RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9004
(237 letters)
>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE;
1.70A {Oryza sativa japonica group} PDB: 3amk_A
Length = 755
Score = 311 bits (798), Expect = e-102
Identities = 113/177 (63%), Positives = 135/177 (76%), Gaps = 3/177 (1%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFD---GTQACFFHDGPRGTH 100
GTPE LKYLVD+ H GL VL+DVVHSHAS NV DGLN +D T +FH G RG H
Sbjct: 247 SGTPEDLKYLVDKAHSLGLRVLMDVVHSHASNNVTDGLNGYDVGQNTHESYFHTGDRGYH 306
Query: 101 PLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDE 160
LWDSRLFNY+ EVLRFLLSNLR++++E+ FDGFRFDGVTSMLYH+HG +GF+G+Y E
Sbjct: 307 KLWDSRLFNYANWEVLRFLLSNLRYWMDEFMFDGFRFDGVTSMLYHHHGINKGFTGNYKE 366
Query: 161 YFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLG 217
YF L+ D DA++Y+M+AN +H PE +AEDVSGMP CRPV EGG GFD+RL
Sbjct: 367 YFSLDTDVDAIVYMMLANHLMHKLLPEATIVAEDVSGMPVLCRPVDEGGVGFDFRLA 423
>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta
sandwich, transferase; 2.30A {Escherichia coli} SCOP:
b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*
Length = 617
Score = 149 bits (378), Expect = 6e-42
Identities = 61/176 (34%), Positives = 91/176 (51%), Gaps = 13/176 (7%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPR-GTHPL 102
FGT + +Y +D H AGL V+LD V H + L EFDGT + H PR G H
Sbjct: 201 FGTRDDFRYFIDAAHAAGLNVILDWVPGHFPTDD-FALAEFDGT-NLYEHSDPREGYHQD 258
Query: 103 WDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEY- 161
W++ ++NY EV FL+ N +++E + D R D V SM+Y ++ EG E+
Sbjct: 259 WNTLIYNYGRREVSNFLVGNALYWIERFGIDALRVDAVASMIYRDYSRKEG------EWI 312
Query: 162 ---FGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDY 214
FG + +A+ +L N+ L ++ +T+AE+ + P RP GG GF Y
Sbjct: 313 PNEFGGRENLEAIEFLRNTNRILGEQVSGAVTMAEESTDFPGVSRPQDMGGLGFWY 368
>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis
H37RV, mesophilic human pathogen, RV1326C gene, glycosyl
transferase; 2.33A {Mycobacterium tuberculosis}
Length = 722
Score = 149 bits (379), Expect = 1e-41
Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 13/176 (7%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPR-GTHPL 102
FGTP+ + LVD H+AG+ V++D V +H K+ L FDGT + H P+ G
Sbjct: 309 FGTPDDFRALVDALHQAGIGVIVDWVPAHFPKDA-WALGRFDGT-PLYEHSDPKRGEQLD 366
Query: 103 WDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEY- 161
W + +F++ EV FL++N ++L+E+ DG R D V SMLY ++ EG +
Sbjct: 367 WGTYVFDFGRPEVRNFLVANALYWLQEFHIDGLRVDAVASMLYLDYSRPEG------GWT 420
Query: 162 ---FGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDY 214
G + +A+ +L N H P I+TIAE+ + RP GG GF
Sbjct: 421 PNVHGGRENLEAVQFLQEMNATAHKVAPGIVTIAEESTPWSGVTRPTNIGGLGFSM 476
>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase,
protein-carbohydrate complex, desiccation resistance;
HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP:
b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A*
2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*
Length = 602
Score = 105 bits (263), Expect = 3e-26
Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 14/106 (13%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSH--ASKNVLDGLNEFDGTQACFFHDGPRGTHP 101
+G PE L LVD H+ GL V LDVV++H S N L+ + + +F D
Sbjct: 189 YGRPEDLMALVDAAHRLGLGVFLDVVYNHFGPSGN---YLSSYAPS---YFTDRF---SS 239
Query: 102 LWDSRLFNYSEIEVLRFLLSN-LRWYLEEYQFDGFRFDGVTSMLYH 146
W +Y+E + R++ N W L +Y FDG R D M
Sbjct: 240 AWGM-GLDYAEPHMRRYVTGNARMW-LRDYHFDGLRLDATPYMTDD 283
>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics,
center for structural genomics of infectious diseases,
unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella
enterica subsp}
Length = 618
Score = 102 bits (256), Expect = 3e-25
Identities = 40/177 (22%), Positives = 62/177 (35%), Gaps = 39/177 (22%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDG--LNEFDGTQACFFHDGPRGTHP 101
+GTP+ K +D H GL V+LD+V +H +G L FFH
Sbjct: 199 YGTPDDFKAFIDAAHGYGLSVVLDIVLNHFGP---EGNYLPLLAPA---FFHKER---MT 249
Query: 102 LWDSRLFNYSEIEVLRFLLSN-LRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDE 160
W + Y V R+++ L W L EY DG RFD + +
Sbjct: 250 PWGN-GIAYDVDAVRRYIIEAPLYW-LTEYHLDGLRFDAIDQI----------------- 290
Query: 161 YFGLNVDTDALIYLMVANKFLHDKYPE--IITIAEDVSGMPASCRPVTEG-GTGFDY 214
D+ A L+ + + + + I ED + + +G F
Sbjct: 291 -----EDSSARHVLVEIAQRIREDITDRPIHLTTEDSRNIISLHPRDQDGNAPLFTA 342
>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel,
alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus
solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A*
3vgh_A* 3vgg_A* 1eha_A
Length = 558
Score = 95.8 bits (239), Expect = 6e-23
Identities = 47/175 (26%), Positives = 68/175 (38%), Gaps = 38/175 (21%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSH--ASKNVLDGLNEFDGTQACFFHDGPRGTHP 101
+G PE + LVDE HK GL V+LDVV++H N + + +F + P
Sbjct: 164 YGGPEGFRKLVDEAHKKGLGVILDVVYNHVGPEGN---YMVKLGP----YFSQ--KYKTP 214
Query: 102 LWDSRLFNYSE-IEVLRFLLSN-LRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYD 159
+ F+ +E EV +F+L N W ++EY DGFR V +++
Sbjct: 215 WGLTFNFDDAESDEVRKFILENVEYW-IKEYNVDGFRLSAVHAII--------------- 258
Query: 160 EYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDY 214
DT L +H I IAE P P + G D
Sbjct: 259 -------DTSPKHILEEIADVVHK--YNRIVIAESDLNDPRVVNPKEKCGYNIDA 304
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta
sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1
c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A*
1qi4_A* 2amg_A 1qpk_A*
Length = 527
Score = 66.6 bits (162), Expect = 5e-13
Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 10/107 (9%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSH---ASKNVLDGLNEFDGTQACFFHDGPRGTH 100
+G+ QL+ AG+ VL DVV +H + L G D +
Sbjct: 89 YGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQGFWRNDCADPGNYPN 148
Query: 101 PLWDSRLF-------NYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGV 140
D F N +V +Y GFRFD V
Sbjct: 149 DCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFDFV 195
>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA;
1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB:
2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A
Length = 478
Score = 66.6 bits (163), Expect = 6e-13
Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 18/113 (15%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN----VLDGLNEFDGTQACFFH------ 93
+GT + LK L H+ G+Y+++DVV +H + +D + +FH
Sbjct: 94 YGTADDLKALSSALHERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFSSQDYFHPFCFIQ 153
Query: 94 ---DGPRGTHPLWDSRL-----FNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 138
D + + ++ V + + Y DG R D
Sbjct: 154 NYEDQTQVEDCWLGDNTVSLPDLDTTKDVVKNEWYDWVGSLVSNYSIDGLRID 206
>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A
{Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1
b.71.1.1 c.1.8.1
Length = 680
Score = 65.2 bits (159), Expect = 2e-12
Identities = 25/119 (21%), Positives = 43/119 (36%), Gaps = 25/119 (21%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS------KNVLDGLNEFDG----------T 87
FGT + LVD H G+ V++D +H S + ++ +D
Sbjct: 108 FGTLSDFQRLVDAAHAKGIKVIIDFAPNHTSPASETNPSYMENGRLYDNGTLLGGYTNDA 167
Query: 88 QACFFHDGPRGTHPLWDSRL--------FNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 138
F H+G L D N+ + R+L ++ ++ + DG R D
Sbjct: 168 NMYFHHNGGTTFSSLEDGIYRNLFDLADLNHQNPVIDRYLKDAVKMWI-DMGIDGIRMD 225
>2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP:
b.71.1.1 c.1.8.1
Length = 484
Score = 64.8 bits (158), Expect = 2e-12
Identities = 27/115 (23%), Positives = 40/115 (34%), Gaps = 22/115 (19%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN----VLDGLNEFDGTQACFFHDGPRGT 99
FGT + LK L D H G+Y+++DVV H +D + +FH P
Sbjct: 94 FGTADNLKSLSDALHARGMYLMVDVVPDHMGYAGNGNDVDYSVFDPFDSSSYFH--PYCL 151
Query: 100 HPLWDSRL----------------FNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 138
WD+ + +E V + + Y DG R D
Sbjct: 152 ITDWDNLTMVEDCWEGDTIVSLPDLDTTETAVRTIWYDWVADLVSNYSVDGLRID 206
>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable,
family 13 glycosyl hydrolas; 1.60A
{Thermoanaerobacterium thermosulfurigenorganism_taxid}
SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A*
1ciu_A 1a47_A 1pj9_A* 1cgt_A
Length = 683
Score = 64.5 bits (157), Expect = 3e-12
Identities = 19/119 (15%), Positives = 39/119 (32%), Gaps = 25/119 (21%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVL---------------DGLNEFDGTQ 88
FG+ + L++ H + V++D +H S L +
Sbjct: 113 FGSFTDFQNLINTAHAHNIKVIIDFAPNHTSPASETDPTYAENGRLYDNGTLLGGYTNDT 172
Query: 89 ACFFHDGPRGTHPLWDSRLF---------NYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 138
+FH ++ ++ N + +L S ++ +L + DG R D
Sbjct: 173 NGYFHHYGGTDFSSYEDGIYRNLFDLADLNQQNSTIDSYLKSAIKVWL-DMGIDGIRLD 230
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel,
hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1
c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A*
1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Length = 405
Score = 64.0 bits (156), Expect = 3e-12
Identities = 24/129 (18%), Positives = 42/129 (32%), Gaps = 25/129 (19%)
Query: 33 YLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS---KNVLDGLNEFDGTQA 89
Y +D +G +LK L+ H G+ + D+V +H K+ F+G +
Sbjct: 58 YDIDASK----YGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIYCIFEGGTS 113
Query: 90 ---------CFFHDGPRGTHPLWDSRLF---------NYSEIEVLRFLLSNLRWYLEEYQ 131
D + + + ++ V R L L W +
Sbjct: 114 DGRLDWGPHMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLWLKSDLG 173
Query: 132 FDGFRFDGV 140
FD +R D
Sbjct: 174 FDAWRLDFA 182
>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex,
oligosaccharide, family 13 glycosyl hydrolase,
transglycosylation; HET: GLC; 1.78A {Bacillus circulans}
SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A*
1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A*
2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A
1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...
Length = 686
Score = 63.3 bits (154), Expect = 7e-12
Identities = 19/119 (15%), Positives = 39/119 (32%), Gaps = 25/119 (21%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLD---------------GLNEFDGTQ 88
+GT + L+ H + V++D +H S D L +
Sbjct: 112 YGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDT 171
Query: 89 ACFFHDGPRGTHPLWDSRLF---------NYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 138
FH ++ ++ N++ V +L ++ +L + DG R +
Sbjct: 172 QNLFHHNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMWL-DLGIDGIRMN 229
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus
stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB:
1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Length = 588
Score = 62.8 bits (153), Expect = 1e-11
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 16/119 (13%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLDGLNEFDGTQAC---FFHDGPR 97
FG E LK L+D CH+ G+ V+LD V +H D + ++ H+ P
Sbjct: 219 FGDKETLKTLIDRCHEKGIRVMLDAVFNHCGYEFAPFQDVWKNGESSKYKDWFHIHEFPL 278
Query: 98 GTHPLWDSRLF---------NYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHN 147
T P + F N + EV R+LL +++ E+ DG+R D V + + H
Sbjct: 279 QTEPRPNYDTFAFVPQMPKLNTANPEVKRYLLDVATYWIREFDIDGWRLD-VANEIDHE 336
>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola
(beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A
{Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A*
1mxd_A* 3qgv_A*
Length = 435
Score = 61.0 bits (148), Expect = 4e-11
Identities = 27/118 (22%), Positives = 42/118 (35%), Gaps = 21/118 (17%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSH---ASKNVLDGLNEFDGTQACFFHDGPRGTH 100
FG+ E+L L+ H G+ V+ DVV +H + ++ T G +
Sbjct: 83 FGSKEELVRLIQTAHAYGIKVIADVVINHRAGGDLEWNPFVGDYTWTDFSKVASGKYTAN 142
Query: 101 PL---------WDSRLF------NYSEIEVLRFLLSNLRW---YLEEYQFDGFRFDGV 140
L D F + + +L + YL FDG+RFD V
Sbjct: 143 YLDFHPNELHCCDEGTFGGFPDICHHKEWDQYWLWKSNESYAAYLRSIGFDGWRFDYV 200
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP}
SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Length = 583
Score = 60.1 bits (146), Expect = 8e-11
Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 17/120 (14%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLDGL-NEFDGTQACFFHDGPRGT 99
FG + LK LVD CH+ G+ VLLD V +H+ + +D L N +FH
Sbjct: 215 FGDKDTLKKLVDLCHERGIRVLLDAVFNHSGRTFPPFVDVLKNGEKSKYKDWFHIRSLPL 274
Query: 100 HPLWDSRL------------FNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHN 147
+ N +V +LL +++ E DG+R D V + + H
Sbjct: 275 EVVDGIPTYDTFAFEPLMPKLNTEHPDVKEYLLKAAEYWIRETGIDGWRLD-VANEVSHQ 333
>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL
ABD; 1.70A {Geobacillus stearothermophilus} SCOP:
b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*
Length = 686
Score = 60.2 bits (146), Expect = 1e-10
Identities = 21/126 (16%), Positives = 38/126 (30%), Gaps = 32/126 (25%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVL--------DGLNEFDGTQACFFHDG 95
FG LV++ H+ G+ V++D V +H++ L +F D
Sbjct: 104 FGNWTTFDTLVNDAHQNGIKVIVDFVPNHSTPFKANDSTFAEGGALYNNGTYMGNYFDDA 163
Query: 96 PRGT-HPLWDSRL----------------------FNYSEIEVLRFLLSNLRWYLEEYQF 132
+G H D + + ++L + +
Sbjct: 164 TKGYFHHNGDISNWDDRYEAQWKNFTDPAGFSLADLSQENGTIAQYLTDAAVQLV-AHGA 222
Query: 133 DGFRFD 138
DG R D
Sbjct: 223 DGLRID 228
>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2,
protein structure initiative; 2.00A {Lactobacillus
plantarum}
Length = 449
Score = 59.3 bits (144), Expect = 2e-10
Identities = 39/187 (20%), Positives = 71/187 (37%), Gaps = 39/187 (20%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFH---DGPRGTH 100
+GT K L D H+ G+ V+LD+V++H S + + +F+ DG
Sbjct: 80 YGTLADFKALTDRAHELGMKVMLDIVYNHTSPD-----SVLATEHPEWFYHDADGQLTNK 134
Query: 101 PLWDSRL--FNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHY 158
S + +Y E+ ++ + L ++ + DG+R D
Sbjct: 135 VGDWSDVKDLDYGHHELWQYQIDTLLYWSQF--VDGYRCD------VAPL---------- 176
Query: 159 DEYFGLNVDTDALIYLMVANKFLHDKYPEIITIAEDVSGMPASCRPVTEGGTGFDYRLGR 218
V D + + A K ++ KYPE + +AE +G ++G TG
Sbjct: 177 -------VPLD---FWLEARKQVNAKYPETLWLAE-SAGSGFIEELRSQGYTGLSDSELY 225
Query: 219 PGLDKSF 225
D ++
Sbjct: 226 QAFDMTY 232
>1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif,
hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus
subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A
Length = 422
Score = 59.0 bits (143), Expect = 2e-10
Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 16/112 (14%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGP------- 96
GT ++ K + + G+ V++D V +H + + NE +
Sbjct: 71 LGTEQEFKEMCAAAEEYGIKVIVDAVINHTTFDYAAISNEVKSIPNWTHGNTQIKNWSDR 130
Query: 97 -----RGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSM 143
L+D +N +V +L L L + DGFRFD +
Sbjct: 131 WDVTQNSLLGLYD---WNTQNTQVQSYLKRFLERALNDG-ADGFRFDAAKHI 178
>3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex,
glycosidase, hydrolase; HET: CE6 ACX; 1.65A
{Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A*
1h3g_A
Length = 601
Score = 58.7 bits (142), Expect = 3e-10
Identities = 24/117 (20%), Positives = 39/117 (33%), Gaps = 22/117 (18%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS------KNVL--DGLNEFDGTQACFFHDG 95
+G+ E L E K G+ ++ DVV SH K++ D +N H
Sbjct: 195 YGSNEDFVRLSTEARKRGMGLIQDVVLSHIGKHHWWMKDLPTPDWINYGGKFVPTQHHRV 254
Query: 96 PRGTHPLWDSRLFNY--------------SEIEVLRFLLSNLRWYLEEYQFDGFRFD 138
+ N+ + V +L+ N W++E G R D
Sbjct: 255 AVQDPYAAQADSENFTKGWFVEGMPDLNQTNPLVANYLIQNNIWWIEYAGLSGLRID 311
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase;
2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2
b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A*
1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A*
1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Length = 585
Score = 58.2 bits (141), Expect = 4e-10
Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 18/120 (15%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLDGLNEFDGTQAC---FFHDGPR 97
FG + LVDE H+ G+ ++LD V +HA D L + + ++ F D P
Sbjct: 216 FGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRDVLQKGEQSRYKDWFFIEDFPV 275
Query: 98 GTHPLWDSRLF----------NYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHN 147
+ F EV +L R+++ E DG+R D V + + H
Sbjct: 276 SKTSRTNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWM-EQGIDGWRLD-VANEVDHA 333
>1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A
{Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1
c.1.8.1
Length = 750
Score = 57.0 bits (138), Expect = 1e-09
Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 22/106 (20%)
Query: 50 LKYLVDECHKAGLYVLLDVVHSH-ASKNVLDGLNEFDGTQACFFHDGPRG-------THP 101
+ +V H AG+ V +DVV++H A + T + RG
Sbjct: 275 FQAMVQAFHNAGIKVYMDVVYNHTAEGGTWTSSDPTTATIYSW-----RGLDNATYYELT 329
Query: 102 LWDSRLFNYS---------EIEVLRFLLSNLRWYLEEYQFDGFRFD 138
+ ++ + ++ +L ++ DGFRFD
Sbjct: 330 SGNQYFYDNTGIGANFNTYNTVAQNLIVDSLAYWANTMGVDGFRFD 375
>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes,
hydrolase, glycosidase, neopullu; 2.37A {Nostoc
punctiforme} PDB: 2wcs_A 2wkg_A
Length = 488
Score = 56.6 bits (137), Expect = 1e-09
Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 24/124 (19%)
Query: 33 YLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLDGL-NEFDGTQ 88
Y VD + G E K L+D H+ + V+LD V +H+S+ D L N
Sbjct: 93 YQVDP-----MLGGNEAFKELLDAAHQRNIKVVLDGVFNHSSRGFFFFHDVLENGPHSPW 147
Query: 89 ACFFHDGPRGTHPLWDSRL--------------FNYSEIEVLRFLLSNLRWYLEEYQFDG 134
+F P FN+ EV +++ ++L ++ DG
Sbjct: 148 VNWFKIEGWPLSPYNGEFPANYVGWAGNRALPEFNHDNPEVREYIMEIAEYWL-KFGIDG 206
Query: 135 FRFD 138
+R D
Sbjct: 207 WRLD 210
>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national
project on structural and functional analyses; HET: GLC;
2.30A {Thermus thermophilus}
Length = 475
Score = 54.2 bits (131), Expect = 7e-09
Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 17/111 (15%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN---VLDGL-NEFDGTQACFFH---DGP 96
G E L++L++ H G+ V+LD V +H + + N ++H
Sbjct: 93 LGGNEALRHLLEVAHAHGVRVILDGVFNHTGRGFFAFQHLMENGEQSPYRDWYHVKGFPL 152
Query: 97 RGTHPLWDSRLF---------NYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 138
+ + + V +LL+ ++ + DG+R D
Sbjct: 153 KAYTAHPNYEAWWGNPELPKLKVETPAVREYLLAVAEHWI-RFGVDGWRLD 202
>3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable,
halophilic, N domain, starch binding, hydrolase; HET:
G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB:
3bcd_A* 3bcf_A
Length = 599
Score = 53.0 bits (127), Expect = 2e-08
Identities = 26/148 (17%), Positives = 43/148 (29%), Gaps = 51/148 (34%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSH-----------ASKNVLDGLNEFDGTQACFF 92
+GT +L+ +D H + V D V +H +N D ++ F
Sbjct: 205 YGTKGELENAIDALHNNDIKVYFDAVLNHRMGADYAETVLLDENSRDKPGQYIKAWTGFN 264
Query: 93 HDGPRGTHP--LWDSRLF--------------------------------------NYSE 112
G G + W+ + F +Y
Sbjct: 265 FPGRNGEYSNFTWNGQCFDGTDWDDYSKESGKYLFDEKSWDWTYNWDEDYLMGADVDYEN 324
Query: 113 IEVLRFLLSNLRWYLEEYQFDGFRFDGV 140
V ++ +W + FDGFR D V
Sbjct: 325 EAVQNDVIDWGQWIINNIDFDGFRLDAV 352
>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase,
glycosidase, ISO-amylase glycosyl hydrolase, glycogen
metabolism; 2.25A {Escherichia coli k-12}
Length = 657
Score = 52.6 bits (127), Expect = 3e-08
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 38/112 (33%)
Query: 48 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGP----RG----- 98
++ + + HKAG+ V+LD+V +H++ E D DGP RG
Sbjct: 242 DEFRDAIKALHKAGIEVILDIVLNHSA--------ELD-------LDGPLFSLRGIDNRS 286
Query: 99 ---THPLWDSRLFNYS---------EIEVLRFLLSNLRWYLEEYQFDGFRFD 138
D N++ V+ + + LR+++E DGFRFD
Sbjct: 287 YYWIRE--DGDYHNWTGCGNTLNLSHPAVVDYASACLRYWVETCHVDGFRFD 336
>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase,
cell WALL, peptidoglycan-anchor, secreted; 2.10A
{Streptococcus agalactiae COH1} PDB: 3fax_A*
Length = 877
Score = 52.2 bits (125), Expect = 4e-08
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 31/103 (30%)
Query: 50 LKYLVDECHKAGLYVLLDVVHSH-ASKNVLDG--------LNEFDGTQACFFHDGPRG-- 98
LK L+ + HK G+ V+LDVV++H A + + +NE DG+ + G
Sbjct: 372 LKQLIHDIHKRGMGVILDVVYNHTAKTYLFEDIEPNYYHFMNE-DGS----PRESFGGGR 426
Query: 99 ---THPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 138
TH + R L+ ++++ E++ DGFRFD
Sbjct: 427 LGTTHAM------------SRRVLVDSIKYLTSEFKVDGFRFD 457
>3zss_A Putative glucanohydrolase PEP1A; alpha-glucan biosynthesis,
glycoside hydrolase FA; 1.80A {Streptomyces coelicolor}
PDB: 3zst_A* 3zt5_A* 3zt6_A* 3zt7_A*
Length = 695
Score = 52.2 bits (125), Expect = 5e-08
Identities = 34/207 (16%), Positives = 60/207 (28%), Gaps = 58/207 (28%)
Query: 2 RTNGFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAG 61
T+ G L D+ G+PE + GT + + V E K G
Sbjct: 280 TTHRKGRNNTLSATGDDVGVPWAIGSPEGGHDSIHP-----ALGTLDDFDHFVTEAGKLG 334
Query: 62 LYVLLDVVHSHASKNVL-----DGLNEFDGTQACFFHDGPRGTHPLWDSRLFNYSEI--- 113
L + LD + + + +FH P GT ++ Y +I
Sbjct: 335 LEIALDFALQCSPDHPWVHKHPE-----------WFHHRPDGTIAHAENPPKKYQDIYPI 383
Query: 114 -------EVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNV 166
+ + LR +++ FR D N
Sbjct: 384 AFDADPDGLATETVRILRHWMDH-GVRIFRVD--------------------------NP 416
Query: 167 DTDALIYLMVANKFLHDKYPEIITIAE 193
T + + ++ P++I +AE
Sbjct: 417 HTKPVAFWERVIADINGTDPDVIFLAE 443
>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel,
alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB:
2e8z_A* 2e9b_A*
Length = 718
Score = 52.0 bits (125), Expect = 5e-08
Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 32/105 (30%)
Query: 50 LKYLVDECHKAGLYVLLDVVHSH-ASKNVLDGLNEFDGTQACFFHDGPRGTHP-----LW 103
LK +++ H+ GL V+LDVV +H + + T P
Sbjct: 318 LKQMINTLHQHGLRVILDVVFNHVYKRE----------------NSPFEKTVPGYFFRHD 361
Query: 104 DSRLF-NYS----EIE-----VLRFLLSNLRWYLEEYQFDGFRFD 138
+ N + +I +F+ + ++LEEY DGFRFD
Sbjct: 362 ECGKPSNGTGVGNDIASERRMARKFIADCVVYWLEEYNVDGFRFD 406
>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase;
HET: BGC GLC; 2.25A {Streptococcus pneumoniae}
Length = 1014
Score = 51.4 bits (123), Expect = 8e-08
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 31/103 (30%)
Query: 50 LKYLVDECHKAGLYVLLDVVHSH-ASKNVLDG--------LNEFDGTQACFFHDGPRG-- 98
K L++E HK G+ +LDVV++H A ++ + ++ DGT G
Sbjct: 564 FKNLINEIHKRGMGAILDVVYNHTAKVDLFEDLEPNYYHFMDA-DGT----PRTSFGGGR 618
Query: 99 ---THPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 138
TH + R L+ ++++ ++ Y+ DGFRFD
Sbjct: 619 LGTTHHM------------TKRLLIDSIKYLVDTYKVDGFRFD 649
>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide,
amylase, starch, carbohydrate; 1.65A {Bacillus
acidopullulyticus}
Length = 921
Score = 51.4 bits (123), Expect = 9e-08
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 22/100 (22%)
Query: 50 LKYLVDECHKAGLYVLLDVVHSH-ASKNVLDGLNEFDGTQ-ACFFHDGPRGTHPLWDSRL 107
LK L+ H+ + V +DVV++H V D FD ++ G
Sbjct: 534 LKQLIQSLHQQRIGVNMDVVYNHTFDVMVSD----FDKIVPQYYYRTDSNGN-------Y 582
Query: 108 FNYS----EIE-----VLRFLLSNLRWYLEEYQFDGFRFD 138
N S E +F+L ++ +++ EY DGFRFD
Sbjct: 583 TNGSGCGNEFATEHPMAQKFVLDSVNYWVNEYHVDGFRFD 622
>2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl
hydrolase, glycogen debraching; HET: GLC A16; 2.8A
{Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A
Length = 718
Score = 51.1 bits (123), Expect = 9e-08
Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 36/112 (32%)
Query: 48 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGP----RG----- 98
K +V+E H AG+ V++DVV++H + E + H GP RG
Sbjct: 267 LSFKKMVNELHNAGIEVIIDVVYNHTA--------EGN-------HLGPTLSFRGIDNTA 311
Query: 99 ---THPLWDSRLFNYS---------EIEVLRFLLSNLRWYLEEYQFDGFRFD 138
P +++ V++ +L +LR+++ E DGFRFD
Sbjct: 312 YYMLQPDNKRYYLDFTGTGNTLNLSHPRVIQMVLDSLRYWVTEMHVDGFRFD 363
>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase;
1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*
Length = 714
Score = 50.8 bits (122), Expect = 1e-07
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 35/105 (33%)
Query: 50 LKYLVDECHKAGLYVLLDVVHSH-ASKNVLDG--------LNEFDGTQACFFHDGPRGT- 99
K L++E HK G+ +LDVV++H A ++ + ++ DGT
Sbjct: 257 FKNLINEIHKRGMGAILDVVYNHTAKVDLFEDLEPNYYHFMDA-DGT----PRTS--FGG 309
Query: 100 ------HPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 138
H + R L+ ++++ ++ Y+ DGFRFD
Sbjct: 310 GRLGTTHHM------------TKRLLIDSIKYLVDTYKVDGFRFD 342
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable,
cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus
marinus}
Length = 696
Score = 49.4 bits (118), Expect = 4e-07
Identities = 19/145 (13%), Positives = 43/145 (29%), Gaps = 43/145 (29%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS----------------------KNVLDGL 81
GT E + LV H + ++LD+ H + +
Sbjct: 308 LGTMEDFEKLVQVLHSRKIKIVLDITMHHTNPCNELFVKALREGENSPYWEMFSFLSPPP 367
Query: 82 NEFDGTQACFFHDGPRGTHPLWDSRL-------------------FNYSEIEVLRFLLSN 122
E + + L+ FN+ + + +
Sbjct: 368 KEIVELMLKYIDGEECRSRELYKLDYFRNNKPFYEAFFNIWLMAKFNHDNPRTVDYFIDI 427
Query: 123 LRWYLEEYQFDGFRFDGVTSMLYHN 147
++++++ DGFR D V ++++
Sbjct: 428 TKFWIDK-GIDGFRID-VAMGIHYS 450
Score = 29.4 bits (66), Expect = 1.1
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 6 FGTPEQLKYLVDECHKAGL 24
GT E + LV H +
Sbjct: 308 LGTMEDFEKLVQVLHSRKI 326
>4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase
family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A*
2y5e_A* 2x4b_A
Length = 884
Score = 48.6 bits (116), Expect = 7e-07
Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 27/104 (25%)
Query: 50 LKYLVDECHKAGLYVLLDVVHSH-ASKNVLDGLNEFDGTQ-ACFFHDGPRGT-------- 99
+ +V ++ GL V++DVV++H S + D + G
Sbjct: 381 YRQMVQALNRIGLRVVMDVVYNHLDSSGPCGISSVLDKIVPGYYVRRDTNGQIENSAAMN 440
Query: 100 -----HPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD 138
H + V R ++ +L + Y+ DGFRFD
Sbjct: 441 NTASEHFM------------VDRLIVDDLLNWAVNYKVDGFRFD 472
>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A
{Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A
1ud6_A 1ud8_A 1ud3_A
Length = 480
Score = 46.0 bits (109), Expect = 4e-06
Identities = 26/157 (16%), Positives = 46/157 (29%), Gaps = 22/157 (14%)
Query: 6 FGTPEQLKYLVDEC--------------HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLK 51
+GT QL+ + HK G T V+ ++ +
Sbjct: 77 YGTKAQLERAIGSLKSNDINVYGDVVMNHKMGADFTEAVQAVQVNPTNRWQDISGAYTID 136
Query: 52 Y--LVDECHKAGLYVLLDVVHSHAS------KNVLDGLNEFDGTQACFFHDGPRGTHPLW 103
D + Y H + + + + F T + D G +
Sbjct: 137 AWTGFDFSGRNNAYSDFKWRWFHFNGVDWDQRYQENHIFRFANTNWNWRVDEENGNYDYL 196
Query: 104 DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGV 140
++S EV L W+ +E DG+R D +
Sbjct: 197 LGSNIDFSHPEVQDELKDWGSWFTDELDLDGYRLDAI 233
>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability;
2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1
c.1.8.1
Length = 515
Score = 45.6 bits (108), Expect = 6e-06
Identities = 29/122 (23%), Positives = 44/122 (36%), Gaps = 7/122 (5%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 103
+GT Q + H AG+ V DVV H K DG D + D + +
Sbjct: 78 YGTKAQYLQAIQAAHAAGMQVYADVVFDH--KGGADGTEWVDAVEVNPS-DRNQEISGTY 134
Query: 104 DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD--GVTSMLYHNHGCGEGFSGHYDEY 161
+ + + S+ +W Y FDG +D S +Y G G+ + D
Sbjct: 135 QIQAWTKFDFPGRGNTYSSFKWRW--YHFDGVDWDESRKLSRIYKFRGIGKAWDWEVDTE 192
Query: 162 FG 163
G
Sbjct: 193 NG 194
Score = 37.1 bits (86), Expect = 0.003
Identities = 27/159 (16%), Positives = 43/159 (27%), Gaps = 24/159 (15%)
Query: 6 FGTPEQLKYLVDECHKAGL--------------FGTPEQLKYLVDECHKAGLFGTPEQLK 51
+GT Q + H AG+ GT V+ + Q++
Sbjct: 78 YGTKAQYLQAIQAAHAAGMQVYADVVFDHKGGADGTEWVDAVEVNPSDRNQEISGTYQIQ 137
Query: 52 YLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNY- 110
+ +D ++ F + D+ NY
Sbjct: 138 AWTKFDFPGRGNTYSSFKWRWYHFDGVDWDESRKLSRIYKFRGIGKAWDWEVDTENGNYD 197
Query: 111 ---------SEIEVLRFLLSNLRWYLEEYQFDGFRFDGV 140
EV+ L S +WY+ DGFR D V
Sbjct: 198 YLMYADLDMDHPEVVTELKSWGKWYVNTTNIDGFRLDAV 236
>2fhf_A Pullulanase; multiple domain, beta-alpha-barrel,
alpha-amylase-family, complex with maltotetraose,
hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP:
b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A*
2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A*
Length = 1083
Score = 45.4 bits (107), Expect = 7e-06
Identities = 16/100 (16%), Positives = 37/100 (37%), Gaps = 17/100 (17%)
Query: 50 LKYLVDECHK-AGLYVLLDVVHSH-ASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRL 107
+ ++ + G+ V++DVV++H + D + D ++ +
Sbjct: 584 FRTMIQAIKQDLGMNVIMDVVYNHTNAAGPTDRTSVLDKIVPWYYQRLNE------TTGS 637
Query: 108 FNYS---------EIEVLRFLLSNLRWYLEEYQFDGFRFD 138
+ + + +L + +Y+ DGFRFD
Sbjct: 638 VESATCCSDSAPEHRMFAKLIADSLAVWTTDYKIDGFRFD 677
>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase,
alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A
{Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A*
2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*
Length = 485
Score = 45.3 bits (107), Expect = 7e-06
Identities = 25/128 (19%), Positives = 45/128 (35%), Gaps = 18/128 (14%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 103
+GT QL+ V G+ V DVV +H G + + +A + R
Sbjct: 79 YGTRSQLQAAVTSLKNNGIQVYGDVVMNHKG-----GADATEMVRAVEVNPNNRNQEVTG 133
Query: 104 DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGV--------TSMLYHNHGCGEGFS 155
+ + ++ RF +++ + FDGV + +Y G G+ +
Sbjct: 134 EYTIEAWT-----RFDFPGRGNTHSSFKWRWYHFDGVDWDQSRRLNNRIYKFRGHGKAWD 188
Query: 156 GHYDEYFG 163
D G
Sbjct: 189 WEVDTENG 196
Score = 39.1 bits (91), Expect = 8e-04
Identities = 24/163 (14%), Positives = 40/163 (24%), Gaps = 31/163 (19%)
Query: 6 FGTPEQLKYLVDECHKAGL--------------FGTPEQLKYLVDECHKAGLFGTPEQLK 51
+GT QL+ V G+ T V+ ++ ++
Sbjct: 79 YGTRSQLQAAVTSLKNNGIQVYGDVVMNHKGGADATEMVRAVEVNPNNRNQEVTGEYTIE 138
Query: 52 YLV--DECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRL-- 107
D + + H D + + G W+
Sbjct: 139 AWTRFDFPGRGNTHSSFKWRWYHFDGVDWD---QSRRLNNRIYKFRGHGKAWDWEVDTEN 195
Query: 108 ----------FNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGV 140
+ EV+ L + WY DGFR D V
Sbjct: 196 GNYDYLMYADIDMDHPEVVNELRNWGVWYTNTLGLDGFRIDAV 238
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase;
HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis}
SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A*
1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Length = 448
Score = 43.9 bits (103), Expect = 2e-05
Identities = 31/223 (13%), Positives = 60/223 (26%), Gaps = 39/223 (17%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN-------VLDGLNEFDGTQACFFHD-G 95
G Q +V+ C AG+ + +D + +H + G F FH+
Sbjct: 61 GGNRAQFIDMVNRCSAAGVDIYVDTLINHMAAGSGTGTAGNSFGNKSFPIYSPQDFHESC 120
Query: 96 PRGTHPLWDSRL------------FNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD----- 138
+ R + + V + + + L+ GFRFD
Sbjct: 121 TINNSDYGNDRYRVQNCELVGLADLDTASNYVQNTIAAYIND-LQAIGVKGFRFDASKHV 179
Query: 139 ------GVTSMLYHNHGC-GEGFSG-----HYDEYFGLNVDTDALIYLMVANKFLHDKYP 186
+ + + + E EY + T+ + N F +
Sbjct: 180 AASDIQSLMAKVNGSPVVFQEVIDQGGEAVGASEYLSTGLVTEFKYSTELGNTFRNGSLA 239
Query: 187 EIITIAEDVSGMPASCRPVTEGGTGFDYRLGRPGLDKSFYGNA 229
+ E G S V + R + + +
Sbjct: 240 WLSNFGEGW-GFMPSSSAVVFVDNHDNQRGHGGAGNVITFEDG 281
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 2e-05
Identities = 45/302 (14%), Positives = 81/302 (26%), Gaps = 92/302 (30%)
Query: 3 TNGFGTPEQLKYLVDECHK------AGLFGTPEQ----------LKYLVDECHKAGLFGT 46
T F QL+ ++ +K G E L Y+ + +
Sbjct: 24 TASFFIASQLQ---EQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQF 80
Query: 47 PEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGT----------QACFFHDGP 96
+ L + E Y+ + +H+ A+K L N+ A P
Sbjct: 81 DQVLNLCLTEFENC--YLEGNDIHALAAK--LLQENDTTLVKTKELIKNYITARIMAKRP 136
Query: 97 RGTHPLWDSRLFNYSEIEVLRFLL-----SNLRWYLEEYQ--FDGFR------FDGVTSM 143
+S LF + + N Y EE + + +
Sbjct: 137 FDKKS--NSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAET 194
Query: 144 LYHNHGCGEGFSGHYDEYFGLNV-----------DTDALIYLMVANKFLHDKYPEI---- 188
L + + GLN+ D D L+ + ++ P I
Sbjct: 195 LSELIRTTLDAEKVFTQ--GLNILEWLENPSNTPDKDYLLSIPIS-------CPLIGVIQ 245
Query: 189 ---ITIAEDVSGM-PASCRPVTEGGTGFDYRLGRPGL-----------DKSFYGNASLGL 233
+ + G P R +G TG GL +SF+ + +
Sbjct: 246 LAHYVVTAKLLGFTPGELRSYLKGATGHS-----QGLVTAVAIAETDSWESFFVSVRKAI 300
Query: 234 EI 235
+
Sbjct: 301 TV 302
Score = 29.6 bits (66), Expect = 1.1
Identities = 31/169 (18%), Positives = 49/169 (28%), Gaps = 53/169 (31%)
Query: 3 TNGFGTP-----------EQLKYLVDECHK---------AGLF---------GTPEQLKY 33
N G P EQ++ V++ + L G P+ L
Sbjct: 329 ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG 388
Query: 34 LVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDV---VHSH----ASKNVLDGLN---- 82
L KA +Q + E L V HSH AS + L
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNV 448
Query: 83 EFDGTQACF--FH--DGPRGTHPLWDSRLFNYSEIEVL-RFLLSN-LRW 125
F+ + DG D R+ + S E + ++ ++W
Sbjct: 449 SFNAKDIQIPVYDTFDGS-------DLRVLSGSISERIVDCIIRLPVKW 490
>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase,
hydrolase, metal-binding, secreted; 1.40A {Bacillus
amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A
1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A
Length = 483
Score = 43.7 bits (103), Expect = 3e-05
Identities = 22/129 (17%), Positives = 41/129 (31%), Gaps = 21/129 (16%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVV-------HSHASKNVLDGLNEFDGTQACFFHDGP 96
+GT +L+ + H + V DVV + ++ + +
Sbjct: 75 YGTKSELQDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAVEVNPANRNQETSEEYQIK 134
Query: 97 RGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFD--GVTSMLYHNHGCGEGF 154
T + R Y S+ +W+ Y FDG +D S ++ G G+ +
Sbjct: 135 AWTDFRFPGRGNTY----------SDFKWHW--YHFDGADWDESRKISRIFKFRGEGKAW 182
Query: 155 SGHYDEYFG 163
G
Sbjct: 183 DWEVSSENG 191
Score = 39.0 bits (91), Expect = 8e-04
Identities = 26/159 (16%), Positives = 42/159 (26%), Gaps = 24/159 (15%)
Query: 6 FGTPEQLKYLVDEC--------------HKAGLFGTPEQLKYLVDECHKAGLFGTPEQLK 51
+GT +L+ + HKAG T + V+ ++ Q+K
Sbjct: 75 YGTKSELQDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAVEVNPANRNQETSEEYQIK 134
Query: 52 YLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRL---- 107
D D + D ++ F + S
Sbjct: 135 AWTDFRFPGRGNTYSDFKWHWYHFDGADWDESRKISRIFKFRGEGKAWDWEVSSENGNYD 194
Query: 108 ------FNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGV 140
+Y +V+ WY E DGFR D
Sbjct: 195 YLMYADVDYDHPDVVAETKKWGIWYANELSLDGFRIDAA 233
>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A
{Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1
c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A*
2d0g_A* 2d0h_A* 1izk_A
Length = 637
Score = 43.6 bits (103), Expect = 3e-05
Identities = 26/141 (18%), Positives = 44/141 (31%), Gaps = 28/141 (19%)
Query: 44 FGTPEQLKYLVDECHKAGLY----VLLDVVHSHASKN--VLDGLNEFDGTQACFFHDGPR 97
FG L+ L+++ H ++LD V +H + D N F A P
Sbjct: 235 FGDNSTLQTLINDIHSTANGPKGYLILDGVFNHTGDSHPWFDKYNNFSSQGAYESQSSPW 294
Query: 98 GTHPLWDSRLFNY----------------SEIEVLRFLLSNL-----RWYLEEYQFDGFR 136
+ + + +Y S V + +N + Y DG+R
Sbjct: 295 YNYYTFYTWPDSYASFLGFNSLPKLNYGNSGSAVRGVIYNNSNSVAKTYLNPPYSVDGWR 354
Query: 137 FDGVTSMLYHNHGCGEGFSGH 157
D + N G + H
Sbjct: 355 LD-AAQYVDANGNNGSDVTNH 374
>1gjw_A Maltodextrin glycosyltransferase; alpha-amylase,
maltosyltransferase; HET: MAL GLC; 2.1A {Thermotoga
maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1gju_A*
Length = 637
Score = 42.9 bits (100), Expect = 5e-05
Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 103
F E+ K V+ CH G+ V+LD + A+++ D + T P
Sbjct: 178 FKVDEEFKAFVEACHILGIRVILDFIPRTAARDSDLIREHPDWFYWIKVEELADYTPPRA 237
Query: 104 DSRLFNYSEIEVLRFLLS--NLRWYLEEYQFD 133
+ F + + L + + N++ +L+++
Sbjct: 238 EELPFKVPDEDELEIIYNKENVKRHLKKFTLP 269
Score = 28.3 bits (62), Expect = 2.6
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 6 FGTPEQLKYLVDECHKAGL 24
F E+ K V+ CH G+
Sbjct: 178 FKVDEEFKAFVEACHILGI 196
>3aie_A Glucosyltransferase-SI; beta-alpha-barrels; HET: MES; 2.10A
{Streptococcus mutans} PDB: 3aic_A* 3aib_A*
Length = 844
Score = 41.7 bits (97), Expect = 1e-04
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 74
+GT + L + H G+ V+ D V
Sbjct: 689 YGTADDLVKAIKALHSKGIKVMADWVPDQMY 719
Score = 29.7 bits (66), Expect = 1.0
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 6 FGTPEQLKYLVDECHKAGL 24
+GT + L + H G+
Sbjct: 689 YGTADDLVKAIKALHSKGI 707
Score = 27.1 bits (59), Expect = 6.4
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 116 LRFLLSNLRWYL--EEYQFDGFRFDGV 140
L FL++ Y + FD R D V
Sbjct: 210 LHFLMNFGNIYANDPDANFDSIRVDAV 236
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like,
antiparallel beta-sheet, greek terminal domain,
extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Length = 424
Score = 41.3 bits (97), Expect = 1e-04
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 43 LFGTPEQLKYLVDECHKAGLYVLLDVVHSHASKN 76
FG+ E L+ K + V+LD+ ++ +N
Sbjct: 77 NFGSKEDFDSLLQSAKKKSIRVILDLTPNYRGEN 110
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.4 bits (96), Expect = 2e-04
Identities = 32/205 (15%), Positives = 65/205 (31%), Gaps = 53/205 (25%)
Query: 8 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLD 67
+ +V++ HK LV++ K P YL + Y L
Sbjct: 400 IKSDVMVVVNKLHK----------YSLVEKQPKESTISIPSI--YLELKVKLENEYAL-- 445
Query: 68 VVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRLFNY-----------SEIEVL 116
H ++++D N F D P D +++ + +
Sbjct: 446 --H----RSIVDHYN----IPKTFDSDDL--IPPYLDQYFYSHIGHHLKNIEHPERMTLF 493
Query: 117 RFLLSNLRWYLEEYQFDGFRFDGVTSML--------YHNHGCGEGFSGHYDEYFGLNVDT 168
R + + R+ ++ + D ++ S+L Y + C Y+
Sbjct: 494 RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN--DPKYERLVN----- 546
Query: 169 DALIYLM-VANKFLHDKYPEIITIA 192
L +L + + KY +++ IA
Sbjct: 547 AILDFLPKIEENLICSKYTDLLRIA 571
Score = 32.5 bits (73), Expect = 0.11
Identities = 24/131 (18%), Positives = 40/131 (30%), Gaps = 28/131 (21%)
Query: 8 TPEQ-LKYLVDECHKAGLFGT--PEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYV 64
+PE L+ L ++ T + + H E + L + ++ L V
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI----QAELRRLLKSKPYENCLLV 249
Query: 65 LLDVVHSHASKNVLDGLNEFDGTQAC------------FFHDGPRGTHPLWDSRLFNYSE 112
LL+V + + F+ + C F TH D +
Sbjct: 250 LLNV----QNAKAWNA---FNLS--CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 113 IEVLRFLLSNL 123
EV LL L
Sbjct: 301 DEVKSLLLKYL 311
>1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism,
4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio
molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A
1viw_A*
Length = 471
Score = 39.0 bits (90), Expect = 8e-04
Identities = 21/124 (16%), Positives = 35/124 (28%), Gaps = 28/124 (22%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF-----------DGTQACFF 92
G + C+ AG+ + +D V +H + G + + F
Sbjct: 71 SGDESAFTDMTRRCNDAGVRIYVDAVINHMTGMNGVGTSGSSADHDGMNYPAVPYGSGDF 130
Query: 93 H---------DGPRGTH----PLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDG 139
H D + L D N V L+ + + + GFR D
Sbjct: 131 HSPCEVNNYQDADNVRNCELVGLRD---LNQGSDYVRGVLIDYMNH-MIDLGVAGFRVDA 186
Query: 140 VTSM 143
M
Sbjct: 187 AKHM 190
Score = 27.0 bits (59), Expect = 5.8
Identities = 4/20 (20%), Positives = 7/20 (35%)
Query: 6 FGTPEQLKYLVDECHKAGLF 25
G + C+ AG+
Sbjct: 71 SGDESAFTDMTRRCNDAGVR 90
>3ucq_A Amylosucrase; thermostability, amylose synthesis, sucrose
isomerization, beta/alpha-barrel, carbohydrate binding,
transferase; 1.97A {Deinococcus geothermalis} PDB:
3uer_A*
Length = 655
Score = 38.7 bits (90), Expect = 0.001
Identities = 25/193 (12%), Positives = 50/193 (25%), Gaps = 61/193 (31%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS------KNVLDGLNEF--------DGTQA 89
GT + L L G+ ++LD+V +H + + G ++ D
Sbjct: 157 LGTMDDLSALARALRGRGISLVLDLVLNHVAREHAWAQKARAGDPKYRAYFHLFPDRRGP 216
Query: 90 CFFHDGPRGTHPL-------WDSRL------------------FNYSEIEVLRFLLSNLR 124
F P WD + N++ +V + +
Sbjct: 217 DAFEATLPEIFPDFAPGNFSWDEEIGEGEGGWVWTTFNSYQWDLNWANPDVFLEFVDIIL 276
Query: 125 WYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNV----DTDALIYLMVANKF 180
+ + FR D + + + G + + L +
Sbjct: 277 YLANR-GVEVFRLDAIAFIW---------------KRLGTDCQNQPEVHHLTRAL--RAA 318
Query: 181 LHDKYPEIITIAE 193
P + AE
Sbjct: 319 ARIVAPAVAFKAE 331
>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A
{Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1
Length = 488
Score = 37.2 bits (87), Expect = 0.003
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 74
+GT E LV+ H+ G+ V++D+ +H S
Sbjct: 78 YGTLEDFHKLVEAAHQRGIKVIIDLPINHTS 108
>3czg_A Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; 1.80A
{Xanthomonas axonopodis PV} PDB: 3cze_A* 3czl_A* 3czk_A*
2wpg_A
Length = 644
Score = 37.2 bits (86), Expect = 0.004
Identities = 25/186 (13%), Positives = 45/186 (24%), Gaps = 51/186 (27%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS------KNVLDGLNEF--------DGTQA 89
G+ + L L +AG+ + D V +H + + G + D T
Sbjct: 152 LGSNDDLVALTSRLREAGISLCADFVLNHTADDHAWAQAARAGDARYLDYYHHFADRTVP 211
Query: 90 CFFHDGPRGTHPL-------WDSRL--------------FNYSEIEVLRFLLSNLRWYLE 128
+ P W N+S V + +
Sbjct: 212 DRYEATLGQVFPHTAPGNFTWVDDTAQWMWTTFYPYQWDLNWSNPAVFGDMALAMLRLAN 271
Query: 129 EYQFDGFRFDGVTSML-YHNHGCGEGFSGHYDEYFGLNVDTDALIYLMVANKFLHDKYPE 187
+ FR D + C + E L+ + P
Sbjct: 272 L-GVEAFRLDSTAYLWKRIGTDC-----MNQSE-------AHTLLVAL--RAVTDIVAPA 316
Query: 188 IITIAE 193
++ AE
Sbjct: 317 VVMKAE 322
>1hx0_A Alpha amylase (PPA); inhibitor, carbohydrate, pancreas, hydrolase;
HET: GLC AC1 BGC MAL; 1.38A {Sus scrofa} SCOP: b.71.1.1
c.1.8.1 PDB: 1wo2_A* 1ua3_A* 1kxq_A 1kxt_A 1kxv_A
1jfh_A* 1vah_A* 1ppi_A* 3l2m_A* 3l2l_A* 1dhk_A* 1ose_A*
1pig_A* 1pif_A* 1bvn_P 3oli_A* 3old_A* 3olg_A* 3ole_A*
3ij8_A* ...
Length = 496
Score = 36.3 bits (83), Expect = 0.006
Identities = 22/134 (16%), Positives = 35/134 (26%), Gaps = 38/134 (28%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQAC------------- 90
G + + +V C+ G+ + +D V +H + C
Sbjct: 73 SGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGNREFPAVPYS 132
Query: 91 --FFHDGPRGTH-------------------PLWDSRLFNYSEIEVLRFLLSNLRWYLEE 129
F+DG T L D + V + L L +
Sbjct: 133 AWDFNDGKCKTASGGIESYNDPYQVRDCQLVGLLD---LALEKDYVRSMIADYLNK-LID 188
Query: 130 YQFDGFRFDGVTSM 143
GFR D M
Sbjct: 189 IGVAGFRIDASKHM 202
>1iv8_A Maltooligosyl trehalose synthase; beta alpha barrel,
intramolecular transglucosylation, isomerase; HET: MLZ
MLY; 1.90A {Sulfolobus acidocaldarius} SCOP: b.71.1.1
c.1.8.1
Length = 720
Score = 36.4 bits (84), Expect = 0.006
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 74
G ++ + L++ H GL ++ D+V +H +
Sbjct: 62 LGGEKEYRRLIETAHTIGLGIIQDIVPNHMA 92
Score = 28.0 bits (62), Expect = 3.4
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 6 FGTPEQLKYLVDECHKAGL 24
G ++ + L++ H GL
Sbjct: 62 LGGEKEYRRLIETAHTIGL 80
Score = 28.0 bits (62), Expect = 3.4
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 25 FGTPEQLKYLVDECHKAGL 43
G ++ + L++ H GL
Sbjct: 62 LGGEKEYRRLIETAHTIGL 80
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose,
(beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga
maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Length = 441
Score = 36.4 bits (85), Expect = 0.006
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 43 LFGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 74
+G+ + K +++ H +G+ V+LD+ H
Sbjct: 65 EYGSEREFKEMIEAFHDSGIKVVLDLPIHHTG 96
>3hje_A 704AA long hypothetical glycosyltransferase; trehalose
biosynthesis, maltooligoside trehalose synthase (M
family 13 glycoside hydrolases; 1.90A {Sulfolobus
tokodaii str}
Length = 704
Score = 36.2 bits (84), Expect = 0.007
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 74
G E+ L+DE GL ++ D+V +H +
Sbjct: 60 LGGEEEYIRLIDEAKSKGLGIIQDIVPNHMA 90
Score = 27.4 bits (61), Expect = 4.8
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 6 FGTPEQLKYLVDECHKAGL 24
G E+ L+DE GL
Sbjct: 60 LGGEEEYIRLIDEAKSKGL 78
Score = 27.4 bits (61), Expect = 4.8
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 25 FGTPEQLKYLVDECHKAGL 43
G E+ L+DE GL
Sbjct: 60 LGGEEEYIRLIDEAKSKGL 78
>2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase;
2.20A {Streptococcus mutans} PDB: 2zid_A*
Length = 543
Score = 35.6 bits (83), Expect = 0.013
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 74
FG + L+ + G+ +++D+V +H S
Sbjct: 75 FGNMADMDNLLTQAKMRGIKIIMDLVVNHTS 105
>1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel
glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1
c.1.8.1
Length = 558
Score = 35.2 bits (82), Expect = 0.014
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 74
FGT E L+ E H+ + +++D+V +H S
Sbjct: 75 FGTMEDWDELLHEMHERNMKLMMDLVVNHTS 105
>2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle,
hydrolase; 2.00A {Geobacillus SP}
Length = 555
Score = 35.2 bits (82), Expect = 0.016
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 74
FGT + L+ + H+ GL V+LD+V +H S
Sbjct: 75 FGTMDDFDELLAQAHRRGLKVILDLVINHTS 105
>1g5a_A Amylosucrase; glycosyltransferase, glycoside hydrolase,
(beta-alpha)8 barrel; HET: EPE; 1.40A {Neisseria
polysaccharea} SCOP: b.71.1.1 c.1.8.1 PDB: 1jg9_A*
1mw1_A* 1mw2_A* 1mw3_A* 3ueq_A* 1jgi_A* 1mvy_A* 1mw0_A*
1s46_A* 1zs2_A*
Length = 628
Score = 35.2 bits (81), Expect = 0.016
Identities = 32/191 (16%), Positives = 51/191 (26%), Gaps = 62/191 (32%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS------KNVLDGLNEFD------------ 85
GT L+ ++ H+AG+ ++D + +H S + G FD
Sbjct: 159 LGTIGDLREVIAALHEAGISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMP 218
Query: 86 ------------GTQACFFHDGPRGTHPL-------WDSRLFNYSEIEVLRFLLSNLRWY 126
F G WD NYS V R + + +
Sbjct: 219 DQYDRTLREIFPDQHPGGFSQLEDGRWVWTTFNSFQWD---LNYSNPWVFRAMAGEMLFL 275
Query: 127 LEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDEYFGLNV----DTDALIYLMVANKFLH 182
D R D V + + G + ALI N +
Sbjct: 276 ANL-GVDILRMDAVAFIW---------------KQMGTSCENLPQAHALIRAF--NAVMR 317
Query: 183 DKYPEIITIAE 193
P + +E
Sbjct: 318 IAAPAVFFKSE 328
>3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A
{Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A*
3axh_A*
Length = 589
Score = 34.9 bits (81), Expect = 0.017
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 74
+GT E L+++ HK G+ + D+V +H S
Sbjct: 84 YGTNEDCFALIEKTHKLGMKFITDLVINHCS 114
>3k8k_A Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, beta-sandwich,
membrane protein; 2.20A {Bacteroides thetaiotaomicron}
PDB: 3k8m_A* 3k8l_A*
Length = 669
Score = 35.1 bits (81), Expect = 0.017
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 74
GT LV E H G+ + LD V +H
Sbjct: 103 LGTESDFDRLVTEAHNRGIKIYLDYVMNHTG 133
>1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization,
isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1
Length = 570
Score = 34.8 bits (81), Expect = 0.018
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 74
+GT E LV E K + +++DVV +H S
Sbjct: 89 YGTMEDFDSLVAEMKKRNMRLMIDVVINHTS 119
>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family,
(beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila}
PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A*
3gbe_A* 3gbd_A*
Length = 557
Score = 34.8 bits (81), Expect = 0.018
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSHAS 74
+GT E L+ E K G+ +++DVV +H+S
Sbjct: 76 YGTMEDFDRLMAELKKRGMRLMVDVVINHSS 106
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, TIM barrel;
2.30A {Alicyclobacillus acidocaldarius subsp}
Length = 281
Score = 33.2 bits (76), Expect = 0.048
Identities = 15/102 (14%), Positives = 31/102 (30%), Gaps = 3/102 (2%)
Query: 10 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVV 69
+++ + E G+ E + + + LK + + L+D
Sbjct: 122 RRIRQVAVELLPLGMRVGLEYVGPHHLRHRRYPFVQSLADLKTFWEAIGAPNVGALVDSY 181
Query: 70 HSHASKNVLDGLNEFDGTQACFFH--DGPRGTHPLWDS-RLF 108
H + + D L + + + H D D RL
Sbjct: 182 HWYTAGEHEDDLAQLPPEKVVYVHINDTRDAPEDAHDGKRLL 223
>1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5,
thermomonospora fusca; 1.50A {Thermobifida fusca} SCOP:
c.1.8.3 PDB: 2man_A* 3man_A*
Length = 302
Score = 33.2 bits (76), Expect = 0.063
Identities = 6/27 (22%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 47 PEQLKYLVDECHKAGLYVLLDVVHSHA 73
P + ++ C + L +L+ VH
Sbjct: 64 PSDVANVISLCKQNRLICMLE-VHDTT 89
>2cks_A Endoglucanase E-5; carbohydrate metabolism, polysaccharide
degradation, glycoside hydrolase family 5, hydrolase,
glycosidase; HET: BEN; 1.6A {Thermobifida fusca} PDB:
2ckr_A*
Length = 306
Score = 32.9 bits (75), Expect = 0.065
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 48 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF 84
+++ L+D GLYV++D H + L+
Sbjct: 80 DRMHQLIDMATARGLYVIVD-WHILTPGDPHYNLDRA 115
>1ceo_A Cellulase CELC; glycosyl hydrolase, family A/5 of glycosyl
hydrolases, cellulose degradation; 1.90A {Clostridium
thermocellum} SCOP: c.1.8.3 PDB: 1cen_A 1cec_A
Length = 343
Score = 32.6 bits (74), Expect = 0.097
Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 21/76 (27%)
Query: 47 PEQLKYL---VDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 103
+ L Y+ ++ C K L ++LD+ H G + F P
Sbjct: 65 EDGLSYIDRCLEWCKKYNLGLVLDMHH-------------APGYRFQDFKTSTLFEDPNQ 111
Query: 104 DSRLFNYSEIEVLRFL 119
R +++ RFL
Sbjct: 112 QKRF-----VDIWRFL 122
>2p9b_A Possible prolidase; protein structure initiative II, PSI-2,
amidohydrolase, structural genomics; 1.70A
{Bifidobacterium longum NCC2705} SCOP: b.92.1.10
c.1.9.17
Length = 458
Score = 32.4 bits (74), Expect = 0.13
Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 46 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL 81
+ EQ++ + DE H+ G+ V H+ + + V L
Sbjct: 225 SVEQMRAICDEAHQYGVIV---GAHAQSPEGVRRSL 257
>3pzt_A Endoglucanase; alpha/beta barrel, glycosyl hydrolase, cellulose
binding, HY; 1.97A {Bacillus subtilis subsp} PDB: 3pzu_A
3pzv_A
Length = 327
Score = 31.8 bits (72), Expect = 0.19
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 48 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF 84
++K V+ + G+YV++D H N +
Sbjct: 105 NKVKEAVEAAKELGIYVIID-WHILNDGNPNQNKEKA 140
>3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural
genomics, protein structure initiative, PSI; 2.63A
{Unidentified} PDB: 3lwy_A* 3n2c_A*
Length = 423
Score = 31.6 bits (72), Expect = 0.19
Identities = 7/37 (18%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 46 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLN 82
+ ++++ +VDE A YV + H++ + + +
Sbjct: 210 SEDEIRAIVDEAEAANTYV---MAHAYTGRAIARAVR 243
>3gnh_A L-lysine, L-arginine carboxypeptidase CC2672; N-methyl phosphonate
derivative of L- arginine, hydrolase; HET: KCX M3R;
1.70A {Caulobacter crescentus CB15} PDB: 3mtw_A*
Length = 403
Score = 31.5 bits (72), Expect = 0.19
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 46 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLN 82
T E++K +VDE H AG+ V H+H + + + +
Sbjct: 205 TYEEMKAVVDEAHMAGIKV---AAHAHGASGIREAVR 238
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A
{Bacillus}
Length = 345
Score = 31.4 bits (71), Expect = 0.21
Identities = 3/37 (8%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 48 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF 84
+ ++ +++ + + +++ VH ++ L+
Sbjct: 87 DTVREVIELAEQNKMVAVVE-VHDATGRDSRSDLDRA 122
>3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A
{Leuconostoc mesenteroides} PDB: 3tto_A*
Length = 1108
Score = 32.0 bits (72), Expect = 0.21
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 45 GTPEQLKYLVDECHKAGLYVLLDVVHSH 72
GT L+ + H A + V+ DVV +
Sbjct: 910 GTDGDLRATIQALHHANMQVMADVVDNQ 937
>1wky_A Endo-beta-1,4-mannanase; TIM barrel, catalytic domain, CBM,
hydrolase; 1.65A {Bacillus SP} SCOP: b.18.1.31 c.1.8.3
Length = 464
Score = 31.2 bits (70), Expect = 0.25
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 48 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF 84
+ ++ L+ L +L+ VH + + LN
Sbjct: 72 QTVRNLISLAEDNNLVAVLE-VHDATGYDSIASLNRA 107
>1g01_A Endoglucanase; alpha/beta barrel, TIM barrel, hydrolase; 1.90A
{Bacillus SP} SCOP: c.1.8.3 PDB: 1g0c_A*
Length = 364
Score = 31.1 bits (70), Expect = 0.28
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 48 EQLKYLVDECHKAGLYVLLDVVHSHA----SKNVLDGLNEFDGTQACFFHDGPRGTHPLW 103
+ + ++ + +YV++D H HA +V G +F A + D P+ + +W
Sbjct: 90 DLVYEGIELAFEHDMYVIVD-WHVHAPGDPRADVYSGAYDFFEEIADHYKDHPKNHYIIW 148
Query: 104 DSRLFN 109
+ L N
Sbjct: 149 E--LAN 152
>1vjz_A Endoglucanase; TM1752, structural genomics, JCSG, PSI, prote
structure initiative, joint center for structural
genomics; 2.05A {Thermotoga maritima} SCOP: c.1.8.3
Length = 341
Score = 31.1 bits (70), Expect = 0.30
Identities = 3/38 (7%), Positives = 16/38 (42%)
Query: 48 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFD 85
E++ ++ K G+++ + + + + + +
Sbjct: 77 EKIDRVIFWGEKYGIHICISLHRAPGYSVNKEVEEKTN 114
>2jep_A Xyloglucanase; family 5, plant cell WALL, hydrolase; 1.4A
{Paenibacillus pabuli} PDB: 2jeq_A*
Length = 395
Score = 30.9 bits (69), Expect = 0.31
Identities = 6/25 (24%), Positives = 15/25 (60%)
Query: 48 EQLKYLVDECHKAGLYVLLDVVHSH 72
+++ +VD + GLYV++++
Sbjct: 110 NRIQQVVDYAYNEGLYVIINIHGDG 134
>3aof_A Endoglucanase; glycosyl hydrolase family 5, cellulase, biofuel,
hyperthermo hydrolase; HET: BMA; 1.29A {Thermotoga
maritima} PDB: 3amg_A* 3amc_A 3amd_A 3mmu_A 3mmw_A
3azs_A* 3azr_A* 3azt_A*
Length = 317
Score = 30.6 bits (69), Expect = 0.35
Identities = 6/29 (20%), Positives = 16/29 (55%)
Query: 48 EQLKYLVDECHKAGLYVLLDVVHSHASKN 76
+++ +++ K GL V++++ H N
Sbjct: 74 KRVDEVINGALKRGLAVVINIHHYEELMN 102
>3vmn_A Dextranase; TIM barrel, immunoglobrin fold, greek-KEY-motif,
glycoside H family 66, hydrolase; 1.60A {Streptococcus
mutans} PDB: 3vmo_A* 3vmp_A*
Length = 643
Score = 31.0 bits (69), Expect = 0.39
Identities = 26/178 (14%), Positives = 51/178 (28%), Gaps = 29/178 (16%)
Query: 50 LKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFD---------GTQACFFHDGPRGTH 100
+K LV+ H+ G +L + + N L + + Q
Sbjct: 193 VKALVNRVHQTGAVAMLYNMILAQNANETAVLPDTEYIYNYETGGYGQNGQVMTYSIDDK 252
Query: 101 PLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSGHYDE 160
P +N ++ + + ++ FDG++ D + G +
Sbjct: 253 P--LQYYYNPLSKSWQNYISNAMAQAMKNGGFDGWQGDTI------------GDNRVLSH 298
Query: 161 YFGLNVDTDALIYLMVA-NKFLHD---KYPEIITIAEDVSGMPASCRPVTEGGTGFDY 214
+ D L +FL+ K P+ DV+G + Y
Sbjct: 299 NQKDSRDIAHSFMLSDVYAEFLNKMKEKLPQYYLTLNDVNGENI--SKLANSKQDVIY 354
>3qho_A Endoglucanase, 458AA long hypothetical endo-1,4-beta-glucanase;
cellulase, catalytic domain, hydrolase; HET: CTT; 1.65A
{Pyrococcus horikoshii} PDB: 3axx_A* 2zum_A 2zun_A*
3qhm_A* 3qhn_A*
Length = 458
Score = 30.6 bits (68), Expect = 0.41
Identities = 6/29 (20%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 48 EQLKYLVDECHKAGLYVLLDVVHSHASKN 76
+ ++ ++ + G++VLLD H +
Sbjct: 134 QIMEKIIKKAGDLGIFVLLD-YHRIGCTH 161
>2r8c_A Putative amidohydrolase; unknown source, sargasso SEA, structural
genomics, protein structure initiative, PSI; 2.31A
{Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3mkv_A*
Length = 426
Score = 30.8 bits (70), Expect = 0.41
Identities = 6/37 (16%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 46 TPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLN 82
+ ++++ +V E G YV + H++ + +
Sbjct: 213 SEDEIRAIVAEAQGRGTYV---LAHAYTPAAIARAVR 246
>1egz_A Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CLAN GH-A, family
5-2, cellulase; 2.30A {Erwinia chrysanthemi} SCOP:
c.1.8.3
Length = 291
Score = 30.2 bits (68), Expect = 0.46
Identities = 8/37 (21%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 48 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF 84
+++ +VD +Y ++ HSH+++N F
Sbjct: 77 AKVERVVDAAIANDMYAIIG-WHSHSAENNRSEAIRF 112
>3be7_A Zn-dependent arginine carboxypeptidase; unknown source,
amidohydrolase, sargasso SEA, structural GEN protein
structure initiative, PSI; HET: ARG; 2.30A
{Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3dug_A*
Length = 408
Score = 30.4 bits (69), Expect = 0.55
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 46 TPEQLKYLVDECHKAGLYVLLDVVHSHASK 75
T E++K +VDE H G+ V H+H
Sbjct: 204 TLEEMKAIVDEAHNHGMKV---AAHAHGLI 230
>3qr3_A Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A {Hypocrea
jecorina}
Length = 340
Score = 30.0 bits (67), Expect = 0.60
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 48 EQLKYLVDECHKAGLYVLLDVVHSHA 73
+ LV C G Y ++D +H++A
Sbjct: 84 SKYDQLVQGCLSLGAYCIVD-IHNYA 108
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN
BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A
Length = 294
Score = 29.8 bits (67), Expect = 0.61
Identities = 2/30 (6%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 47 PEQLKYLVDECHKAGLYVLLDVVHSHASKN 76
+ ++ +++ + + +++ VH ++
Sbjct: 63 IDTIREVIELAEQNKMVAVVE-VHDATGRD 91
>2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure
initiative, PSI-2, NYSGXRC, structural genomics; 2.33A
{Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18
Length = 418
Score = 30.0 bits (68), Expect = 0.69
Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 46 TPEQLKYLVDECHKAGLYVLLDVVHSHASK 75
T E++ +V G++V VH+H ++
Sbjct: 214 TQEEVDAVVSAAKDYGMWV---AVHAHGAE 240
>3klk_A Glucansucrase; native form, open conformation, multidomain protein,
glycosyltransferase, transferase; 1.65A {Lactobacillus
reuteri} PDB: 3kll_A* 3hz3_A*
Length = 1039
Score = 30.1 bits (67), Expect = 0.70
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 44 FGTPEQLKYLVDECHKAGLYVLLDVVHSH 72
+G+ E L+ + HKAGL + D V
Sbjct: 742 YGSDEDLRNALQALHKAGLQAIADWVPDQ 770
>7a3h_A Endoglucanase; hydrolase, cellulose degradation, glycoside H family
5, michaelis complex, SKEW-BOAT, distortion; 0.95A
{Bacillus agaradhaerens} SCOP: c.1.8.3 PDB: 1h2j_A*
1hf6_A* 1ocq_A* 1w3k_A* 1h11_A* 4a3h_A* 5a3h_A* 6a3h_A*
1w3l_A 8a3h_A* 2v38_A* 1qhz_A 1qi0_A* 1e5j_A* 1qi2_A*
1h5v_A* 1a3h_A 2a3h_A* 3a3h_A* 1lf1_A
Length = 303
Score = 29.8 bits (67), Expect = 0.72
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 48 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF 84
E++K V+ +YV++D H + + E
Sbjct: 80 EKVKEAVEAAIDLDIYVIID-WHILSDNDPNIYKEEA 115
>2c0h_A Mannan endo-1,4-beta-mannosidase; hydrolase, signal, TIM alpha/beta
barrel; 1.6A {Mytilus edulis} SCOP: c.1.8.3
Length = 353
Score = 29.7 bits (66), Expect = 0.83
Identities = 0/29 (0%), Positives = 10/29 (34%)
Query: 48 EQLKYLVDECHKAGLYVLLDVVHSHASKN 76
++ + + + + + + ++
Sbjct: 91 SDMRAYLHAAQRHNILIFFTLWNGAVKQS 119
>1tvn_A Cellulase, endoglucanase G; glycoside hydrolase, CLAN GH-A, family
5-2; 1.41A {Pseudoalteromonas haloplanktis} SCOP:
c.1.8.3 PDB: 1tvp_A*
Length = 293
Score = 29.4 bits (66), Expect = 0.87
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 48 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEF 84
+L +V+ +YV++D HSH + F
Sbjct: 79 SRLDTVVNAAIAEDMYVIID-FHSHEAHTDQATAVRF 114
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase,
phosphate-binding motif; 2.04A {Escherichia coli} PDB:
3cqi_A 3cqh_A 3cqk_A
Length = 295
Score = 29.3 bits (66), Expect = 1.0
Identities = 14/94 (14%), Positives = 25/94 (26%), Gaps = 12/94 (12%)
Query: 10 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVV 69
+ LK V+ +A + L E L + + + + D+
Sbjct: 147 DGLKESVEMASRAQV--------TLAMEIMDYPLMNSISKALGYAHYLNNPWFQLYPDIG 198
Query: 70 HSHA-SKNVLDGLNEFDGTQACFFH--DGPRGTH 100
+ A +V L H D G
Sbjct: 199 NLSAWDNDVQMELQAG-IGHIVAVHVKDTKPGVF 231
>1h4p_A Glucan 1,3-beta-glucosidase I/II; hydrolase, glucan degradation,
hydrolyase, glycosidase; HET: NAG BMA MAN NDG; 1.75A
{Saccharomyces cerevisiae} SCOP: c.1.8.3
Length = 408
Score = 29.0 bits (64), Expect = 1.4
Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 14/72 (19%)
Query: 48 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLWDSRL 107
L + L V +D+ H + G+Q F + G R ++ +
Sbjct: 114 SYLDQAIGWARNNSLKVWVDL---HGAA----------GSQNGFDNSGLRDSYKFLEDSN 160
Query: 108 FNYSEIEVLRFL 119
+ I VL ++
Sbjct: 161 LAVT-INVLNYI 171
>3nco_A Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1, hydrolase;
1.50A {Fervidobacterium nodosum} PDB: 3rjx_A 3rjy_A*
Length = 320
Score = 28.7 bits (64), Expect = 1.5
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 48 EQLKYLVDECHKAGLYVLLDVVH 70
+++K++VD K L V+++ H
Sbjct: 82 DRVKHVVDVALKNDLVVIINCHH 104
>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein
regulation, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 99
Score = 27.5 bits (61), Expect = 1.5
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 95 GPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSM 143
G G+ PL D + +++ + LS ++ + +Y+ D F G TS+
Sbjct: 4 GSSGSQPLLDRSIPDFTAFTTVDDWLSAIK--MVQYR-DSFLTAGFTSL 49
>3ndz_A Endoglucanase D; cellotriose, xylanase, carbohydrate binding D
glucanase, hydrolase; HET: CT3; 2.08A {Clostridium
cellulovorans} PDB: 3ndy_A*
Length = 345
Score = 28.8 bits (64), Expect = 1.5
Identities = 3/23 (13%), Positives = 14/23 (60%)
Query: 48 EQLKYLVDECHKAGLYVLLDVVH 70
++++ + + +YV++++ H
Sbjct: 83 KRVEEIANYAFDNDMYVIINLHH 105
>3icj_A Uncharacterized metal-dependent hydrolase; structural genomics,
amidohydrolase, PSI-2, protein structur initiative; HET:
KCX; 1.95A {Pyrococcus furiosus} PDB: 3etk_A* 3igh_X*
Length = 534
Score = 28.8 bits (65), Expect = 1.9
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 6/52 (11%)
Query: 33 YLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVVHS---HASKNVLDGL 81
Y + L +++ +++ GL V VH+ A LD
Sbjct: 314 YTDNPTTSGELVMNKDEIVEVIERAKPLGLDVA---VHAIGDKAVDVALDAF 362
Score = 27.2 bits (61), Expect = 5.0
Identities = 4/30 (13%), Positives = 11/30 (36%)
Query: 14 YLVDECHKAGLFGTPEQLKYLVDECHKAGL 43
Y + L +++ +++ GL
Sbjct: 314 YTDNPTTSGELVMNKDEIVEVIERAKPLGL 343
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate
dependent decarboxylase, acid stress stringent response;
HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Length = 715
Score = 28.5 bits (63), Expect = 2.1
Identities = 3/43 (6%), Positives = 7/43 (16%), Gaps = 9/43 (20%)
Query: 6 FGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPE 48
G ++ + D +P
Sbjct: 309 DGLLYNTDFIKKTLDVKSI---------HFDSAWVPYTNFSPI 342
>1edg_A Endoglucanase A; family A, cellulases, xylanases, family 5 of
glycosyl hydrol cellulose degradation; 1.60A
{Clostridium cellulolyticum} SCOP: c.1.8.3
Length = 380
Score = 28.6 bits (63), Expect = 2.2
Identities = 6/47 (12%), Positives = 19/47 (40%)
Query: 48 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHD 94
+++ +V+ C +YV+L+ H +++ + +
Sbjct: 101 NRVQEVVNYCIDNKMYVILNTHHDVDKVKGYFPSSQYMASSKKYITS 147
>3ayr_A Endoglucanase; TIM barrel, hydrolase, carbohydrate/sugar binding;
2.00A {Piromyces rhizinflatus} PDB: 3ays_A*
Length = 376
Score = 28.1 bits (62), Expect = 2.4
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 48 EQLKYLVDECHKAGLYVLLDVVH 70
+++ +VD +K G +V+L++ H
Sbjct: 103 KRVHEVVDYPYKNGAFVILNLHH 125
>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn
cluster, hydrolase; 1.02A {Escherichia coli} SCOP:
c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*
Length = 285
Score = 27.8 bits (62), Expect = 2.6
Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 9/75 (12%)
Query: 7 GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECH--KAGLFG-TPEQLKYLVDECHKAGLY 63
E L ++D ++ +D CH AG TP + + + + +
Sbjct: 156 FKFEHLAAIIDGVED------KSRVGVCIDTCHAFAAGYDLRTPAECEKTFADFARTVGF 209
Query: 64 VLLDVVHSHASKNVL 78
L +H + +K+
Sbjct: 210 KYLRGMHLNDAKSTF 224
>3icg_A Endoglucanase D; cellulase, xylanase, carbohydrate binding DOM
glucanase, carbohydrate metabolism, cellulose
degradation, glycosidase; HET: BTB; 2.10A {Clostridium
cellulovorans}
Length = 515
Score = 27.9 bits (61), Expect = 2.9
Identities = 3/23 (13%), Positives = 14/23 (60%)
Query: 48 EQLKYLVDECHKAGLYVLLDVVH 70
++++ + + +YV++++ H
Sbjct: 86 KRVEEIANYAFDNDMYVIINLHH 108
>1ece_A Endocellulase E1; glycosyl hydrolase; HET: BGC; 2.40A {Acidothermus
cellulolyticus} SCOP: c.1.8.3 PDB: 1vrx_A
Length = 358
Score = 27.6 bits (61), Expect = 3.8
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 48 EQLKYLVDECHKAGLYVLLDVVHSHASKN 76
+ + +V + GL ++LD S
Sbjct: 95 QVMDKIVAYAGQIGLRIILDRHRPDCSGQ 123
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H
RNA-binding helicase, innate immunity, IFIH1, S
genomics; 1.60A {Homo sapiens}
Length = 216
Score = 27.5 bits (61), Expect = 3.9
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 24 LFGTPEQL-KYLVDECHKAGLFGTPEQLKYLV-DECHKA 60
+ T + L L++ + ++ DECH
Sbjct: 136 IISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHT 174
Score = 26.3 bits (58), Expect = 8.1
Identities = 7/38 (18%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 6 FGTPEQL-KYLVDECHKAGLFGTPEQLKYLV-DECHKA 41
T + L L++ + ++ DECH
Sbjct: 137 ISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHT 174
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus}
PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I
1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A
1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 27.7 bits (61), Expect = 4.2
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 45 GTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGL 81
GT EQ+ YLV L LL + + +LD +
Sbjct: 389 GTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAI 425
>3ayv_A Putative uncharacterized protein TTHB071; structural genomics,
riken structural genomics/proteomics in RSGI, TIM
barrel, unknown function; 1.85A {Thermus thermophilus}
PDB: 3ayt_A
Length = 254
Score = 27.1 bits (60), Expect = 4.4
Identities = 11/59 (18%), Positives = 18/59 (30%), Gaps = 9/59 (15%)
Query: 29 EQLKYLVDECHKAGLF--------GTPEQLKYLVDECHKAGLYVLLDVVHSHASKNVLD 79
E L +V G+ PE L+ +++ L D H+ D
Sbjct: 117 EALGLVVRRARTLGVRLLLENSHEPHPEALRPVLEAHAGE-LGFCFDAAHARVFSRTPD 174
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase,
structural genomics; HET: PLP; 2.40A {Archaeoglobus
fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Length = 371
Score = 27.4 bits (61), Expect = 4.8
Identities = 12/74 (16%), Positives = 28/74 (37%), Gaps = 9/74 (12%)
Query: 8 TPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLD 67
TPE ++E K G L + G +G +K + C + + +L++
Sbjct: 131 TPENFAQTIEETKKRGE-------VVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVN 183
Query: 68 VVHS--HASKNVLD 79
++ ++ +
Sbjct: 184 GAYAIGRMPVSLKE 197
>3dbo_B Uncharacterized protein; toxin antitoxin complex, vapbc, structural
genomics, PSI-2, protein structure initiative; 1.76A
{Mycobacterium tuberculosis}
Length = 150
Score = 26.8 bits (59), Expect = 5.0
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 166 VDTDALIYLMVANKFLHDKYPE-----IITIAEDVSGMPASCRP 204
+DT I + P+ ++T+AE G+ A+
Sbjct: 25 LDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATT 68
>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding,
hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima
MSB8} PDB: 2x7w_A*
Length = 287
Score = 27.1 bits (60), Expect = 5.2
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 9/75 (12%)
Query: 7 GTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHK--AGL-FGTPEQLKYLVDECHKAGLY 63
EQLK + D +++ D CH +G E ++ L++E
Sbjct: 155 YKLEQLKKIRDLV------DQRDRVAITYDTCHGFDSGYDITKKEGVEALLNEIESLFGL 208
Query: 64 VLLDVVHSHASKNVL 78
L ++H + SK L
Sbjct: 209 ERLKMIHLNDSKYPL 223
>2y8k_A Arabinoxylanase, carbohydrate binding family 6; hydrolase; 1.47A
{Clostridium thermocellum}
Length = 491
Score = 26.9 bits (58), Expect = 6.0
Identities = 5/27 (18%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 48 EQLKYLVDECHKAGLYVLLDVVHSHAS 74
++ +V+ + GLY+++ + + A+
Sbjct: 80 NEIDKIVERTRELGLYLVIT-IGNGAN 105
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas
putida} SCOP: c.67.1.1
Length = 356
Score = 26.8 bits (60), Expect = 6.1
Identities = 5/22 (22%), Positives = 13/22 (59%)
Query: 46 TPEQLKYLVDECHKAGLYVLLD 67
T ++++ + D C + L + +D
Sbjct: 158 TLDEIEAIGDVCKSSSLGLHMD 179
>2osx_A Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel, hydrolase; HET:
SIA GAL BGC 16C; 1.10A {Rhodococcus SP} PDB: 2oyk_A*
2osw_A* 2oyl_A* 2oym_A* 2osy_A*
Length = 481
Score = 26.9 bits (58), Expect = 6.3
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 6/56 (10%)
Query: 48 EQLKYLVDECHKAGLYVLLDVVHSHASKNVLDGLNEFDGTQACFFHDGPRGTHPLW 103
++++ V + G V+LD+ S + G A +G P W
Sbjct: 105 DRVEDRVGWYAERGYKVMLDMHQDVYSGAI--TPEGNSGNGAGAIGNGA----PAW 154
>1r7a_A Sucrose phosphorylase; beta-alpha-barrels, dimer, glycoside
hydrolase, transferase; 1.77A {Bifidobacterium
adolescentis} SCOP: b.71.1.1 c.1.8.1 PDB: 2gdv_A*
2gdu_A*
Length = 504
Score = 27.1 bits (60), Expect = 6.5
Identities = 7/50 (14%), Positives = 11/50 (22%), Gaps = 11/50 (22%)
Query: 91 FFHDGPRGTHPLWDSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGV 140
F D + + +L+S R D V
Sbjct: 156 FTPQ-------QVD---IDTDSDKGWEYLMSIFDQMA-ASHVSYIRLDAV 194
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4
PDB: 1i6n_A
Length = 278
Score = 26.6 bits (59), Expect = 6.7
Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 10/103 (9%)
Query: 10 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYVLLDVV 69
+ L L D G+ E + H T EQ +V+ ++ + ++LD
Sbjct: 123 DVLTELSDIAEPYGVKIALEFV------GHPQCTVNTFEQAYEIVNTVNRDNVGLVLDSF 176
Query: 70 HSHASKNVLDGLNEFDGTQACFFH--DGPRGTHPLW--DSRLF 108
H HA + ++ L + DG + +H D + R++
Sbjct: 177 HFHAMGSNIESLKQADGKKIFIYHIDDTEDFPIGFLTDEDRVW 219
>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, transferase; 2.40A {Neisseria meningitidis}
Length = 794
Score = 26.8 bits (59), Expect = 7.1
Identities = 8/36 (22%), Positives = 11/36 (30%), Gaps = 4/36 (11%)
Query: 29 EQLKYLVDECHKAGLFGTPEQLKYLVDECHKAGLYV 64
+ DE + A L + C K YV
Sbjct: 718 GLVSESFDERNPAVK----VMLHLAISACRKQNKYV 749
>1h1n_A Endo type cellulase ENGI; hydrolase, glycosyl hydrolase, family
5, subtype, thermophilic, thermophIle, endoglucanase;
1.12A {Thermoascus aurantiacus} SCOP: c.1.8.3 PDB:
1gzj_A
Length = 305
Score = 26.9 bits (59), Expect = 7.1
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 48 EQLKYLVDECHKAGLYVLLDVVH 70
L V+ + G Y ++D +
Sbjct: 72 ADLIATVNAITQKGAYAVVDPHN 94
>2aam_A Hypothetical protein TM1410; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, hydrolase; HET: MSE UNL; 2.20A {Thermotoga
maritima} SCOP: c.1.8.15
Length = 309
Score = 26.3 bits (57), Expect = 9.5
Identities = 11/71 (15%), Positives = 20/71 (28%), Gaps = 2/71 (2%)
Query: 98 GTHPLW-DSRLFNYSEIEVLRFLLSNLRWYLEEYQFDGFRFDGVTSMLYHNHGCGEGFSG 156
P W + Y E + S L +++ F G D + S Y
Sbjct: 102 EEDPAWPGNYFVKYWYNEWKEIVFSYLDRVIDQ-GFKGIYLDRIDSFEYWAQEGVISRRS 160
Query: 157 HYDEYFGLNVD 167
+ ++
Sbjct: 161 AARKMINFVLE 171
>3sbx_A Putative uncharacterized protein; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Length = 189
Score = 26.0 bits (58), Expect = 9.8
Identities = 6/46 (13%), Positives = 16/46 (34%), Gaps = 5/46 (10%)
Query: 164 LNVDT--DALIYL---MVANKFLHDKYPEIITIAEDVSGMPASCRP 204
L+ D L + ++ E + + +++ +C P
Sbjct: 144 LDPWGHFDGLRAWLSELADTGYVSRTAMERLIVVDNLDDALQACAP 189
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel
protein, salt bridges, electrostatic interactions,
lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB:
1j5t_A
Length = 251
Score = 26.0 bits (58), Expect = 9.9
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 46 TPEQLKYLVDECHKAGLYVLLDVVHSHA 73
T EQ+K + + + G+ L++ VHS
Sbjct: 135 TAEQIKEIYEAAEELGMDSLVE-VHSRE 161
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.143 0.456
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,035,510
Number of extensions: 251420
Number of successful extensions: 1020
Number of sequences better than 10.0: 1
Number of HSP's gapped: 969
Number of HSP's successfully gapped: 211
Length of query: 237
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 146
Effective length of database: 4,160,982
Effective search space: 607503372
Effective search space used: 607503372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.6 bits)