Query psy9007
Match_columns 132
No_of_seqs 188 out of 1124
Neff 5.2
Searched_HMMs 46136
Date Sat Aug 17 01:24:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9007.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9007hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03244 alpha-amylase; Provis 99.9 7.9E-23 1.7E-27 186.8 4.2 85 8-94 344-428 (872)
2 KOG0470|consensus 99.7 2.2E-18 4.7E-23 156.1 2.4 105 9-114 172-284 (757)
3 PLN02447 1,4-alpha-glucan-bran 99.6 1.3E-16 2.9E-21 145.9 0.5 100 8-107 170-270 (758)
4 cd02854 Glycogen_branching_enz 99.3 2.3E-12 5E-17 91.5 6.1 47 82-129 5-51 (99)
5 PLN02960 alpha-amylase 99.2 1.9E-12 4E-17 120.3 1.5 96 10-107 341-436 (897)
6 PRK12568 glycogen branching en 99.1 1.8E-10 3.8E-15 105.7 6.7 66 65-132 119-187 (730)
7 PLN02447 1,4-alpha-glucan-bran 99.0 2.6E-10 5.7E-15 104.9 5.9 55 67-127 104-158 (758)
8 PRK14705 glycogen branching en 99.0 9.9E-10 2.2E-14 105.2 7.1 67 65-132 615-688 (1224)
9 PF02922 CBM_48: Carbohydrate- 98.9 3.1E-09 6.8E-14 71.3 5.5 49 82-131 11-62 (85)
10 PRK14706 glycogen branching en 98.8 4.1E-09 9E-14 95.4 6.0 66 65-132 22-87 (639)
11 COG0296 GlgB 1,4-alpha-glucan 98.8 7E-09 1.5E-13 93.9 6.1 65 65-132 18-86 (628)
12 PRK05402 glycogen branching en 98.7 2.3E-08 4.9E-13 91.3 5.8 59 65-132 16-75 (726)
13 PRK05402 glycogen branching en 98.7 3.5E-08 7.5E-13 90.1 6.7 65 66-132 116-181 (726)
14 cd02858 Esterase_N_term Estera 98.6 7.9E-08 1.7E-12 65.9 5.6 46 83-131 7-52 (85)
15 PRK14706 glycogen branching en 98.6 6.7E-09 1.4E-13 94.0 0.1 91 9-107 89-187 (639)
16 PRK12313 glycogen branching en 98.6 9.1E-08 2E-12 86.0 5.6 66 65-132 22-87 (633)
17 TIGR01515 branching_enzym alph 98.5 1.6E-07 3.4E-12 84.4 6.4 66 65-132 12-78 (613)
18 cd02855 Glycogen_branching_enz 98.5 4E-07 8.6E-12 62.9 6.5 62 66-131 6-70 (106)
19 PLN02960 alpha-amylase 98.4 3.7E-07 8.1E-12 85.5 5.0 45 83-128 129-178 (897)
20 PRK12313 glycogen branching en 98.4 5.5E-08 1.2E-12 87.4 -1.0 90 11-107 91-190 (633)
21 cd02861 E_set_proteins_like E 98.4 8.5E-07 1.8E-11 60.0 5.1 44 84-131 4-47 (82)
22 cd02860 Pullulanase_N_term Pul 98.2 3.2E-06 7E-11 58.9 5.9 48 83-132 9-60 (100)
23 cd02856 Glycogen_debranching_e 98.2 3.8E-06 8.2E-11 59.0 5.6 48 83-132 10-58 (103)
24 COG0296 GlgB 1,4-alpha-glucan 98.2 2.8E-07 6.2E-12 83.6 -0.3 98 9-114 88-193 (628)
25 cd02853 MTHase_N_term Maltooli 98.1 5.7E-06 1.2E-10 56.2 5.6 44 83-132 9-52 (85)
26 PRK14705 glycogen branching en 98.1 5.4E-07 1.2E-11 86.8 0.2 93 10-113 691-793 (1224)
27 cd02854 Glycogen_branching_enz 98.0 9.2E-06 2E-10 57.6 4.4 39 7-46 61-99 (99)
28 PRK12568 glycogen branching en 97.9 1.6E-06 3.5E-11 80.0 -1.0 89 12-107 192-289 (730)
29 TIGR01515 branching_enzym alph 97.9 2.3E-06 5E-11 77.0 -0.7 88 10-107 81-176 (613)
30 PLN03244 alpha-amylase; Provis 97.9 1.3E-05 2.9E-10 74.8 4.0 45 83-128 132-181 (872)
31 cd02688 E_set E or "early" set 97.8 4.6E-05 1E-09 49.4 5.5 45 83-129 5-49 (83)
32 cd02852 Isoamylase_N_term Isoa 97.8 3.9E-05 8.5E-10 54.9 5.5 48 83-132 8-62 (119)
33 KOG0470|consensus 97.8 1.8E-05 3.8E-10 73.0 4.0 52 79-132 111-163 (757)
34 TIGR02104 pulA_typeI pullulana 97.8 1.2E-05 2.6E-10 72.1 2.6 86 17-107 80-183 (605)
35 TIGR02104 pulA_typeI pullulana 97.7 5.8E-05 1.3E-09 67.8 5.8 48 83-132 20-71 (605)
36 TIGR02103 pullul_strch alpha-1 97.5 0.00022 4.8E-09 67.4 6.0 49 83-132 136-186 (898)
37 PRK03705 glycogen debranching 97.3 0.00059 1.3E-08 62.4 6.3 49 83-132 20-68 (658)
38 TIGR02402 trehalose_TreZ malto 97.1 9.1E-05 2E-09 66.0 -1.2 77 20-107 52-130 (542)
39 TIGR02102 pullulan_Gpos pullul 96.9 0.0015 3.3E-08 63.1 5.7 45 84-129 329-376 (1111)
40 cd02859 AMPKbeta_GBD_like AMP- 96.6 0.0039 8.5E-08 42.1 4.5 43 84-131 4-46 (79)
41 PRK03705 glycogen debranching 96.6 0.00054 1.2E-08 62.7 0.2 83 21-107 90-198 (658)
42 TIGR02100 glgX_debranch glycog 96.3 0.0088 1.9E-07 55.1 6.2 48 83-132 15-65 (688)
43 TIGR02100 glgX_debranch glycog 96.1 0.0014 3E-08 60.3 -0.4 84 20-107 86-203 (688)
44 PLN02877 alpha-amylase/limit d 96.0 0.013 2.9E-07 56.0 5.8 59 70-131 211-272 (970)
45 TIGR02102 pullulan_Gpos pullul 95.9 0.0021 4.6E-08 62.1 -0.1 91 16-107 393-499 (1111)
46 TIGR02103 pullul_strch alpha-1 95.3 0.0098 2.1E-07 56.5 2.1 83 19-107 203-305 (898)
47 PRK14510 putative bifunctional 94.2 0.081 1.8E-06 51.8 5.4 49 82-132 23-74 (1221)
48 PLN02877 alpha-amylase/limit d 89.0 0.17 3.6E-06 48.8 0.9 83 20-107 291-392 (970)
49 PRK14510 putative bifunctional 86.0 0.25 5.4E-06 48.5 0.2 87 21-107 96-206 (1221)
50 COG1523 PulA Type II secretory 79.3 0.94 2E-05 42.3 1.2 54 54-107 157-219 (697)
51 cd05814 CBM20_Prei4 Prei4, N-t 54.1 19 0.00042 25.6 3.5 42 84-125 3-52 (120)
52 cd05816 CBM20_DPE2_repeat2 Dis 46.6 38 0.00082 23.2 3.9 43 84-126 2-50 (99)
53 PF00686 CBM_20: Starch bindin 44.4 43 0.00094 22.6 3.9 41 84-125 4-54 (96)
54 cd05808 CBM20_alpha_amylase Al 42.9 22 0.00048 23.7 2.2 31 96-126 16-50 (95)
55 TIGR02402 trehalose_TreZ malto 38.0 24 0.00051 31.8 2.2 19 84-103 1-19 (542)
56 COG1523 PulA Type II secretory 34.7 67 0.0014 30.3 4.6 49 83-132 31-82 (697)
57 PF13754 Big_3_4: Bacterial Ig 32.9 56 0.0012 20.2 2.7 18 115-132 8-25 (54)
58 PF13143 DUF3986: Protein of u 27.3 67 0.0015 22.7 2.6 36 96-131 7-43 (88)
59 PF05166 YcgL: YcgL domain; I 21.5 33 0.00071 23.5 0.1 16 1-26 12-27 (74)
No 1
>PLN03244 alpha-amylase; Provisional
Probab=99.86 E-value=7.9e-23 Score=186.84 Aligned_cols=85 Identities=38% Similarity=0.625 Sum_probs=77.7
Q ss_pred heeeEEEecCCcceeecCccceEEecCCCCCCceeeEEeCCCCCCCccccCCCCCCCchHHHhhcccceEecCCceEEEe
Q psy9007 8 YITRTLIFRYLLPISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICTQEQKCASYE 87 (132)
Q Consensus 8 ~~~~~~~~~~~~~~dRip~w~~~v~q~~~~~~~f~~~~w~P~~~~~Y~f~~~~p~~p~~~~IYEaHvg~~~~~~~v~tF~ 87 (132)
.+|-.|...+|+ +|||||||+||+|+++ +..|+|+||+|+.+++|+|+|++|++|.+++||||||||++++++++||+
T Consensus 344 ~~k~~~~~~~g~-~~RiPaw~~~~~~~~~-~~~~~~~~w~P~~~~~y~~k~~~p~~p~~lrIYE~HvGms~~e~kv~ty~ 421 (872)
T PLN03244 344 KYRLYFNTPDGP-LERIPAWATYVLPDDD-GKQAFAIHWEPPPEAAHKWKNMKPKVPESLRIYECHVGISGSEPKISSFE 421 (872)
T ss_pred eEEEEEEcCCCC-cccCCCCeeeEEecCC-CCceeeeEeCCCcccCCccCCCCCCCCCCceEEEEEeeecCCCCCcccHH
Confidence 466666666677 9999999999999987 78999999999988899999999999999999999999999999999999
Q ss_pred eeccccc
Q psy9007 88 DFVRVVI 94 (132)
Q Consensus 88 ~wApnal 94 (132)
+|+.++.
T Consensus 422 eF~~~vt 428 (872)
T PLN03244 422 EFTEKVT 428 (872)
T ss_pred HHhhccC
Confidence 9999855
No 2
>KOG0470|consensus
Probab=99.71 E-value=2.2e-18 Score=156.10 Aligned_cols=105 Identities=34% Similarity=0.542 Sum_probs=93.8
Q ss_pred eeeEEEecCCcceeecCccceEEecCCCCCCceeeEEeCCCCCCCccccCCCCCCCc-hHHHhhccc-ceEecCCceEE-
Q psy9007 9 ITRTLIFRYLLPISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPE-NLKIYESHV-GICTQEQKCAS- 85 (132)
Q Consensus 9 ~~~~~~~~~~~~~dRip~w~~~v~q~~~~~~~f~~~~w~P~~~~~Y~f~~~~p~~p~-~~~IYEaHv-g~~~~~~~v~t- 85 (132)
++-.+...+|+.++|+||||++++|+.. ..+|.+.+|+|+++.+|.|++++|+.|+ .|+|||+|| |+++.++++.+
T Consensus 172 ~~~~~~~p~g~~~~~~~~~~~~~~~~~~-~~q~~~~~~~~~~e~~w~~~~~~p~~P~~sL~IYE~HVrgfS~~E~~v~~~ 250 (757)
T KOG0470|consen 172 SKIHLSTPYGETCKRIPAWATYVDQEGE-GPQYYGIYWDPSPEFDWGFKHSRPKIPESSLRIYELHVRGFSSHESKVNTR 250 (757)
T ss_pred eEEEeecCCcceeeccChHhhcccCCCc-ccceeeccCCCCCcccccccCCCCCCChhheEEEEEeeccccCCCCccccc
Confidence 4445667789999999999999999876 8999999999998899999999999997 999999999 99988888777
Q ss_pred --EeeecccccceeEEeccccccc--cccc-cee
Q psy9007 86 --YEDFVRVVIPRIVKQGDFNNWN--REEF-AYK 114 (132)
Q Consensus 86 --F~~wApnalP~V~~lG~nn~W~--~~~~-~m~ 114 (132)
|+.||.++||+|+.+|||+++. ..|| .|+
T Consensus 251 ~gY~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~ 284 (757)
T KOG0470|consen 251 GGYLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYY 284 (757)
T ss_pred cchhhhhhhhhhHHHHhCccceEEeehhhhhhhh
Confidence 9999999999999999999997 4666 454
No 3
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=99.60 E-value=1.3e-16 Score=145.87 Aligned_cols=100 Identities=28% Similarity=0.534 Sum_probs=88.0
Q ss_pred heeeEEEecCCcceeecCccceEEecCCCC-CCceeeEEeCCCCCCCccccCCCCCCCchHHHhhcccceEecCCceEEE
Q psy9007 8 YITRTLIFRYLLPISRLSPWATYVTEPPVV-GHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICTQEQKCASY 86 (132)
Q Consensus 8 ~~~~~~~~~~~~~~dRip~w~~~v~q~~~~-~~~f~~~~w~P~~~~~Y~f~~~~p~~p~~~~IYEaHvg~~~~~~~v~tF 86 (132)
..|=.|...+|+.++|+||||+++++++.+ +.+|++++|+|+.+++|.|++++|++|..+.|||+|+|+++++++.++|
T Consensus 170 ~Yky~i~~~~g~~~~r~dpya~~~~~~p~~~~~~~~svv~dp~~~~~y~w~~~~~~~~~~~~IYE~Hvg~~~~~~~~gty 249 (758)
T PLN02447 170 RVKIRMETPDGRWVDRIPAWIKYAVQAPGEIGAPYNGVYWDPPEEEKYVFKHPRPPRPAALRIYEAHVGMSSEEPKVNSY 249 (758)
T ss_pred EEEEEEEeCCCcEEeecCchHheeeccCCccCCCCceEEeCCCCCCCCCCCCCCCCCCCCCEEEEEeCCcccCCCCCCCH
Confidence 556666667788999999999999998752 2479999999986678999999998888999999999998877777899
Q ss_pred eeecccccceeEEeccccccc
Q psy9007 87 EDFVRVVIPRIVKQGDFNNWN 107 (132)
Q Consensus 87 ~~wApnalP~V~~lG~nn~W~ 107 (132)
++++...||+|+.+|++++|.
T Consensus 250 ~~~~~~~L~ylk~LG~t~I~L 270 (758)
T PLN02447 250 REFADDVLPRIKALGYNAVQL 270 (758)
T ss_pred HHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999999999997
No 4
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=99.34 E-value=2.3e-12 Score=91.53 Aligned_cols=47 Identities=36% Similarity=0.800 Sum_probs=43.1
Q ss_pred ceEEEeeecccccceeEEecccccccccccceeeCCCCeEEEEcCCCC
Q psy9007 82 KCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNP 129 (132)
Q Consensus 82 ~v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~~~~G~We~~ip~~~ 129 (132)
++.+|++|||+|. +|.++|+||+|+..+++|.+.++|+|+++||+..
T Consensus 5 ~g~~FrvwAP~A~-~V~l~GdFn~W~~~~~~m~k~~~G~W~~~i~~~~ 51 (99)
T cd02854 5 GGVTYREWAPNAE-EVYLIGDFNNWDRNAHPLKKDEFGVWEITIPPNE 51 (99)
T ss_pred CeEEEEEECCCCC-EEEEEccCCCCCCcCcccEECCCCEEEEEECCcc
Confidence 3589999999999 9999999999998889999988899999999854
No 5
>PLN02960 alpha-amylase
Probab=99.24 E-value=1.9e-12 Score=120.25 Aligned_cols=96 Identities=34% Similarity=0.633 Sum_probs=81.5
Q ss_pred eeEEEecCCcceeecCccceEEecCCCCCCceeeEEeCCCCCCCccccCCCCCCCchHHHhhcccceEecCCceEEEeee
Q psy9007 10 TRTLIFRYLLPISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICTQEQKCASYEDF 89 (132)
Q Consensus 10 ~~~~~~~~~~~~dRip~w~~~v~q~~~~~~~f~~~~w~P~~~~~Y~f~~~~p~~p~~~~IYEaHvg~~~~~~~v~tF~~w 89 (132)
+-.|... ++.++|+||||+++.++++ +..+.+++|+|+...+|.|++.+|..+..+.|||+|+|+++.+++.++|+.+
T Consensus 341 ky~v~~~-~g~~~~vdpyA~~~qp~~~-~~~~~~v~~d~~~~~~y~W~~~~p~~~~~~vIYElHvg~~~~e~~~gtf~~~ 418 (897)
T PLN02960 341 RVYFNTP-DGPLERVPAWATYVLPDPD-GKQWYAIHWEPPPEEAYKWKFERPKVPKSLRIYECHVGISGSEPKISSFKEF 418 (897)
T ss_pred EEEEEeC-CCceEECCCcceeEeecCC-CccceEEEeCCCCCCCCCCCCCCCCCCCCcEEEEEecccccCCCCCCCHHHH
Confidence 3344443 4568999999999988776 6678999999874468999999887778899999999988877777899999
Q ss_pred cccccceeEEeccccccc
Q psy9007 90 VRVVIPRIVKQGDFNNWN 107 (132)
Q Consensus 90 ApnalP~V~~lG~nn~W~ 107 (132)
+...||+|+.+|++++|.
T Consensus 419 ~e~~LdYLk~LGvt~IeL 436 (897)
T PLN02960 419 TQKVLPHVKKAGYNAIQL 436 (897)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 999999999999999997
No 6
>PRK12568 glycogen branching enzyme; Provisional
Probab=99.08 E-value=1.8e-10 Score=105.68 Aligned_cols=66 Identities=20% Similarity=0.361 Sum_probs=55.5
Q ss_pred chHHHhh---cccceEecCCceEEEeeecccccceeEEecccccccccccceeeCCCCeEEEEcCCCCCCC
Q psy9007 65 ENLKIYE---SHVGICTQEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGS 132 (132)
Q Consensus 65 ~~~~IYE---aHvg~~~~~~~v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~~~~G~We~~ip~~~~G~ 132 (132)
++.++|+ ||+....+.. +++|++|||+|. +|+++|+||.|+...++|.+.++|+|++|||+...|+
T Consensus 119 ~~~~~y~~lGah~~~~~g~~-Gv~FaVWAPnA~-~VsVvGDFN~Wdg~~~pM~~~~~GVWelfipg~~~G~ 187 (730)
T PRK12568 119 DGQALRRALGAQHVQVGEVP-GVRFAVWAPHAQ-RVAVVGDFNGWDVRRHPMRQRIGGFWELFLPRVEAGA 187 (730)
T ss_pred chhhhHHhcCCeEeeECCCC-cEEEEEECCCCC-EEEEEEecCCCCccceecccCCCCEEEEEECCCCCCC
Confidence 5566777 8975444333 489999999999 9999999999998889998777899999999998874
No 7
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=99.04 E-value=2.6e-10 Score=104.89 Aligned_cols=55 Identities=27% Similarity=0.541 Sum_probs=47.0
Q ss_pred HHHhhcccceEecCCceEEEeeecccccceeEEecccccccccccceeeCCCCeEEEEcCC
Q psy9007 67 LKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPP 127 (132)
Q Consensus 67 ~~IYEaHvg~~~~~~~v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~~~~G~We~~ip~ 127 (132)
++.++||.. . ++++|++|||+|. +|.++|+||+|+..+++|++.++|+|+++||+
T Consensus 104 y~~lGa~~~---~--~g~~FrvWAP~A~-~V~LvGdFN~W~~~~~~M~~~~~GvWe~~ip~ 158 (758)
T PLN02447 104 YEKFGFNRS---E--GGITYREWAPGAK-AAALIGDFNNWNPNAHWMTKNEFGVWEIFLPD 158 (758)
T ss_pred HHhceeEEe---c--CCEEEEEECCCCC-EEEEEEecCCCCCCccCceeCCCCEEEEEECC
Confidence 444446752 1 3489999999999 99999999999988899999888999999998
No 8
>PRK14705 glycogen branching enzyme; Provisional
Probab=98.97 E-value=9.9e-10 Score=105.24 Aligned_cols=67 Identities=24% Similarity=0.491 Sum_probs=54.5
Q ss_pred chHHHhh---cccceEe---cCCceEEEeeecccccceeEEecccccccccccceee-CCCCeEEEEcCCCCCCC
Q psy9007 65 ENLKIYE---SHVGICT---QEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKK-LDFGKWELVLPPNPDGS 132 (132)
Q Consensus 65 ~~~~IYE---aHvg~~~---~~~~v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~-~~~G~We~~ip~~~~G~ 132 (132)
+++++|+ ||+.... +...+++|++|||||. +|+++|+||+|+...++|.+ .++|+|++|||+...|.
T Consensus 615 ~~~~~y~~lGah~~~~~~~~~~~~Gv~F~VWAP~A~-~V~vvgdFN~w~~~~~~m~~~~~~GvW~~fipg~~~G~ 688 (1224)
T PRK14705 615 RHEKLWDVLGAHVQHYKSSLGDVDGVSFAVWAPNAQ-AVRVKGDFNGWDGREHSMRSLGSSGVWELFIPGVVAGA 688 (1224)
T ss_pred chhhHHHhcCCeEeeccCccCCCCeEEEEEECCCCC-EEEEEEEecCCCCCcccceECCCCCEEEEEECCCCCCC
Confidence 5666776 8975432 1122589999999999 99999999999988899987 56799999999998874
No 9
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=98.90 E-value=3.1e-09 Score=71.26 Aligned_cols=49 Identities=27% Similarity=0.473 Sum_probs=42.3
Q ss_pred ceEEEeeecccccceeEEeccccc-cccccccee-eCCCCeEEEEcC-CCCCC
Q psy9007 82 KCASYEDFVRVVIPRIVKQGDFNN-WNREEFAYK-KLDFGKWELVLP-PNPDG 131 (132)
Q Consensus 82 ~v~tF~~wApnalP~V~~lG~nn~-W~~~~~~m~-~~~~G~We~~ip-~~~~G 131 (132)
+..+|++|||+|. +|.++++++. |...+++|. +.+.|+|+++++ ..+.|
T Consensus 11 ~~~~F~vwaP~A~-~V~l~~~~~~~~~~~~~~m~~~~~~G~w~~~~~~~~~~g 62 (85)
T PF02922_consen 11 GGVTFRVWAPNAK-SVELVLYFNGSWPAEEYPMTRKDDDGVWEVTVPGDLPPG 62 (85)
T ss_dssp TEEEEEEE-TTES-EEEEEEETTTSSEEEEEEEEEECTTTEEEEEEEGCGTTT
T ss_pred CEEEEEEECCCCC-EEEEEEEeeecCCCceEEeeecCCCCEEEEEEcCCcCCC
Confidence 4699999999999 9999999999 888889999 588899999999 55544
No 10
>PRK14706 glycogen branching enzyme; Provisional
Probab=98.85 E-value=4.1e-09 Score=95.36 Aligned_cols=66 Identities=21% Similarity=0.423 Sum_probs=53.1
Q ss_pred chHHHhhcccceEecCCceEEEeeecccccceeEEecccccccccccceeeCCCCeEEEEcCCCCCCC
Q psy9007 65 ENLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGS 132 (132)
Q Consensus 65 ~~~~IYEaHvg~~~~~~~v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~~~~G~We~~ip~~~~G~ 132 (132)
+.+++..||+....... +++|++|||+|. +|.++|+||.|+..+++|.+.++|+|+++||+...|+
T Consensus 22 ~~~~~lGah~~~~~~~~-Gv~FrvwAP~A~-~V~Lvgdfn~w~~~~~pM~~~~~GvW~~~vpg~~~g~ 87 (639)
T PRK14706 22 RPDHLLGAHPATEGGVE-GVRFAVWAPGAQ-HVSVVGDFNDWNGFDHPMQRLDFGFWGAFVPGARPGQ 87 (639)
T ss_pred chhHhcCccCccCCCcc-cEEEEEECCCCC-EEEEEEecCCcccccccccccCCCEEEEEECCCCCCC
Confidence 34556668873222212 489999999999 9999999999998889999877899999999988774
No 11
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=98.81 E-value=7e-09 Score=93.94 Aligned_cols=65 Identities=26% Similarity=0.563 Sum_probs=52.7
Q ss_pred chHHHhh---cccceEecCCceEEEeeecccccceeEEecccccccccccceee-CCCCeEEEEcCCCCCCC
Q psy9007 65 ENLKIYE---SHVGICTQEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKK-LDFGKWELVLPPNPDGS 132 (132)
Q Consensus 65 ~~~~IYE---aHvg~~~~~~~v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~-~~~G~We~~ip~~~~G~ 132 (132)
.+.++|+ ||..-. +. ++.+|++|||||. +|+++|+||+|+...++|.. .++|+|++|||++..|+
T Consensus 18 ~~~~~~~~~GA~~~~~-g~-~~~~F~vWAP~a~-~V~vvgdfn~w~~~~~~~~~~~~~G~we~~vp~~~~G~ 86 (628)
T COG0296 18 THLRLYEKLGAHPIEN-GV-SGVRFRVWAPNAR-RVSLVGDFNDWDGRRMPMRDRKESGIWELFVPGAPPGT 86 (628)
T ss_pred cchhhHhhhCcccccC-CC-CceEEEEECCCCC-eEEEEeecCCccceecccccCCCCceEEEeccCCCCCC
Confidence 4455555 887533 22 2499999999999 99999999999988888875 57799999999988884
No 12
>PRK05402 glycogen branching enzyme; Provisional
Probab=98.69 E-value=2.3e-08 Score=91.31 Aligned_cols=59 Identities=10% Similarity=-0.010 Sum_probs=49.1
Q ss_pred chHHHhhcccceEecCCceEEEeeecccccceeEEecccccccccccceee-CCCCeEEEEcCCCCCCC
Q psy9007 65 ENLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKK-LDFGKWELVLPPNPDGS 132 (132)
Q Consensus 65 ~~~~IYEaHvg~~~~~~~v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~-~~~G~We~~ip~~~~G~ 132 (132)
+.+++..||+.. . +.+|++|||||. +|.++|+||. +..++|.+ .++|+|++||| +++|+
T Consensus 16 ~~~~~lGah~~~---~--g~~f~vwaP~A~-~V~vvgdfn~--~~~~~m~~~~~~G~w~~~ip-~~~g~ 75 (726)
T PRK05402 16 DPFSVLGPHPTG---A--GLVVRALLPGAE-EVWVILPGGG--RKLAELERLHPRGLFAGVLP-RKGPF 75 (726)
T ss_pred CHHHhcCCCCCC---C--cEEEEEECCCCe-EEEEEeecCC--CccccceEcCCCceEEEEec-CCCCC
Confidence 566777799741 1 489999999999 9999999994 66889997 46799999999 88874
No 13
>PRK05402 glycogen branching enzyme; Provisional
Probab=98.68 E-value=3.5e-08 Score=90.11 Aligned_cols=65 Identities=20% Similarity=0.386 Sum_probs=51.3
Q ss_pred hHHHhhcccceEecCCceEEEeeecccccceeEEecccccccccccceeeC-CCCeEEEEcCCCCCCC
Q psy9007 66 NLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKL-DFGKWELVLPPNPDGS 132 (132)
Q Consensus 66 ~~~IYEaHvg~~~~~~~v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~~-~~G~We~~ip~~~~G~ 132 (132)
.++.+.||+....... +++|++|||+|. +|.++|+||.|+...++|.+. +.|+|+++||+...|.
T Consensus 116 ~~~~LGah~~~~~~~~-gv~FrvwAP~A~-~V~l~gdfn~w~~~~~~m~~~~~~Gvw~~~i~~~~~g~ 181 (726)
T PRK05402 116 LYETLGAHPVTVDGVS-GVRFAVWAPNAR-RVSVVGDFNGWDGRRHPMRLRGESGVWELFIPGLGEGE 181 (726)
T ss_pred hhhccccEEeccCCCC-cEEEEEECCCCC-EEEEEEEcCCCCCccccceEcCCCCEEEEEeCCCCCCC
Confidence 4455557763211123 489999999999 999999999999878899986 7799999999987763
No 14
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.62 E-value=7.9e-08 Score=65.93 Aligned_cols=46 Identities=15% Similarity=0.316 Sum_probs=39.2
Q ss_pred eEEEeeecccccceeEEecccccccccccceeeCCCCeEEEEcCCCCCC
Q psy9007 83 CASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDG 131 (132)
Q Consensus 83 v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~~~~G~We~~ip~~~~G 131 (132)
..+|++|||.|. +|.++|+++.|. .++|.+.+.|.|++.+++...|
T Consensus 7 ~v~F~vwAP~A~-~V~L~~~~~~~~--~~~m~~~~~G~W~~~v~~l~~g 52 (85)
T cd02858 7 TVTFRLFAPKAN-EVQVRGSWGGAG--SHPMTKDEAGVWSVTTGPLAPG 52 (85)
T ss_pred cEEEEEECCCCC-EEEEEeecCCCc--cEeCeECCCeEEEEEECCCCCc
Confidence 489999999998 999999998654 6899988889999999765544
No 15
>PRK14706 glycogen branching enzyme; Provisional
Probab=98.62 E-value=6.7e-09 Score=94.02 Aligned_cols=91 Identities=15% Similarity=0.273 Sum_probs=71.2
Q ss_pred eeeEEEecCCcceeecCccceEEecCCCCCCceeeEEeCCCCCCCccccCCCCC------CCchHHHhhcccceEecCC-
Q psy9007 9 ITRTLIFRYLLPISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPK------KPENLKIYESHVGICTQEQ- 81 (132)
Q Consensus 9 ~~~~~~~~~~~~~dRip~w~~~v~q~~~~~~~f~~~~w~P~~~~~Y~f~~~~p~------~p~~~~IYEaHvg~~~~~~- 81 (132)
.+=+|....|..+++++|||+++.+++. + .+++|+++ |+|++..+. .++.+.|||+|+|+++.+.
T Consensus 89 Yky~I~~~~g~~~~~~DPYa~~~~~~~~-~---~svv~~~~----~~w~d~~w~~~~~~~~~~~~~IYE~Hvg~f~~~~~ 160 (639)
T PRK14706 89 YKFRVTGAAGQTVDKMDPYGSFFEVRPN-T---ASIIWEDR----FEWTDTRWMSSRTAGFDQPISIYEVHVGSWARRDD 160 (639)
T ss_pred EEEEEECCCCCEEeccCcceEEEecCCC-C---ceEECCCC----CCCCCcccccccCCccCCCcEEEEEehhhcccCCC
Confidence 3444444457789999999999999765 3 68999876 999877542 2346899999999886433
Q ss_pred -ceEEEeeecccccceeEEeccccccc
Q psy9007 82 -KCASYEDFVRVVIPRIVKQGDFNNWN 107 (132)
Q Consensus 82 -~v~tF~~wApnalP~V~~lG~nn~W~ 107 (132)
+..+|++.+..++|+|+.+|++++|.
T Consensus 161 g~~~ty~~~~~~l~~ylk~lG~t~vel 187 (639)
T PRK14706 161 GWFLNYRELAHRLGEYVTYMGYTHVEL 187 (639)
T ss_pred CCccCHHHHHHHHHHHHHHcCCCEEEc
Confidence 23689999999778999999999997
No 16
>PRK12313 glycogen branching enzyme; Provisional
Probab=98.56 E-value=9.1e-08 Score=85.98 Aligned_cols=66 Identities=18% Similarity=0.386 Sum_probs=52.9
Q ss_pred chHHHhhcccceEecCCceEEEeeecccccceeEEecccccccccccceeeCCCCeEEEEcCCCCCCC
Q psy9007 65 ENLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGS 132 (132)
Q Consensus 65 ~~~~IYEaHvg~~~~~~~v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~~~~G~We~~ip~~~~G~ 132 (132)
+.++.+.||...... .++++|++|||+|. +|.++|+||+|+...++|.+.+.|+|++++|+...|+
T Consensus 22 ~~~~~lGah~~~~~~-~~gv~Frv~AP~A~-~V~v~gdfn~w~~~~~~m~~~~~Gvw~~~i~~~~~g~ 87 (633)
T PRK12313 22 RLYEYLGAHLEEVDG-EKGTYFRVWAPNAQ-AVSVVGDFNDWRGNAHPLVRRESGVWEGFIPGAKEGQ 87 (633)
T ss_pred cchhcCCcEEeccCC-cccEEEEEECCCCC-EEEEEEecCCCCcccccccccCCCEEEEEeCCCCCCC
Confidence 446667788732211 22489999999999 9999999999998889998877899999999877663
No 17
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=98.53 E-value=1.6e-07 Score=84.39 Aligned_cols=66 Identities=23% Similarity=0.422 Sum_probs=53.0
Q ss_pred chHHHhhcccceEecCCceEEEeeecccccceeEEecccccccccccceeeC-CCCeEEEEcCCCCCCC
Q psy9007 65 ENLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKL-DFGKWELVLPPNPDGS 132 (132)
Q Consensus 65 ~~~~IYEaHvg~~~~~~~v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~~-~~G~We~~ip~~~~G~ 132 (132)
+.+.++.||.... ....+++|++|||+|. +|.++|+||.|+..+++|.+. +.|+|+++||+...|.
T Consensus 12 ~~~~~LGah~~~~-~~~~g~~FrvwAP~A~-~V~L~~dfn~w~~~~~~m~~~~~~Gvw~~~i~~~~~g~ 78 (613)
T TIGR01515 12 RSYELLGSHYMEL-DGVSGTRFCVWAPNAR-EVRVAGDFNYWDGREHPMRRRNDNGIWELFIPGIGEGE 78 (613)
T ss_pred ChHHhcCceEecc-CCcCcEEEEEECCCCC-EEEEEEecCCCCCceecceEecCCCEEEEEeCCCCCCC
Confidence 5677788997321 1113589999999999 999999999999888899875 4799999999987764
No 18
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=98.50 E-value=4e-07 Score=62.92 Aligned_cols=62 Identities=21% Similarity=0.428 Sum_probs=47.5
Q ss_pred hHHHhhcccceEecC--CceEEEeeecccccceeEEecccccccccccceeeCC-CCeEEEEcCCCCCC
Q psy9007 66 NLKIYESHVGICTQE--QKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLD-FGKWELVLPPNPDG 131 (132)
Q Consensus 66 ~~~IYEaHvg~~~~~--~~v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~~~-~G~We~~ip~~~~G 131 (132)
.+..+++|.. +. .++.+|++|+|+|. +|.++++++.|+...++|.+.+ .|+|++++|+...|
T Consensus 6 p~~~lG~~~~---~~~~~~~~~frv~aP~A~-~V~l~~~~~~~~~~~~~m~~~~~~G~w~~~v~~~~~~ 70 (106)
T cd02855 6 LYEKLGAHPT---EVDGVSGVRFAVWAPNAR-RVSVVGDFNGWDGRRHPMRRRGDSGVWELFIPGLGEG 70 (106)
T ss_pred HHHhcCCEEc---ccCCcCCEEEEEECCCCC-EEEEEEECCCCCCcceecEECCCCCEEEEEECCCCCC
Confidence 3456677752 21 02489999999999 9999999999976667998855 79999999876544
No 19
>PLN02960 alpha-amylase
Probab=98.38 E-value=3.7e-07 Score=85.47 Aligned_cols=45 Identities=27% Similarity=0.496 Sum_probs=41.3
Q ss_pred eEEEeeecccccceeEEeccccccccccccee-----eCCCCeEEEEcCCC
Q psy9007 83 CASYEDFVRVVIPRIVKQGDFNNWNREEFAYK-----KLDFGKWELVLPPN 128 (132)
Q Consensus 83 v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~-----~~~~G~We~~ip~~ 128 (132)
.+.|+||||.|. .++++|+||+|++.+++|+ ++++|.|+|++++.
T Consensus 129 ~~~~~~wap~a~-~~~~~gdfn~w~~~~~~~~~g~~~~~~~~~~~~~~~~~ 178 (897)
T PLN02960 129 RVDFMEWAPGAR-YCSLVGDFNNWSPTENRAREGYFGHDDFGYWFIILEDK 178 (897)
T ss_pred CeEEEEEcCCce-eEEEeecccCCCcccchhhcccccccccceEEEEechh
Confidence 489999999999 9999999999999999987 67889999999864
No 20
>PRK12313 glycogen branching enzyme; Provisional
Probab=98.36 E-value=5.5e-08 Score=87.38 Aligned_cols=90 Identities=19% Similarity=0.328 Sum_probs=70.9
Q ss_pred eEEEecCCcceeecCccceEEecCCCCCCceeeEEeCCCCCCCccccCCCCC--------CCchHHHhhcccceEecC--
Q psy9007 11 RTLIFRYLLPISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPK--------KPENLKIYESHVGICTQE-- 80 (132)
Q Consensus 11 ~~~~~~~~~~~dRip~w~~~v~q~~~~~~~f~~~~w~P~~~~~Y~f~~~~p~--------~p~~~~IYEaHvg~~~~~-- 80 (132)
=+|...+++++++.+||++.+.+.+. + .+++++|+ +|.|++.... ..+.+.|||+|++..+.+
T Consensus 91 y~v~~~~g~~~~~~DPya~~~~~~~~-~---~s~v~d~~---~~~w~~~~~~~~~~~~~~~~~~~~iYe~hv~~f~~~~~ 163 (633)
T PRK12313 91 YHISRQDGYQVEKIDPFAFYFEARPG-T---ASIVWDLP---EYKWKDGLWLARRKRWNALDRPISIYEVHLGSWKRNED 163 (633)
T ss_pred EEEECCCCeEEecCCCceEEEecCCC-C---ceEECCCc---ccCCCChhhhhccccCCCCCCCceEEEEehhccccCCC
Confidence 34445567888999999999998654 3 68999986 5999887531 126689999999976543
Q ss_pred CceEEEeeecccccceeEEeccccccc
Q psy9007 81 QKCASYEDFVRVVIPRIVKQGDFNNWN 107 (132)
Q Consensus 81 ~~v~tF~~wApnalP~V~~lG~nn~W~ 107 (132)
++.++|+..+...||+|+.+|++++|.
T Consensus 164 ~~~g~~~~~~~~ll~yl~~LGv~~i~L 190 (633)
T PRK12313 164 GRPLSYRELADELIPYVKEMGYTHVEF 190 (633)
T ss_pred CCccCHHHHHHHHHHHHHHcCCCEEEe
Confidence 445789999999779999999999997
No 21
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.35 E-value=8.5e-07 Score=60.04 Aligned_cols=44 Identities=20% Similarity=0.360 Sum_probs=38.9
Q ss_pred EEEeeecccccceeEEecccccccccccceeeCCCCeEEEEcCCCCCC
Q psy9007 84 ASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDG 131 (132)
Q Consensus 84 ~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~~~~G~We~~ip~~~~G 131 (132)
.+|+.|||++. .|.+.|.||+|+ .++|.+.+.|.|++.++ ...|
T Consensus 4 vtf~~~ap~a~-~V~v~G~fn~W~--~~~m~~~~~G~w~~~~~-l~~G 47 (82)
T cd02861 4 VVFAYRGPEAD-SVYLAGSFNNWN--AIPMEREGDGLWVVTVE-LRPG 47 (82)
T ss_pred EEEEEECCCCC-EEEEEeECCCCC--cccCEECCCCcEEEEEe-CCCC
Confidence 79999999998 999999999998 67999877799999997 4455
No 22
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.23 E-value=3.2e-06 Score=58.88 Aligned_cols=48 Identities=13% Similarity=0.124 Sum_probs=39.4
Q ss_pred eEEEeeecccccceeEEeccccccc----ccccceeeCCCCeEEEEcCCCCCCC
Q psy9007 83 CASYEDFVRVVIPRIVKQGDFNNWN----REEFAYKKLDFGKWELVLPPNPDGS 132 (132)
Q Consensus 83 v~tF~~wApnalP~V~~lG~nn~W~----~~~~~m~~~~~G~We~~ip~~~~G~ 132 (132)
+.+|++|||+|. +|.++.|. .|+ ...++|.+.+.|+|+++|++..+|.
T Consensus 9 ~~~F~vwAP~A~-~V~L~l~~-~~~~~~~~~~~~m~~~~~gvw~~~v~~~~~g~ 60 (100)
T cd02860 9 KTTFRLWAPTAQ-SVKLLLYD-KDDQDKVLETVQMKRGENGVWSVTLDGDLEGY 60 (100)
T ss_pred CEEEEEECCCCc-EEEEEEEc-CCCCCCcceeEeeecCCCCEEEEEeCCccCCc
Confidence 489999999999 99999864 454 2457998877899999999887773
No 23
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.19 E-value=3.8e-06 Score=59.00 Aligned_cols=48 Identities=15% Similarity=0.037 Sum_probs=39.6
Q ss_pred eEEEeeecccccceeEEeccccccc-ccccceeeCCCCeEEEEcCCCCCCC
Q psy9007 83 CASYEDFVRVVIPRIVKQGDFNNWN-REEFAYKKLDFGKWELVLPPNPDGS 132 (132)
Q Consensus 83 v~tF~~wApnalP~V~~lG~nn~W~-~~~~~m~~~~~G~We~~ip~~~~G~ 132 (132)
+.+|++|||+|. +|.++.|++ ++ ...++|.+.+.|+|++.+++...|.
T Consensus 10 g~~F~vwAP~A~-~V~L~l~~~-~~~~~~~~m~~~~~GvW~~~v~~~~~g~ 58 (103)
T cd02856 10 GCNFAVHSENAT-RIELCLFDE-DGSETRLPLTEEYGGVWHGFLPGIKAGQ 58 (103)
T ss_pred CeEEEEECCCCC-EEEEEEEeC-CCCEEEEEcccccCCEEEEEECCCCCCC
Confidence 489999999999 999999764 33 4467898777899999999887774
No 24
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=98.19 E-value=2.8e-07 Score=83.65 Aligned_cols=98 Identities=19% Similarity=0.172 Sum_probs=77.6
Q ss_pred eeeEEEecCCcceeecCccceEEecCCCCCCceeeEEeCCCCCCCccccCC----CCC--CCchHHHhhcccceEecCCc
Q psy9007 9 ITRTLIFRYLLPISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSS----KPK--KPENLKIYESHVGICTQEQK 82 (132)
Q Consensus 9 ~~~~~~~~~~~~~dRip~w~~~v~q~~~~~~~f~~~~w~P~~~~~Y~f~~~----~p~--~p~~~~IYEaHvg~~~~~~~ 82 (132)
.|=.|+.+.|...+..+|++++..+.+. + ..++++++ . |+|+.. +.+ .-+.+.|||+|+|+++.+ +
T Consensus 88 Yky~l~~~~g~~~~~~DP~a~~~~~~p~-~---aS~v~~~~--~-y~W~d~~~~~~~~~~~~e~~vIYElHvGs~~~~-~ 159 (628)
T COG0296 88 YKYELIDPSGQLRLKADPYARRQEVGPH-T---ASQVVDLP--D-YEWQDERWDRAWRGRFWEPIVIYELHVGSFTPD-R 159 (628)
T ss_pred EEEEEeCCCCceeeccCchhhccCCCCC-C---cceecCCC--C-cccccccccccccCCCCCCceEEEEEeeeccCC-C
Confidence 4556777778778888999999888765 4 67999986 2 999944 332 237899999999998875 5
Q ss_pred eEEEeeecccccceeEEeccccccc--cccccee
Q psy9007 83 CASYEDFVRVVIPRIVKQGDFNNWN--REEFAYK 114 (132)
Q Consensus 83 v~tF~~wApnalP~V~~lG~nn~W~--~~~~~m~ 114 (132)
.-+|.+.|...||+++.||+++|+. ..+||..
T Consensus 160 ~~~~~e~a~~llpYl~elG~T~IELMPv~e~p~~ 193 (628)
T COG0296 160 FLGYFELAIELLPYLKELGITHIELMPVAEHPGD 193 (628)
T ss_pred CcCHHHHHHHHhHHHHHhCCCEEEEcccccCCCC
Confidence 5678999999999999999999997 4667763
No 25
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.15 E-value=5.7e-06 Score=56.25 Aligned_cols=44 Identities=18% Similarity=0.179 Sum_probs=37.0
Q ss_pred eEEEeeecccccceeEEecccccccccccceeeCCCCeEEEEcCCCCCCC
Q psy9007 83 CASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGS 132 (132)
Q Consensus 83 v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~~~~G~We~~ip~~~~G~ 132 (132)
+.+|++|||+|. +|.++.++ + ...+|.+.+.|+|++++++. .|.
T Consensus 9 ~~~F~vwAP~A~-~V~l~l~~--~--~~~~m~~~~~G~W~~~v~~~-~g~ 52 (85)
T cd02853 9 GTRFRLWAPDAK-RVTLRLDD--G--EEIPMQRDGDGWFEAEVPGA-AGT 52 (85)
T ss_pred CEEEEEeCCCCC-EEEEEecC--C--CcccCccCCCcEEEEEeCCC-CCC
Confidence 489999999999 99999875 3 35789887789999999987 663
No 26
>PRK14705 glycogen branching enzyme; Provisional
Probab=98.13 E-value=5.4e-07 Score=86.83 Aligned_cols=93 Identities=13% Similarity=0.189 Sum_probs=72.2
Q ss_pred eeEEEecCCcceeecCccceEEecCCCCCCceeeEEeCCCCCCCccccCCCC-----C---CCchHHHhhcccceEecCC
Q psy9007 10 TRTLIFRYLLPISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKP-----K---KPENLKIYESHVGICTQEQ 81 (132)
Q Consensus 10 ~~~~~~~~~~~~dRip~w~~~v~q~~~~~~~f~~~~w~P~~~~~Y~f~~~~p-----~---~p~~~~IYEaHvg~~~~~~ 81 (132)
|=.|....|+++++.+||++.+.+++. + .++++++. |+|++... + ..+.+.|||+|+|..+.
T Consensus 691 ky~i~~~~g~~~~k~DPyA~~~e~~p~-~---aS~V~d~~----~~w~d~~W~~~r~~~~~~~~p~~IYEvHvgsf~~-- 760 (1224)
T PRK14705 691 KFEILTKAGQWVEKADPLAFGTEVPPL-T---ASRVVEAS----YAFKDAEWMSARAERDPHNSPMSVYEVHLGSWRL-- 760 (1224)
T ss_pred EEEEEcCCCcEEecCCccccccccCCC-C---CeEEeCCC----CCcCChhhhhccccCCCCcCCcEEEEEEeccccc--
Confidence 445555668889999999999988764 3 57999985 98887632 1 12678999999998765
Q ss_pred ceEEEeeecccccceeEEeccccccc--ccccce
Q psy9007 82 KCASYEDFVRVVIPRIVKQGDFNNWN--REEFAY 113 (132)
Q Consensus 82 ~v~tF~~wApnalP~V~~lG~nn~W~--~~~~~m 113 (132)
..+|++.+...+|+|+.+|++++|. ..++|.
T Consensus 761 -~~~~~~l~~~lldYlk~LGvt~IeLmPv~e~p~ 793 (1224)
T PRK14705 761 -GLGYRELAKELVDYVKWLGFTHVEFMPVAEHPF 793 (1224)
T ss_pred -CCchHHHHHHHHHHHHHhCCCEEEECccccCCC
Confidence 2579999999889999999999997 344553
No 27
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=98.00 E-value=9.2e-06 Score=57.61 Aligned_cols=39 Identities=23% Similarity=0.400 Sum_probs=34.5
Q ss_pred hheeeEEEecCCcceeecCccceEEecCCCCCCceeeEEe
Q psy9007 7 QYITRTLIFRYLLPISRLSPWATYVTEPPVVGHAYEQRIW 46 (132)
Q Consensus 7 ~~~~~~~~~~~~~~~dRip~w~~~v~q~~~~~~~f~~~~w 46 (132)
++.|=.|...+|++++|+||||++++++++ +.+|+|+||
T Consensus 61 ~~Yky~i~~~~G~~~~~~DPyA~~~~~~~~-~~~~~~~~~ 99 (99)
T cd02854 61 SKIKVRMVTPSGEWIDRIPAWIKYVTQDKE-TALYDGVFW 99 (99)
T ss_pred CEEEEEEEeCCCCEEEEcCcceeEEEeCCC-CcceeeEEC
Confidence 466777777789999999999999999988 779999998
No 28
>PRK12568 glycogen branching enzyme; Provisional
Probab=97.91 E-value=1.6e-06 Score=79.97 Aligned_cols=89 Identities=17% Similarity=0.209 Sum_probs=68.4
Q ss_pred EEEecCCcceeecCccceEEecCCCCCCceeeEEeCCCCCCCccccCCCC-------CCCchHHHhhcccceEecC--Cc
Q psy9007 12 TLIFRYLLPISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKP-------KKPENLKIYESHVGICTQE--QK 82 (132)
Q Consensus 12 ~~~~~~~~~~dRip~w~~~v~q~~~~~~~f~~~~w~P~~~~~Y~f~~~~p-------~~p~~~~IYEaHvg~~~~~--~~ 82 (132)
.|....|+...+++|||+.+..+++ + .+++.++. +|+|++... ...+.+.|||+|+|..+.. ++
T Consensus 192 eI~~~~G~~~~k~DPYA~~~e~~p~-~---asvV~~~~---~~~W~d~~W~~~r~~~~~~~~~~IYEvHvgsf~~~~~~~ 264 (730)
T PRK12568 192 AITAADGRVLLKADPVARQTELPPA-T---ASVVPSAA---AFAWTDAAWMARRDPAAVPAPLSIYEVHAASWRRDGHNQ 264 (730)
T ss_pred EEEcCCCeEeecCCCcceEeecCCC-C---CeEEcCCC---CCCCCChhhhhcccccCCCCCcEEEEEEhHHhcCCCCCC
Confidence 4444567778899999999988765 3 56787753 488876632 2347889999999987643 23
Q ss_pred eEEEeeecccccceeEEeccccccc
Q psy9007 83 CASYEDFVRVVIPRIVKQGDFNNWN 107 (132)
Q Consensus 83 v~tF~~wApnalP~V~~lG~nn~W~ 107 (132)
..+|+..|...+|+|+.+|++++|.
T Consensus 265 ~~~~~~la~~ll~ylk~LGvt~I~L 289 (730)
T PRK12568 265 PLDWPTLAEQLIPYVQQLGFTHIEL 289 (730)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 4689999999889999999999997
No 29
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=97.87 E-value=2.3e-06 Score=76.96 Aligned_cols=88 Identities=19% Similarity=0.315 Sum_probs=65.2
Q ss_pred eeEEEecCCcceeecCccceEEecCCCCCCceeeEEeCCCCCCCcc-----ccCCCCCC-C--chHHHhhcccceEecCC
Q psy9007 10 TRTLIFRYLLPISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHK-----WTSSKPKK-P--ENLKIYESHVGICTQEQ 81 (132)
Q Consensus 10 ~~~~~~~~~~~~dRip~w~~~v~q~~~~~~~f~~~~w~P~~~~~Y~-----f~~~~p~~-p--~~~~IYEaHvg~~~~~~ 81 (132)
+=.|....|+...+++|||+.+.++++ + .+++.+|+ .|. |++.++++ | +.+.|||+|++..+.+
T Consensus 81 ~y~v~~~~g~~~~~~DPYA~~~~~~~~-~---~s~v~d~~---~~~w~~~~w~~~~~~~~~~~~~~~iYe~hv~~~~~~- 152 (613)
T TIGR01515 81 KYEIVTNNGEIRLKADPYAFYAEVRPN-T---ASLVYDLE---GYSWQDQKWQEKRKAKTPYEKPVSIYELHLGSWRHG- 152 (613)
T ss_pred EEEEECCCCcEEEeCCCCEeeeccCCC-C---cEEEECCc---cCccCchhhhhcccccCcccCCceEEEEehhhccCC-
Confidence 334444456777899999999988754 3 56788875 354 44444321 2 4678999999988653
Q ss_pred ceEEEeeecccccceeEEeccccccc
Q psy9007 82 KCASYEDFVRVVIPRIVKQGDFNNWN 107 (132)
Q Consensus 82 ~v~tF~~wApnalP~V~~lG~nn~W~ 107 (132)
++|+..+...+|+|+.||++++|.
T Consensus 153 --g~~~~i~~~l~dyl~~LGvt~i~L 176 (613)
T TIGR01515 153 --LSYRELADQLIPYVKELGFTHIEL 176 (613)
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEE
Confidence 689999999769999999999997
No 30
>PLN03244 alpha-amylase; Provisional
Probab=97.86 E-value=1.3e-05 Score=74.81 Aligned_cols=45 Identities=27% Similarity=0.499 Sum_probs=40.2
Q ss_pred eEEEeeecccccceeEEeccccccccccccee-----eCCCCeEEEEcCCC
Q psy9007 83 CASYEDFVRVVIPRIVKQGDFNNWNREEFAYK-----KLDFGKWELVLPPN 128 (132)
Q Consensus 83 v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~-----~~~~G~We~~ip~~ 128 (132)
...|+||||.|. ...++|+||+|++.++.-+ ++++|.|++++++.
T Consensus 132 ~~~~~ewapga~-~~~~~gdfn~w~~~~~~~r~~~~~~~~~g~~~~~~~~~ 181 (872)
T PLN03244 132 RVDFMDWAPGAR-YCAIIGDFNGWSPTENAAREGHFGHDDYGYWFIILEDK 181 (872)
T ss_pred CceeEeecCCcc-eeeeeccccCCCccccccccccccccccceEEEEechh
Confidence 389999999999 9999999999999888744 78889999999864
No 31
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.85 E-value=4.6e-05 Score=49.37 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=38.6
Q ss_pred eEEEeeecccccceeEEecccccccccccceeeCCCCeEEEEcCCCC
Q psy9007 83 CASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNP 129 (132)
Q Consensus 83 v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~~~~G~We~~ip~~~ 129 (132)
..+|++|||++. +|.++++++.| ...++|.+...|+|++.++...
T Consensus 5 ~v~f~v~ap~a~-~v~l~~~~~~~-~~~~~~~~~~~g~w~~~v~~~~ 49 (83)
T cd02688 5 GVTFTVRGPKAQ-RVSLAGSFNGD-TQLIPMTKVEDGYWEVELPLPS 49 (83)
T ss_pred cEEEEEECCCCC-EEEEEEEECCC-CCcccCEECCCceEEEEEcCCC
Confidence 489999999998 99999999874 3468998877799999998765
No 32
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.84 E-value=3.9e-05 Score=54.93 Aligned_cols=48 Identities=6% Similarity=-0.059 Sum_probs=37.4
Q ss_pred eEEEeeecccccceeEEeccccccc---c-cccceeeCC---CCeEEEEcCCCCCCC
Q psy9007 83 CASYEDFVRVVIPRIVKQGDFNNWN---R-EEFAYKKLD---FGKWELVLPPNPDGS 132 (132)
Q Consensus 83 v~tF~~wApnalP~V~~lG~nn~W~---~-~~~~m~~~~---~G~We~~ip~~~~G~ 132 (132)
+.+|++|||+|. +|.++.|+ .|+ . ...+|.+.+ .|+|+++|++...|.
T Consensus 8 g~~F~vwAP~A~-~V~L~lf~-~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~g~ 62 (119)
T cd02852 8 GVNFSVYSSNAT-AVELLLFD-PGDGDEPALEIELDPSVNRTGDVWHVFVEGLKPGQ 62 (119)
T ss_pred CEEEEEECCCCC-EEEEEEEe-CCCCCCceEEEeCcCcccccCCEEEEEECCCCCCC
Confidence 489999999999 99999975 333 1 346786543 599999999988774
No 33
>KOG0470|consensus
Probab=97.81 E-value=1.8e-05 Score=73.04 Aligned_cols=52 Identities=35% Similarity=0.726 Sum_probs=45.2
Q ss_pred cCCceEEEeeecccccceeEEeccccccccccccee-eCCCCeEEEEcCCCCCCC
Q psy9007 79 QEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYK-KLDFGKWELVLPPNPDGS 132 (132)
Q Consensus 79 ~~~~v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~-~~~~G~We~~ip~~~~G~ 132 (132)
.+++ .+|.+|||.+. .+.++||+|+|+.....|. +++.|.|++.+|+..+||
T Consensus 111 ~d~~-v~~~ewaP~a~-~~s~~gd~n~W~~~~~~~~~k~~~g~w~i~l~~~~~~s 163 (757)
T KOG0470|consen 111 PDGR-VDFTEWAPLAE-AVSLIGDFNNWNPSSNELKPKDDLGVWEIDLPPKVNGS 163 (757)
T ss_pred CCCc-eeeeeeccccc-ccccccccCCCCCcccccCcccccceeEEecCcccCCC
Confidence 3444 89999999988 9999999999998888887 678899999999886664
No 34
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=97.79 E-value=1.2e-05 Score=72.13 Aligned_cols=86 Identities=16% Similarity=0.204 Sum_probs=64.8
Q ss_pred CCcceeecCccceEEecCCCCCCceeeEEeCCCCCCCccccCCC-C--CCCchHHHhhcccceEecCCc-----eEEEee
Q psy9007 17 YLLPISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSK-P--KKPENLKIYESHVGICTQEQK-----CASYED 88 (132)
Q Consensus 17 ~~~~~dRip~w~~~v~q~~~~~~~f~~~~w~P~~~~~Y~f~~~~-p--~~p~~~~IYEaHvg~~~~~~~-----v~tF~~ 88 (132)
.+.....++|||+.+..+.. .+++.++...+++.|...+ + ..++...|||+||+.++.... .++|+-
T Consensus 80 ~~~~~~~~DPya~~~~~~~~-----~s~v~d~~~~~~~~w~~~~~~~~~~~~~~vIYElhv~~ft~~~~~~~~~~G~f~~ 154 (605)
T TIGR02104 80 NGKWRETVDPYAKAVTVNGK-----RGAVIDLERTNPEGWEKDHRPRLENPEDAIIYELHIRDFSIHENSGVKNKGKYLG 154 (605)
T ss_pred CCCeEEEcCCCcceeccCCC-----cEEEEcccccCccCcccccCCCCCChhHcEEEEEecchhccCCCCCcCCCCceee
Confidence 34556789999999887642 4688888644567887765 3 345778999999997653221 278999
Q ss_pred eccc----------ccceeEEeccccccc
Q psy9007 89 FVRV----------VIPRIVKQGDFNNWN 107 (132)
Q Consensus 89 wApn----------alP~V~~lG~nn~W~ 107 (132)
++.. .||+|+.||.+++|.
T Consensus 155 ~~e~~~~~~~g~~~~LdyL~~LGvt~I~L 183 (605)
T TIGR02104 155 LTETGTKGPNGVSTGLDYLKELGVTHVQL 183 (605)
T ss_pred eeccCccccccchhHHHHHHHcCCCEEEe
Confidence 9876 379999999999997
No 35
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=97.72 E-value=5.8e-05 Score=67.79 Aligned_cols=48 Identities=13% Similarity=0.106 Sum_probs=39.4
Q ss_pred eEEEeeecccccceeEEecccccccc----cccceeeCCCCeEEEEcCCCCCCC
Q psy9007 83 CASYEDFVRVVIPRIVKQGDFNNWNR----EEFAYKKLDFGKWELVLPPNPDGS 132 (132)
Q Consensus 83 v~tF~~wApnalP~V~~lG~nn~W~~----~~~~m~~~~~G~We~~ip~~~~G~ 132 (132)
+.+|++|||+|. +|.+++++ .|+. +.++|.+...|+|+++||+...|.
T Consensus 20 ~~~F~vwaP~a~-~V~l~~~~-~~~~~~~~~~~~m~~~~~gvw~~~i~~~~~g~ 71 (605)
T TIGR02104 20 KTVFRVWAPTAT-EVELLLYK-SGEDGEPYKVVKMKRGENGVWSAVLEGDLHGY 71 (605)
T ss_pred eeEEEEECCCCC-EEEEEEEc-CCCCCccceEEecccCCCCEEEEEECCCCCCC
Confidence 489999999999 99999865 4542 367898877899999999887774
No 36
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=97.46 E-value=0.00022 Score=67.39 Aligned_cols=49 Identities=6% Similarity=0.036 Sum_probs=41.6
Q ss_pred eEEEeeecccccceeEEeccccccc-ccccceeeC-CCCeEEEEcCCCCCCC
Q psy9007 83 CASYEDFVRVVIPRIVKQGDFNNWN-REEFAYKKL-DFGKWELVLPPNPDGS 132 (132)
Q Consensus 83 v~tF~~wApnalP~V~~lG~nn~W~-~~~~~m~~~-~~G~We~~ip~~~~G~ 132 (132)
+.+|++|||+|. +|.+++|.+.++ ...++|.+. ..|+|++++|+...|.
T Consensus 136 gv~FrVWAPtA~-~V~L~Ly~~~~~~~~~~~M~~~~~~GVWsv~v~g~~~G~ 186 (898)
T TIGR02103 136 GVTFRLWAPTAQ-QVKLHIYSASKKVETTLPMTRDSTSGVWSAEGGSSWKGA 186 (898)
T ss_pred cEEEEEECCCCC-EEEEEEEcCCCCccceEeCccCCCCCEEEEEECcCCCCC
Confidence 489999999999 999999987764 556899875 6799999999887773
No 37
>PRK03705 glycogen debranching enzyme; Provisional
Probab=97.27 E-value=0.00059 Score=62.44 Aligned_cols=49 Identities=14% Similarity=0.073 Sum_probs=40.6
Q ss_pred eEEEeeecccccceeEEecccccccccccceeeCCCCeEEEEcCCCCCCC
Q psy9007 83 CASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGS 132 (132)
Q Consensus 83 v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~~~~G~We~~ip~~~~G~ 132 (132)
+++|++|||+|. +|.++.|........++|.+.+.|+|+++||+..+|.
T Consensus 20 g~~F~vwAP~A~-~V~L~l~~~~~~~~~~~m~~~~~gvW~~~v~~~~~G~ 68 (658)
T PRK03705 20 GVNFTLFSAHAE-RVELCVFDENGQEQRYDLPARSGDIWHGYLPGARPGL 68 (658)
T ss_pred CEEEEEECCCCC-EEEEEEEcCCCCeeeEeeeeccCCEEEEEECCCCCCC
Confidence 489999999999 9999987654344567898777799999999988874
No 38
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=97.05 E-value=9.1e-05 Score=65.98 Aligned_cols=77 Identities=19% Similarity=0.292 Sum_probs=61.3
Q ss_pred ceeecCccceEEecCCCCCCceeeEEeCCCCCCCccccCCCCC--CCchHHHhhcccceEecCCceEEEeeeccccccee
Q psy9007 20 PISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPK--KPENLKIYESHVGICTQEQKCASYEDFVRVVIPRI 97 (132)
Q Consensus 20 ~~dRip~w~~~v~q~~~~~~~f~~~~w~P~~~~~Y~f~~~~p~--~p~~~~IYEaHvg~~~~~~~v~tF~~wApnalP~V 97 (132)
....++||++.+....+ + .+++++|. .|+|+++.++ +.+...|||+|++.++.+ ++|+..+.. ||+|
T Consensus 52 ~~~v~DPya~~~~~~~~-~---~S~V~d~~---~~~w~~~~~~~~~~~~~viYE~hv~~f~~~---G~~~gi~~~-l~yl 120 (542)
T TIGR02402 52 GTPVPDPASRRQPDGVH-G---PSQVVDPD---RYAWQDTGWRGRPLEEAVIYELHVGTFTPE---GTFDAAIEK-LPYL 120 (542)
T ss_pred eEEecCccccccccCCC-C---CeEEecCc---ccCCCCccccCCCccccEEEEEEhhhcCCC---CCHHHHHHh-hHHH
Confidence 35678999998755443 3 58999986 4999988763 347889999999988763 578888887 7899
Q ss_pred EEeccccccc
Q psy9007 98 VKQGDFNNWN 107 (132)
Q Consensus 98 ~~lG~nn~W~ 107 (132)
+.+|++++|.
T Consensus 121 ~~LGv~~i~L 130 (542)
T TIGR02402 121 ADLGITAIEL 130 (542)
T ss_pred HHcCCCEEEe
Confidence 9999999997
No 39
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=96.93 E-value=0.0015 Score=63.06 Aligned_cols=45 Identities=16% Similarity=0.135 Sum_probs=37.0
Q ss_pred EEEeeecccccceeEEecccc-cccc--cccceeeCCCCeEEEEcCCCC
Q psy9007 84 ASYEDFVRVVIPRIVKQGDFN-NWNR--EEFAYKKLDFGKWELVLPPNP 129 (132)
Q Consensus 84 ~tF~~wApnalP~V~~lG~nn-~W~~--~~~~m~~~~~G~We~~ip~~~ 129 (132)
.+|++|||+|. +|.+++|.. .++. ..++|.+.+.|+|+++|++..
T Consensus 329 v~F~vWAP~A~-~V~L~lyd~~~~~~~~~~~~m~~~~~GvW~v~v~~~~ 376 (1111)
T TIGR02102 329 VTLKLWSPSAD-HVSVVLYDKDDQDKVVGTVELKKGDRGVWEVQLTKEN 376 (1111)
T ss_pred EEEEEECCCCC-EEEEEEEeCCCCCCceeeEecccCCCCEEEEEECCcc
Confidence 68999999999 999999854 4542 468998877899999999643
No 40
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=96.64 E-value=0.0039 Score=42.11 Aligned_cols=43 Identities=21% Similarity=0.367 Sum_probs=33.8
Q ss_pred EEEeeecccccceeEEecccccccccccceeeCCCCeEEEEcCCCCCC
Q psy9007 84 ASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDG 131 (132)
Q Consensus 84 ~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~~~~G~We~~ip~~~~G 131 (132)
.+|+-.+ .+. .|.+.|.|++|+. ..||.+.++| |++.++ .+.|
T Consensus 4 v~f~~~~-~a~-~V~v~G~F~~W~~-~~pm~~~~~~-~~~~~~-L~~g 46 (79)
T cd02859 4 TTFVWPG-GGK-EVYVTGSFDNWKK-KIPLEKSGKG-FSATLR-LPPG 46 (79)
T ss_pred EEEEEcC-CCc-EEEEEEEcCCCCc-cccceECCCC-cEEEEE-cCCC
Confidence 5677777 667 8999999999986 6899987667 988884 3444
No 41
>PRK03705 glycogen debranching enzyme; Provisional
Probab=96.61 E-value=0.00054 Score=62.72 Aligned_cols=83 Identities=18% Similarity=0.135 Sum_probs=57.3
Q ss_pred eeecCccceEEecCCCCCC-----------------ceeeEEeCCCCCCCccccCCCCCC--CchHHHhhcccceEec-C
Q psy9007 21 ISRLSPWATYVTEPPVVGH-----------------AYEQRIWNPKPQDKHKWTSSKPKK--PENLKIYESHVGICTQ-E 80 (132)
Q Consensus 21 ~dRip~w~~~v~q~~~~~~-----------------~f~~~~w~P~~~~~Y~f~~~~p~~--p~~~~IYEaHvg~~~~-~ 80 (132)
..-++|||+.++.....+. ...+++.++ +|.|++..++. .+...|||+||+..+. .
T Consensus 90 ~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~----~~~W~~~~~p~~~~~~~vIYE~hvr~ft~~~ 165 (658)
T PRK03705 90 KLLIDPCARQVEGEVKDDPRLHGGHDEPDYRDNAAIAPKCVVVDD----HYDWEDDAPPRTPWGSTVIYEAHVRGLTYLH 165 (658)
T ss_pred cEecCcCceEEccccccCccccccccCCccccccccCCceEEecC----CCCCCCCCCCCCCccccEEEEEehhhhcccC
Confidence 4469999999987421011 123455554 49999876532 3678899999976542 1
Q ss_pred Cc-----eEEEeeeccc-ccceeEEeccccccc
Q psy9007 81 QK-----CASYEDFVRV-VIPRIVKQGDFNNWN 107 (132)
Q Consensus 81 ~~-----v~tF~~wApn-alP~V~~lG~nn~W~ 107 (132)
+. -++|+-.+.. .|++++.||.+++|.
T Consensus 166 ~~~~~~~~Gtf~g~~~~~~LdYLk~LGvt~I~L 198 (658)
T PRK03705 166 PEIPVEIRGTYAALGHPVMIAYLKQLGITALEL 198 (658)
T ss_pred CCCCccccccHHHhhcccchHHHHHcCCCEEEe
Confidence 11 2789888864 589999999999997
No 42
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=96.33 E-value=0.0088 Score=55.09 Aligned_cols=48 Identities=10% Similarity=0.029 Sum_probs=37.6
Q ss_pred eEEEeeecccccceeEEeccccccc---ccccceeeCCCCeEEEEcCCCCCCC
Q psy9007 83 CASYEDFVRVVIPRIVKQGDFNNWN---REEFAYKKLDFGKWELVLPPNPDGS 132 (132)
Q Consensus 83 v~tF~~wApnalP~V~~lG~nn~W~---~~~~~m~~~~~G~We~~ip~~~~G~ 132 (132)
+++|++|||+|. +|.++-|.. ++ ...++|.+...|+|+++||+..+|.
T Consensus 15 g~~F~vwap~A~-~V~L~l~~~-~~~~~~~~~~m~~~~~gvW~~~v~~~~~g~ 65 (688)
T TIGR02100 15 GVNFALFSANAE-KVELCLFDA-QGEKEEARLPLPERTDDIWHGYLPGAQPGQ 65 (688)
T ss_pred cEEEEEECCCCC-EEEEEEEcC-CCCceeeEEecccCCCCEEEEEECCCCCCC
Confidence 489999999999 999875532 32 1357888776799999999988773
No 43
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=96.07 E-value=0.0014 Score=60.29 Aligned_cols=84 Identities=21% Similarity=0.252 Sum_probs=58.8
Q ss_pred ceeecCccceEEecCCCC-C-----------------------CceeeEEeCCCCCCCccccCC--CCCC-CchHHHhhc
Q psy9007 20 PISRLSPWATYVTEPPVV-G-----------------------HAYEQRIWNPKPQDKHKWTSS--KPKK-PENLKIYES 72 (132)
Q Consensus 20 ~~dRip~w~~~v~q~~~~-~-----------------------~~f~~~~w~P~~~~~Y~f~~~--~p~~-p~~~~IYEa 72 (132)
....++|||+.+..+..- . ....+++.+++ |.|++. +|.. .+...|||+
T Consensus 86 ~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~d~~----~~w~~~~~~p~~~~~d~iIYE~ 161 (688)
T TIGR02100 86 NKLLLDPYAKALDGDLIWDDALFGYRIGHPDQDLSFDERDSAPGMPKAVVVDPD----FDWGGDEQRPRTPWEDTIIYEA 161 (688)
T ss_pred CceecCcCceeecCCCcccccccccccccccccccccccccccccCceEEeCCC----CCCCCcccCCCCCccccEEEEE
Confidence 355799999999865210 0 01246777765 899876 3333 377899999
Q ss_pred ccceEecC-C-----ceEEEeeeccc-ccceeEEeccccccc
Q psy9007 73 HVGICTQE-Q-----KCASYEDFVRV-VIPRIVKQGDFNNWN 107 (132)
Q Consensus 73 Hvg~~~~~-~-----~v~tF~~wApn-alP~V~~lG~nn~W~ 107 (132)
||+.++.. + ..++|+-.+.. .||.|+.||.+++|.
T Consensus 162 hvr~Ft~~~~~~~~~~~Gtf~Gi~~~~~LdyLk~LGvtaI~L 203 (688)
T TIGR02100 162 HVKGFTQLHPDIPEELRGTYAGLAHPAMIDYLKKLGVTAVEL 203 (688)
T ss_pred EhHHhcCCCCCCCcccccCHHHHhccchhHHHHHcCCCEEEE
Confidence 99865432 1 12788888874 589999999999997
No 44
>PLN02877 alpha-amylase/limit dextrinase
Probab=96.00 E-value=0.013 Score=56.05 Aligned_cols=59 Identities=15% Similarity=0.126 Sum_probs=40.9
Q ss_pred hhcccceEecCCceEEEeeecccccceeEEeccccc--ccc-cccceeeCCCCeEEEEcCCCCCC
Q psy9007 70 YESHVGICTQEQKCASYEDFVRVVIPRIVKQGDFNN--WNR-EEFAYKKLDFGKWELVLPPNPDG 131 (132)
Q Consensus 70 YEaHvg~~~~~~~v~tF~~wApnalP~V~~lG~nn~--W~~-~~~~m~~~~~G~We~~ip~~~~G 131 (132)
|+...|..-... +.+|++|||+|. +|.++-|.+. +.. ..++|. ...|+|++++++..+|
T Consensus 211 y~~~LGA~~~~~-g~~F~VWAPtA~-~V~L~lyd~~~~~~~~~~~~m~-~~~GVWsv~v~~~~~G 272 (970)
T PLN02877 211 YDGPLGAHFSKD-AVSLYLWAPTAQ-AVSLCLYDDPRGKEPLEIVQLK-ESNGVWSVEGPKSWEG 272 (970)
T ss_pred CCCCCcceEecC-CEEEEEECCCCC-EEEEEEecCCCCccceEEeccc-CCCCEEEEEeccCCCC
Confidence 444455332223 489999999999 9999987542 222 235676 5579999999987776
No 45
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=95.87 E-value=0.0021 Score=62.09 Aligned_cols=91 Identities=19% Similarity=0.215 Sum_probs=63.7
Q ss_pred cCCcceeecCccceEEec-CCC----CCCceeeEEeCCCCC--CCccccCCCC-CCCchHHHhhcccceEecCC------
Q psy9007 16 RYLLPISRLSPWATYVTE-PPV----VGHAYEQRIWNPKPQ--DKHKWTSSKP-KKPENLKIYESHVGICTQEQ------ 81 (132)
Q Consensus 16 ~~~~~~dRip~w~~~v~q-~~~----~~~~f~~~~w~P~~~--~~Y~f~~~~p-~~p~~~~IYEaHvg~~~~~~------ 81 (132)
..++....++|||+.+.. +.. ......+++++++.- +.|.|.+..+ ..++...|||+||+.++...
T Consensus 393 ~~~~~~~~~DPYA~al~~~n~~~~~~~~~~~ks~vvD~~~~~p~~~~~~~~~~~~~~~d~vIYElHVrdFt~d~~~~~~~ 472 (1111)
T TIGR02102 393 RGGDKVLALDPYAKSLAAWNDATSDDQIKVAKAAFVDPSSLGPQELDFAKIENFKKREDAIIYEAHVRDFTSDPAIAGDL 472 (1111)
T ss_pred CCCceEEEeChhheEEeccCcccccccCCCCceEEEcCcccCccccccccccccCCccceEEEEEechhhCcCCCCCccc
Confidence 346677889999999874 210 011235788887521 2488876333 34678899999999765321
Q ss_pred --ceEEEeeecccccceeEEeccccccc
Q psy9007 82 --KCASYEDFVRVVIPRIVKQGDFNNWN 107 (132)
Q Consensus 82 --~v~tF~~wApnalP~V~~lG~nn~W~ 107 (132)
..++|+-++.+ |++|+.||.+++|.
T Consensus 473 ~~~~Gtf~gl~ek-LdYLkeLGVT~I~L 499 (1111)
T TIGR02102 473 TAQFGTFAAFVEK-LDYLQDLGVTHIQL 499 (1111)
T ss_pred ccCCcCHHHHHHh-HHHHHHcCCCEEEE
Confidence 13789999998 78999999999997
No 46
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=95.30 E-value=0.0098 Score=56.50 Aligned_cols=83 Identities=12% Similarity=0.238 Sum_probs=57.1
Q ss_pred cceeecCccceEEecCCCCCCceeeEEeCCCCC--CCccccCCC---CC--CCchHHHhhcccceEec-------CCceE
Q psy9007 19 LPISRLSPWATYVTEPPVVGHAYEQRIWNPKPQ--DKHKWTSSK---PK--KPENLKIYESHVGICTQ-------EQKCA 84 (132)
Q Consensus 19 ~~~dRip~w~~~v~q~~~~~~~f~~~~w~P~~~--~~Y~f~~~~---p~--~p~~~~IYEaHvg~~~~-------~~~v~ 84 (132)
+....++||++.+..+.. -+++.++... ++..|...+ |. .++...|||+||+-++. +.+ +
T Consensus 203 ~~~~v~DPYA~als~n~~-----~S~VvDl~~~~~~p~~W~~~~~p~p~~~~~~d~iIYElHVRDFS~~d~s~~~~~r-G 276 (898)
T TIGR02103 203 ETYLVTDPYSVSLSANSE-----YSQVVDLNDPALKPEGWDALAMPKPQLASFADMVLYELHIRDFSANDESVPAELR-G 276 (898)
T ss_pred CCeEEeCcCcceEcCCCC-----CeEEeCCccccCCCcchhhcccccCCcCCCcccEEEEEeccccccCCCCCCcCcC-c
Confidence 356789999999976532 4677776521 466787554 32 45788999999997652 122 7
Q ss_pred EEeeeccc------ccceeEEeccccccc
Q psy9007 85 SYEDFVRV------VIPRIVKQGDFNNWN 107 (132)
Q Consensus 85 tF~~wApn------alP~V~~lG~nn~W~ 107 (132)
+|.-++.. .|+.++.+|.++++.
T Consensus 277 tYla~tE~~t~gi~hLk~L~eLGVThVeL 305 (898)
T TIGR02103 277 KYLAFTAADSAGVQHLKKLADAGVTHLHL 305 (898)
T ss_pred eeeehhccchhhhHHHHHHHhCCCcEEEE
Confidence 89999875 244555779998876
No 47
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=94.20 E-value=0.081 Score=51.78 Aligned_cols=49 Identities=12% Similarity=0.104 Sum_probs=37.2
Q ss_pred ceEEEeeecccccceeEEeccccccccc---ccceeeCCCCeEEEEcCCCCCCC
Q psy9007 82 KCASYEDFVRVVIPRIVKQGDFNNWNRE---EFAYKKLDFGKWELVLPPNPDGS 132 (132)
Q Consensus 82 ~v~tF~~wApnalP~V~~lG~nn~W~~~---~~~m~~~~~G~We~~ip~~~~G~ 132 (132)
++++|++|||+|. +|.++ .++.|+.. ..+|.....|+|.++|++...|.
T Consensus 23 ~gv~F~v~ap~A~-~V~L~-lf~~~~~~~~~~~~l~~~~g~vW~~~i~~~~~g~ 74 (1221)
T PRK14510 23 GGVNLALFSGAAE-RVEFC-LFDLWGVREEARIKLPGRTGDVWHGFIVGVGPGA 74 (1221)
T ss_pred CeEEEEEECCCCC-EEEEE-EEECCCCCeeEEEECCCCcCCEEEEEEccCCCCc
Confidence 3589999999999 89887 55566532 35665455799999999988773
No 48
>PLN02877 alpha-amylase/limit dextrinase
Probab=88.96 E-value=0.17 Score=48.79 Aligned_cols=83 Identities=16% Similarity=0.235 Sum_probs=52.4
Q ss_pred ceeecCccceEEecCCCCCCceeeEEeCCCCC--CCccccC---CCC--CCCchHHHhhcccceEecC-Cc-----eEEE
Q psy9007 20 PISRLSPWATYVTEPPVVGHAYEQRIWNPKPQ--DKHKWTS---SKP--KKPENLKIYESHVGICTQE-QK-----CASY 86 (132)
Q Consensus 20 ~~dRip~w~~~v~q~~~~~~~f~~~~w~P~~~--~~Y~f~~---~~p--~~p~~~~IYEaHvg~~~~~-~~-----v~tF 86 (132)
....++||++.+..+.. .+++-++... ++..|.. ++| ..++...|||+||+-++.. .. -++|
T Consensus 291 ~~~v~DPYA~als~ng~-----~S~vvDl~~~~~~p~gW~~~~~~~p~~~~~~D~VIYElHVRDFS~~d~sv~~~~RGty 365 (970)
T PLN02877 291 TCYANDPYARGLSADGR-----RTLLVDLDSDDLKPEGWDNLAKEKPCLLSFSDISIYELHVRDFSANDETVHPDFRGGY 365 (970)
T ss_pred ccccCCccceEEecCCC-----ceEEECCccccCCChhhhhcccccCccCCCcccEEEEEeccccccCCCCCCcCCCCcc
Confidence 44578999999987532 2334444311 3456764 334 2357889999999876532 11 1789
Q ss_pred eeeccc---c---cceeEEeccccccc
Q psy9007 87 EDFVRV---V---IPRIVKQGDFNNWN 107 (132)
Q Consensus 87 ~~wApn---a---lP~V~~lG~nn~W~ 107 (132)
.-|+.. . |+.++.+|.++++.
T Consensus 366 lgftE~~s~gi~hLk~LkelGVThVeL 392 (970)
T PLN02877 366 LAFTSQDSAGVLHLKKLADAGLTHVHL 392 (970)
T ss_pred hhhhhhhhhHHHHHHHHHHcCCCEEEe
Confidence 888876 1 33455569998886
No 49
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=85.99 E-value=0.25 Score=48.49 Aligned_cols=87 Identities=18% Similarity=0.263 Sum_probs=53.4
Q ss_pred eeecCccceEEecCCC-CCCceeeEEeC------------CCC--CCCccccCCCCCC-C-chHHHhhcccceEec-CC-
Q psy9007 21 ISRLSPWATYVTEPPV-VGHAYEQRIWN------------PKP--QDKHKWTSSKPKK-P-ENLKIYESHVGICTQ-EQ- 81 (132)
Q Consensus 21 ~dRip~w~~~v~q~~~-~~~~f~~~~w~------------P~~--~~~Y~f~~~~p~~-p-~~~~IYEaHvg~~~~-~~- 81 (132)
-.-++|||+.+.-... ...+|.-++.+ |.. ..+|.|...++.. + +...|||+|++..+. ..
T Consensus 96 ~~~lDPYA~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~pk~vv~~~~~W~~~~~~~~~~~d~vIYE~hvr~ft~~~~~ 175 (1221)
T PRK14510 96 KLLVDPYARPLDRPFWLHQAIFDDRFFNGDEDLTDSAVLVPKVVVPTPFTWAPRSPLHGDWDDSPLYEMNVRGFTLRHDF 175 (1221)
T ss_pred eEeeCCCCceEeCCcccCcccccccccCCCcccccCcccCccceeecccccCCCCCCCCCcccCeEEEEccchhhccCCC
Confidence 3468899999876321 01122222222 210 0158897766532 2 455699999975532 11
Q ss_pred ----ceEEEeeec-ccccceeEEeccccccc
Q psy9007 82 ----KCASYEDFV-RVVIPRIVKQGDFNNWN 107 (132)
Q Consensus 82 ----~v~tF~~wA-pnalP~V~~lG~nn~W~ 107 (132)
.-++|...+ |..+++++.||.+++|.
T Consensus 176 ~gg~~~Gt~~~l~~~~~i~yLk~LGvt~I~L 206 (1221)
T PRK14510 176 FPGNLRGTFAKLAAPEAISYLKKLGVSIVEL 206 (1221)
T ss_pred CCcccCcHHhhcCCchhHHHHHHcCCCEEEe
Confidence 127888887 55688999999999997
No 50
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=79.26 E-value=0.94 Score=42.32 Aligned_cols=54 Identities=26% Similarity=0.351 Sum_probs=38.9
Q ss_pred ccccCCCCC-CC-chHHHhhcccceEe-cCCc-----eEEEeeeccc-ccceeEEeccccccc
Q psy9007 54 HKWTSSKPK-KP-ENLKIYESHVGICT-QEQK-----CASYEDFVRV-VIPRIVKQGDFNNWN 107 (132)
Q Consensus 54 Y~f~~~~p~-~p-~~~~IYEaHvg~~~-~~~~-----v~tF~~wApn-alP~V~~lG~nn~W~ 107 (132)
|.|+.++++ .| +...|||+||.-.+ ..++ -++|.-+|.. .++.++.+|.++++.
T Consensus 157 ~~w~~~~~~~~p~~~~vIYE~HVr~fT~~~~~v~~~~rGTy~gl~~~~~i~yLk~LGvtaVeL 219 (697)
T COG1523 157 FDWENDKPPRIPWEDTVIYEAHVRDFTQLHPGVPEELRGTYLGLAEPVIIDYLKDLGVTAVEL 219 (697)
T ss_pred cccccCCCCCCCccceEEEEeeecccccCCCCCchhhccceehhccccHHHHHHHhCCceEEE
Confidence 888888653 24 77789999987554 2222 2789888765 466888899888875
No 51
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=54.11 E-value=19 Score=25.61 Aligned_cols=42 Identities=19% Similarity=0.513 Sum_probs=29.8
Q ss_pred EEEeeecccccc--eeEEecc---cccccc-cccceeeC--CCCeEEEEc
Q psy9007 84 ASYEDFVRVVIP--RIVKQGD---FNNWNR-EEFAYKKL--DFGKWELVL 125 (132)
Q Consensus 84 ~tF~~wApnalP--~V~~lG~---nn~W~~-~~~~m~~~--~~G~We~~i 125 (132)
.+|++-+|...+ .|.++|+ ..+|+. .+.+|... +++.|++.+
T Consensus 3 v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~~W~~~v 52 (120)
T cd05814 3 VTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKEDDDCNLWKASI 52 (120)
T ss_pred EEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCCCcCCccEEEE
Confidence 578777764333 7888998 678984 45788765 568897655
No 52
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=46.65 E-value=38 Score=23.21 Aligned_cols=43 Identities=16% Similarity=0.400 Sum_probs=30.3
Q ss_pred EEEeeecccccc--eeEEeccc---ccccc-cccceeeCCCCeEEEEcC
Q psy9007 84 ASYEDFVRVVIP--RIVKQGDF---NNWNR-EEFAYKKLDFGKWELVLP 126 (132)
Q Consensus 84 ~tF~~wApnalP--~V~~lG~n---n~W~~-~~~~m~~~~~G~We~~ip 126 (132)
.+|++-.|.+.+ .|.++|.. .+|+. .+.+|...+...|++.++
T Consensus 2 v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~ 50 (99)
T cd05816 2 VQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDVGFPIWEADID 50 (99)
T ss_pred EEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCCCCCcEEEEEE
Confidence 568877776433 78888884 58884 457887766788976654
No 53
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=44.38 E-value=43 Score=22.58 Aligned_cols=41 Identities=12% Similarity=0.347 Sum_probs=27.6
Q ss_pred EEEeeecccccc--eeEEecccc---cccc-cccceeeC----CCCeEEEEc
Q psy9007 84 ASYEDFVRVVIP--RIVKQGDFN---NWNR-EEFAYKKL----DFGKWELVL 125 (132)
Q Consensus 84 ~tF~~wApnalP--~V~~lG~nn---~W~~-~~~~m~~~----~~G~We~~i 125 (132)
.+|++ .....| +|.++|... +|++ .+.+|... ....|++.+
T Consensus 4 V~F~v-~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v 54 (96)
T PF00686_consen 4 VTFRV-NYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATV 54 (96)
T ss_dssp EEEEE-SE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEE
T ss_pred EEEEE-EeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEE
Confidence 45666 323333 789999976 7996 56888753 358999987
No 54
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=42.94 E-value=22 Score=23.73 Aligned_cols=31 Identities=16% Similarity=0.464 Sum_probs=23.0
Q ss_pred eeEEecc---cccccc-cccceeeCCCCeEEEEcC
Q psy9007 96 RIVKQGD---FNNWNR-EEFAYKKLDFGKWELVLP 126 (132)
Q Consensus 96 ~V~~lG~---nn~W~~-~~~~m~~~~~G~We~~ip 126 (132)
.|.++|. +.+|++ .+.+|...+.+.|++.+.
T Consensus 16 ~l~v~G~~~~lG~W~~~~a~~l~~~~~~~W~~~v~ 50 (95)
T cd05808 16 NVYVVGNVPELGNWSPANAVALSAATYPVWSGTVD 50 (95)
T ss_pred EEEEEeCcHHhCCCChhhCccCCCCCCCCEEEEEE
Confidence 6788995 679985 357887777789977653
No 55
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=37.97 E-value=24 Score=31.79 Aligned_cols=19 Identities=0% Similarity=-0.055 Sum_probs=16.2
Q ss_pred EEEeeecccccceeEEeccc
Q psy9007 84 ASYEDFVRVVIPRIVKQGDF 103 (132)
Q Consensus 84 ~tF~~wApnalP~V~~lG~n 103 (132)
++|++|||+|. +|.++++.
T Consensus 1 v~FrlwAP~A~-~V~L~l~~ 19 (542)
T TIGR02402 1 VRFRLWAPTAA-SVKLRLNG 19 (542)
T ss_pred CEEEEECCCCC-EEEEEeCC
Confidence 37999999999 99988763
No 56
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=34.69 E-value=67 Score=30.34 Aligned_cols=49 Identities=18% Similarity=0.152 Sum_probs=25.7
Q ss_pred eEEEeeecccccceeEEe-ccccccc--ccccceeeCCCCeEEEEcCCCCCCC
Q psy9007 83 CASYEDFVRVVIPRIVKQ-GDFNNWN--REEFAYKKLDFGKWELVLPPNPDGS 132 (132)
Q Consensus 83 v~tF~~wApnalP~V~~l-G~nn~W~--~~~~~m~~~~~G~We~~ip~~~~G~ 132 (132)
+..|..|+.++. +|.++ -+...-. ...++|......+|.+++|+++.|+
T Consensus 31 g~~f~l~s~~a~-~v~l~l~d~~~~~~~~~~~~~~~~~G~iw~~~~p~~~~g~ 82 (697)
T COG1523 31 GVNFALFSSHAE-RVELCLFDEAGNTEEGRLYPYDGELGAIWHLWLPGAKPGQ 82 (697)
T ss_pred ceEEeeeccccc-eEEEEecCcccccccccccccCCccccEEEEEcCCCceee
Confidence 467777777777 55554 2222111 1114443322347777777776653
No 57
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=32.87 E-value=56 Score=20.21 Aligned_cols=18 Identities=28% Similarity=0.628 Sum_probs=13.8
Q ss_pred eCCCCeEEEEcCCCCCCC
Q psy9007 115 KLDFGKWELVLPPNPDGS 132 (132)
Q Consensus 115 ~~~~G~We~~ip~~~~G~ 132 (132)
....|.|++-+|...+|+
T Consensus 8 ~~~~G~Ws~t~~~~~dG~ 25 (54)
T PF13754_consen 8 VDSDGNWSFTVPALADGT 25 (54)
T ss_pred ECCCCcEEEeCCCCCCcc
Confidence 455699999998877774
No 58
>PF13143 DUF3986: Protein of unknown function (DUF3986)
Probab=27.31 E-value=67 Score=22.71 Aligned_cols=36 Identities=19% Similarity=0.504 Sum_probs=26.2
Q ss_pred eeEEeccccc-ccccccceeeCCCCeEEEEcCCCCCC
Q psy9007 96 RIVKQGDFNN-WNREEFAYKKLDFGKWELVLPPNPDG 131 (132)
Q Consensus 96 ~V~~lG~nn~-W~~~~~~m~~~~~G~We~~ip~~~~G 131 (132)
..-.+||+-. -+-.+.++++.+.++|-+|++....|
T Consensus 7 ~HlHigYyed~~DlEaiayKr~~e~vWdvff~~~~~~ 43 (88)
T PF13143_consen 7 QHLHIGYYEDGYDLEAIAYKRINEDVWDVFFDFYEYG 43 (88)
T ss_pred cEEEeeeecCCcceEEEEEeecCCceEEEEecchhcc
Confidence 3457888643 35667899988789999999865443
No 59
>PF05166 YcgL: YcgL domain; InterPro: IPR007840 This family of proteins formerly called DUF709 includes the Escherichia coli gene ycgL. Homologues of YcgL are found in gammaproteobacteria. The structure of this protein shows a novel alpha/beta/alpha sandwich structure []. The proteins in this entry are functionally uncharacterised.; PDB: 2H7A_A.
Probab=21.48 E-value=33 Score=23.46 Aligned_cols=16 Identities=44% Similarity=0.712 Sum_probs=6.3
Q ss_pred CccccchheeeEEEecCCcceeecCc
Q psy9007 1 MYLYVPQYITRTLIFRYLLPISRLSP 26 (132)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~dRip~ 26 (132)
|||||+. ...++++|.
T Consensus 12 ~YLyv~k----------~ddf~~vPe 27 (74)
T PF05166_consen 12 TYLYVPK----------RDDFSRVPE 27 (74)
T ss_dssp -EEEESS----------SS---SS-H
T ss_pred eEEEEEc----------CCChhhCcH
Confidence 5666654 455666654
Done!