BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9007
(132 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AML|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 755
Score = 54.7 bits (130), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 21 ISRLSPWATYVT-EPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICTQ 79
+ R+ W Y T + G Y+ W+P +++ + +P KP+ +IYE+HVG+ +
Sbjct: 134 VDRIPAWIRYATFDASKFGAPYDGVHWDPPACERYVFKHPRPPKPDAPRIYEAHVGMSGE 193
Query: 80 EQKCASYEDFVRVVIPRIVKQGDFNNWN 107
E + ++Y +F V+PRI NN+N
Sbjct: 194 EPEVSTYREFADNVLPRIRA----NNYN 217
Score = 27.7 bits (60), Expect = 2.1, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 101 GDFNNWNREEFAYKKLDFGKWEL 123
G+FNNWN + +K FG W +
Sbjct: 83 GEFNNWNGAKHKMEKDKFGIWSI 105
>pdb|3AMK|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 702
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 21 ISRLSPWATYVT-EPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICTQ 79
+ R+ W Y T + G Y+ W+P +++ + +P KP+ +IYE+HVG+ +
Sbjct: 134 VDRIPAWIRYATFDASKFGAPYDGVHWDPPACERYVFKHPRPPKPDAPRIYEAHVGMSGE 193
Query: 80 EQKCASYEDFVRVVIPRIVKQGDFNNWN 107
E + ++Y +F V+PRI NN+N
Sbjct: 194 EPEVSTYREFADNVLPRIRA----NNYN 217
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 101 GDFNNWNREEFAYKKLDFGKWEL 123
G+FNNWN + +K FG W +
Sbjct: 83 GEFNNWNGAKHKMEKDKFGIWSI 105
>pdb|4G9B|A Chain A, Crystal Structure Of Beta-Phosphoglucomutase Homolog From
Escherichia Coli, Target Efi-501172, With Bound Mg, Open
Lid
Length = 243
Score = 30.0 bits (66), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 72 SHVGICTQEQ-----KCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKK 115
+ +GI Q K S ++ +R ++ K+GDFN+ R + AY+K
Sbjct: 32 AEIGISIDAQFNESLKGISRDESLRRILQHGGKEGDFNSQERAQLAYRK 80
>pdb|1ESZ|A Chain A, Structure Of The Periplasmic Ferric Siderophore Binding
Protein Fhud Complexed With Coprogen
pdb|1K2V|N Chain N, E. Coli Periplasmic Protein Fhud Complexed With Desferal
Length = 266
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 77 CTQEQKCASYEDFVRVVIPRIVKQG 101
E A YEDF+R + PR VK+G
Sbjct: 119 SAAETHLAQYEDFIRSMKPRFVKRG 143
>pdb|1K7S|N Chain N, Fhud Complexed With Albomycin-Delta 2
Length = 265
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 77 CTQEQKCASYEDFVRVVIPRIVKQG 101
E A YEDF+R + PR VK+G
Sbjct: 118 SAAETHLAQYEDFIRSMKPRFVKRG 142
>pdb|1EFD|N Chain N, Periplasmic Ferric Siderophore Binding Protein Fhud
Complexed With Gallichrome
Length = 266
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 77 CTQEQKCASYEDFVRVVIPRIVKQG 101
E A YEDF+R + PR VK+G
Sbjct: 119 SAAETHLAQYEDFIRSMKPRFVKRG 143
>pdb|3B9N|A Chain A, Crystal Structure Of Long-Chain Alkane Monooxygenase
(Lada)
pdb|3B9N|B Chain B, Crystal Structure Of Long-Chain Alkane Monooxygenase
(Lada)
pdb|3B9O|A Chain A, Long-Chain Alkane Monooxygenase (Lada) In Complex With
Coenzyme Fmn
pdb|3B9O|B Chain B, Long-Chain Alkane Monooxygenase (Lada) In Complex With
Coenzyme Fmn
Length = 440
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 84 ASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPN 128
++ DF+ +V+P + K+G + + EE Y++ FGK LP +
Sbjct: 384 GTFVDFIELVVPELQKRGLY-RVDYEEGTYREKLFGKGNYRLPDD 427
>pdb|2VSK|A Chain A, Hendra Virus Attachment Glycoprotein In Complex With Human
Cell Surface Receptor Ephrinb2
pdb|2VSK|C Chain C, Hendra Virus Attachment Glycoprotein In Complex With Human
Cell Surface Receptor Ephrinb2
Length = 416
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 41 YEQRIWNP-KPQDKHKWTSSKPKKPENLKIYESHVGICTQEQKCASYEDFVRVVIPRIVK 99
+ +W P P H +S+ + SHVG S+ + + ++ +
Sbjct: 79 FMTNVWTPPNPSTIHHCSSTYHEDFYYTLCAVSHVG--DPILNSTSWTESLSLIRLAVRP 136
Query: 100 QGDFNNWNREEFAYKKLDFGKWELVLPPNPDG 131
+ D ++N++ A K++ GK++ V+P P G
Sbjct: 137 KSDSGDYNQKYIAITKVERGKYDKVMPYGPSG 168
>pdb|2X9M|A Chain A, Hendra Virus Attachment Glycoprotein
pdb|2X9M|B Chain B, Hendra Virus Attachment Glycoprotein
pdb|2X9M|C Chain C, Hendra Virus Attachment Glycoprotein
pdb|2X9M|D Chain D, Hendra Virus Attachment Glycoprotein
Length = 420
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 41 YEQRIWNP-KPQDKHKWTSSKPKKPENLKIYESHVGICTQEQKCASYEDFVRVVIPRIVK 99
+ +W P P H +S+ + SHVG S+ + + ++ +
Sbjct: 82 FMTNVWTPPNPSTIHHCSSTYHEDFYYTLCAVSHVG--DPILNSTSWTESLSLIRLAVRP 139
Query: 100 QGDFNNWNREEFAYKKLDFGKWELVLPPNPDG 131
+ D ++N++ A K++ GK++ V+P P G
Sbjct: 140 KSDSGDYNQKYIAITKVERGKYDKVMPYGPSG 171
>pdb|3K2K|A Chain A, Crystal Structure Of Putative Carboxypeptidase
(Yp_103406.1) From Burkholderia Mallei Atcc 23344 At
2.49 A Resolution
Length = 403
Score = 26.9 bits (58), Expect = 3.3, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 76 ICTQEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGS 132
I Q + E F+ ++ R+V GD W+ + A K D + +V NPDGS
Sbjct: 186 IARQHPGESXAEWFIEGLVKRLVGWGD---WSGDPVARKLYDHATFYIVPNXNPDGS 239
>pdb|3FG4|A Chain A, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|B Chain B, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|C Chain C, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|D Chain D, Crystal Structure Of Delta413-417:gs I805a Lox
Length = 696
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 7 QYITRTLIFRYLLPISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSK 60
+Y L Y+ + L P A + + P E IW P +++H W +K
Sbjct: 322 RYCAAPLALFYVNKLGHLMPIAIQINQEP----GPENPIWTPHEENEHDWMMAK 371
>pdb|3FG1|A Chain A, Crystal Structure Of Delta413-417:gs Lox
pdb|3FG1|B Chain B, Crystal Structure Of Delta413-417:gs Lox
pdb|3FG1|C Chain C, Crystal Structure Of Delta413-417:gs Lox
pdb|3FG1|D Chain D, Crystal Structure Of Delta413-417:gs Lox
Length = 696
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 7 QYITRTLIFRYLLPISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSK 60
+Y L Y+ + L P A + + P E IW P +++H W +K
Sbjct: 322 RYCAAPLALFYVNKLGHLMPIAIQINQEP----GPENPIWTPHEENEHDWMMAK 371
>pdb|3FG3|A Chain A, Crystal Structure Of Delta413-417:gs I805w Lox
pdb|3FG3|B Chain B, Crystal Structure Of Delta413-417:gs I805w Lox
pdb|3FG3|C Chain C, Crystal Structure Of Delta413-417:gs I805w Lox
pdb|3FG3|D Chain D, Crystal Structure Of Delta413-417:gs I805w Lox
Length = 696
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 7 QYITRTLIFRYLLPISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSK 60
+Y L Y+ + L P A + + P E IW P +++H W +K
Sbjct: 322 RYCAAPLALFYVNKLGHLMPIAIQINQEP----GPENPIWTPHEENEHDWMMAK 371
>pdb|2FNQ|A Chain A, Insights From The X-Ray Crystal Structure Of Coral 8r-
Lipoxygenase: Calcium Activation Via A C2-Like Domain
And A Structural Basis Of Product Chirality
pdb|2FNQ|B Chain B, Insights From The X-Ray Crystal Structure Of Coral 8r-
Lipoxygenase: Calcium Activation Via A C2-Like Domain
And A Structural Basis Of Product Chirality
Length = 699
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 7 QYITRTLIFRYLLPISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSK 60
+Y L Y+ + L P A + + P E IW P +++H W +K
Sbjct: 325 RYCAAPLALFYVNKLGHLMPIAIQINQEP----GPENPIWTPHEENEHDWMMAK 374
>pdb|3DY5|A Chain A, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura
Homomalla
pdb|3DY5|C Chain C, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura
Homomalla
Length = 1066
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 7 QYITRTLIFRYLLPISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSK 60
+Y L Y+ + L P A + + P E IW P +++H W +K
Sbjct: 692 RYCAAPLALFYVNKLGHLMPIAIQINQEP----GPENPIWTPHEENEHDWMMAK 741
>pdb|1ISO|A Chain A, Isocitrate Dehydrogenase: Structure Of An Engineered
Nadp+--> Nad+ Specificity-Reversal Mutant
Length = 416
Score = 26.2 bits (56), Expect = 5.7, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 100 QGDFNNWN----REEFAYKKLDFGKWELVLPPN 128
+G F +W REEF + +D G W V PN
Sbjct: 238 EGAFKDWGYQLAREEFGGELIDGGPWLKVKNPN 270
>pdb|1CW1|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase Mutant K230m
Bound To Isocitrate And Mn2+
pdb|1CW4|A Chain A, Crystal Structure Of K230m Isocitrate Dehydrogenase In
Complex With Alpha-Ketoglutarate
pdb|1IDC|A Chain A, Isocitrate Dehydrogenase From E.coli (mutant K230m),
Steady-state Intermediate Complex Determined By Laue
Crystallography
pdb|1IDF|A Chain A, Isocitrate Dehydrogenase K230m Mutant Apo Enzyme
Length = 416
Score = 26.2 bits (56), Expect = 5.7, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 100 QGDFNNWN----REEFAYKKLDFGKWELVLPPN 128
+G F +W REEF + +D G W V PN
Sbjct: 238 EGAFKDWGYQLAREEFGGELIDGGPWLKVKNPN 270
>pdb|1CW7|A Chain A, Low Temperature Structure Of Wild-Type Idh Complexed With
Mg- Isocitrate
Length = 416
Score = 26.2 bits (56), Expect = 5.7, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 100 QGDFNNWN----REEFAYKKLDFGKWELVLPPN 128
+G F +W REEF + +D G W V PN
Sbjct: 238 EGAFKDWGYQLAREEFGGELIDGGPWLKVKNPN 270
>pdb|4AJB|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii) And
Thionadp
pdb|4AJC|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate, Calcium(Ii)
And Adenine Nucleotide Phosphate
pdb|4AJR|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate,
Magnesium(Ii) And Nadph - The Product Complex
pdb|4AJS|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii),
Adenosine 2',5'-Biphosphate And
Ribosylnicotinamide-5'-Phosphate
Length = 416
Score = 26.2 bits (56), Expect = 5.7, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 100 QGDFNNWN----REEFAYKKLDFGKWELVLPPN 128
+G F +W REEF + +D G W V PN
Sbjct: 238 EGAFKDWGYQLAREEFGGELIDGGPWLKVKNPN 270
>pdb|1GRO|A Chain A, Regulatory And Catalytic Mechanisms In Escherichia Coli
Isocitrate Dehydrogenase: Multiple Roles For N115
Length = 416
Score = 26.2 bits (56), Expect = 5.7, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 100 QGDFNNWN----REEFAYKKLDFGKWELVLPPN 128
+G F +W REEF + +D G W V PN
Sbjct: 238 EGAFKDWGYQLAREEFGGELIDGGPWLKVKNPN 270
>pdb|1GRP|A Chain A, Regulatory And Catalytic Mechanisms In Escherichia Coli
Isocitrate Dehydrogenase: Multiple Roles For N115
Length = 416
Score = 26.2 bits (56), Expect = 5.7, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 100 QGDFNNWN----REEFAYKKLDFGKWELVLPPN 128
+G F +W REEF + +D G W V PN
Sbjct: 238 EGAFKDWGYQLAREEFGGELIDGGPWLKVKNPN 270
>pdb|1IDD|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Apo Enzyme
pdb|1IDE|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Steady-State
Intermediate Complex (Laue Determination)
Length = 416
Score = 26.2 bits (56), Expect = 5.7, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 100 QGDFNNWN----REEFAYKKLDFGKWELVLPPN 128
+G F +W REEF + +D G W V PN
Sbjct: 238 EGAFKDWGYQLAREEFGGELIDGGPWLKVKNPN 270
>pdb|1P8F|A Chain A, A Four Location Model To Explain The Stereospecificity Of
Proteins.
pdb|1PB1|A Chain A, A Four Location Model To Explain The Stereospecificity Of
Proteins.
pdb|1PB3|A Chain A, Sites Of Binding And Orientation In A Four Location Model
For Protein Stereospecificity.
pdb|1AI2|A Chain A, Isocitrate Dehydrogenase Complexed With Isocitrate, Nadp+,
And Calcium (flash-cooled)
pdb|1AI3|A Chain A, Orbital Steering In The Catalytic Power Of Enzymes: Small
Structural Changes With Large Catalytic Consequences
pdb|1IKA|A Chain A, Structure Of Isocitrate Dehydrogenase With
Alpha-Ketoglutarate At 2.7 Angstroms Resolution:
Conformational Changes Induced By Decarboxylation Of
Isocitrate
pdb|1SJS|A Chain A, Access To Phosphorylation In Isocitrate Dehydrogenase May
Occur By Domain Shifting
pdb|3ICD|A Chain A, Structure Of A Bacterial Enzyme Regulated By
Phosphorylation, Isocitrate Dehydrogenase
pdb|5ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
pdb|9ICD|A Chain A, Catalytic Mechanism Of Nadp+-Dependent Isocitrate
Dehydrogenase: Implications From The Structures Of
Magnesium-Isocitrate And Nadp+ Complexes
pdb|3LCB|C Chain C, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|3LCB|D Chain D, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|4AJ3|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase In
Complex With Isocitrate, Calcium(Ii) And Nadp - The
Pseudo-Michaelis Complex
pdb|4AJA|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase In
Complex With Isocitrate, Calcium(Ii) And Thionadp
Length = 416
Score = 26.2 bits (56), Expect = 5.9, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 100 QGDFNNWN----REEFAYKKLDFGKWELVLPPN 128
+G F +W REEF + +D G W V PN
Sbjct: 238 EGAFKDWGYQLAREEFGGELIDGGPWLKVKNPN 270
>pdb|6ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
Length = 416
Score = 26.2 bits (56), Expect = 5.9, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 100 QGDFNNWN----REEFAYKKLDFGKWELVLPPN 128
+G F +W REEF + +D G W V PN
Sbjct: 238 EGAFKDWGYQLAREEFGGELIDGGPWLKVKNPN 270
>pdb|4ICD|A Chain A, Regulation Of Isocitrate Dehydrogenase By Phosphorylation
Involves No Long-Range Conformational Change In The Free
Enzyme
Length = 416
Score = 26.2 bits (56), Expect = 5.9, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 100 QGDFNNWN----REEFAYKKLDFGKWELVLPPN 128
+G F +W REEF + +D G W V PN
Sbjct: 238 EGAFKDWGYQLAREEFGGELIDGGPWLKVKNPN 270
>pdb|1BL5|A Chain A, Isocitrate Dehydrogenase From E. Coli Single Turnover Laue
Structure Of Rate-limited Product Complex, 10 Msec Time
Resolution
Length = 414
Score = 26.2 bits (56), Expect = 5.9, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 100 QGDFNNWN----REEFAYKKLDFGKWELVLPPN 128
+G F +W REEF + +D G W V PN
Sbjct: 236 EGAFKDWGYQLAREEFGGELIDGGPWLKVKNPN 268
>pdb|1HJ6|A Chain A, Isocitrate Dehydrogenase S113e Mutant Complexed With
Isopropylmalate, Nadp+ And Magnesium (Flash-Cooled)
pdb|7ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
pdb|8ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
Length = 416
Score = 26.2 bits (56), Expect = 5.9, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 100 QGDFNNWN----REEFAYKKLDFGKWELVLPPN 128
+G F +W REEF + +D G W V PN
Sbjct: 238 EGAFKDWGYQLAREEFGGELIDGGPWLKVKNPN 270
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.454
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,759,535
Number of Sequences: 62578
Number of extensions: 195265
Number of successful extensions: 431
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 420
Number of HSP's gapped (non-prelim): 36
length of query: 132
length of database: 14,973,337
effective HSP length: 88
effective length of query: 44
effective length of database: 9,466,473
effective search space: 416524812
effective search space used: 416524812
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)