066 Sum_probs=27.0
Q ss_pred Cccccccc-CCCCCHHHHHHHHHHHHHcCCEEEE
Q psy9004 34 LVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLL 66 (237)
Q Consensus 34 ~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~Vil 66 (237)
.+.|..-+ +.-|...++.+.++.|+++|++||.
T Consensus 112 ~~~DllI~iS~SG~t~~vi~a~~~Ak~~G~~vI~ 145 (196)
T PRK13938 112 RPGDTLFAISTSGNSMSVLRAAKTARELGVTVVA 145 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEE
Confidence 34555556 7778889999999999999999985
No 471
>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.
Probab=30.23 E-value=50 Score=28.04 Aligned_cols=18 Identities=39% Similarity=0.412 Sum_probs=16.1
Q ss_pred HHHHHHHHHcCCEEEEEe
Q psy9004 51 KYLVDECHKAGLYVLLDV 68 (237)
Q Consensus 51 ~~lv~~~H~~Gi~VilD~ 68 (237)
.++|+++|++|++|++.-
T Consensus 221 ~~~v~~~~~~G~~v~vWT 238 (264)
T cd08575 221 PNLFDHLRKRGIQVYLWV 238 (264)
T ss_pred HHHHHHHHhcCCcEEEEE
Confidence 579999999999999974
No 472
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=30.17 E-value=1e+02 Score=27.00 Aligned_cols=60 Identities=23% Similarity=0.072 Sum_probs=36.7
Q ss_pred hHHhhHHHHHcCccccCccCCCCCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCE-EEEEeec
Q psy9004 8 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLY-VLLDVVH 70 (237)
Q Consensus 8 l~~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~-VilD~v~ 70 (237)
+.+.++.|++.|+.. +.-|- ++..+.-|..+ ..-|+.+...+-++++.+.|+. |-+-+|+
T Consensus 101 l~~~~~~L~~~gl~~-v~ISl--d~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv 162 (334)
T TIGR02666 101 LARHAKDLKEAGLKR-VNVSL--DSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVV 162 (334)
T ss_pred HHHHHHHHHHcCCCe-EEEec--ccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 445566666666543 22111 22333334445 4456788889999999999997 7776654
No 473
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=30.06 E-value=54 Score=27.16 Aligned_cols=17 Identities=35% Similarity=0.673 Sum_probs=15.9
Q ss_pred HHHHHHHHHcCCEEEEE
Q psy9004 51 KYLVDECHKAGLYVLLD 67 (237)
Q Consensus 51 ~~lv~~~H~~Gi~VilD 67 (237)
+++|+.||++|++|.+.
T Consensus 195 ~~~v~~~~~~Gl~v~vw 211 (237)
T cd08583 195 DKLIEKLNKAGIYVYVY 211 (237)
T ss_pred HHHHHHHHHCCCEEEEE
Confidence 68999999999999988
No 474
>PRK06107 aspartate aminotransferase; Provisional
Probab=30.02 E-value=56 Score=29.33 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHHHc-CCEEEEEeecccc
Q psy9004 46 TPEQLKYLVDECHKA-GLYVLLDVVHSHA 73 (237)
Q Consensus 46 t~~~l~~lv~~~H~~-Gi~VilD~v~nh~ 73 (237)
+.++++++++.|+++ |+.||.|-+..+.
T Consensus 184 s~~~~~~l~~~a~~~~~~~iI~De~y~~l 212 (402)
T PRK06107 184 SRAELRALADVLLRHPHVLVLTDDIYDHI 212 (402)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEehhcccc
Confidence 478999999999997 9999999877654
No 475
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=30.01 E-value=65 Score=25.32 Aligned_cols=33 Identities=6% Similarity=0.117 Sum_probs=27.3
Q ss_pred Cccccccc-CCCCCHHHHHHHHHHHHHcCCEEEE
Q psy9004 34 LVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLL 66 (237)
Q Consensus 34 ~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~Vil 66 (237)
...|..-+ +.-|...+..+.++.|+++|++||.
T Consensus 100 ~~~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~ 133 (177)
T cd05006 100 QPGDVLIGISTSGNSPNVLKALEAAKERGMKTIA 133 (177)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEE
Confidence 34555556 8889899999999999999999875
No 476
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=29.97 E-value=46 Score=30.54 Aligned_cols=30 Identities=20% Similarity=0.347 Sum_probs=24.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVHS 71 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~n 71 (237)
...|..-+++++++.||++|+.||+|-+.-
T Consensus 154 NPtG~v~dl~~I~~la~~~~i~vVvD~a~a 183 (425)
T PRK06084 154 NPAGNIIDIQALADAAHRHGVPLIVDNTVA 183 (425)
T ss_pred CCCCeecCHHHHHHHHHHcCCEEEEECCCc
Confidence 345666779999999999999999997653
No 477
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=29.93 E-value=43 Score=30.90 Aligned_cols=26 Identities=8% Similarity=0.166 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEeec
Q psy9004 45 GTPEQLKYLVDECHKAGLYVLLDVVH 70 (237)
Q Consensus 45 Gt~~~l~~lv~~~H~~Gi~VilD~v~ 70 (237)
|...+++++.+.||++|+.||+|-+.
T Consensus 169 ~~v~di~~I~~la~~~gi~livD~t~ 194 (437)
T PRK05613 169 ADVLDIPAVAEVAHRNQVPLIVDNTI 194 (437)
T ss_pred CcccCHHHHHHHHHHcCCeEEEECCC
Confidence 45689999999999999999999874
No 478
>PRK02947 hypothetical protein; Provisional
Probab=29.91 E-value=63 Score=27.23 Aligned_cols=32 Identities=13% Similarity=0.009 Sum_probs=27.0
Q ss_pred ccccccc-CCCCCHHHHHHHHHHHHHcCCEEEE
Q psy9004 35 VDECHKA-GLFGTPEQLKYLVDECHKAGLYVLL 66 (237)
Q Consensus 35 ~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~Vil 66 (237)
+.|..-+ +.-|...++.++++.|+++|++||.
T Consensus 106 ~~Dv~i~iS~sG~t~~~i~~~~~a~~~g~~vI~ 138 (246)
T PRK02947 106 PGDVLIVVSNSGRNPVPIEMALEAKERGAKVIA 138 (246)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEE
Confidence 4455556 7888899999999999999999985
No 479
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=29.87 E-value=3.3e+02 Score=22.72 Aligned_cols=52 Identities=15% Similarity=0.122 Sum_probs=33.8
Q ss_pred ChHHhhHHHHHcCccc-cCccCCCCCCCCcccccccCCCCCHHHHHHHHHHHHHcCCEEEE
Q psy9004 7 GTPEQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLL 66 (237)
Q Consensus 7 Gl~~~L~yl~~lGv~~-pi~~~~~~~gY~~~d~~~v~~~Gt~~~l~~lv~~~H~~Gi~Vil 66 (237)
|+...++.+.++|+.. -++... .+.+. +..-+.++++++.+.+.+.||+|.+
T Consensus 11 ~~~~~~~~~~~~G~~~vel~~~~-~~~~~-------~~~~~~~~~~~l~~~~~~~gl~ls~ 63 (273)
T smart00518 11 GLYKAFIEAVDIGARSFQLFLGN-PRSWK-------GVRLSEETAEKFKEALKENNIDVSV 63 (273)
T ss_pred cHhHHHHHHHHcCCCEEEEECCC-CCCCC-------CCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 6778889999999876 122211 11111 1122577888888889999999764
No 480
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=29.86 E-value=70 Score=26.08 Aligned_cols=32 Identities=9% Similarity=0.133 Sum_probs=26.9
Q ss_pred ccccccc-CCCCCHHHHHHHHHHHHHcCCEEEE
Q psy9004 35 VDECHKA-GLFGTPEQLKYLVDECHKAGLYVLL 66 (237)
Q Consensus 35 ~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~Vil 66 (237)
+.|..-+ +.-|...++.+.++.|+++|++||.
T Consensus 109 ~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~ 141 (196)
T PRK10886 109 AGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVA 141 (196)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEE
Confidence 4455556 7788899999999999999999985
No 481
>PRK07337 aminotransferase; Validated
Probab=29.82 E-value=78 Score=28.17 Aligned_cols=27 Identities=19% Similarity=0.477 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccc
Q psy9004 47 PEQLKYLVDECHKAGLYVLLDVVHSHA 73 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~VilD~v~nh~ 73 (237)
.++++++++.|+++|+-||+|-++...
T Consensus 182 ~~~~~~i~~~a~~~~~~ii~De~y~~~ 208 (388)
T PRK07337 182 PDELRRIVEAVRARGGFTIVDEIYQGL 208 (388)
T ss_pred HHHHHHHHHHHHHCCCEEEEecccccc
Confidence 789999999999999999999765544
No 482
>PRK08068 transaminase; Reviewed
Probab=29.76 E-value=60 Score=28.95 Aligned_cols=27 Identities=19% Similarity=0.076 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccc
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSH 72 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh 72 (237)
+.++++++++.|+++++-||+|-+...
T Consensus 185 s~~~~~~l~~la~~~~~~ii~Deay~~ 211 (389)
T PRK08068 185 TKAFFEETVAFAKKHNIGVVHDFAYGA 211 (389)
T ss_pred CHHHHHHHHHHHHHcCeEEEEehhhhh
Confidence 479999999999999999999987643
No 483
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=29.73 E-value=1.1e+02 Score=26.08 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=20.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEe
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDV 68 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~ 68 (237)
.+||+.++|++++ ++++|++|+|.
T Consensus 49 G~l~~~~~l~~~l---~~~~i~~VIDA 72 (248)
T PRK08057 49 GGFGGAEGLAAYL---REEGIDLVIDA 72 (248)
T ss_pred CCCCCHHHHHHHH---HHCCCCEEEEC
Confidence 7888888888876 58999999995
No 484
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=29.71 E-value=60 Score=30.25 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=22.8
Q ss_pred CCCH-HHHHHHHHHHHHcCCEEEEEee
Q psy9004 44 FGTP-EQLKYLVDECHKAGLYVLLDVV 69 (237)
Q Consensus 44 ~Gt~-~~l~~lv~~~H~~Gi~VilD~v 69 (237)
.|.. ++++++++.||++|.-|++|.+
T Consensus 220 tG~~~~dl~eI~~~a~~~gal~iVD~a 246 (481)
T PRK04366 220 LGLFERNILEIAEIVHEAGGLLYYDGA 246 (481)
T ss_pred ccccchHHHHHHHHHHHcCCEEEEEec
Confidence 5665 5899999999999999999976
No 485
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=29.63 E-value=66 Score=28.03 Aligned_cols=29 Identities=17% Similarity=0.350 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccC
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSHAS 74 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh~~ 74 (237)
+.++++++++.|+++|+-||.|-++....
T Consensus 140 s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~ 168 (332)
T PRK06425 140 SRDSLLTISEICRKKGALLFIDEAFIDFV 168 (332)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecchhccc
Confidence 48999999999999999999998876554
No 486
>PRK08363 alanine aminotransferase; Validated
Probab=29.60 E-value=61 Score=28.97 Aligned_cols=28 Identities=21% Similarity=0.214 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccc
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSHA 73 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh~ 73 (237)
+.++++++++.|+++|+.||.|-+..+.
T Consensus 184 ~~~~~~~l~~~a~~~~~~li~Deay~~~ 211 (398)
T PRK08363 184 EKKTLKEILDIAGEHDLPVISDEIYDLM 211 (398)
T ss_pred CHHHHHHHHHHHHHcCeEEEEhhhhhhh
Confidence 4789999999999999999999987654
No 487
>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism.
Probab=29.59 E-value=50 Score=28.28 Aligned_cols=21 Identities=14% Similarity=-0.010 Sum_probs=17.8
Q ss_pred HHHHHHHHHcCCEEEEEeecc
Q psy9004 51 KYLVDECHKAGLYVLLDVVHS 71 (237)
Q Consensus 51 ~~lv~~~H~~Gi~VilD~v~n 71 (237)
+++|+.||++|++|++.-|.|
T Consensus 248 ~~~v~~~~~~Gl~v~~wTv~~ 268 (290)
T cd08607 248 PSQIELAKSLGLVVFCWGDDL 268 (290)
T ss_pred hHHHHHHHHcCCEEEEECCCC
Confidence 588999999999999986643
No 488
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=29.54 E-value=49 Score=29.41 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=24.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVH 70 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~ 70 (237)
..-|+...++++++.||+.|+.+++|-+-
T Consensus 154 s~~G~i~pl~eI~~l~~~~~~~livDea~ 182 (370)
T PRK05937 154 SFKGTLAPLEQIIALSKKYHAHLIVDEAH 182 (370)
T ss_pred CCCCCccCHHHHHHHHHHcCCEEEEECCc
Confidence 44577777999999999999999999774
No 489
>PRK06767 methionine gamma-lyase; Provisional
Probab=29.33 E-value=48 Score=29.78 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q psy9004 43 LFGTPEQLKYLVDECHKAGLYVLLDVVHS 71 (237)
Q Consensus 43 ~~Gt~~~l~~lv~~~H~~Gi~VilD~v~n 71 (237)
..|+..+++++++.||++|+.||+|-.+.
T Consensus 158 ptG~v~dl~~I~~la~~~g~~vivD~a~a 186 (386)
T PRK06767 158 PTMKLIDLKQVIRVAKRNGLLVIVDNTFC 186 (386)
T ss_pred CCceecCHHHHHHHHHHcCCEEEEECCCc
Confidence 35667788999999999999999998864
No 490
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=29.33 E-value=1.5e+02 Score=24.77 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeccc
Q psy9004 47 PEQLKYLVDECHKAGLYVLLDVVHSH 72 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~VilD~v~nh 72 (237)
.++..++++.||++||++++=+-++.
T Consensus 115 ~~~~~~~~~~~~~~Gl~~~~~v~p~T 140 (244)
T PRK13125 115 PDDLEKYVEIIKNKGLKPVFFTSPKF 140 (244)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCC
Confidence 57899999999999999999666643
No 491
>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip
Probab=29.29 E-value=57 Score=27.00 Aligned_cols=19 Identities=21% Similarity=0.142 Sum_probs=16.7
Q ss_pred HHHHHHHHHHcCCEEEEEe
Q psy9004 50 LKYLVDECHKAGLYVLLDV 68 (237)
Q Consensus 50 l~~lv~~~H~~Gi~VilD~ 68 (237)
-+++|+.||++|++|.+.-
T Consensus 193 ~~~~v~~~~~~gl~v~~wT 211 (234)
T cd08570 193 GQAFLPELKKNGKKVFVWT 211 (234)
T ss_pred CHHHHHHHHHCCCEEEEEe
Confidence 4789999999999999873
No 492
>PRK07360 FO synthase subunit 2; Reviewed
Probab=29.28 E-value=96 Score=27.87 Aligned_cols=62 Identities=21% Similarity=0.132 Sum_probs=40.9
Q ss_pred HHhhHHHHHcCccccCccCCCCCCCCccccccc-CCCCCHHHHHHHHHHHHHcCCEEEEEeeccc
Q psy9004 9 PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKA-GLFGTPEQLKYLVDECHKAGLYVLLDVVHSH 72 (237)
Q Consensus 9 ~~~L~yl~~lGv~~pi~~~~~~~gY~~~d~~~v-~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh 72 (237)
.+.+..|++.|++. +..+.....+. .-+..+ |.=-+.++..+.++.||+.||++--=+.+.|
T Consensus 163 ~e~l~~LkeAGld~-~~~t~~e~l~~-~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~sg~i~G~ 225 (371)
T PRK07360 163 EEVLKALKDAGLDS-MPGTAAEILVD-EVRRIICPEKIKTAEWIEIVKTAHKLGLPTTSTMMYGH 225 (371)
T ss_pred HHHHHHHHHcCCCc-CCCcchhhccH-HHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEeeC
Confidence 46788899999877 32211111111 001123 4444678889999999999999999999988
No 493
>PRK07682 hypothetical protein; Validated
Probab=29.24 E-value=63 Score=28.60 Aligned_cols=29 Identities=21% Similarity=0.216 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccC
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSHAS 74 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh~~ 74 (237)
+.++++++++.|+++|+-||.|-+.....
T Consensus 172 s~~~~~~l~~~~~~~~~~ii~De~y~~~~ 200 (378)
T PRK07682 172 NKSELEEIAVIVEKHDLIVLSDEIYAELT 200 (378)
T ss_pred CHHHHHHHHHHHHHcCcEEEEehhhhhcc
Confidence 36899999999999999999998866554
No 494
>PLN02397 aspartate transaminase
Probab=29.20 E-value=73 Score=28.99 Aligned_cols=30 Identities=20% Similarity=0.203 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeeccccCC
Q psy9004 46 TPEQLKYLVDECHKAGLYVLLDVVHSHASK 75 (237)
Q Consensus 46 t~~~l~~lv~~~H~~Gi~VilD~v~nh~~~ 75 (237)
+.++++++++.|+++|+-||.|-+..+...
T Consensus 212 s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~ 241 (423)
T PLN02397 212 TPEQWEQISDLIKSKNHLPFFDSAYQGFAS 241 (423)
T ss_pred CHHHHHHHHHHHHhCCcEEEEecccCCccC
Confidence 379999999999999999999998877654
No 495
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=29.02 E-value=55 Score=29.53 Aligned_cols=28 Identities=32% Similarity=0.228 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEeecc
Q psy9004 44 FGTPEQLKYLVDECHKAGLYVLLDVVHS 71 (237)
Q Consensus 44 ~Gt~~~l~~lv~~~H~~Gi~VilD~v~n 71 (237)
-|..-+++++++-||++|+.+|+|-+..
T Consensus 151 ~G~i~~l~~i~~l~~~~g~~livDe~~~ 178 (392)
T PLN03227 151 TGTLAPLKELVALKEEFHYRLILDESFS 178 (392)
T ss_pred CCcccCHHHHHHHHHHcCCEEEEECccc
Confidence 3556668999999999999999998764
No 496
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=29.02 E-value=66 Score=25.76 Aligned_cols=21 Identities=19% Similarity=0.301 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEE
Q psy9004 47 PEQLKYLVDECHKAGLYVLLD 67 (237)
Q Consensus 47 ~~~l~~lv~~~H~~Gi~VilD 67 (237)
.+.+++|++.|+++|++||+=
T Consensus 105 ~~~l~~ii~~~~~~~~~vil~ 125 (204)
T cd01830 105 IAGYRQLIRRAHARGIKVIGA 125 (204)
T ss_pred HHHHHHHHHHHHHCCCeEEEe
Confidence 457899999999999999863
No 497
>PLN02242 methionine gamma-lyase
Probab=29.01 E-value=57 Score=29.84 Aligned_cols=28 Identities=21% Similarity=0.239 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEeecc
Q psy9004 44 FGTPEQLKYLVDECHKAGLYVLLDVVHS 71 (237)
Q Consensus 44 ~Gt~~~l~~lv~~~H~~Gi~VilD~v~n 71 (237)
.|...+++++++.||++|+.||+|-+..
T Consensus 176 tG~v~dl~~I~~la~~~gi~livDea~~ 203 (418)
T PLN02242 176 TLTVADIPELARIAHEKGVTVVVDNTFA 203 (418)
T ss_pred CCcccCHHHHHHHHHHhCCEEEEECCCC
Confidence 4667789999999999999999997653
No 498
>PLN02483 serine palmitoyltransferase
Probab=29.01 E-value=55 Score=30.59 Aligned_cols=29 Identities=34% Similarity=0.479 Sum_probs=25.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q psy9004 42 GLFGTPEQLKYLVDECHKAGLYVLLDVVH 70 (237)
Q Consensus 42 ~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~ 70 (237)
+.-|+..+++++++-||++|+.||+|-+.
T Consensus 251 s~~G~~~~l~~I~~la~~~~~~livDEa~ 279 (489)
T PLN02483 251 SMEGELCKLPEIVAVCKKYKAYVYLDEAH 279 (489)
T ss_pred CCCCcccCHHHHHHHHHHcCCEEEEECcC
Confidence 44577889999999999999999999884
No 499
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=28.99 E-value=87 Score=27.69 Aligned_cols=29 Identities=24% Similarity=0.441 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEeecccc
Q psy9004 45 GTPEQLKYLVDECHKAGLYVLLDVVHSHA 73 (237)
Q Consensus 45 Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~ 73 (237)
++.+.++++++-|+++|+-+|+|-|....
T Consensus 185 ~~~~~l~~l~~l~~~~~~~lI~DEv~~g~ 213 (377)
T PRK02936 185 ADPAFLQEVQTLCKKFGALLIIDEVQTGI 213 (377)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence 45788999999999999999999986433
No 500
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=28.95 E-value=76 Score=28.97 Aligned_cols=39 Identities=15% Similarity=0.341 Sum_probs=28.8
Q ss_pred ccccccCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccC
Q psy9004 36 DECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 74 (237)
Q Consensus 36 ~d~~~v~~~Gt~~~l~~lv~~~H~~Gi~VilD~v~nh~~ 74 (237)
.|+..+...++.+.+++.++++++.|+++++|+.=-++.
T Consensus 251 AD~vTVH~ea~~~ti~~ai~~akk~GikvgVD~lnp~tp 289 (391)
T PRK13307 251 ADAVVISGLAPISTIEKAIHEAQKTGIYSILDMLNVEDP 289 (391)
T ss_pred CCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEEcCCCCH
Confidence 344445335677889999999999999999996533444
Done!