RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy9005
         (99 letters)



>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE;
           1.70A {Oryza sativa japonica group} PDB: 3amk_A
          Length = 755

 Score = 68.9 bits (169), Expect = 2e-15
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 8   ILRLSPWATYVTEPP-VVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQ 66
           + R+  W  Y T      G  Y+   W+P   +++ +   +P KPD  +IYE+HVG+  +
Sbjct: 134 VDRIPAWIRYATFDASKFGAPYDGVHWDPPACERYVFKHPRPPKPDAPRIYEAHVGMSGE 193

Query: 67  EQKCASYEDF 76
           E + ++Y +F
Sbjct: 194 EPEVSTYREF 203


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 32.5 bits (73), Expect = 0.013
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 12/60 (20%)

Query: 29  EQRIWNPKPQDKHKWTSSKPKKPD--NLKIYESHVGIC----TQEQKCASYEDFVRVHEE 82
           EQ+I +    D   W +S         LK Y+ +  IC      E+   +  DF+   EE
Sbjct: 504 EQKIRH----DSTAWNASGSILNTLQQLKFYKPY--ICDNDPKYERLVNAILDFLPKIEE 557


>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel,
           alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus
           solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A*
           3vgh_A* 3vgg_A* 1eha_A
          Length = 558

 Score = 27.2 bits (61), Expect = 0.75
 Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 18/60 (30%)

Query: 13  PWATYVTEPP-----VVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQE 67
           P + Y  E       ++  + E   +     +   +   +      L IYE HVG  T E
Sbjct: 69  PASRYQPEGVHGPSQIIQESKE---F----NN-ETFLKKED-----LIIYEIHVGTFTPE 115


>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin
           interacting motif, UBA domain, NESG, northeas structural
           genomics consortium, SGC; NMR {Homo sapiens}
          Length = 129

 Score = 24.8 bits (53), Expect = 4.6
 Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 2/67 (2%)

Query: 18  VTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYE--D 75
           V EP     A E         +K           DN    ++ + +   E      +  D
Sbjct: 60  VKEPSQDTVATEPSEVEGSAANKEVLAKVIDLTHDNKDDLQAAIALSLLESPKIQADGRD 119

Query: 76  FVRVHEE 82
             R+HE 
Sbjct: 120 LNRMHEA 126


>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6;
          structural genomics consortium, SGC, chromatin
          regulator, developmental protein; 1.75A {Homo sapiens}
          PDB: 3ld8_A 3ldb_A*
          Length = 336

 Score = 25.0 bits (54), Expect = 5.4
 Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 6/67 (8%)

Query: 24 VGHAYEQRIWNPKPQ------DKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYEDFV 77
          + H  ++RI   K        D   WT     +  +L        +   +    S E+FV
Sbjct: 2  MNHKSKKRIREAKRSARPELKDSLDWTRHNYYESFSLSPAAVADNVERADALQLSVEEFV 61

Query: 78 RVHEERN 84
            +E   
Sbjct: 62 ERYERPY 68


>1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A
           {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1
           c.1.8.1
          Length = 750

 Score = 25.0 bits (55), Expect = 5.8
 Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 1/21 (4%)

Query: 43  WTSSKPKKP-DNLKIYESHVG 62
            T +KP +   +  IYE HV 
Sbjct: 167 STGTKPTRAQKDDVIYEVHVR 187


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.314    0.128    0.406 

Gapped
Lambda     K      H
   0.267   0.0749    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,514,026
Number of extensions: 69537
Number of successful extensions: 87
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 15
Length of query: 99
Length of database: 6,701,793
Length adjustment: 65
Effective length of query: 34
Effective length of database: 4,886,928
Effective search space: 166155552
Effective search space used: 166155552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.4 bits)