RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9007
         (132 letters)



>d1m7xa1 b.1.18.2 (A:117-226) 1,4-alpha-glucan branching enzyme,
           N-terminal domain N {Escherichia coli [TaxId: 562]}
          Length = 110

 Score = 29.9 bits (67), Expect = 0.034
 Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)

Query: 101 GDFNNWNREEFAYKKL-DFGKWELVLPPNPDG 131
           G FN W+      +   + G WEL +P   +G
Sbjct: 38  GQFNYWDGRRHPMRLRKESGIWELFIPGAHNG 69


>d1eh9a3 c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrolase,
          central domain {Archaeon Sulfolobus solfataricus, km1
          [TaxId: 2287]}
          Length = 400

 Score = 26.9 bits (58), Expect = 0.95
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 56 WTSSKPKKPENLKIYESHVGICTQE 80
          + +    K E+L IYE HVG  T E
Sbjct: 1  FNNETFLKKEDLIIYEIHVGTFTPE 25


>d1m7xa3 c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enzyme,
           central domain {Escherichia coli [TaxId: 562]}
          Length = 396

 Score = 25.0 bits (53), Expect = 4.1
 Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 5/54 (9%)

Query: 51  QDKHKWTSSKPKKPENLKIYESHVGICTQ---EQKCASYEDFVRVVIPRIVKQG 101
           Q + +  +++   P  + IYE H+G   +        SY +    ++P     G
Sbjct: 3   QTEERKKANQFDAP--ISIYEVHLGSWRRHTDNNFWLSYRELADQLVPYAKWMG 54


>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase
           subunit beta-1 {Rattus norvegicus [TaxId: 10116]}
          Length = 87

 Score = 22.9 bits (49), Expect = 9.4
 Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 1/28 (3%)

Query: 101 GDFNNWNREEFAYKKLDFGKWELVLPPN 128
           G FNNW++      + +F    L LP  
Sbjct: 19  GSFNNWSKLPMTRSQNNF-VAILDLPEG 45


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.138    0.454 

Gapped
Lambda     K      H
   0.267   0.0595    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 572,116
Number of extensions: 25640
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 7
Length of query: 132
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 56
Effective length of database: 1,364,116
Effective search space: 76390496
Effective search space used: 76390496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.6 bits)