Query psy9005
Match_columns 99
No_of_seqs 115 out of 306
Neff 4.5
Searched_HMMs 46136
Date Sat Aug 17 01:21:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9005.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9005hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03244 alpha-amylase; Provis 100.0 8.4E-30 1.8E-34 222.8 7.3 77 3-81 352-428 (872)
2 KOG0470|consensus 99.9 1.5E-24 3.2E-29 188.0 5.2 89 2-91 178-271 (757)
3 PLN02447 1,4-alpha-glucan-bran 99.8 1.6E-21 3.5E-26 169.9 7.3 90 4-93 179-269 (758)
4 PLN02960 alpha-amylase 99.7 3.3E-17 7.2E-22 145.0 7.9 87 6-93 349-435 (897)
5 PRK14706 glycogen branching en 99.4 8.1E-13 1.7E-17 113.5 7.0 82 4-93 97-186 (639)
6 PRK12313 glycogen branching en 99.4 1.5E-12 3.2E-17 110.6 6.8 85 2-93 95-189 (633)
7 PRK05402 glycogen branching en 99.3 9E-12 1.9E-16 107.6 7.2 84 3-93 190-284 (726)
8 COG0296 GlgB 1,4-alpha-glucan 99.0 3.5E-10 7.6E-15 97.8 6.2 80 4-91 96-181 (628)
9 TIGR01515 branching_enzym alph 99.0 4.7E-10 1E-14 95.4 6.4 80 4-93 88-175 (613)
10 PRK12568 glycogen branching en 99.0 6.9E-10 1.5E-14 97.3 7.0 83 4-93 197-288 (730)
11 PRK14705 glycogen branching en 98.9 2.7E-09 5.8E-14 97.7 6.3 80 3-93 697-784 (1224)
12 TIGR02104 pulA_typeI pullulana 98.8 5.5E-09 1.2E-13 88.6 4.6 84 5-93 81-182 (605)
13 TIGR02402 trehalose_TreZ malto 98.7 3.5E-08 7.6E-13 83.2 5.8 75 8-93 53-129 (542)
14 PRK03705 glycogen debranching 98.5 2.2E-07 4.8E-12 80.5 5.9 82 8-93 90-197 (658)
15 TIGR02102 pullulan_Gpos pullul 98.3 1.2E-06 2.5E-11 80.1 7.0 89 4-93 394-498 (1111)
16 TIGR02100 glgX_debranch glycog 98.3 1.2E-06 2.6E-11 76.2 5.6 82 8-93 87-202 (688)
17 TIGR02103 pullul_strch alpha-1 98.0 8.7E-06 1.9E-10 73.2 5.3 81 6-91 203-302 (898)
18 PLN02877 alpha-amylase/limit d 97.7 7.4E-05 1.6E-09 67.9 6.1 80 7-91 291-389 (970)
19 COG1523 PulA Type II secretory 97.2 0.00048 1E-08 60.8 4.5 51 41-91 157-216 (697)
20 PRK14510 putative bifunctional 96.9 0.0012 2.6E-08 61.1 4.4 54 40-93 143-205 (1221)
21 TIGR02456 treS_nterm trehalose 94.2 0.04 8.7E-07 46.5 2.9 40 53-93 5-46 (539)
22 TIGR02403 trehalose_treC alpha 92.1 0.13 2.9E-06 43.6 2.9 41 53-94 4-46 (543)
23 PRK10933 trehalose-6-phosphate 90.2 0.25 5.4E-06 42.2 2.8 41 53-94 10-52 (551)
24 smart00642 Aamy Alpha-amylase 84.0 0.77 1.7E-05 33.3 2.0 23 70-93 15-37 (166)
25 PRK01544 bifunctional N5-gluta 60.1 4.8 0.0001 34.2 1.3 59 27-89 206-264 (506)
26 TIGR00536 hemK_fam HemK family 52.8 8.4 0.00018 29.7 1.5 58 27-89 182-239 (284)
27 PLN00196 alpha-amylase; Provis 50.4 8.8 0.00019 32.1 1.3 23 71-94 41-63 (428)
28 PRK09505 malS alpha-amylase; R 49.6 9.2 0.0002 34.1 1.4 24 70-94 226-249 (683)
29 PRK09328 N5-glutamine S-adenos 40.4 17 0.00036 27.0 1.4 60 26-89 174-233 (275)
30 PRK10785 maltodextrin glucosid 39.4 16 0.00036 31.5 1.3 23 70-93 175-197 (598)
31 TIGR03533 L3_gln_methyl protei 37.0 17 0.00037 28.3 1.0 58 27-89 189-246 (284)
32 PLN02361 alpha-amylase 36.4 19 0.0004 30.1 1.2 22 72-94 27-48 (401)
33 PRK14966 unknown domain/N5-glu 35.6 19 0.00041 30.6 1.1 58 27-89 319-376 (423)
34 PRK09441 cytoplasmic alpha-amy 33.0 22 0.00047 29.6 1.0 23 71-94 19-41 (479)
35 PF10524 NfI_DNAbd_pre-N: Nucl 32.1 14 0.00029 22.4 -0.2 18 73-90 10-27 (44)
36 TIGR03860 FMN_nitrolo FMN-depe 31.0 28 0.0006 28.7 1.3 20 70-89 390-409 (422)
37 COG0366 AmyA Glycosidases [Car 30.2 27 0.00058 27.9 1.1 24 69-93 24-47 (505)
38 PRK11805 N5-glutamine S-adenos 30.1 34 0.00073 27.1 1.7 57 27-88 201-257 (307)
39 KOG0471|consensus 28.1 28 0.00062 30.0 1.0 39 56-95 20-60 (545)
40 TIGR01531 glyc_debranch glycog 27.6 33 0.00071 33.6 1.4 25 68-93 126-150 (1464)
41 TIGR03704 PrmC_rel_meth putati 26.1 27 0.00059 26.7 0.5 58 27-88 153-210 (251)
42 TIGR02401 trehalose_TreY malto 25.7 38 0.00083 31.2 1.4 23 70-93 12-34 (825)
43 PF12634 Inp1: Inheritance of 23.8 36 0.00077 24.9 0.7 35 51-89 62-97 (145)
44 PF08052 PyrBI_leader: PyrBI o 23.5 35 0.00076 20.5 0.5 12 76-87 5-16 (44)
45 COG1054 Predicted sulfurtransf 23.1 29 0.00064 28.6 0.2 41 55-96 38-82 (308)
46 PF04796 RepA_C: Plasmid encod 22.7 50 0.0011 24.4 1.3 34 61-95 39-72 (161)
47 cd06402 PB1_p62 The PB1 domain 21.9 56 0.0012 22.0 1.3 31 66-96 22-55 (87)
48 PF14701 hDGE_amylase: glucano 21.8 53 0.0011 28.0 1.4 22 69-91 17-38 (423)
49 COG1054 Predicted sulfurtransf 21.8 65 0.0014 26.6 1.9 33 49-81 125-164 (308)
50 PF05608 DUF778: Protein of un 21.8 35 0.00076 24.8 0.3 15 59-73 12-26 (136)
51 PRK01415 hypothetical protein; 20.2 38 0.00082 26.6 0.2 41 55-96 38-82 (247)
No 1
>PLN03244 alpha-amylase; Provisional
Probab=99.96 E-value=8.4e-30 Score=222.82 Aligned_cols=77 Identities=39% Similarity=0.707 Sum_probs=72.4
Q ss_pred cCceeEEecCccceEEecCCCCCCceeeEEeCCCCCCCeeeccCCCCCCCCccEEEeeeeccCCCCcccchHHhHhhhh
Q psy9005 3 EKIYSILRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYEDFVRVHE 81 (99)
Q Consensus 3 ~~~~~~dRIPawa~~v~q~~~~~~~f~~~~w~P~~~~~Y~~k~~~p~~p~~LrIYEaHVGmssee~kV~TY~eF~~~VL 81 (99)
.+|+ +|||||||+||+|+++ +..|+|+||+||.+++|+|+|++|++|.+||||||||||||+|+||+||+||+++|.
T Consensus 352 ~~g~-~~RiPaw~~~~~~~~~-~~~~~~~~w~P~~~~~y~~k~~~p~~p~~lrIYE~HvGms~~e~kv~ty~eF~~~vt 428 (872)
T PLN03244 352 PDGP-LERIPAWATYVLPDDD-GKQAFAIHWEPPPEAAHKWKNMKPKVPESLRIYECHVGISGSEPKISSFEEFTEKVT 428 (872)
T ss_pred CCCC-cccCCCCeeeEEecCC-CCceeeeEeCCCcccCCccCCCCCCCCCCceEEEEEeeecCCCCCcccHHHHhhccC
Confidence 3455 9999999999999987 789999999999888999999999999999999999999999999999999999965
No 2
>KOG0470|consensus
Probab=99.90 E-value=1.5e-24 Score=188.02 Aligned_cols=89 Identities=30% Similarity=0.511 Sum_probs=84.2
Q ss_pred ccCceeEEecCccceEEecCCCCCCceeeEEeCCCCCCCeeeccCCCCCCC-CccEEEeee-eccCCCCcccc---hHHh
Q psy9005 2 TEKIYSILRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPD-NLKIYESHV-GICTQEQKCAS---YEDF 76 (99)
Q Consensus 2 ~~~~~~~dRIPawa~~v~q~~~~~~~f~~~~w~P~~~~~Y~~k~~~p~~p~-~LrIYEaHV-Gmssee~kV~T---Y~eF 76 (99)
|-.|+.++|+||||++++|+.. ..+|.+++|+|+++..|.|++++|+.|. +|||||||| |||+.|++|.| |++|
T Consensus 178 ~p~g~~~~~~~~~~~~~~~~~~-~~q~~~~~~~~~~e~~w~~~~~~p~~P~~sL~IYE~HVrgfS~~E~~v~~~~gY~~F 256 (757)
T KOG0470|consen 178 TPYGETCKRIPAWATYVDQEGE-GPQYYGIYWDPSPEFDWGFKHSRPKIPESSLRIYELHVRGFSSHESKVNTRGGYLGF 256 (757)
T ss_pred cCCcceeeccChHhhcccCCCc-ccceeeccCCCCCcccccccCCCCCCChhheEEEEEeeccccCCCCccccccchhhh
Confidence 3458899999999999999876 8999999999998899999999999997 999999999 99999999999 9999
Q ss_pred HhhhhhhhhccCCcc
Q psy9005 77 VRVHEERNLAATVTS 91 (99)
Q Consensus 77 ~~~VLPrIk~lG~~~ 91 (99)
|++||||||+||||.
T Consensus 257 teKvlphlK~LG~Na 271 (757)
T KOG0470|consen 257 TEKVLPHLKKLGYNA 271 (757)
T ss_pred hhhhhhHHHHhCccc
Confidence 999999999999995
No 3
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=99.85 E-value=1.6e-21 Score=169.89 Aligned_cols=90 Identities=28% Similarity=0.537 Sum_probs=81.5
Q ss_pred CceeEEecCccceEEecCCCC-CCceeeEEeCCCCCCCeeeccCCCCCCCCccEEEeeeeccCCCCcccchHHhHhhhhh
Q psy9005 4 KIYSILRLSPWATYVTEPPVV-GHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYEDFVRVHEE 82 (99)
Q Consensus 4 ~~~~~dRIPawa~~v~q~~~~-~~~f~~~~w~P~~~~~Y~~k~~~p~~p~~LrIYEaHVGmssee~kV~TY~eF~~~VLP 82 (99)
+|++++|+||||++++|++.. +.+|++++|+|+.+++|+|++++|++|.+++|||||||+++++++++||++|++++||
T Consensus 179 ~g~~~~r~dpya~~~~~~p~~~~~~~~svv~dp~~~~~y~w~~~~~~~~~~~~IYE~Hvg~~~~~~~~gty~~~~~~~L~ 258 (758)
T PLN02447 179 DGRWVDRIPAWIKYAVQAPGEIGAPYNGVYWDPPEEEKYVFKHPRPPRPAALRIYEAHVGMSSEEPKVNSYREFADDVLP 258 (758)
T ss_pred CCcEEeecCchHheeeccCCccCCCCceEEeCCCCCCCCCCCCCCCCCCCCCEEEEEeCCcccCCCCCCCHHHHHHHHHH
Confidence 477899999999999998752 2489999999986678999999998889999999999999999999999999999999
Q ss_pred hhhccCCcccc
Q psy9005 83 RNLAATVTSSW 93 (99)
Q Consensus 83 rIk~lG~~~~~ 93 (99)
+||+||||.-|
T Consensus 259 ylk~LG~t~I~ 269 (758)
T PLN02447 259 RIKALGYNAVQ 269 (758)
T ss_pred HHHHcCCCEEE
Confidence 99999999754
No 4
>PLN02960 alpha-amylase
Probab=99.70 E-value=3.3e-17 Score=144.97 Aligned_cols=87 Identities=33% Similarity=0.617 Sum_probs=78.0
Q ss_pred eeEEecCccceEEecCCCCCCceeeEEeCCCCCCCeeeccCCCCCCCCccEEEeeeeccCCCCcccchHHhHhhhhhhhh
Q psy9005 6 YSILRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYEDFVRVHEERNL 85 (99)
Q Consensus 6 ~~~dRIPawa~~v~q~~~~~~~f~~~~w~P~~~~~Y~~k~~~p~~p~~LrIYEaHVGmssee~kV~TY~eF~~~VLPrIk 85 (99)
++++|+||||+++.++++ +..+..++|+|+...+|.|++.+|..+..+.|||+|||+++.+++++||++|++.+||+||
T Consensus 349 g~~~~vdpyA~~~qp~~~-~~~~~~v~~d~~~~~~y~W~~~~p~~~~~~vIYElHvg~~~~e~~~gtf~~~~e~~LdYLk 427 (897)
T PLN02960 349 GPLERVPAWATYVLPDPD-GKQWYAIHWEPPPEEAYKWKFERPKVPKSLRIYECHVGISGSEPKISSFKEFTQKVLPHVK 427 (897)
T ss_pred CceEECCCcceeEeecCC-CccceEEEeCCCCCCCCCCCCCCCCCCCCcEEEEEecccccCCCCCCCHHHHHHHHHHHHH
Confidence 458999999999988876 6678999999864467999999887788999999999999999999999999999999999
Q ss_pred ccCCcccc
Q psy9005 86 AATVTSSW 93 (99)
Q Consensus 86 ~lG~~~~~ 93 (99)
+||||.-|
T Consensus 428 ~LGvt~Ie 435 (897)
T PLN02960 428 KAGYNAIQ 435 (897)
T ss_pred HcCCCEEE
Confidence 99999754
No 5
>PRK14706 glycogen branching enzyme; Provisional
Probab=99.38 E-value=8.1e-13 Score=113.47 Aligned_cols=82 Identities=18% Similarity=0.325 Sum_probs=67.1
Q ss_pred CceeEEecCccceEEecCCCCCCceeeEEeCCCCCCCeeeccCCCC------CCCCccEEEeeeeccC--CCCcccchHH
Q psy9005 4 KIYSILRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPK------KPDNLKIYESHVGICT--QEQKCASYED 75 (99)
Q Consensus 4 ~~~~~dRIPawa~~v~q~~~~~~~f~~~~w~P~~~~~Y~~k~~~p~------~p~~LrIYEaHVGmss--ee~kV~TY~e 75 (99)
+|.++++++|||+++.+++. + .+++|+++ |+|++..+. .+.++.|||+|||+-+ .+++.+||++
T Consensus 97 ~g~~~~~~DPYa~~~~~~~~-~---~svv~~~~----~~w~d~~w~~~~~~~~~~~~~IYE~Hvg~f~~~~~g~~~ty~~ 168 (639)
T PRK14706 97 AGQTVDKMDPYGSFFEVRPN-T---ASIIWEDR----FEWTDTRWMSSRTAGFDQPISIYEVHVGSWARRDDGWFLNYRE 168 (639)
T ss_pred CCCEEeccCcceEEEecCCC-C---ceEECCCC----CCCCCcccccccCCccCCCcEEEEEehhhcccCCCCCccCHHH
Confidence 36778999999999998764 3 78999875 999987642 2356899999999964 3456899999
Q ss_pred hHhhhhhhhhccCCcccc
Q psy9005 76 FVRVHEERNLAATVTSSW 93 (99)
Q Consensus 76 F~~~VLPrIk~lG~~~~~ 93 (99)
+++++||+||+||||.-+
T Consensus 169 ~~~~l~~ylk~lG~t~ve 186 (639)
T PRK14706 169 LAHRLGEYVTYMGYTHVE 186 (639)
T ss_pred HHHHHHHHHHHcCCCEEE
Confidence 999988999999999643
No 6
>PRK12313 glycogen branching enzyme; Provisional
Probab=99.35 E-value=1.5e-12 Score=110.58 Aligned_cols=85 Identities=19% Similarity=0.307 Sum_probs=70.2
Q ss_pred ccCceeEEecCccceEEecCCCCCCceeeEEeCCCCCCCeeeccCCCC--------CCCCccEEEeeeec--cCCCCccc
Q psy9005 2 TEKIYSILRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPK--------KPDNLKIYESHVGI--CTQEQKCA 71 (99)
Q Consensus 2 ~~~~~~~dRIPawa~~v~q~~~~~~~f~~~~w~P~~~~~Y~~k~~~p~--------~p~~LrIYEaHVGm--ssee~kV~ 71 (99)
+++|.++++.+||++.+.+.+. + .+++|+|+ .|.|++.... ..+++.|||+|||. .+++++.+
T Consensus 95 ~~~g~~~~~~DPya~~~~~~~~-~---~s~v~d~~---~~~w~~~~~~~~~~~~~~~~~~~~iYe~hv~~f~~~~~~~~g 167 (633)
T PRK12313 95 RQDGYQVEKIDPFAFYFEARPG-T---ASIVWDLP---EYKWKDGLWLARRKRWNALDRPISIYEVHLGSWKRNEDGRPL 167 (633)
T ss_pred CCCCeEEecCCCceEEEecCCC-C---ceEECCCc---ccCCCChhhhhccccCCCCCCCceEEEEehhccccCCCCCcc
Confidence 3568889999999999988654 3 78999986 5999987531 12678999999996 45568899
Q ss_pred chHHhHhhhhhhhhccCCcccc
Q psy9005 72 SYEDFVRVHEERNLAATVTSSW 93 (99)
Q Consensus 72 TY~eF~~~VLPrIk~lG~~~~~ 93 (99)
||+++++.+||+||+||||.-|
T Consensus 168 ~~~~~~~~ll~yl~~LGv~~i~ 189 (633)
T PRK12313 168 SYRELADELIPYVKEMGYTHVE 189 (633)
T ss_pred CHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999988999999999765
No 7
>PRK05402 glycogen branching enzyme; Provisional
Probab=99.27 E-value=9e-12 Score=107.61 Aligned_cols=84 Identities=15% Similarity=0.173 Sum_probs=69.8
Q ss_pred cCceeEEecCccceEEecCCCCCCceeeEEeCCCCCCCeeeccCCCC--------CCCCccEEEeeeeccC---CCCccc
Q psy9005 3 EKIYSILRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPK--------KPDNLKIYESHVGICT---QEQKCA 71 (99)
Q Consensus 3 ~~~~~~dRIPawa~~v~q~~~~~~~f~~~~w~P~~~~~Y~~k~~~p~--------~p~~LrIYEaHVGmss---ee~kV~ 71 (99)
++|.++++++||++.+...+. + .+++++|+ .|+|+++... ..+++.|||+|||.-+ ++++.+
T Consensus 190 ~~g~~~~~~DPYa~~~~~~~~-~---~s~v~d~~---~~~w~~~~~~~~~~~~~~~~~~~~iYe~hv~~f~~~~~~~~~g 262 (726)
T PRK05402 190 ADGELLLKADPYAFAAEVRPA-T---ASIVADLS---QYQWNDAAWMEKRAKRNPLDAPISIYEVHLGSWRRHEDGGRFL 262 (726)
T ss_pred CCCcEeecCCCceEEEecCCC-C---cEEEeCCc---cCCCCCcchhhcccccCcccCCcEEEEEehhhhccCCCCCccc
Confidence 457888999999999999764 3 68999985 5999887542 2367999999999954 567899
Q ss_pred chHHhHhhhhhhhhccCCcccc
Q psy9005 72 SYEDFVRVHEERNLAATVTSSW 93 (99)
Q Consensus 72 TY~eF~~~VLPrIk~lG~~~~~ 93 (99)
||+++++.+||+||+||||.-|
T Consensus 263 ~~~~i~~~l~~ylk~LGv~~i~ 284 (726)
T PRK05402 263 SYRELADQLIPYVKEMGFTHVE 284 (726)
T ss_pred CHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999988999999999754
No 8
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=99.04 E-value=3.5e-10 Score=97.83 Aligned_cols=80 Identities=18% Similarity=0.181 Sum_probs=65.2
Q ss_pred CceeEEecCccceEEecCCCCCCceeeEEeCCCCCCCeeeccC----CCC--CCCCccEEEeeeeccCCCCcccchHHhH
Q psy9005 4 KIYSILRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSS----KPK--KPDNLKIYESHVGICTQEQKCASYEDFV 77 (99)
Q Consensus 4 ~~~~~dRIPawa~~v~q~~~~~~~f~~~~w~P~~~~~Y~~k~~----~p~--~p~~LrIYEaHVGmssee~kV~TY~eF~ 77 (99)
.|......+|++++.-+.+. + ..++++++ .|+|+.. +.+ .-+++.|||+|||.-+++ +.-+|.|.+
T Consensus 96 ~g~~~~~~DP~a~~~~~~p~-~---aS~v~~~~---~y~W~d~~~~~~~~~~~~e~~vIYElHvGs~~~~-~~~~~~e~a 167 (628)
T COG0296 96 SGQLRLKADPYARRQEVGPH-T---ASQVVDLP---DYEWQDERWDRAWRGRFWEPIVIYELHVGSFTPD-RFLGYFELA 167 (628)
T ss_pred CCceeeccCchhhccCCCCC-C---cceecCCC---CcccccccccccccCCCCCCceEEEEEeeeccCC-CCcCHHHHH
Confidence 34567788899999766554 4 78999986 2999944 332 237999999999998887 999999999
Q ss_pred hhhhhhhhccCCcc
Q psy9005 78 RVHEERNLAATVTS 91 (99)
Q Consensus 78 ~~VLPrIk~lG~~~ 91 (99)
+..||+||+||||-
T Consensus 168 ~~llpYl~elG~T~ 181 (628)
T COG0296 168 IELLPYLKELGITH 181 (628)
T ss_pred HHHhHHHHHhCCCE
Confidence 99999999999984
No 9
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=99.02 E-value=4.7e-10 Score=95.44 Aligned_cols=80 Identities=20% Similarity=0.286 Sum_probs=61.4
Q ss_pred CceeEEecCccceEEecCCCCCCceeeEEeCCCCCCCee-----eccCCCCC-C--CCccEEEeeeeccCCCCcccchHH
Q psy9005 4 KIYSILRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHK-----WTSSKPKK-P--DNLKIYESHVGICTQEQKCASYED 75 (99)
Q Consensus 4 ~~~~~dRIPawa~~v~q~~~~~~~f~~~~w~P~~~~~Y~-----~k~~~p~~-p--~~LrIYEaHVGmssee~kV~TY~e 75 (99)
+|+...+++|||+.+.+++. + .+++.+|+ .|. |++.++++ | +++.|||+|||.-+.+ +||+.
T Consensus 88 ~g~~~~~~DPYA~~~~~~~~-~---~s~v~d~~---~~~w~~~~w~~~~~~~~~~~~~~~iYe~hv~~~~~~---g~~~~ 157 (613)
T TIGR01515 88 NGEIRLKADPYAFYAEVRPN-T---ASLVYDLE---GYSWQDQKWQEKRKAKTPYEKPVSIYELHLGSWRHG---LSYRE 157 (613)
T ss_pred CCcEEEeCCCCEeeeccCCC-C---cEEEECCc---cCccCchhhhhcccccCcccCCceEEEEehhhccCC---CCHHH
Confidence 45677899999999988654 3 56777765 354 44444322 2 4688999999997755 99999
Q ss_pred hHhhhhhhhhccCCcccc
Q psy9005 76 FVRVHEERNLAATVTSSW 93 (99)
Q Consensus 76 F~~~VLPrIk~lG~~~~~ 93 (99)
+++++||+||+||||.-|
T Consensus 158 i~~~l~dyl~~LGvt~i~ 175 (613)
T TIGR01515 158 LADQLIPYVKELGFTHIE 175 (613)
T ss_pred HHHHHHHHHHHcCCCEEE
Confidence 999988999999999755
No 10
>PRK12568 glycogen branching enzyme; Provisional
Probab=99.01 E-value=6.9e-10 Score=97.27 Aligned_cols=83 Identities=17% Similarity=0.162 Sum_probs=65.4
Q ss_pred CceeEEecCccceEEecCCCCCCceeeEEeCCCCCCCeeeccCCC-------CCCCCccEEEeeeeccC--CCCcccchH
Q psy9005 4 KIYSILRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKP-------KKPDNLKIYESHVGICT--QEQKCASYE 74 (99)
Q Consensus 4 ~~~~~dRIPawa~~v~q~~~~~~~f~~~~w~P~~~~~Y~~k~~~p-------~~p~~LrIYEaHVGmss--ee~kV~TY~ 74 (99)
+|....+++|||+.+..+++ + ..+++++. .|.|++... ..+.++.|||+|||.-+ .+.+.++|+
T Consensus 197 ~G~~~~k~DPYA~~~e~~p~-~---asvV~~~~---~~~W~d~~W~~~r~~~~~~~~~~IYEvHvgsf~~~~~~~~~~~~ 269 (730)
T PRK12568 197 DGRVLLKADPVARQTELPPA-T---ASVVPSAA---AFAWTDAAWMARRDPAAVPAPLSIYEVHAASWRRDGHNQPLDWP 269 (730)
T ss_pred CCeEeecCCCcceEeecCCC-C---CeEEcCCC---CCCCCChhhhhcccccCCCCCcEEEEEEhHHhcCCCCCCCCCHH
Confidence 46677899999999988664 3 67787754 488877632 23478999999999843 445688999
Q ss_pred HhHhhhhhhhhccCCcccc
Q psy9005 75 DFVRVHEERNLAATVTSSW 93 (99)
Q Consensus 75 eF~~~VLPrIk~lG~~~~~ 93 (99)
++++..||+||+||||.-|
T Consensus 270 ~la~~ll~ylk~LGvt~I~ 288 (730)
T PRK12568 270 TLAEQLIPYVQQLGFTHIE 288 (730)
T ss_pred HHHHHHHHHHHHcCCCEEE
Confidence 9999999999999999654
No 11
>PRK14705 glycogen branching enzyme; Provisional
Probab=98.89 E-value=2.7e-09 Score=97.70 Aligned_cols=80 Identities=14% Similarity=0.160 Sum_probs=64.4
Q ss_pred cCceeEEecCccceEEecCCCCCCceeeEEeCCCCCCCeeeccCCC-----C---CCCCccEEEeeeeccCCCCcccchH
Q psy9005 3 EKIYSILRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKP-----K---KPDNLKIYESHVGICTQEQKCASYE 74 (99)
Q Consensus 3 ~~~~~~dRIPawa~~v~q~~~~~~~f~~~~w~P~~~~~Y~~k~~~p-----~---~p~~LrIYEaHVGmssee~kV~TY~ 74 (99)
.+|+++++.+||++++.+++. + .++++++. |+|+++.. + ...++.|||+|||.=+. -+||+
T Consensus 697 ~~g~~~~k~DPyA~~~e~~p~-~---aS~V~d~~----~~w~d~~W~~~r~~~~~~~~p~~IYEvHvgsf~~---~~~~~ 765 (1224)
T PRK14705 697 KAGQWVEKADPLAFGTEVPPL-T---ASRVVEAS----YAFKDAEWMSARAERDPHNSPMSVYEVHLGSWRL---GLGYR 765 (1224)
T ss_pred CCCcEEecCCccccccccCCC-C---CeEEeCCC----CCcCChhhhhccccCCCCcCCcEEEEEEeccccc---CCchH
Confidence 357788999999999888664 3 67999985 99988643 1 13679999999998654 37999
Q ss_pred HhHhhhhhhhhccCCcccc
Q psy9005 75 DFVRVHEERNLAATVTSSW 93 (99)
Q Consensus 75 eF~~~VLPrIk~lG~~~~~ 93 (99)
++++..||+||+||||.-|
T Consensus 766 ~l~~~lldYlk~LGvt~Ie 784 (1224)
T PRK14705 766 ELAKELVDYVKWLGFTHVE 784 (1224)
T ss_pred HHHHHHHHHHHHhCCCEEE
Confidence 9999999999999999754
No 12
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=98.79 E-value=5.5e-09 Score=88.64 Aligned_cols=84 Identities=17% Similarity=0.200 Sum_probs=63.2
Q ss_pred ceeEEecCccceEEecCCCCCCceeeEEeCCCCCCCeeeccCC-C--CCCCCccEEEeeeeccCCCC-----cccchHHh
Q psy9005 5 IYSILRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSK-P--KKPDNLKIYESHVGICTQEQ-----KCASYEDF 76 (99)
Q Consensus 5 ~~~~dRIPawa~~v~q~~~~~~~f~~~~w~P~~~~~Y~~k~~~-p--~~p~~LrIYEaHVGmssee~-----kV~TY~eF 76 (99)
+.+...++|||+.+..+.. .+++.+|...+++.|.+.+ | ..+..+.|||+||+.-+..+ ..|||..|
T Consensus 81 ~~~~~~~DPya~~~~~~~~-----~s~v~d~~~~~~~~w~~~~~~~~~~~~~~vIYElhv~~ft~~~~~~~~~~G~f~~~ 155 (605)
T TIGR02104 81 GKWRETVDPYAKAVTVNGK-----RGAVIDLERTNPEGWEKDHRPRLENPEDAIIYELHIRDFSIHENSGVKNKGKYLGL 155 (605)
T ss_pred CCeEEEcCCCcceeccCCC-----cEEEEcccccCccCcccccCCCCCChhHcEEEEEecchhccCCCCCcCCCCceeee
Confidence 4456789999999887542 5678888644567888765 4 34578899999999833222 26999999
Q ss_pred Hhh----------hhhhhhccCCcccc
Q psy9005 77 VRV----------HEERNLAATVTSSW 93 (99)
Q Consensus 77 ~~~----------VLPrIk~lG~~~~~ 93 (99)
++. .||+||+||||.-|
T Consensus 156 ~e~~~~~~~g~~~~LdyL~~LGvt~I~ 182 (605)
T TIGR02104 156 TETGTKGPNGVSTGLDYLKELGVTHVQ 182 (605)
T ss_pred eccCccccccchhHHHHHHHcCCCEEE
Confidence 986 59999999999765
No 13
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=98.67 E-value=3.5e-08 Score=83.21 Aligned_cols=75 Identities=16% Similarity=0.209 Sum_probs=60.8
Q ss_pred EEecCccceEEecCCCCCCceeeEEeCCCCCCCeeeccCCCC--CCCCccEEEeeeeccCCCCcccchHHhHhhhhhhhh
Q psy9005 8 ILRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPK--KPDNLKIYESHVGICTQEQKCASYEDFVRVHEERNL 85 (99)
Q Consensus 8 ~dRIPawa~~v~q~~~~~~~f~~~~w~P~~~~~Y~~k~~~p~--~p~~LrIYEaHVGmssee~kV~TY~eF~~~VLPrIk 85 (99)
...++||++.+....+ + .+++++|. .|+|+++.++ +...+.|||+|||.-+. -|+|+.+++. ||+||
T Consensus 53 ~~v~DPya~~~~~~~~-~---~S~V~d~~---~~~w~~~~~~~~~~~~~viYE~hv~~f~~---~G~~~gi~~~-l~yl~ 121 (542)
T TIGR02402 53 TPVPDPASRRQPDGVH-G---PSQVVDPD---RYAWQDTGWRGRPLEEAVIYELHVGTFTP---EGTFDAAIEK-LPYLA 121 (542)
T ss_pred EEecCccccccccCCC-C---CeEEecCc---ccCCCCccccCCCccccEEEEEEhhhcCC---CCCHHHHHHh-hHHHH
Confidence 4568899998654433 3 58999986 4999998763 34789999999999775 5899999998 89999
Q ss_pred ccCCcccc
Q psy9005 86 AATVTSSW 93 (99)
Q Consensus 86 ~lG~~~~~ 93 (99)
+||||.-|
T Consensus 122 ~LGv~~i~ 129 (542)
T TIGR02402 122 DLGITAIE 129 (542)
T ss_pred HcCCCEEE
Confidence 99999765
No 14
>PRK03705 glycogen debranching enzyme; Provisional
Probab=98.49 E-value=2.2e-07 Score=80.55 Aligned_cols=82 Identities=17% Similarity=0.103 Sum_probs=57.7
Q ss_pred EEecCccceEEecCCCCCC-----------------ceeeEEeCCCCCCCeeeccCCCCC--CCCccEEEeeeec-cCC-
Q psy9005 8 ILRLSPWATYVTEPPVVGH-----------------AYEQRIWNPKPQDKHKWTSSKPKK--PDNLKIYESHVGI-CTQ- 66 (99)
Q Consensus 8 ~dRIPawa~~v~q~~~~~~-----------------~f~~~~w~P~~~~~Y~~k~~~p~~--p~~LrIYEaHVGm-sse- 66 (99)
..-++|||+.+......+. ...+++.++ +|.|+++.++. ...+.|||+||+- +..
T Consensus 90 ~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~----~~~W~~~~~p~~~~~~~vIYE~hvr~ft~~~ 165 (658)
T PRK03705 90 KLLIDPCARQVEGEVKDDPRLHGGHDEPDYRDNAAIAPKCVVVDD----HYDWEDDAPPRTPWGSTVIYEAHVRGLTYLH 165 (658)
T ss_pred cEecCcCceEEccccccCccccccccCCccccccccCCceEEecC----CCCCCCCCCCCCCccccEEEEEehhhhcccC
Confidence 3458999999986421111 124556554 49999876642 3788999999964 322
Q ss_pred ----CCcccchHHhHhh-hhhhhhccCCcccc
Q psy9005 67 ----EQKCASYEDFVRV-HEERNLAATVTSSW 93 (99)
Q Consensus 67 ----e~kV~TY~eF~~~-VLPrIk~lG~~~~~ 93 (99)
...-|||+-+++. .|++||+||||.-|
T Consensus 166 ~~~~~~~~Gtf~g~~~~~~LdYLk~LGvt~I~ 197 (658)
T PRK03705 166 PEIPVEIRGTYAALGHPVMIAYLKQLGITALE 197 (658)
T ss_pred CCCCccccccHHHhhcccchHHHHHcCCCEEE
Confidence 2346999999985 59999999999765
No 15
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=98.34 E-value=1.2e-06 Score=80.15 Aligned_cols=89 Identities=19% Similarity=0.229 Sum_probs=61.9
Q ss_pred CceeEEecCccceEEec-CCC----CCCceeeEEeCCCCC--CCeeeccCCC-CCCCCccEEEeeeeccCCC--------
Q psy9005 4 KIYSILRLSPWATYVTE-PPV----VGHAYEQRIWNPKPQ--DKHKWTSSKP-KKPDNLKIYESHVGICTQE-------- 67 (99)
Q Consensus 4 ~~~~~dRIPawa~~v~q-~~~----~~~~f~~~~w~P~~~--~~Y~~k~~~p-~~p~~LrIYEaHVGmssee-------- 67 (99)
+++....++|||+.+.. +.. ......+++++++.- +.|.|.+..+ .++..+.|||+||+--+..
T Consensus 394 ~~~~~~~~DPYA~al~~~n~~~~~~~~~~~ks~vvD~~~~~p~~~~~~~~~~~~~~~d~vIYElHVrdFt~d~~~~~~~~ 473 (1111)
T TIGR02102 394 GGDKVLALDPYAKSLAAWNDATSDDQIKVAKAAFVDPSSLGPQELDFAKIENFKKREDAIIYEAHVRDFTSDPAIAGDLT 473 (1111)
T ss_pred CCceEEEeChhheEEeccCcccccccCCCCceEEEcCcccCccccccccccccCCccceEEEEEechhhCcCCCCCcccc
Confidence 34566778999999874 210 012235788887532 2477876333 4568899999999973321
Q ss_pred CcccchHHhHhhhhhhhhccCCcccc
Q psy9005 68 QKCASYEDFVRVHEERNLAATVTSSW 93 (99)
Q Consensus 68 ~kV~TY~eF~~~VLPrIk~lG~~~~~ 93 (99)
...|||+-|++. |++||+||||.-|
T Consensus 474 ~~~Gtf~gl~ek-LdYLkeLGVT~I~ 498 (1111)
T TIGR02102 474 AQFGTFAAFVEK-LDYLQDLGVTHIQ 498 (1111)
T ss_pred cCCcCHHHHHHh-HHHHHHcCCCEEE
Confidence 136999999999 8999999999755
No 16
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=98.28 E-value=1.2e-06 Score=76.23 Aligned_cols=82 Identities=20% Similarity=0.256 Sum_probs=58.7
Q ss_pred EEecCccceEEecCCCC------------------------CCceeeEEeCCCCCCCeeeccC--CCCC-CCCccEEEee
Q psy9005 8 ILRLSPWATYVTEPPVV------------------------GHAYEQRIWNPKPQDKHKWTSS--KPKK-PDNLKIYESH 60 (99)
Q Consensus 8 ~dRIPawa~~v~q~~~~------------------------~~~f~~~~w~P~~~~~Y~~k~~--~p~~-p~~LrIYEaH 60 (99)
...++|||+.+..+... .....+++.+++ |.|++. +|.. ...+.|||+|
T Consensus 87 ~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~d~~----~~w~~~~~~p~~~~~d~iIYE~h 162 (688)
T TIGR02100 87 KLLLDPYAKALDGDLIWDDALFGYRIGHPDQDLSFDERDSAPGMPKAVVVDPD----FDWGGDEQRPRTPWEDTIIYEAH 162 (688)
T ss_pred ceecCcCceeecCCCcccccccccccccccccccccccccccccCceEEeCCC----CCCCCcccCCCCCccccEEEEEE
Confidence 45689999999765210 011256777765 999876 3433 3788999999
Q ss_pred eec-cCC-----CCcccchHHhHhh-hhhhhhccCCcccc
Q psy9005 61 VGI-CTQ-----EQKCASYEDFVRV-HEERNLAATVTSSW 93 (99)
Q Consensus 61 VGm-sse-----e~kV~TY~eF~~~-VLPrIk~lG~~~~~ 93 (99)
|+- +.. +...|||+-++++ .||+||+||||.-|
T Consensus 163 vr~Ft~~~~~~~~~~~Gtf~Gi~~~~~LdyLk~LGvtaI~ 202 (688)
T TIGR02100 163 VKGFTQLHPDIPEELRGTYAGLAHPAMIDYLKKLGVTAVE 202 (688)
T ss_pred hHHhcCCCCCCCcccccCHHHHhccchhHHHHHcCCCEEE
Confidence 976 321 2345999999995 79999999999765
No 17
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=98.00 E-value=8.7e-06 Score=73.18 Aligned_cols=81 Identities=16% Similarity=0.275 Sum_probs=56.2
Q ss_pred eeEEecCccceEEecCCCCCCceeeEEeCCCCC--CCeeeccCC---CC--CCCCccEEEeeeeccC------CCCcccc
Q psy9005 6 YSILRLSPWATYVTEPPVVGHAYEQRIWNPKPQ--DKHKWTSSK---PK--KPDNLKIYESHVGICT------QEQKCAS 72 (99)
Q Consensus 6 ~~~dRIPawa~~v~q~~~~~~~f~~~~w~P~~~--~~Y~~k~~~---p~--~p~~LrIYEaHVGmss------ee~kV~T 72 (99)
+....++|||+.+..+.. .++++++... ++..|...+ |. .+..+.|||+||+==| ++..-|+
T Consensus 203 ~~~~v~DPYA~als~n~~-----~S~VvDl~~~~~~p~~W~~~~~p~p~~~~~~d~iIYElHVRDFS~~d~s~~~~~rGt 277 (898)
T TIGR02103 203 ETYLVTDPYSVSLSANSE-----YSQVVDLNDPALKPEGWDALAMPKPQLASFADMVLYELHIRDFSANDESVPAELRGK 277 (898)
T ss_pred CCeEEeCcCcceEcCCCC-----CeEEeCCccccCCCcchhhcccccCCcCCCcccEEEEEeccccccCCCCCCcCcCce
Confidence 346679999999876432 5677776431 456787654 32 4588999999999722 2234599
Q ss_pred hHHhHhh------hhhhhhccCCcc
Q psy9005 73 YEDFVRV------HEERNLAATVTS 91 (99)
Q Consensus 73 Y~eF~~~------VLPrIk~lG~~~ 91 (99)
|.-|++. .|+.+++||+|.
T Consensus 278 Yla~tE~~t~gi~hLk~L~eLGVTh 302 (898)
T TIGR02103 278 YLAFTAADSAGVQHLKKLADAGVTH 302 (898)
T ss_pred eeehhccchhhhHHHHHHHhCCCcE
Confidence 9999986 466666789985
No 18
>PLN02877 alpha-amylase/limit dextrinase
Probab=97.70 E-value=7.4e-05 Score=67.90 Aligned_cols=80 Identities=19% Similarity=0.273 Sum_probs=51.1
Q ss_pred eEEecCccceEEecCCCCCCceeeEEeCCCC--CCCeeecc---CCC--CCCCCccEEEeeeec-cCCC-----Ccccch
Q psy9005 7 SILRLSPWATYVTEPPVVGHAYEQRIWNPKP--QDKHKWTS---SKP--KKPDNLKIYESHVGI-CTQE-----QKCASY 73 (99)
Q Consensus 7 ~~dRIPawa~~v~q~~~~~~~f~~~~w~P~~--~~~Y~~k~---~~p--~~p~~LrIYEaHVGm-ssee-----~kV~TY 73 (99)
...-++|||+-+..+.. .+++-++.. -++..|.. ++| ..+..+.|||+||+= +... ..-|||
T Consensus 291 ~~~v~DPYA~als~ng~-----~S~vvDl~~~~~~p~gW~~~~~~~p~~~~~~D~VIYElHVRDFS~~d~sv~~~~RGty 365 (970)
T PLN02877 291 TCYANDPYARGLSADGR-----RTLLVDLDSDDLKPEGWDNLAKEKPCLLSFSDISIYELHVRDFSANDETVHPDFRGGY 365 (970)
T ss_pred ccccCCccceEEecCCC-----ceEEECCccccCCChhhhhcccccCccCCCcccEEEEEeccccccCCCCCCcCCCCcc
Confidence 44568999999876432 233334331 13456765 344 245789999999996 3222 234999
Q ss_pred HHhHhh------hhhhhhccCCcc
Q psy9005 74 EDFVRV------HEERNLAATVTS 91 (99)
Q Consensus 74 ~eF~~~------VLPrIk~lG~~~ 91 (99)
.-|++. .|+.+++||+|.
T Consensus 366 lgftE~~s~gi~hLk~LkelGVTh 389 (970)
T PLN02877 366 LAFTSQDSAGVLHLKKLADAGLTH 389 (970)
T ss_pred hhhhhhhhhHHHHHHHHHHcCCCE
Confidence 999986 355666669985
No 19
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=97.18 E-value=0.00048 Score=60.80 Aligned_cols=51 Identities=25% Similarity=0.380 Sum_probs=39.9
Q ss_pred eeeccCCCC-CC-CCccEEEeeeec-c-----CCCCcccchHHhHhh-hhhhhhccCCcc
Q psy9005 41 HKWTSSKPK-KP-DNLKIYESHVGI-C-----TQEQKCASYEDFVRV-HEERNLAATVTS 91 (99)
Q Consensus 41 Y~~k~~~p~-~p-~~LrIYEaHVGm-s-----see~kV~TY~eF~~~-VLPrIk~lG~~~ 91 (99)
|.|+.++|+ .| ....|||+||.= + .++..-|||.-|++. +|+++|+||+|.
T Consensus 157 ~~w~~~~~~~~p~~~~vIYE~HVr~fT~~~~~v~~~~rGTy~gl~~~~~i~yLk~LGvta 216 (697)
T COG1523 157 FDWENDKPPRIPWEDTVIYEAHVRDFTQLHPGVPEELRGTYLGLAEPVIIDYLKDLGVTA 216 (697)
T ss_pred cccccCCCCCCCccceEEEEeeecccccCCCCCchhhccceehhccccHHHHHHHhCCce
Confidence 889888664 34 788899999964 3 234445999999886 599999999985
No 20
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=96.88 E-value=0.0012 Score=61.09 Aligned_cols=54 Identities=13% Similarity=0.134 Sum_probs=39.5
Q ss_pred CeeeccCCCC-CC-CCccEEEeeeec-cCC-----CCcccchHHhH-hhhhhhhhccCCcccc
Q psy9005 40 KHKWTSSKPK-KP-DNLKIYESHVGI-CTQ-----EQKCASYEDFV-RVHEERNLAATVTSSW 93 (99)
Q Consensus 40 ~Y~~k~~~p~-~p-~~LrIYEaHVGm-sse-----e~kV~TY~eF~-~~VLPrIk~lG~~~~~ 93 (99)
+|.|...++. .| ....|||+||+- +.. ..--|+|+.+. ...||+||+||||.-|
T Consensus 143 ~~~W~~~~~~~~~~~d~vIYE~hvr~ft~~~~~~gg~~~Gt~~~l~~~~~i~yLk~LGvt~I~ 205 (1221)
T PRK14510 143 PFTWAPRSPLHGDWDDSPLYEMNVRGFTLRHDFFPGNLRGTFAKLAAPEAISYLKKLGVSIVE 205 (1221)
T ss_pred ccccCCCCCCCCCcccCeEEEEccchhhccCCCCCcccCcHHhhcCCchhHHHHHHcCCCEEE
Confidence 4889877653 23 566799999965 322 23358999999 3469999999999755
No 21
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=94.19 E-value=0.04 Score=46.45 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=33.5
Q ss_pred CccEEEeeeec--cCCCCcccchHHhHhhhhhhhhccCCcccc
Q psy9005 53 NLKIYESHVGI--CTQEQKCASYEDFVRVHEERNLAATVTSSW 93 (99)
Q Consensus 53 ~LrIYEaHVGm--ssee~kV~TY~eF~~~VLPrIk~lG~~~~~ 93 (99)
...|||.||.- .+....+|+++-.+++ ||+|++||+|.-|
T Consensus 5 ~~viYqi~~~~f~d~~~~~~Gdl~gi~~~-Ldyl~~LGv~~i~ 46 (539)
T TIGR02456 5 DAVFYEVHVRSFFDSNGDGIGDFPGLTSK-LDYLKWLGVDALW 46 (539)
T ss_pred cceEEEEehhHhhcCCCCCccCHHHHHHh-HHHHHHCCCCEEE
Confidence 45699999987 3334569999999998 9999999999876
No 22
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=92.06 E-value=0.13 Score=43.63 Aligned_cols=41 Identities=10% Similarity=0.043 Sum_probs=33.8
Q ss_pred CccEEEeeeec--cCCCCcccchHHhHhhhhhhhhccCCccccc
Q psy9005 53 NLKIYESHVGI--CTQEQKCASYEDFVRVHEERNLAATVTSSWK 94 (99)
Q Consensus 53 ~LrIYEaHVGm--ssee~kV~TY~eF~~~VLPrIk~lG~~~~~~ 94 (99)
...|||.|+.- .+....+|+++..++. |++|++||||.-|-
T Consensus 4 ~~v~Y~i~~~~f~~~~~~~~G~~~gi~~~-l~yl~~lG~~~i~l 46 (543)
T TIGR02403 4 KKVIYQIYPKSFYDSTGDGTGDLRGIIEK-LDYLKKLGVDYIWL 46 (543)
T ss_pred cCEEEEEEhHHHhcCCCCCccCHHHHHHh-HHHHHHcCCCEEEE
Confidence 34699999987 3445668999999998 89999999998763
No 23
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=90.21 E-value=0.25 Score=42.19 Aligned_cols=41 Identities=15% Similarity=0.054 Sum_probs=33.7
Q ss_pred CccEEEeeeec--cCCCCcccchHHhHhhhhhhhhccCCccccc
Q psy9005 53 NLKIYESHVGI--CTQEQKCASYEDFVRVHEERNLAATVTSSWK 94 (99)
Q Consensus 53 ~LrIYEaHVGm--ssee~kV~TY~eF~~~VLPrIk~lG~~~~~~ 94 (99)
.-.||+.++.- .+....+|+++..+++ |++|++||+|.-|-
T Consensus 10 ~~v~Yqi~~~~f~d~~~~~~Gdl~gi~~~-ldyl~~lGv~~i~l 52 (551)
T PRK10933 10 NGVIYQIYPKSFQDTTGSGTGDLRGVTQR-LDYLQKLGVDAIWL 52 (551)
T ss_pred cCeEEEEEchHhhcCCCCCCcCHHHHHHh-hHHHHhCCCCEEEE
Confidence 34699999987 3445668999999998 99999999998763
No 24
>smart00642 Aamy Alpha-amylase domain.
Probab=84.02 E-value=0.77 Score=33.33 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=21.4
Q ss_pred ccchHHhHhhhhhhhhccCCcccc
Q psy9005 70 CASYEDFVRVHEERNLAATVTSSW 93 (99)
Q Consensus 70 V~TY~eF~~~VLPrIk~lG~~~~~ 93 (99)
.|+++..+++ |++|++||||.-|
T Consensus 15 ~G~~~gi~~~-l~yl~~lG~~~I~ 37 (166)
T smart00642 15 GGDLQGIIEK-LDYLKDLGVTAIW 37 (166)
T ss_pred CcCHHHHHHH-HHHHHHCCCCEEE
Confidence 8999999998 9999999999866
No 25
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=60.11 E-value=4.8 Score=34.15 Aligned_cols=59 Identities=14% Similarity=0.086 Sum_probs=45.6
Q ss_pred ceeeEEeCCCCCCCeeeccCCCCCCCCccEEEeeeeccCCCCcccchHHhHhhhhhhhhccCC
Q psy9005 27 AYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYEDFVRVHEERNLAATV 89 (99)
Q Consensus 27 ~f~~~~w~P~~~~~Y~~k~~~p~~p~~LrIYEaHVGmssee~kV~TY~eF~~~VLPrIk~lG~ 89 (99)
.||-++-||| |.-....+......+-||-|+...+.+....-|+.+.+.+...++..|.
T Consensus 206 ~fDlIvsNPP----Yi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~ 264 (506)
T PRK01544 206 KFDFIVSNPP----YISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGK 264 (506)
T ss_pred CccEEEECCC----CCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCE
Confidence 5999999999 8776666554555556999999988888888899998886666666653
No 26
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=52.77 E-value=8.4 Score=29.69 Aligned_cols=58 Identities=7% Similarity=0.056 Sum_probs=42.4
Q ss_pred ceeeEEeCCCCCCCeeeccCCCCCCCCccEEEeeeeccCCCCcccchHHhHhhhhhhhhccCC
Q psy9005 27 AYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYEDFVRVHEERNLAATV 89 (99)
Q Consensus 27 ~f~~~~w~P~~~~~Y~~k~~~p~~p~~LrIYEaHVGmssee~kV~TY~eF~~~VLPrIk~lG~ 89 (99)
.|+.++=||| |.-...-...+.. +-||-|....+.+....-|+.+.+.+...++..|+
T Consensus 182 ~fDlIvsNPP----yi~~~~~~~~~~~-~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~ 239 (284)
T TIGR00536 182 KIDIIVSNPP----YIDEEDLADLPNV-VRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGF 239 (284)
T ss_pred CccEEEECCC----CCCcchhhcCCcc-cccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCE
Confidence 6899999999 7654443333333 45999888877777778889999987777777664
No 27
>PLN00196 alpha-amylase; Provisional
Probab=50.38 E-value=8.8 Score=32.12 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=19.4
Q ss_pred cchHHhHhhhhhhhhccCCccccc
Q psy9005 71 ASYEDFVRVHEERNLAATVTSSWK 94 (99)
Q Consensus 71 ~TY~eF~~~VLPrIk~lG~~~~~~ 94 (99)
+.|+..+++ ||+|++||||.-|-
T Consensus 41 g~~~~i~~k-ldyL~~LGvtaIWL 63 (428)
T PLN00196 41 GWYNFLMGK-VDDIAAAGITHVWL 63 (428)
T ss_pred cCHHHHHHH-HHHHHHcCCCEEEe
Confidence 368888887 99999999998773
No 28
>PRK09505 malS alpha-amylase; Reviewed
Probab=49.58 E-value=9.2 Score=34.07 Aligned_cols=24 Identities=8% Similarity=0.088 Sum_probs=21.4
Q ss_pred ccchHHhHhhhhhhhhccCCccccc
Q psy9005 70 CASYEDFVRVHEERNLAATVTSSWK 94 (99)
Q Consensus 70 V~TY~eF~~~VLPrIk~lG~~~~~~ 94 (99)
-|+++-.+++ |++|++||||.-|-
T Consensus 226 GGdl~Gi~~k-Ldyl~~LGv~aIwl 249 (683)
T PRK09505 226 GGDLRGLTEK-LDYLQQLGVNALWI 249 (683)
T ss_pred CCCHHHHHHh-hHHHHHcCCCEEEe
Confidence 3889999999 99999999998873
No 29
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=40.41 E-value=17 Score=27.05 Aligned_cols=60 Identities=10% Similarity=0.041 Sum_probs=40.1
Q ss_pred CceeeEEeCCCCCCCeeeccCCCCCCCCccEEEeeeeccCCCCcccchHHhHhhhhhhhhccCC
Q psy9005 26 HAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYEDFVRVHEERNLAATV 89 (99)
Q Consensus 26 ~~f~~~~w~P~~~~~Y~~k~~~p~~p~~LrIYEaHVGmssee~kV~TY~eF~~~VLPrIk~lG~ 89 (99)
..|+.++=||| |.=...-...+..++-||.|....+.+....-|+.|.+++...++..|+
T Consensus 174 ~~fD~Iv~npP----y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~ 233 (275)
T PRK09328 174 GRFDLIVSNPP----YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGW 233 (275)
T ss_pred CceeEEEECCC----cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCE
Confidence 46899999998 6432222223455666888887776667777788888776666666653
No 30
>PRK10785 maltodextrin glucosidase; Provisional
Probab=39.45 E-value=16 Score=31.51 Aligned_cols=23 Identities=9% Similarity=-0.047 Sum_probs=20.1
Q ss_pred ccchHHhHhhhhhhhhccCCcccc
Q psy9005 70 CASYEDFVRVHEERNLAATVTSSW 93 (99)
Q Consensus 70 V~TY~eF~~~VLPrIk~lG~~~~~ 93 (99)
-|+++-.+++ |++|++||+|.-|
T Consensus 175 GGDl~GI~~k-LdYL~~LGv~~I~ 197 (598)
T PRK10785 175 GGDLDGISEK-LPYLKKLGVTALY 197 (598)
T ss_pred CcCHHHHHHH-HHHHHHcCCCEEE
Confidence 3788999998 9999999999765
No 31
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=36.98 E-value=17 Score=28.28 Aligned_cols=58 Identities=12% Similarity=0.121 Sum_probs=37.9
Q ss_pred ceeeEEeCCCCCCCeeeccCCCCCCCCccEEEeeeeccCCCCcccchHHhHhhhhhhhhccCC
Q psy9005 27 AYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYEDFVRVHEERNLAATV 89 (99)
Q Consensus 27 ~f~~~~w~P~~~~~Y~~k~~~p~~p~~LrIYEaHVGmssee~kV~TY~eF~~~VLPrIk~lG~ 89 (99)
.|+.++-||| |.=...-...+..++ ||-|....+.+....-|+.|.+.+...++.-|.
T Consensus 189 ~fD~Iv~NPP----y~~~~~~~~l~~~~~-~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~ 246 (284)
T TIGR03533 189 KYDLIVSNPP----YVDAEDMADLPAEYH-HEPELALASGEDGLDLVRRILAEAADHLNENGV 246 (284)
T ss_pred CccEEEECCC----CCCccchhhCCHhhh-cCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCE
Confidence 5899999999 642222122233443 788877766666667778888876666666653
No 32
>PLN02361 alpha-amylase
Probab=36.44 E-value=19 Score=30.07 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=19.4
Q ss_pred chHHhHhhhhhhhhccCCccccc
Q psy9005 72 SYEDFVRVHEERNLAATVTSSWK 94 (99)
Q Consensus 72 TY~eF~~~VLPrIk~lG~~~~~~ 94 (99)
-|+..+++ ||+|++||||.-|-
T Consensus 27 ~w~~i~~k-l~~l~~lG~t~iwl 48 (401)
T PLN02361 27 WWRNLEGK-VPDLAKSGFTSAWL 48 (401)
T ss_pred HHHHHHHH-HHHHHHcCCCEEEe
Confidence 68888998 99999999998773
No 33
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=35.57 E-value=19 Score=30.57 Aligned_cols=58 Identities=10% Similarity=0.157 Sum_probs=40.8
Q ss_pred ceeeEEeCCCCCCCeeeccCCCCCCCCccEEEeeeeccCCCCcccchHHhHhhhhhhhhccCC
Q psy9005 27 AYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYEDFVRVHEERNLAATV 89 (99)
Q Consensus 27 ~f~~~~w~P~~~~~Y~~k~~~p~~p~~LrIYEaHVGmssee~kV~TY~eF~~~VLPrIk~lG~ 89 (99)
.||.++=||| |.-.......+..++ ||-|....+.+....-|+.+.+..-.+++.-|+
T Consensus 319 ~FDLIVSNPP----YI~~~e~~l~~~~v~-~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~ 376 (423)
T PRK14966 319 KWDIIVSNPP----YIENGDKHLLQGDLR-FEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGF 376 (423)
T ss_pred CccEEEECCC----CCCcchhhhcchhhh-cCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcE
Confidence 5999999999 754333323334455 899998888788888899999874446665553
No 34
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=33.00 E-value=22 Score=29.63 Aligned_cols=23 Identities=13% Similarity=0.255 Sum_probs=19.7
Q ss_pred cchHHhHhhhhhhhhccCCccccc
Q psy9005 71 ASYEDFVRVHEERNLAATVTSSWK 94 (99)
Q Consensus 71 ~TY~eF~~~VLPrIk~lG~~~~~~ 94 (99)
.+|+.-+++ |++|++||||.-|-
T Consensus 19 ~~~~~I~~k-ldyl~~LGvtaIwl 41 (479)
T PRK09441 19 KLWNRLAER-APELAEAGITAVWL 41 (479)
T ss_pred cHHHHHHHH-HHHHHHcCCCEEEe
Confidence 567888998 99999999998763
No 35
>PF10524 NfI_DNAbd_pre-N: Nuclear factor I protein pre-N-terminus; InterPro: IPR019548 Nuclear factor I (NF-I) or CCAAT box-binding transcription factor (CTF) [, ] (also known as TGGCA-binding proteins) are a family of vertebrate nuclear proteins which recognise and bind, as dimers, the palindromic DNA sequence 5'-TGGCANNNTGCCA-3'. CTF/NF-I binding sites are present in viral and cellular promoters and in the origin of DNA replication of Human adenovirus 2 (HAdV-2). The CTF/NF-I proteins were first identified as nuclear factor I, a collection of proteins that activate the replication of several Adenovirus serotypes (together with NF-II and NF-III) []. The family of proteins was also identified as the CTF transcription factors, before the NFI and CTF families were found to be identical []. The CTF/NF-I proteins are individually capable of activating transcription and DNA replication. In a given species, there are a large number of different CTF/NF-I proteins, generated both by alternative splicing and by the occurrence of four different genes. CTF/NF-1 proteins contain 400 to 600 amino acids. The N-terminal 200 amino-acid sequence, almost perfectly conserved in all species and genes sequenced, mediates site-specific DNA recognition, protein dimerisation and Adenovirus DNA replication. The C-terminal 100 amino acids contain the transcriptional activation domain. This activation domain is the target of gene expression regulatory pathways elicited by growth factors and it interacts with basal transcription factors and with histone H3 []. This entry represents the N terminus, of which 200 residues contain the DNA-binding and dimerisation domain, but also has an 8-47 residue highly conserved region 5' of this, whose function is not known. Deletion of the N-terminal 200 amino acids removes the DNA-binding activity, dimerisation-ability and the stimulation of adenovirus DNA replication [].
Probab=32.09 E-value=14 Score=22.39 Aligned_cols=18 Identities=17% Similarity=0.117 Sum_probs=14.9
Q ss_pred hHHhHhhhhhhhhccCCc
Q psy9005 73 YEDFVRVHEERNLAATVT 90 (99)
Q Consensus 73 Y~eF~~~VLPrIk~lG~~ 90 (99)
|--|.+.+||++|+.-||
T Consensus 10 ~hpFiEalLP~Vk~fay~ 27 (44)
T PF10524_consen 10 FHPFIEALLPYVKAFAYT 27 (44)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 556899999999987765
No 36
>TIGR03860 FMN_nitrolo FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family. This model represents a distinctive clade, in which all characterized members are FMN-binding, within the larger family of luciferase-like monooxygenases (LLM), among which there are both FMN- and F420-binding enzymes. A well-characterized member is nitrilotriacetate monooxygenase from Aminobacter aminovorans (Chelatobacter heintzii), where nitrilotriacetate is a chelating agent used in detergents.
Probab=31.00 E-value=28 Score=28.72 Aligned_cols=20 Identities=20% Similarity=0.150 Sum_probs=17.5
Q ss_pred ccchHHhHhhhhhhhhccCC
Q psy9005 70 CASYEDFVRVHEERNLAATV 89 (99)
Q Consensus 70 V~TY~eF~~~VLPrIk~lG~ 89 (99)
..++..|.+.|+|.+++.|.
T Consensus 390 p~~l~~f~~~VvP~L~~rGl 409 (422)
T TIGR03860 390 PGGLEDFVDLVVPELQRRGL 409 (422)
T ss_pred cccHHHHHHhcCHHhccCCC
Confidence 37899999999999999884
No 37
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=30.20 E-value=27 Score=27.87 Aligned_cols=24 Identities=8% Similarity=0.093 Sum_probs=21.4
Q ss_pred cccchHHhHhhhhhhhhccCCcccc
Q psy9005 69 KCASYEDFVRVHEERNLAATVTSSW 93 (99)
Q Consensus 69 kV~TY~eF~~~VLPrIk~lG~~~~~ 93 (99)
.+|+++--+++ |++|+.||++.-|
T Consensus 24 G~Gdl~Gi~~~-LdYl~~LGv~aiw 47 (505)
T COG0366 24 GGGDLKGITEK-LDYLKELGVDAIW 47 (505)
T ss_pred CcccHHhHHHh-hhHHHHhCCCEEE
Confidence 38999999987 9999999999876
No 38
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=30.13 E-value=34 Score=27.08 Aligned_cols=57 Identities=9% Similarity=0.096 Sum_probs=37.2
Q ss_pred ceeeEEeCCCCCCCeeeccCCCCCCCCccEEEeeeeccCCCCcccchHHhHhhhhhhhhccC
Q psy9005 27 AYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYEDFVRVHEERNLAAT 88 (99)
Q Consensus 27 ~f~~~~w~P~~~~~Y~~k~~~p~~p~~LrIYEaHVGmssee~kV~TY~eF~~~VLPrIk~lG 88 (99)
.|+.++=||| |.=...-...+..++ ||-+....+.+....-|+.|.+.+...++.-|
T Consensus 201 ~fDlIvsNPP----yi~~~~~~~l~~~~~-~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG 257 (307)
T PRK11805 201 RYDLIVSNPP----YVDAEDMADLPAEYR-HEPELALAAGDDGLDLVRRILAEAPDYLTEDG 257 (307)
T ss_pred CccEEEECCC----CCCccchhhcCHhhc-cCccceeeCCCchHHHHHHHHHHHHHhcCCCC
Confidence 5899999998 643222112233444 77777776666677778888887666666655
No 39
>KOG0471|consensus
Probab=28.05 E-value=28 Score=29.95 Aligned_cols=39 Identities=10% Similarity=0.090 Sum_probs=28.8
Q ss_pred EEEeeeec--cCCCCcccchHHhHhhhhhhhhccCCccccce
Q psy9005 56 IYESHVGI--CTQEQKCASYEDFVRVHEERNLAATVTSSWKR 95 (99)
Q Consensus 56 IYEaHVGm--ssee~kV~TY~eF~~~VLPrIk~lG~~~~~~~ 95 (99)
||+.=..- .+....+|+++-=+++ |.+|+++|+|..|..
T Consensus 20 ~YQI~~~sF~~s~~d~~G~~~GI~~k-ldyi~~lG~taiWis 60 (545)
T KOG0471|consen 20 IYQIYPDSFADSDGDGVGDLKGITSK-LDYIKELGFTAIWLS 60 (545)
T ss_pred eeEEeccccccccCCCccccccchhh-hhHHHhcCCceEEeC
Confidence 45443333 3444556999999998 999999999999964
No 40
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=27.62 E-value=33 Score=33.61 Aligned_cols=25 Identities=0% Similarity=-0.162 Sum_probs=21.3
Q ss_pred CcccchHHhHhhhhhhhhccCCcccc
Q psy9005 68 QKCASYEDFVRVHEERNLAATVTSSW 93 (99)
Q Consensus 68 ~kV~TY~eF~~~VLPrIk~lG~~~~~ 93 (99)
.-.|+|.++.+. |++|+++|||.-|
T Consensus 126 K~mG~~~~w~~~-L~~ik~lGyN~Ih 150 (1464)
T TIGR01531 126 KLLGPLSEWEPR-LRVAKEKGYNMIH 150 (1464)
T ss_pred hhcCCHHHHHHH-HHHHHHcCCCEEE
Confidence 457999998886 9999999999654
No 41
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=26.09 E-value=27 Score=26.65 Aligned_cols=58 Identities=9% Similarity=-0.090 Sum_probs=33.9
Q ss_pred ceeeEEeCCCCCCCeeeccCCCCCCCCccEEEeeeeccCCCCcccchHHhHhhhhhhhhccC
Q psy9005 27 AYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYEDFVRVHEERNLAAT 88 (99)
Q Consensus 27 ~f~~~~w~P~~~~~Y~~k~~~p~~p~~LrIYEaHVGmssee~kV~TY~eF~~~VLPrIk~lG 88 (99)
.|+-++-||| |.-...-...+...+-||.+....+.+....-|+.+.+..-..++.-|
T Consensus 153 ~fDlVv~NPP----y~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG 210 (251)
T TIGR03704 153 RVDILAANAP----YVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGG 210 (251)
T ss_pred CEeEEEECCC----CCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCC
Confidence 5899999999 643222112233445566665555545555556777766555665555
No 42
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=25.69 E-value=38 Score=31.18 Aligned_cols=23 Identities=9% Similarity=0.060 Sum_probs=19.7
Q ss_pred ccchHHhHhhhhhhhhccCCcccc
Q psy9005 70 CASYEDFVRVHEERNLAATVTSSW 93 (99)
Q Consensus 70 V~TY~eF~~~VLPrIk~lG~~~~~ 93 (99)
-+||+..++. ||+|++||||.-|
T Consensus 12 ~~tf~~~~~~-L~YL~~LGv~~V~ 34 (825)
T TIGR02401 12 GFTFDDAAAL-LPYLKSLGVSHLY 34 (825)
T ss_pred CCCHHHHHHh-hHHHHHcCCCEEE
Confidence 4688898886 9999999999765
No 43
>PF12634 Inp1: Inheritance of peroxisomes protein 1; InterPro: IPR024758 Inp1 is a peroxisomal membrane protein that binds Pex25p, Pex30p, and Vps1p, all of which are involved in controlling peroxisome division. The levels of Inp1p vary with the cell cycle, and Inp1 acts as a factor that retains peroxisomes in cells and controls peroxisome division []. Inp1p promotes the retention of peroxisomes in mother cells and buds of budding yeast by attaching peroxisomes to as-yet-unidentified cortical structures [].; GO: 0045033 peroxisome inheritance, 0005780 extrinsic to intraperoxisomal membrane
Probab=23.82 E-value=36 Score=24.85 Aligned_cols=35 Identities=17% Similarity=0.178 Sum_probs=25.9
Q ss_pred CCCccEEEeeee-ccCCCCcccchHHhHhhhhhhhhccCC
Q psy9005 51 PDNLKIYESHVG-ICTQEQKCASYEDFVRVHEERNLAATV 89 (99)
Q Consensus 51 p~~LrIYEaHVG-mssee~kV~TY~eF~~~VLPrIk~lG~ 89 (99)
..+|+||.+|-| |+= -.+| ..|..-+||+++=.-+
T Consensus 62 ~G~leIyqi~~~~v~f--Ls~G--~~~v~PiLPK~q~~~v 97 (145)
T PF12634_consen 62 HGPLEIYQIPGSDVAF--LSCG--GSIVHPILPKLQCWRV 97 (145)
T ss_pred cCCEEEEEecCCceee--eecC--chheecccccccEEEE
Confidence 589999999999 531 2233 6788899998876555
No 44
>PF08052 PyrBI_leader: PyrBI operon leader peptide; InterPro: IPR012602 This family consists of the pyrBI operon leader peptides. The expression of the pyrBI operon, which encodes the subunits of the pyrimidine biosynthetic enzyme aspartate transcarbamylase. is regulated primarily through a UTP-sensitive transcriptional attenuation control mechanism. In this mechanism, the concentration of UTP determines the extent of coupling between transcription and translation within the pyrBI leader region, hence determining the level of rho-independent transcriptional termination at an attenuator preceding the pyrB gene [].; GO: 0019856 pyrimidine base biosynthetic process
Probab=23.52 E-value=35 Score=20.49 Aligned_cols=12 Identities=8% Similarity=-0.238 Sum_probs=9.1
Q ss_pred hHhhhhhhhhcc
Q psy9005 76 FVRVHEERNLAA 87 (99)
Q Consensus 76 F~~~VLPrIk~l 87 (99)
.+..||||+|+.
T Consensus 5 vrh~vlprlk~d 16 (44)
T PF08052_consen 5 VRHSVLPRLKKD 16 (44)
T ss_pred hhhhhhhhhhcc
Confidence 457899999863
No 45
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=23.14 E-value=29 Score=28.57 Aligned_cols=41 Identities=20% Similarity=0.248 Sum_probs=36.0
Q ss_pred cEEEeeeec----cCCCCcccchHHhHhhhhhhhhccCCcccccee
Q psy9005 55 KIYESHVGI----CTQEQKCASYEDFVRVHEERNLAATVTSSWKRE 96 (99)
Q Consensus 55 rIYEaHVGm----ssee~kV~TY~eF~~~VLPrIk~lG~~~~~~~~ 96 (99)
+||=||=|| |++.+.+..|..+... +|+.+++-++.|+..+
T Consensus 38 rillA~EGINgtvsG~~e~~~~~~~~l~a-~~~f~~l~~K~s~~~~ 82 (308)
T COG1054 38 RILLAHEGINGTVSGSAEAIEAYMAWLRA-DPGFADLRFKISEADE 82 (308)
T ss_pred EEEEccCCcceeEecCHHHHHHHHHHHHh-CcccccceeeeccccC
Confidence 799999999 7888899999999998 8899999998887544
No 46
>PF04796 RepA_C: Plasmid encoded RepA protein; InterPro: IPR006881 This is a family of plasmid encoded proteins involved in plasmid replication. The role of RepA in the replication process is not clearly understood [].
Probab=22.65 E-value=50 Score=24.40 Aligned_cols=34 Identities=15% Similarity=0.259 Sum_probs=28.2
Q ss_pred eeccCCCCcccchHHhHhhhhhhhhccCCccccce
Q psy9005 61 VGICTQEQKCASYEDFVRVHEERNLAATVTSSWKR 95 (99)
Q Consensus 61 VGmssee~kV~TY~eF~~~VLPrIk~lG~~~~~~~ 95 (99)
+|++...++-|||+.|.+. +-|+.++.++..++.
T Consensus 39 lG~~~tGG~~g~~~~lreQ-~~rL~~~~i~~~~~~ 72 (161)
T PF04796_consen 39 LGLSPTGGRRGTITRLREQ-MERLFACRITIGFND 72 (161)
T ss_pred hCCCCCCCCcccHHHHHHH-HHHHHhheEEEEECC
Confidence 4667767888999999998 999999888877664
No 47
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=21.92 E-value=56 Score=21.97 Aligned_cols=31 Identities=26% Similarity=0.260 Sum_probs=23.2
Q ss_pred CCCcccchHHhHhhh---hhhhhccCCcccccee
Q psy9005 66 QEQKCASYEDFVRVH---EERNLAATVTSSWKRE 96 (99)
Q Consensus 66 ee~kV~TY~eF~~~V---LPrIk~lG~~~~~~~~ 96 (99)
.++...||.+|.+.| .|.++.-+|+..|+.|
T Consensus 22 ~~~~~~s~~~L~~~V~~~f~~l~~~~ftlky~De 55 (87)
T cd06402 22 DEDVSTSYEYLVEKVAAVFPSLRGKNFQLFWKDE 55 (87)
T ss_pred cCCCCcCHHHHHHHHHHHccccCCCcEEEEEECC
Confidence 345567888887765 5677777999999876
No 48
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=21.82 E-value=53 Score=28.01 Aligned_cols=22 Identities=5% Similarity=-0.044 Sum_probs=19.0
Q ss_pred cccchHHhHhhhhhhhhccCCcc
Q psy9005 69 KCASYEDFVRVHEERNLAATVTS 91 (99)
Q Consensus 69 kV~TY~eF~~~VLPrIk~lG~~~ 91 (99)
-.|.|.+..+. |++|+++|||-
T Consensus 17 ~~G~~~~W~~~-l~~~~~~GYNm 38 (423)
T PF14701_consen 17 WMGPFSDWEKH-LKVISEKGYNM 38 (423)
T ss_pred hcCCHhHHHHH-HHHHHHcCCcE
Confidence 47888888886 99999999984
No 49
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=21.79 E-value=65 Score=26.61 Aligned_cols=33 Identities=27% Similarity=0.457 Sum_probs=25.8
Q ss_pred CCCCCccE-----EEeeeec--cCCCCcccchHHhHhhhh
Q psy9005 49 KKPDNLKI-----YESHVGI--CTQEQKCASYEDFVRVHE 81 (99)
Q Consensus 49 ~~p~~LrI-----YEaHVGm--ssee~kV~TY~eF~~~VL 81 (99)
..|+.+.| ||..||. .--+|.+-||+||-+-|-
T Consensus 125 ~D~~~vviDtRN~YE~~iG~F~gAv~p~~~tFrefP~~v~ 164 (308)
T COG1054 125 SDPDVVVIDTRNDYEVAIGHFEGAVEPDIETFREFPAWVE 164 (308)
T ss_pred cCCCeEEEEcCcceeEeeeeecCccCCChhhhhhhHHHHH
Confidence 44566666 9999999 455899999999987653
No 50
>PF05608 DUF778: Protein of unknown function (DUF778); InterPro: IPR008496 This family consists of several eukaryotic proteins of unknown function.
Probab=21.76 E-value=35 Score=24.81 Aligned_cols=15 Identities=27% Similarity=0.760 Sum_probs=12.9
Q ss_pred eeeeccCCCCcccch
Q psy9005 59 SHVGICTQEQKCASY 73 (99)
Q Consensus 59 aHVGmssee~kV~TY 73 (99)
-||||+.+++.|..|
T Consensus 12 GH~GIc~s~GvI~DF 26 (136)
T PF05608_consen 12 GHMGICDSDGVIRDF 26 (136)
T ss_pred cceEeecCCceEEec
Confidence 499999999988766
No 51
>PRK01415 hypothetical protein; Validated
Probab=20.16 E-value=38 Score=26.59 Aligned_cols=41 Identities=7% Similarity=-0.026 Sum_probs=34.7
Q ss_pred cEEEeeeec----cCCCCcccchHHhHhhhhhhhhccCCcccccee
Q psy9005 55 KIYESHVGI----CTQEQKCASYEDFVRVHEERNLAATVTSSWKRE 96 (99)
Q Consensus 55 rIYEaHVGm----ssee~kV~TY~eF~~~VLPrIk~lG~~~~~~~~ 96 (99)
+||=|+=|| |++...+..|.++... +|+++++-++.||..+
T Consensus 38 ~i~la~EGIN~tisg~~~~~~~~~~~l~~-~~~~~~~~~k~s~~~~ 82 (247)
T PRK01415 38 TILLANEGFNGSFSGSYENVNLVLEELIK-LTGPKDVNVKINYSDV 82 (247)
T ss_pred EEEEccCccceEeeCCHHHHHHHHHHHHh-CcCCCCceeecccccC
Confidence 799999999 6777778888888887 8999999999887643
Done!