RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9005
         (99 letters)



>d1eh9a3 c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrolase,
          central domain {Archaeon Sulfolobus solfataricus, km1
          [TaxId: 2287]}
          Length = 400

 Score = 26.2 bits (56), Expect = 0.83
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 43 WTSSKPKKPDNLKIYESHVGICTQE 67
          + +    K ++L IYE HVG  T E
Sbjct: 1  FNNETFLKKEDLIIYEIHVGTFTPE 25


>d1t27a_ d.129.3.4 (A:) Phoshatidylinositol transfer protein, PITP
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 269

 Score = 24.0 bits (52), Expect = 3.9
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 2   TEKIYSILRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPDNLKIYESH 60
           T KIY +    P    +  P    + +E+  WN  P  +   T+   K+   +KI   H
Sbjct: 58  THKIYHLQSKVPTFVRMLAPEGALNIHEKA-WNAYPYCRTVITNEYMKEDFLIKIETWH 115


>d1m7xa3 c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enzyme,
          central domain {Escherichia coli [TaxId: 562]}
          Length = 396

 Score = 23.0 bits (48), Expect = 8.9
 Identities = 7/39 (17%), Positives = 17/39 (43%), Gaps = 2/39 (5%)

Query: 38 QDKHKWTSSKPKKPDNLKIYESHVGICTQEQKCASYEDF 76
          Q + +  +++   P  + IYE H+G   +      +  +
Sbjct: 3  QTEERKKANQFDAP--ISIYEVHLGSWRRHTDNNFWLSY 39


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.128    0.406 

Gapped
Lambda     K      H
   0.267   0.0413    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 388,313
Number of extensions: 15321
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 5
Length of query: 99
Length of database: 2,407,596
Length adjustment: 61
Effective length of query: 38
Effective length of database: 1,570,066
Effective search space: 59662508
Effective search space used: 59662508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.7 bits)