RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy9007
         (132 letters)



>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE;
           1.70A {Oryza sativa japonica group} PDB: 3amk_A
          Length = 755

 Score = 77.4 bits (191), Expect = 7e-18
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%)

Query: 23  RLSPWATYVTEPP-VVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICTQEQ 81
           R+  W  Y T      G  Y+   W+P   +++ +   +P KP+  +IYE+HVG+  +E 
Sbjct: 136 RIPAWIRYATFDASKFGAPYDGVHWDPPACERYVFKHPRPPKPDAPRIYEAHVGMSGEEP 195

Query: 82  KCASYEDFVRVVIPRIVKQG 101
           + ++Y +F   V+PRI    
Sbjct: 196 EVSTYREFADNVLPRIRANN 215



 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 101 GDFNNWNREEFAYKKLDFGKWELVLPP 127
           G+FNNWN  +   +K  FG W + +  
Sbjct: 83  GEFNNWNGAKHKMEKDKFGIWSIKISH 109


>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta
           sandwich, transferase; 2.30A {Escherichia coli} SCOP:
           b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*
          Length = 617

 Score = 32.9 bits (76), Expect = 0.022
 Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 8/38 (21%)

Query: 90  VRVVIPRIVKQGDFNNWNREEFAYKKL-DFGKWELVLP 126
           V VV       G FN W+      +   + G WEL +P
Sbjct: 39  VSVV-------GQFNYWDGRRHPMRLRKESGIWELFIP 69


>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis
           H37RV, mesophilic human pathogen, RV1326C gene, glycosyl
           transferase; 2.33A {Mycobacterium tuberculosis}
          Length = 722

 Score = 32.6 bits (75), Expect = 0.027
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 8/43 (18%)

Query: 90  VRVVIPRIVKQGDFNNWNREEFAYKKL-DFGKWELVLPPNPDG 131
           V ++       G+FN WN  E   + L   G WEL  P  P  
Sbjct: 150 VSLI-------GEFNGWNGHEAPMRVLGPSGVWELFWPDFPCD 185


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 29.1 bits (64), Expect = 0.55
 Identities = 9/64 (14%), Positives = 24/64 (37%), Gaps = 8/64 (12%)

Query: 70  YESHVGICTQEQKCASYEDFVRVVIPRIVKQGDFN---NWNREEFAYKKLDFGKWELVLP 126
           +  H+   T E +   Y+D + V     V   D     +  +   + +++D     +++ 
Sbjct: 3   HHHHMDFETGEHQ-YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEID----HIIMS 57

Query: 127 PNPD 130
            +  
Sbjct: 58  KDAV 61


>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel,
           alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus
           solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A*
           3vgh_A* 3vgg_A* 1eha_A
          Length = 558

 Score = 26.5 bits (59), Expect = 3.2
 Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 18/60 (30%)

Query: 26  PWATYVTEPP-----VVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICTQE 80
           P + Y  E       ++  + E             + +    K E+L IYE HVG  T E
Sbjct: 69  PASRYQPEGVHGPSQIIQESKE-------------FNNETFLKKEDLIIYEIHVGTFTPE 115


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.2 bits (57), Expect = 4.1
 Identities = 20/148 (13%), Positives = 47/148 (31%), Gaps = 57/148 (38%)

Query: 11  RTLIF--RYLLPISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKP---- 64
           R L F  R+L P++  SP+ +++  P          I     ++   + +   + P    
Sbjct: 412 RKLKFSNRFL-PVA--SPFHSHLLVPAS------DLINKDLVKNNVSFNAKDIQIPVYDT 462

Query: 65  ---ENLKIYESHVG------ICTQE---QKCASYE-----DF------------------ 89
               +L++    +       I       +    ++     DF                  
Sbjct: 463 FDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDG 522

Query: 90  --VRVVIPRIVKQGDFNNWNREEFAYKK 115
             VRV++      G  +    +++ +K+
Sbjct: 523 TGVRVIVA-----GTLDINPDDDYGFKQ 545


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.319    0.138    0.454 

Gapped
Lambda     K      H
   0.267   0.0653    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,194,800
Number of extensions: 113619
Number of successful extensions: 233
Number of sequences better than 10.0: 1
Number of HSP's gapped: 232
Number of HSP's successfully gapped: 21
Length of query: 132
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 49
Effective length of database: 4,384,350
Effective search space: 214833150
Effective search space used: 214833150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.0 bits)