Query psy9008
Match_columns 89
No_of_seqs 120 out of 1035
Neff 4.2
Searched_HMMs 46136
Date Sat Aug 17 01:25:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9008.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9008hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02447 1,4-alpha-glucan-bran 99.8 2.6E-19 5.7E-24 153.5 9.7 71 2-76 92-162 (758)
2 PLN02960 alpha-amylase 99.6 7.3E-16 1.6E-20 134.5 6.7 55 2-56 105-159 (897)
3 cd02854 Glycogen_branching_enz 99.6 2.8E-15 6.1E-20 100.2 7.7 50 24-75 4-53 (99)
4 PRK12568 glycogen branching en 99.5 4.1E-14 8.8E-19 121.4 7.5 63 11-75 121-186 (730)
5 PRK14705 glycogen branching en 99.5 1.9E-13 4.2E-18 122.3 8.2 63 11-75 617-687 (1224)
6 PLN03244 alpha-amylase; Provis 99.4 1.3E-13 2.8E-18 120.1 5.8 67 3-71 109-180 (872)
7 cd02855 Glycogen_branching_enz 99.4 1E-12 2.2E-17 84.7 7.9 64 10-75 3-70 (106)
8 PF02922 CBM_48: Carbohydrate- 99.4 1.9E-13 4.2E-18 85.7 3.9 55 16-72 1-58 (85)
9 PRK14706 glycogen branching en 99.4 6E-13 1.3E-17 112.2 6.4 61 11-73 21-84 (639)
10 PRK12313 glycogen branching en 99.3 2.6E-12 5.7E-17 106.9 7.1 60 12-73 22-84 (633)
11 PRK05402 glycogen branching en 99.3 3.5E-12 7.7E-17 108.0 7.2 63 11-75 114-180 (726)
12 PRK05402 glycogen branching en 99.3 3.7E-12 8.1E-17 107.8 6.5 59 11-75 15-74 (726)
13 COG0296 GlgB 1,4-alpha-glucan 99.3 4.3E-12 9.3E-17 107.8 6.5 61 11-72 20-82 (628)
14 TIGR01515 branching_enzym alph 99.3 9.7E-12 2.1E-16 103.6 7.3 62 12-75 12-77 (613)
15 KOG0470|consensus 99.3 3.3E-12 7.1E-17 110.2 4.6 74 2-77 90-164 (757)
16 cd02861 E_set_proteins_like E 99.0 1.3E-09 2.7E-14 69.4 5.7 34 26-61 3-36 (82)
17 cd02860 Pullulanase_N_term Pul 99.0 1.7E-09 3.7E-14 70.6 6.4 55 17-75 1-59 (100)
18 cd02858 Esterase_N_term Estera 98.9 5.6E-09 1.2E-13 67.3 6.3 45 24-72 5-49 (85)
19 cd02856 Glycogen_debranching_e 98.8 1.3E-08 2.9E-13 66.9 5.6 55 17-75 2-57 (103)
20 cd02853 MTHase_N_term Maltooli 98.7 6E-08 1.3E-12 61.9 6.5 49 18-72 1-49 (85)
21 cd02852 Isoamylase_N_term Isoa 98.6 1.3E-07 2.8E-12 63.4 6.5 56 18-76 1-62 (119)
22 TIGR02104 pulA_typeI pullulana 98.5 1.9E-07 4.1E-12 77.8 6.5 55 16-74 11-69 (605)
23 cd02688 E_set E or "early" set 98.5 4.4E-07 9.4E-12 54.8 6.5 45 26-73 5-49 (83)
24 TIGR02103 pullul_strch alpha-1 98.2 4.4E-06 9.4E-11 73.8 7.1 56 17-75 128-185 (898)
25 TIGR02102 pullulan_Gpos pullul 98.1 9.4E-06 2E-10 73.1 6.9 57 16-74 318-377 (1111)
26 PRK03705 glycogen debranching 98.0 1.7E-05 3.7E-10 67.7 6.3 58 14-75 9-67 (658)
27 cd02859 AMPKbeta_GBD_like AMP- 98.0 2.4E-05 5.1E-10 49.9 5.5 32 27-60 4-35 (79)
28 TIGR02100 glgX_debranch glycog 97.7 7.4E-05 1.6E-09 64.0 6.5 57 15-75 5-64 (688)
29 PRK14510 putative bifunctional 97.4 0.0003 6.4E-09 63.9 5.9 57 15-75 14-73 (1221)
30 TIGR02402 trehalose_TreZ malto 97.4 0.00029 6.3E-09 58.6 5.0 42 27-75 1-42 (542)
31 PLN02877 alpha-amylase/limit d 97.3 0.00043 9.2E-09 62.1 6.1 55 16-75 214-272 (970)
32 COG2908 Uncharacterized protei 83.4 0.73 1.6E-05 35.9 1.7 42 31-74 25-78 (237)
33 cd05814 CBM20_Prei4 Prei4, N-t 83.2 3.6 7.8E-05 27.6 4.9 31 27-57 3-40 (120)
34 cd05808 CBM20_alpha_amylase Al 79.9 5.9 0.00013 24.9 4.8 22 35-56 13-38 (95)
35 PRK12568 glycogen branching en 78.0 2.7 5.9E-05 37.2 3.6 30 13-42 26-55 (730)
36 PRK14705 glycogen branching en 75.1 6.9 0.00015 36.7 5.5 51 13-70 519-569 (1224)
37 cd07379 MPP_239FB Homo sapiens 72.1 1.8 3.9E-05 28.8 0.8 45 31-75 15-62 (135)
38 PF00686 CBM_20: Starch bindin 71.7 14 0.00031 23.4 5.0 31 27-57 4-40 (96)
39 cd07404 MPP_MS158 Microscilla 71.7 3.3 7.1E-05 28.2 2.1 41 33-75 24-67 (166)
40 cd05809 CBM20_beta_amylase Bet 71.3 11 0.00024 24.4 4.4 26 27-52 5-36 (99)
41 PF14529 Exo_endo_phos_2: Endo 67.7 6.2 0.00013 24.7 2.6 11 38-48 32-42 (119)
42 cd07392 MPP_PAE1087 Pyrobaculu 67.5 2 4.4E-05 28.9 0.3 41 34-76 22-65 (188)
43 cd05816 CBM20_DPE2_repeat2 Dis 66.6 29 0.00064 22.3 5.7 30 27-56 2-38 (99)
44 PRK05421 hypothetical protein; 65.0 3.8 8.2E-05 30.7 1.4 12 39-50 185-196 (263)
45 cd07393 MPP_DR1119 Deinococcus 62.2 3.1 6.7E-05 30.5 0.4 39 34-75 40-83 (232)
46 PRK05340 UDP-2,3-diacylglucosa 61.2 7.5 0.00016 28.5 2.3 41 33-75 30-82 (241)
47 PF03423 CBM_25: Carbohydrate 55.6 20 0.00043 23.1 3.4 37 35-73 17-60 (87)
48 TIGR01854 lipid_A_lpxH UDP-2,3 53.8 13 0.00027 27.2 2.5 41 34-76 29-81 (231)
49 cd00841 MPP_YfcE Escherichia c 44.1 23 0.0005 23.6 2.4 36 36-77 25-60 (155)
50 TIGR03395 sphingomy sphingomye 44.1 22 0.00048 27.3 2.6 19 33-51 174-192 (283)
51 COG1523 PulA Type II secretory 42.8 64 0.0014 28.7 5.5 61 15-75 18-81 (697)
52 TIGR03729 acc_ester putative p 41.6 9.8 0.00021 27.7 0.3 39 34-75 31-73 (239)
53 PF00149 Metallophos: Calcineu 41.4 4.4 9.5E-05 24.6 -1.4 45 33-77 29-79 (200)
54 KOG2983|consensus 41.4 40 0.00087 27.6 3.7 30 24-54 228-257 (334)
55 cd07398 MPP_YbbF-LpxH Escheric 40.3 19 0.0004 25.2 1.5 41 34-76 29-82 (217)
56 PF03372 Exo_endo_phos: Endonu 39.1 19 0.00042 23.9 1.4 9 38-46 158-166 (249)
57 cd00838 MPP_superfamily metall 36.3 27 0.00058 21.1 1.6 41 32-74 23-69 (131)
58 PF02736 Myosin_N: Myosin N-te 36.3 14 0.00031 20.9 0.4 17 30-46 3-19 (42)
59 cd07424 MPP_PrpA_PrpB PrpA and 35.5 21 0.00045 25.6 1.1 36 34-74 27-65 (207)
60 cd07400 MPP_YydB Bacillus subt 35.4 7.2 0.00016 25.6 -1.1 39 35-75 35-80 (144)
61 PRK13911 exodeoxyribonuclease 34.9 37 0.00081 25.6 2.5 10 37-46 137-146 (250)
62 cd05813 CBM20_genethonin_1 Gen 34.8 1.2E+02 0.0026 19.1 5.1 29 27-56 3-37 (95)
63 COG1409 Icc Predicted phosphoh 33.1 13 0.00027 26.5 -0.3 44 33-78 31-80 (301)
64 PF14026 DUF4242: Protein of u 32.9 42 0.0009 21.3 2.2 26 14-39 28-60 (77)
65 cd07390 MPP_AQ1575 Aquifex aeo 31.4 29 0.00063 24.0 1.3 43 32-78 39-84 (168)
66 COG3021 Uncharacterized protei 31.1 15 0.00032 29.7 -0.2 15 37-51 223-239 (309)
67 cd01909 betaLS_CarA_N Glutamin 30.6 70 0.0015 23.8 3.3 42 4-46 80-123 (199)
68 PRK11148 cyclic 3',5'-adenosin 30.2 16 0.00036 27.2 -0.1 41 33-75 53-97 (275)
69 cd07384 MPP_Cdc1_like Saccharo 30.1 32 0.00068 24.3 1.4 14 35-48 45-58 (171)
70 cd07391 MPP_PF1019 Pyrococcus 29.3 48 0.001 23.0 2.1 42 34-77 40-89 (172)
71 PRK11439 pphA serine/threonine 28.7 60 0.0013 23.6 2.6 36 34-74 43-81 (218)
72 cd07385 MPP_YkuE_C Bacillus su 27.8 62 0.0013 22.6 2.5 41 35-77 32-77 (223)
73 cd07388 MPP_Tt1561 Thermus the 27.8 26 0.00057 26.3 0.7 40 34-75 30-74 (224)
74 PRK00166 apaH diadenosine tetr 27.5 56 0.0012 25.3 2.4 57 4-75 10-68 (275)
75 PF07065 D123: D123; InterPro 26.4 1E+02 0.0022 24.4 3.7 29 25-54 215-244 (299)
76 COG2845 Uncharacterized protei 26.2 30 0.00065 28.7 0.7 19 27-45 107-125 (354)
77 cd05817 CBM20_DSP Dual-specifi 26.2 1.8E+02 0.004 18.6 5.3 20 37-56 14-37 (100)
78 PF02777 Sod_Fe_C: Iron/mangan 25.5 94 0.002 20.3 2.9 43 4-47 15-57 (106)
79 cd00844 MPP_Dbr1_N Dbr1 RNA la 23.8 79 0.0017 24.3 2.6 41 35-75 28-85 (262)
80 COG3568 ElsH Metal-dependent h 23.1 48 0.001 26.1 1.3 12 38-49 166-183 (259)
81 cd00712 AsnB Glutamine amidotr 22.4 1.1E+02 0.0023 22.0 3.0 43 4-46 96-140 (220)
82 PRK11756 exonuclease III; Prov 22.4 52 0.0011 24.1 1.4 10 38-47 145-154 (268)
83 PLN02316 synthase/transferase 22.1 1.2E+02 0.0026 28.3 3.8 17 35-51 506-522 (1036)
84 PLN02316 synthase/transferase 22.0 1.5E+02 0.0033 27.7 4.4 40 33-73 342-388 (1036)
85 PF04311 DUF459: Protein of un 21.8 49 0.0011 26.8 1.2 19 31-49 32-54 (327)
86 cd07395 MPP_CSTP1 Homo sapiens 21.7 63 0.0014 23.6 1.6 45 32-76 46-99 (262)
87 PF14638 FNIP_C: Folliculin-in 21.3 68 0.0015 24.1 1.8 19 33-51 69-87 (192)
88 cd07425 MPP_Shelphs Shewanella 20.6 46 0.00099 24.3 0.7 66 4-75 7-79 (208)
89 TIGR00633 xth exodeoxyribonucl 20.2 62 0.0014 22.9 1.3 10 38-47 143-152 (255)
No 1
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=99.79 E-value=2.6e-19 Score=153.54 Aligned_cols=71 Identities=25% Similarity=0.394 Sum_probs=64.1
Q ss_pred CCCccHHHHHHHHhhcCCeEecCCcEEEEEEccCCeEEEEEeecCCCCCCCCcceecCceeeeeEEEecCCCCCC
Q psy9008 2 SQPSGIEKFTTSYNKYGIHVQADNSVRCFEWAPSAQQLYLTVYWNEVSKNGERQELESTFLCNAKCFLKDNHIGN 76 (89)
Q Consensus 2 ~~eg~L~~fa~~Y~~~G~H~~~dggv~FrvWAPnA~~V~LiGDFN~W~~~~~~m~~e~~~~~~~~~f~~~~~~~~ 76 (89)
+.+|+|++||++|++||+|... ++++||||||+|++|+|+||||+|++..++|.+...+ .|++|+|+ .+|.
T Consensus 92 ~~~~~l~~f~~~y~~lGa~~~~-~g~~FrvWAP~A~~V~LvGdFN~W~~~~~~M~~~~~G--vWe~~ip~-~~g~ 162 (758)
T PLN02447 92 KNEGGLEAFSRGYEKFGFNRSE-GGITYREWAPGAKAAALIGDFNNWNPNAHWMTKNEFG--VWEIFLPD-ADGS 162 (758)
T ss_pred hcCCCHHHHHHHHHhceeEEec-CCEEEEEECCCCCEEEEEEecCCCCCCccCceeCCCC--EEEEEECC-cccc
Confidence 4689999999999999999886 5699999999999999999999999999999987766 79999998 5443
No 2
>PLN02960 alpha-amylase
Probab=99.61 E-value=7.3e-16 Score=134.46 Aligned_cols=55 Identities=24% Similarity=0.469 Sum_probs=51.2
Q ss_pred CCCccHHHHHHHHhhcCCeEecCCcEEEEEEccCCeEEEEEeecCCCCCCCCcce
Q psy9008 2 SQPSGIEKFTTSYNKYGIHVQADNSVRCFEWAPSAQQLYLTVYWNEVSKNGERQE 56 (89)
Q Consensus 2 ~~eg~L~~fa~~Y~~~G~H~~~dggv~FrvWAPnA~~V~LiGDFN~W~~~~~~m~ 56 (89)
+.+++|+.||++|++||+|++...++.|+||||+|+.++||||||+|+++.+++.
T Consensus 105 ~~~~~~~~~~~~~e~~g~~~~~~~~~~~~~wap~a~~~~~~gdfn~w~~~~~~~~ 159 (897)
T PLN02960 105 KRHIDLKEFASGFELLGMHRHPEHRVDFMEWAPGARYCSLVGDFNNWSPTENRAR 159 (897)
T ss_pred HhhccHHHHhhHHHHhccccCcccCeEEEEEcCCceeEEEeecccCCCcccchhh
Confidence 4578999999999999999998667999999999999999999999999999876
No 3
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=99.61 E-value=2.8e-15 Score=100.23 Aligned_cols=50 Identities=26% Similarity=0.353 Sum_probs=44.3
Q ss_pred CCcEEEEEEccCCeEEEEEeecCCCCCCCCcceecCceeeeeEEEecCCCCC
Q psy9008 24 DNSVRCFEWAPSAQQLYLTVYWNEVSKNGERQELESTFLCNAKCFLKDNHIG 75 (89)
Q Consensus 24 dggv~FrvWAPnA~~V~LiGDFN~W~~~~~~m~~e~~~~~~~~~f~~~~~~~ 75 (89)
+++++||+|||+|++|+|+||||+|++..++|.+...+ .+++++++..+|
T Consensus 4 ~~g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~~~G--~W~~~i~~~~~~ 53 (99)
T cd02854 4 DGGVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKDEFG--VWEITIPPNEDG 53 (99)
T ss_pred CCeEEEEEECCCCCEEEEEccCCCCCCcCcccEECCCC--EEEEEECCcccc
Confidence 46799999999999999999999999988999998766 799999986533
No 4
>PRK12568 glycogen branching enzyme; Provisional
Probab=99.50 E-value=4.1e-14 Score=121.42 Aligned_cols=63 Identities=19% Similarity=0.146 Sum_probs=54.0
Q ss_pred HHHHhhcCCeEec-C--CcEEEEEEccCCeEEEEEeecCCCCCCCCcceecCceeeeeEEEecCCCCC
Q psy9008 11 TTSYNKYGIHVQA-D--NSVRCFEWAPSAQQLYLTVYWNEVSKNGERQELESTFLCNAKCFLKDNHIG 75 (89)
Q Consensus 11 a~~Y~~~G~H~~~-d--ggv~FrvWAPnA~~V~LiGDFN~W~~~~~~m~~e~~~~~~~~~f~~~~~~~ 75 (89)
.++|+.||||... + .+++|++|||+|++|+|+||||+|+...++|.+...+ +|++|+|+...|
T Consensus 121 ~~~y~~lGah~~~~~g~~Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~~~G--VWelfipg~~~G 186 (730)
T PRK12568 121 QALRRALGAQHVQVGEVPGVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQRIGG--FWELFLPRVEAG 186 (730)
T ss_pred hhhHHhcCCeEeeECCCCcEEEEEECCCCCEEEEEEecCCCCccceecccCCCC--EEEEEECCCCCC
Confidence 3689999999875 2 3799999999999999999999999888999877555 699999986543
No 5
>PRK14705 glycogen branching enzyme; Provisional
Probab=99.45 E-value=1.9e-13 Score=122.26 Aligned_cols=63 Identities=22% Similarity=0.264 Sum_probs=53.0
Q ss_pred HHHHhhcCCeEec-C------CcEEEEEEccCCeEEEEEeecCCCCCCCCccee-cCceeeeeEEEecCCCCC
Q psy9008 11 TTSYNKYGIHVQA-D------NSVRCFEWAPSAQQLYLTVYWNEVSKNGERQEL-ESTFLCNAKCFLKDNHIG 75 (89)
Q Consensus 11 a~~Y~~~G~H~~~-d------ggv~FrvWAPnA~~V~LiGDFN~W~~~~~~m~~-e~~~~~~~~~f~~~~~~~ 75 (89)
.++|++||||... + .+++|+||||+|++|+|+||||+|+...++|.+ +..+ +|++|+|+...|
T Consensus 617 ~~~y~~lGah~~~~~~~~~~~~Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~~~~G--vW~~fipg~~~G 687 (1224)
T PRK14705 617 EKLWDVLGAHVQHYKSSLGDVDGVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSLGSSG--VWELFIPGVVAG 687 (1224)
T ss_pred hhHHHhcCCeEeeccCccCCCCeEEEEEECCCCCEEEEEEEecCCCCCcccceECCCCC--EEEEEECCCCCC
Confidence 3689999999864 1 279999999999999999999999988899987 3445 689999986654
No 6
>PLN03244 alpha-amylase; Provisional
Probab=99.43 E-value=1.3e-13 Score=120.06 Aligned_cols=67 Identities=18% Similarity=0.277 Sum_probs=55.6
Q ss_pred CCccHHHHHHHHhhcCCeEecCCcEEEEEEccCCeEEEEEeecCCCCCCCCc-----ceecCceeeeeEEEecC
Q psy9008 3 QPSGIEKFTTSYNKYGIHVQADNSVRCFEWAPSAQQLYLTVYWNEVSKNGER-----QELESTFLCNAKCFLKD 71 (89)
Q Consensus 3 ~eg~L~~fa~~Y~~~G~H~~~dggv~FrvWAPnA~~V~LiGDFN~W~~~~~~-----m~~e~~~~~~~~~f~~~ 71 (89)
.+++|+.||++|++||+|+....++.|++|||+|+-.+||||||+|+++.+. |-++.++ -|..+|+|
T Consensus 109 ~~~~~~~~~~~~e~~g~~r~~~~~~~~~ewapga~~~~~~gdfn~w~~~~~~~r~~~~~~~~~g--~~~~~~~~ 180 (872)
T PLN03244 109 RHFDFQDFASGFEILGMHRHMEHRVDFMDWAPGARYCAIIGDFNGWSPTENAAREGHFGHDDYG--YWFIILED 180 (872)
T ss_pred hhccHHHhhhhhhhhccccCcccCceeEeecCCcceeeeeccccCCCccccccccccccccccc--eEEEEech
Confidence 4678999999999999999987789999999999999999999999998775 4454443 34455554
No 7
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=99.42 E-value=1e-12 Score=84.72 Aligned_cols=64 Identities=20% Similarity=0.242 Sum_probs=51.5
Q ss_pred HHHHHhhcCCeEecC---CcEEEEEEccCCeEEEEEeecCCCCCCCCcceecC-ceeeeeEEEecCCCCC
Q psy9008 10 FTTSYNKYGIHVQAD---NSVRCFEWAPSAQQLYLTVYWNEVSKNGERQELES-TFLCNAKCFLKDNHIG 75 (89)
Q Consensus 10 fa~~Y~~~G~H~~~d---ggv~FrvWAPnA~~V~LiGDFN~W~~~~~~m~~e~-~~~~~~~~f~~~~~~~ 75 (89)
+++-|+.||+|...+ ++++||+|||+|++|.|++|||+|+....+|.+.. .+ .+.+++++...|
T Consensus 3 ~~~p~~~lG~~~~~~~~~~~~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~~~~G--~w~~~v~~~~~~ 70 (106)
T cd02855 3 HERLYEKLGAHPTEVDGVSGVRFAVWAPNARRVSVVGDFNGWDGRRHPMRRRGDSG--VWELFIPGLGEG 70 (106)
T ss_pred chhHHHhcCCEEcccCCcCCEEEEEECCCCCEEEEEEECCCCCCcceecEECCCCC--EEEEEECCCCCC
Confidence 467889999998764 67999999999999999999999987667888754 44 477888765433
No 8
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=99.41 E-value=1.9e-13 Score=85.66 Aligned_cols=55 Identities=20% Similarity=0.285 Sum_probs=46.8
Q ss_pred hcCCeEecC-CcEEEEEEccCCeEEEEEeecCC-CCCCCCcce-ecCceeeeeEEEecCC
Q psy9008 16 KYGIHVQAD-NSVRCFEWAPSAQQLYLTVYWNE-VSKNGERQE-LESTFLCNAKCFLKDN 72 (89)
Q Consensus 16 ~~G~H~~~d-ggv~FrvWAPnA~~V~LiGDFN~-W~~~~~~m~-~e~~~~~~~~~f~~~~ 72 (89)
.||+|+.++ ++++||+|||+|++|.|+++|++ |.....+|. ++..+ .|++.++++
T Consensus 1 plG~~~~~~~~~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~~~~G--~w~~~~~~~ 58 (85)
T PF02922_consen 1 PLGAHYTEDGGGVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRKDDDG--VWEVTVPGD 58 (85)
T ss_dssp SSEEEEESSCTEEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEECTTT--EEEEEEEGC
T ss_pred CcCcEEECCCCEEEEEEECCCCCEEEEEEEeeecCCCceEEeeecCCCC--EEEEEEcCC
Confidence 389999986 78999999999999999999999 988889999 45565 588999963
No 9
>PRK14706 glycogen branching enzyme; Provisional
Probab=99.38 E-value=6e-13 Score=112.20 Aligned_cols=61 Identities=18% Similarity=0.187 Sum_probs=52.6
Q ss_pred HHHHhhcCCeEecC-C--cEEEEEEccCCeEEEEEeecCCCCCCCCcceecCceeeeeEEEecCCC
Q psy9008 11 TTSYNKYGIHVQAD-N--SVRCFEWAPSAQQLYLTVYWNEVSKNGERQELESTFLCNAKCFLKDNH 73 (89)
Q Consensus 11 a~~Y~~~G~H~~~d-g--gv~FrvWAPnA~~V~LiGDFN~W~~~~~~m~~e~~~~~~~~~f~~~~~ 73 (89)
.+.|+.||+|...+ + +++||+|||+|++|+|+||||+|++.+++|.+...+ .+++|+|+-.
T Consensus 21 ~~~~~~lGah~~~~~~~~Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~~~G--vW~~~vpg~~ 84 (639)
T PRK14706 21 VRPDHLLGAHPATEGGVEGVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRLDFG--FWGAFVPGAR 84 (639)
T ss_pred cchhHhcCccCccCCCcccEEEEEECCCCCEEEEEEecCCcccccccccccCCC--EEEEEECCCC
Confidence 45899999998763 2 699999999999999999999999888899876555 6899999764
No 10
>PRK12313 glycogen branching enzyme; Provisional
Probab=99.33 E-value=2.6e-12 Score=106.89 Aligned_cols=60 Identities=18% Similarity=0.232 Sum_probs=51.7
Q ss_pred HHHhhcCCeEecCC---cEEEEEEccCCeEEEEEeecCCCCCCCCcceecCceeeeeEEEecCCC
Q psy9008 12 TSYNKYGIHVQADN---SVRCFEWAPSAQQLYLTVYWNEVSKNGERQELESTFLCNAKCFLKDNH 73 (89)
Q Consensus 12 ~~Y~~~G~H~~~dg---gv~FrvWAPnA~~V~LiGDFN~W~~~~~~m~~e~~~~~~~~~f~~~~~ 73 (89)
+.|+.||+|...++ +++||+|||+|++|+|+||||+|++..++|.+...+ .+++++++-.
T Consensus 22 ~~~~~lGah~~~~~~~~gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~~~G--vw~~~i~~~~ 84 (633)
T PRK12313 22 RLYEYLGAHLEEVDGEKGTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRRESG--VWEGFIPGAK 84 (633)
T ss_pred cchhcCCcEEeccCCcccEEEEEECCCCCEEEEEEecCCCCcccccccccCCC--EEEEEeCCCC
Confidence 35999999998653 799999999999999999999999888999887555 5889998643
No 11
>PRK05402 glycogen branching enzyme; Provisional
Probab=99.32 E-value=3.5e-12 Score=107.96 Aligned_cols=63 Identities=21% Similarity=0.251 Sum_probs=53.0
Q ss_pred HHHHhhcCCeEec---CCcEEEEEEccCCeEEEEEeecCCCCCCCCcceec-CceeeeeEEEecCCCCC
Q psy9008 11 TTSYNKYGIHVQA---DNSVRCFEWAPSAQQLYLTVYWNEVSKNGERQELE-STFLCNAKCFLKDNHIG 75 (89)
Q Consensus 11 a~~Y~~~G~H~~~---dggv~FrvWAPnA~~V~LiGDFN~W~~~~~~m~~e-~~~~~~~~~f~~~~~~~ 75 (89)
.+.|+.||+|+.. .++++||+|||+|++|+|+||||+|++...+|.+. ..+ .+++++++-..|
T Consensus 114 ~~~~~~LGah~~~~~~~~gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~~~~G--vw~~~i~~~~~g 180 (726)
T PRK05402 114 LRLYETLGAHPVTVDGVSGVRFAVWAPNARRVSVVGDFNGWDGRRHPMRLRGESG--VWELFIPGLGEG 180 (726)
T ss_pred chhhhccccEEeccCCCCcEEEEEECCCCCEEEEEEEcCCCCCccccceEcCCCC--EEEEEeCCCCCC
Confidence 4579999999885 35799999999999999999999999888899987 444 588899975433
No 12
>PRK05402 glycogen branching enzyme; Provisional
Probab=99.30 E-value=3.7e-12 Score=107.83 Aligned_cols=59 Identities=10% Similarity=0.032 Sum_probs=48.7
Q ss_pred HHHHhhcCCeEecCCcEEEEEEccCCeEEEEEeecCCCCCCCCcceec-CceeeeeEEEecCCCCC
Q psy9008 11 TTSYNKYGIHVQADNSVRCFEWAPSAQQLYLTVYWNEVSKNGERQELE-STFLCNAKCFLKDNHIG 75 (89)
Q Consensus 11 a~~Y~~~G~H~~~dggv~FrvWAPnA~~V~LiGDFN~W~~~~~~m~~e-~~~~~~~~~f~~~~~~~ 75 (89)
.++|+.||+|.... |++|++|||||++|+||||||+ +..++|++- ..+ +|++|+| -..|
T Consensus 15 ~~~~~~lGah~~~~-g~~f~vwaP~A~~V~vvgdfn~--~~~~~m~~~~~~G--~w~~~ip-~~~g 74 (726)
T PRK05402 15 HDPFSVLGPHPTGA-GLVVRALLPGAEEVWVILPGGG--RKLAELERLHPRG--LFAGVLP-RKGP 74 (726)
T ss_pred CCHHHhcCCCCCCC-cEEEEEECCCCeEEEEEeecCC--CccccceEcCCCc--eEEEEec-CCCC
Confidence 46899999999865 6999999999999999999995 677888863 334 4899999 5444
No 13
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=99.30 E-value=4.3e-12 Score=107.81 Aligned_cols=61 Identities=21% Similarity=0.237 Sum_probs=52.0
Q ss_pred HHHHhhcCCeEecCC--cEEEEEEccCCeEEEEEeecCCCCCCCCcceecCceeeeeEEEecCC
Q psy9008 11 TTSYNKYGIHVQADN--SVRCFEWAPSAQQLYLTVYWNEVSKNGERQELESTFLCNAKCFLKDN 72 (89)
Q Consensus 11 a~~Y~~~G~H~~~dg--gv~FrvWAPnA~~V~LiGDFN~W~~~~~~m~~e~~~~~~~~~f~~~~ 72 (89)
.+.|+.||+|..+.| +++|++|||+|+.|+|+||||+|+...++|.....+. +++.|+|+=
T Consensus 20 ~~~~~~~GA~~~~~g~~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~~~~G-~we~~vp~~ 82 (628)
T COG0296 20 LRLYEKLGAHPIENGVSGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDRKESG-IWELFVPGA 82 (628)
T ss_pred hhhHhhhCcccccCCCCceEEEEECCCCCeEEEEeecCCccceecccccCCCCc-eEEEeccCC
Confidence 468999999998755 6999999999999999999999999999888663332 588999973
No 14
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=99.27 E-value=9.7e-12 Score=103.61 Aligned_cols=62 Identities=21% Similarity=0.260 Sum_probs=52.0
Q ss_pred HHHhhcCCeEec-C--CcEEEEEEccCCeEEEEEeecCCCCCCCCcceecC-ceeeeeEEEecCCCCC
Q psy9008 12 TSYNKYGIHVQA-D--NSVRCFEWAPSAQQLYLTVYWNEVSKNGERQELES-TFLCNAKCFLKDNHIG 75 (89)
Q Consensus 12 ~~Y~~~G~H~~~-d--ggv~FrvWAPnA~~V~LiGDFN~W~~~~~~m~~e~-~~~~~~~~f~~~~~~~ 75 (89)
+.|+.||+|... + .+++||+|||+|++|+|+||||+|+....+|.+.. .+ .+++++++...|
T Consensus 12 ~~~~~LGah~~~~~~~~g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~~~~G--vw~~~i~~~~~g 77 (613)
T TIGR01515 12 RSYELLGSHYMELDGVSGTRFCVWAPNAREVRVAGDFNYWDGREHPMRRRNDNG--IWELFIPGIGEG 77 (613)
T ss_pred ChHHhcCceEeccCCcCcEEEEEECCCCCEEEEEEecCCCCCceecceEecCCC--EEEEEeCCCCCC
Confidence 479999999986 2 36999999999999999999999998888998764 44 488899986544
No 15
>KOG0470|consensus
Probab=99.27 E-value=3.3e-12 Score=110.17 Aligned_cols=74 Identities=23% Similarity=0.333 Sum_probs=64.5
Q ss_pred CCCccHHHHHHHHhhcCCeEecCCcEEEEEEccCCeEEEEEeecCCCCCCCCcce-ecCceeeeeEEEecCCCCCCC
Q psy9008 2 SQPSGIEKFTTSYNKYGIHVQADNSVRCFEWAPSAQQLYLTVYWNEVSKNGERQE-LESTFLCNAKCFLKDNHIGNG 77 (89)
Q Consensus 2 ~~eg~L~~fa~~Y~~~G~H~~~dggv~FrvWAPnA~~V~LiGDFN~W~~~~~~m~-~e~~~~~~~~~f~~~~~~~~~ 77 (89)
+++++|+.|++.|+.||+|+..++++.|++|||.|++|+++||||+|+...+.+. ++-.+ .|..++|.+.+|.+
T Consensus 90 ~~~~~l~~~~~~y~~~g~h~~~d~~v~~~ewaP~a~~~s~~gd~n~W~~~~~~~~~k~~~g--~w~i~l~~~~~~s~ 164 (757)
T KOG0470|consen 90 KSEGGLSAFSRGYEPLGTHRTPDGRVDFTEWAPLAEAVSLIGDFNNWNPSSNELKPKDDLG--VWEIDLPPKVNGSG 164 (757)
T ss_pred hccCChhhhhccccccceeccCCCceeeeeecccccccccccccCCCCCcccccCcccccc--eeEEecCcccCCCc
Confidence 3568999999999999999998888999999999999999999999999988876 66655 68889988766554
No 16
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.99 E-value=1.3e-09 Score=69.39 Aligned_cols=34 Identities=24% Similarity=0.177 Sum_probs=28.8
Q ss_pred cEEEEEEccCCeEEEEEeecCCCCCCCCcceecCce
Q psy9008 26 SVRCFEWAPSAQQLYLTVYWNEVSKNGERQELESTF 61 (89)
Q Consensus 26 gv~FrvWAPnA~~V~LiGDFN~W~~~~~~m~~e~~~ 61 (89)
.++|+.|||+|++|+|+||||+|+ ..+|.+.+.+
T Consensus 3 ~vtf~~~ap~a~~V~v~G~fn~W~--~~~m~~~~~G 36 (82)
T cd02861 3 PVVFAYRGPEADSVYLAGSFNNWN--AIPMEREGDG 36 (82)
T ss_pred cEEEEEECCCCCEEEEEeECCCCC--cccCEECCCC
Confidence 589999999999999999999998 4577765433
No 17
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.98 E-value=1.7e-09 Score=70.58 Aligned_cols=55 Identities=16% Similarity=0.195 Sum_probs=43.7
Q ss_pred cCCeEecCCcEEEEEEccCCeEEEEEeecCCCCC----CCCcceecCceeeeeEEEecCCCCC
Q psy9008 17 YGIHVQADNSVRCFEWAPSAQQLYLTVYWNEVSK----NGERQELESTFLCNAKCFLKDNHIG 75 (89)
Q Consensus 17 ~G~H~~~dggv~FrvWAPnA~~V~LiGDFN~W~~----~~~~m~~e~~~~~~~~~f~~~~~~~ 75 (89)
||+|... ++++|++|||+|++|.|+. |++|+. ...+|.+...+ .|++++++...|
T Consensus 1 lGa~~~~-~~~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~~~~g--vw~~~v~~~~~g 59 (100)
T cd02860 1 LGAVYTP-EKTTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKRGENG--VWSVTLDGDLEG 59 (100)
T ss_pred CCCEEeC-CCEEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeecCCCC--EEEEEeCCccCC
Confidence 6999876 4599999999999999998 888862 24578875545 589999987554
No 18
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.90 E-value=5.6e-09 Score=67.32 Aligned_cols=45 Identities=13% Similarity=0.100 Sum_probs=35.9
Q ss_pred CCcEEEEEEccCCeEEEEEeecCCCCCCCCcceecCceeeeeEEEecCC
Q psy9008 24 DNSVRCFEWAPSAQQLYLTVYWNEVSKNGERQELESTFLCNAKCFLKDN 72 (89)
Q Consensus 24 dggv~FrvWAPnA~~V~LiGDFN~W~~~~~~m~~e~~~~~~~~~f~~~~ 72 (89)
+++++|++|||.|++|.|+|+||+|. ..+|.++..+ .|++.+++-
T Consensus 5 ~~~v~F~vwAP~A~~V~L~~~~~~~~--~~~m~~~~~G--~W~~~v~~l 49 (85)
T cd02858 5 DRTVTFRLFAPKANEVQVRGSWGGAG--SHPMTKDEAG--VWSVTTGPL 49 (85)
T ss_pred CCcEEEEEECCCCCEEEEEeecCCCc--cEeCeECCCe--EEEEEECCC
Confidence 45799999999999999999999775 4677776655 567777543
No 19
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.79 E-value=1.3e-08 Score=66.92 Aligned_cols=55 Identities=15% Similarity=0.105 Sum_probs=41.9
Q ss_pred cCCeEecCCcEEEEEEccCCeEEEEEeecCCCC-CCCCcceecCceeeeeEEEecCCCCC
Q psy9008 17 YGIHVQADNSVRCFEWAPSAQQLYLTVYWNEVS-KNGERQELESTFLCNAKCFLKDNHIG 75 (89)
Q Consensus 17 ~G~H~~~dggv~FrvWAPnA~~V~LiGDFN~W~-~~~~~m~~e~~~~~~~~~f~~~~~~~ 75 (89)
||++..+ ++++|++|||+|++|.|+. |+++. ....+|+++..+ .+++.+++...|
T Consensus 2 lGa~~~~-~g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~~G--vW~~~v~~~~~g 57 (103)
T cd02856 2 LGATLDG-EGCNFAVHSENATRIELCL-FDEDGSETRLPLTEEYGG--VWHGFLPGIKAG 57 (103)
T ss_pred CccEEeC-CCeEEEEECCCCCEEEEEE-EeCCCCEEEEEcccccCC--EEEEEECCCCCC
Confidence 7999874 4599999999999999998 66665 344578766444 588888876543
No 20
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.71 E-value=6e-08 Score=61.87 Aligned_cols=49 Identities=14% Similarity=0.079 Sum_probs=38.2
Q ss_pred CCeEecCCcEEEEEEccCCeEEEEEeecCCCCCCCCcceecCceeeeeEEEecCC
Q psy9008 18 GIHVQADNSVRCFEWAPSAQQLYLTVYWNEVSKNGERQELESTFLCNAKCFLKDN 72 (89)
Q Consensus 18 G~H~~~dggv~FrvWAPnA~~V~LiGDFN~W~~~~~~m~~e~~~~~~~~~f~~~~ 72 (89)
|++...+++++|++|||+|++|.|+... |. ..+|.++..+ .|++++++.
T Consensus 1 Ga~~~~~~~~~F~vwAP~A~~V~l~l~~--~~--~~~m~~~~~G--~W~~~v~~~ 49 (85)
T cd02853 1 GARPLGAGGTRFRLWAPDAKRVTLRLDD--GE--EIPMQRDGDG--WFEAEVPGA 49 (85)
T ss_pred CCeEcCCCCEEEEEeCCCCCEEEEEecC--CC--cccCccCCCc--EEEEEeCCC
Confidence 6777765679999999999999999743 43 4677766655 688999976
No 21
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.63 E-value=1.3e-07 Score=63.37 Aligned_cols=56 Identities=13% Similarity=0.122 Sum_probs=40.6
Q ss_pred CCeEecCCcEEEEEEccCCeEEEEEeecCCCCCC----CCcceecCc--eeeeeEEEecCCCCCC
Q psy9008 18 GIHVQADNSVRCFEWAPSAQQLYLTVYWNEVSKN----GERQELEST--FLCNAKCFLKDNHIGN 76 (89)
Q Consensus 18 G~H~~~dggv~FrvWAPnA~~V~LiGDFN~W~~~----~~~m~~e~~--~~~~~~~f~~~~~~~~ 76 (89)
|++... ++++|++|||+|++|.|+. |++|+.. ..+|.++.. .. .|++++++...|.
T Consensus 1 Ga~~~~-~g~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~~~~~g-vW~~~v~~~~~g~ 62 (119)
T cd02852 1 GATIDA-GGVNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSVNRTGD-VWHVFVEGLKPGQ 62 (119)
T ss_pred CCeEeC-CCEEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcccccCC-EEEEEECCCCCCC
Confidence 677765 4599999999999999998 8988621 235654331 22 4888999877653
No 22
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=98.54 E-value=1.9e-07 Score=77.84 Aligned_cols=55 Identities=13% Similarity=0.147 Sum_probs=44.2
Q ss_pred hcCCeEecCCcEEEEEEccCCeEEEEEeecCCCCCC----CCcceecCceeeeeEEEecCCCC
Q psy9008 16 KYGIHVQADNSVRCFEWAPSAQQLYLTVYWNEVSKN----GERQELESTFLCNAKCFLKDNHI 74 (89)
Q Consensus 16 ~~G~H~~~dggv~FrvWAPnA~~V~LiGDFN~W~~~----~~~m~~e~~~~~~~~~f~~~~~~ 74 (89)
.||+|...+ +++|++|||+|++|+|++ |++|+.. ..+|.++..+ .|++++++...
T Consensus 11 ~lG~~~~~~-~~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~~~g--vw~~~i~~~~~ 69 (605)
T TIGR02104 11 ELGAVYTPE-KTVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRGENG--VWSAVLEGDLH 69 (605)
T ss_pred CCccEEECC-eeEEEEECCCCCEEEEEE-EcCCCCCccceEEecccCCCC--EEEEEECCCCC
Confidence 699999765 499999999999999997 8998643 4578776655 68999997543
No 23
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.53 E-value=4.4e-07 Score=54.80 Aligned_cols=45 Identities=16% Similarity=-0.074 Sum_probs=36.4
Q ss_pred cEEEEEEccCCeEEEEEeecCCCCCCCCcceecCceeeeeEEEecCCC
Q psy9008 26 SVRCFEWAPSAQQLYLTVYWNEVSKNGERQELESTFLCNAKCFLKDNH 73 (89)
Q Consensus 26 gv~FrvWAPnA~~V~LiGDFN~W~~~~~~m~~e~~~~~~~~~f~~~~~ 73 (89)
+++|++|||+|++|.|+++|++|. ...+|.+...+ .+++.++...
T Consensus 5 ~v~f~v~ap~a~~v~l~~~~~~~~-~~~~~~~~~~g--~w~~~v~~~~ 49 (83)
T cd02688 5 GVTFTVRGPKAQRVSLAGSFNGDT-QLIPMTKVEDG--YWEVELPLPS 49 (83)
T ss_pred cEEEEEECCCCCEEEEEEEECCCC-CcccCEECCCc--eEEEEEcCCC
Confidence 599999999999999999999853 45778776554 5777887765
No 24
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=98.19 E-value=4.4e-06 Score=73.84 Aligned_cols=56 Identities=20% Similarity=0.193 Sum_probs=43.8
Q ss_pred cCCeEecCCcEEEEEEccCCeEEEEEeecCCCC-CCCCcceec-CceeeeeEEEecCCCCC
Q psy9008 17 YGIHVQADNSVRCFEWAPSAQQLYLTVYWNEVS-KNGERQELE-STFLCNAKCFLKDNHIG 75 (89)
Q Consensus 17 ~G~H~~~dggv~FrvWAPnA~~V~LiGDFN~W~-~~~~~m~~e-~~~~~~~~~f~~~~~~~ 75 (89)
||+|... ++++|++|||+|++|.|+...++|+ ...++|.++ ..+ .|++++++.-.|
T Consensus 128 LGa~~~~-~gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~~~~G--VWsv~v~g~~~G 185 (898)
T TIGR02103 128 LGATLTD-SGVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRDSTSG--VWSAEGGSSWKG 185 (898)
T ss_pred CCcEEeC-CcEEEEEECCCCCEEEEEEEcCCCCccceEeCccCCCCC--EEEEEECcCCCC
Confidence 8999875 4699999999999999998777764 446678876 344 689999865433
No 25
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=98.07 E-value=9.4e-06 Score=73.09 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=45.4
Q ss_pred hcCCeEecCCcEEEEEEccCCeEEEEEe-ecCCCCC--CCCcceecCceeeeeEEEecCCCC
Q psy9008 16 KYGIHVQADNSVRCFEWAPSAQQLYLTV-YWNEVSK--NGERQELESTFLCNAKCFLKDNHI 74 (89)
Q Consensus 16 ~~G~H~~~dggv~FrvWAPnA~~V~LiG-DFN~W~~--~~~~m~~e~~~~~~~~~f~~~~~~ 74 (89)
.||++...++.++|++|||+|++|.|+. |+++|+. ...+|.+...+ .|++++++...
T Consensus 318 ~LGa~~~~~g~v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~~~G--vW~v~v~~~~~ 377 (1111)
T TIGR02102 318 KLGAQLHEDGTVTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKGDRG--VWEVQLTKENT 377 (1111)
T ss_pred CCCCEEecCCCEEEEEECCCCCEEEEEEEeCCCCCCceeeEecccCCCC--EEEEEECCccc
Confidence 4999998766689999999999999997 7777864 25678876655 68999996543
No 26
>PRK03705 glycogen debranching enzyme; Provisional
Probab=97.97 E-value=1.7e-05 Score=67.74 Aligned_cols=58 Identities=17% Similarity=0.168 Sum_probs=43.4
Q ss_pred HhhcCCeEecCCcEEEEEEccCCeEEEEEeecCCCC-CCCCcceecCceeeeeEEEecCCCCC
Q psy9008 14 YNKYGIHVQADNSVRCFEWAPSAQQLYLTVYWNEVS-KNGERQELESTFLCNAKCFLKDNHIG 75 (89)
Q Consensus 14 Y~~~G~H~~~dggv~FrvWAPnA~~V~LiGDFN~W~-~~~~~m~~e~~~~~~~~~f~~~~~~~ 75 (89)
...||++...+ ++.|++|||+|++|.|+- |+++. ....+|.+..-+ .|++||++...|
T Consensus 9 ~~pLGa~~~~~-g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~~g--vW~~~v~~~~~G 67 (658)
T PRK03705 9 PTPLGAHYDGQ-GVNFTLFSAHAERVELCV-FDENGQEQRYDLPARSGD--IWHGYLPGARPG 67 (658)
T ss_pred CCCcceEEeCC-CEEEEEECCCCCEEEEEE-EcCCCCeeeEeeeeccCC--EEEEEECCCCCC
Confidence 34589999764 599999999999999986 67653 334567655433 589999987654
No 27
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=97.97 E-value=2.4e-05 Score=49.94 Aligned_cols=32 Identities=13% Similarity=0.069 Sum_probs=26.8
Q ss_pred EEEEEEccCCeEEEEEeecCCCCCCCCcceecCc
Q psy9008 27 VRCFEWAPSAQQLYLTVYWNEVSKNGERQELEST 60 (89)
Q Consensus 27 v~FrvWAPnA~~V~LiGDFN~W~~~~~~m~~e~~ 60 (89)
++|+-.+ .|++|+|+||||+|++ ..||.+.+.
T Consensus 4 v~f~~~~-~a~~V~v~G~F~~W~~-~~pm~~~~~ 35 (79)
T cd02859 4 TTFVWPG-GGKEVYVTGSFDNWKK-KIPLEKSGK 35 (79)
T ss_pred EEEEEcC-CCcEEEEEEEcCCCCc-cccceECCC
Confidence 7888877 8999999999999987 577876544
No 28
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=97.75 E-value=7.4e-05 Score=64.04 Aligned_cols=57 Identities=11% Similarity=0.084 Sum_probs=42.0
Q ss_pred hhcCCeEecCCcEEEEEEccCCeEEEEEeecCCCCCC---CCcceecCceeeeeEEEecCCCCC
Q psy9008 15 NKYGIHVQADNSVRCFEWAPSAQQLYLTVYWNEVSKN---GERQELESTFLCNAKCFLKDNHIG 75 (89)
Q Consensus 15 ~~~G~H~~~dggv~FrvWAPnA~~V~LiGDFN~W~~~---~~~m~~e~~~~~~~~~f~~~~~~~ 75 (89)
..||++...+ ++.|++|||+|++|.|+ -|++++.. ..+|.+...+ +|++++++.-.|
T Consensus 5 ~~LGa~~~~~-g~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~~~~g--vW~~~v~~~~~g 64 (688)
T TIGR02100 5 FPLGATWDGQ-GVNFALFSANAEKVELC-LFDAQGEKEEARLPLPERTDD--IWHGYLPGAQPG 64 (688)
T ss_pred cCCCeEEeCC-cEEEEEECCCCCEEEEE-EEcCCCCceeeEEecccCCCC--EEEEEECCCCCC
Confidence 3489999764 59999999999999986 56666532 3467665544 688999876544
No 29
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=97.41 E-value=0.0003 Score=63.86 Aligned_cols=57 Identities=11% Similarity=-0.004 Sum_probs=42.4
Q ss_pred hhcCCeEecCCcEEEEEEccCCeEEEEEeecCCCCCCC---CcceecCceeeeeEEEecCCCCC
Q psy9008 15 NKYGIHVQADNSVRCFEWAPSAQQLYLTVYWNEVSKNG---ERQELESTFLCNAKCFLKDNHIG 75 (89)
Q Consensus 15 ~~~G~H~~~dggv~FrvWAPnA~~V~LiGDFN~W~~~~---~~m~~e~~~~~~~~~f~~~~~~~ 75 (89)
..||+|...+ ++.|++|||+|++|.|+ .|+.|.... .+|... .+. +|++|+++...|
T Consensus 14 ~plGA~~~~~-gv~F~v~ap~A~~V~L~-lf~~~~~~~~~~~~l~~~-~g~-vW~~~i~~~~~g 73 (1221)
T PRK14510 14 EPLGAVPDGG-GVNLALFSGAAERVEFC-LFDLWGVREEARIKLPGR-TGD-VWHGFIVGVGPG 73 (1221)
T ss_pred CCCceEEECC-eEEEEEECCCCCEEEEE-EEECCCCCeeEEEECCCC-cCC-EEEEEEccCCCC
Confidence 4699999754 59999999999999997 899996542 244322 333 489999976654
No 30
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=97.37 E-value=0.00029 Score=58.63 Aligned_cols=42 Identities=19% Similarity=0.073 Sum_probs=33.2
Q ss_pred EEEEEEccCCeEEEEEeecCCCCCCCCcceecCceeeeeEEEecCCCCC
Q psy9008 27 VRCFEWAPSAQQLYLTVYWNEVSKNGERQELESTFLCNAKCFLKDNHIG 75 (89)
Q Consensus 27 v~FrvWAPnA~~V~LiGDFN~W~~~~~~m~~e~~~~~~~~~f~~~~~~~ 75 (89)
++||+|||+|++|.|+.+ + ...+|.++..+ .|++++++...|
T Consensus 1 v~FrlwAP~A~~V~L~l~---~--~~~~m~k~~~G--vW~~~v~~~~~G 42 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLN---G--ALHAMQRLGDG--WFEITVPPVGPG 42 (542)
T ss_pred CEEEEECCCCCEEEEEeC---C--CEEeCeECCCC--EEEEEECCCCCC
Confidence 589999999999999973 2 35788887765 689999876544
No 31
>PLN02877 alpha-amylase/limit dextrinase
Probab=97.35 E-value=0.00043 Score=62.09 Aligned_cols=55 Identities=24% Similarity=0.299 Sum_probs=39.0
Q ss_pred hcCCeEecCCcEEEEEEccCCeEEEEEeecCCCCCC----CCcceecCceeeeeEEEecCCCCC
Q psy9008 16 KYGIHVQADNSVRCFEWAPSAQQLYLTVYWNEVSKN----GERQELESTFLCNAKCFLKDNHIG 75 (89)
Q Consensus 16 ~~G~H~~~dggv~FrvWAPnA~~V~LiGDFN~W~~~----~~~m~~e~~~~~~~~~f~~~~~~~ 75 (89)
.||++...+ +++|++|||.|++|.|+- |++++.. ..+|. +..+ .|++++++...|
T Consensus 214 ~LGA~~~~~-g~~F~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m~-~~~G--VWsv~v~~~~~G 272 (970)
T PLN02877 214 PLGAHFSKD-AVSLYLWAPTAQAVSLCL-YDDPRGKEPLEIVQLK-ESNG--VWSVEGPKSWEG 272 (970)
T ss_pred CCcceEecC-CEEEEEECCCCCEEEEEE-ecCCCCccceEEeccc-CCCC--EEEEEeccCCCC
Confidence 599998765 599999999999999984 5655322 23565 3334 578888865444
No 32
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.35 E-value=0.73 Score=35.89 Aligned_cols=42 Identities=21% Similarity=0.193 Sum_probs=28.1
Q ss_pred EEccCCeEEEEEeec-CCCCCCCCccee-----------cCceeeeeEEEecCCCC
Q psy9008 31 EWAPSAQQLYLTVYW-NEVSKNGERQEL-----------ESTFLCNAKCFLKDNHI 74 (89)
Q Consensus 31 vWAPnA~~V~LiGDF-N~W~~~~~~m~~-----------e~~~~~~~~~f~~~~~~ 74 (89)
.-||.|.++||+||+ ..|....++.+. ..-+ .-+.|++||||
T Consensus 25 ~~a~~ad~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~a~~G--~~v~~i~GN~D 78 (237)
T COG2908 25 EEAAQADALYILGDIFDGWIGDDEPPQLHRQVAQKLLRLARKG--TRVYYIHGNHD 78 (237)
T ss_pred hccccCcEEEEechhhhhhhcCCcccHHHHHHHHHHHHHHhcC--CeEEEecCchH
Confidence 458999999999996 577654432211 1112 34679999998
No 33
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=83.24 E-value=3.6 Score=27.64 Aligned_cols=31 Identities=10% Similarity=-0.028 Sum_probs=23.4
Q ss_pred EEEEEEcc---CCeEEEEEee---cCCCCCC-CCccee
Q psy9008 27 VRCFEWAP---SAQQLYLTVY---WNEVSKN-GERQEL 57 (89)
Q Consensus 27 v~FrvWAP---nA~~V~LiGD---FN~W~~~-~~~m~~ 57 (89)
++|++-+| --+.|+|+|| +.+|++. +.+|..
T Consensus 3 v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~ 40 (120)
T cd05814 3 VTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEK 40 (120)
T ss_pred EEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCcc
Confidence 78888886 3457999999 9999854 446654
No 34
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=79.93 E-value=5.9 Score=24.86 Aligned_cols=22 Identities=14% Similarity=0.031 Sum_probs=16.4
Q ss_pred CCeEEEEEe---ecCCCCCC-CCcce
Q psy9008 35 SAQQLYLTV---YWNEVSKN-GERQE 56 (89)
Q Consensus 35 nA~~V~LiG---DFN~W~~~-~~~m~ 56 (89)
--++|+|+| +|++|++. +.+|.
T Consensus 13 ~ge~l~v~G~~~~lG~W~~~~a~~l~ 38 (95)
T cd05808 13 WGQNVYVVGNVPELGNWSPANAVALS 38 (95)
T ss_pred CCCEEEEEeCcHHhCCCChhhCccCC
Confidence 457999999 58899965 44554
No 35
>PRK12568 glycogen branching enzyme; Provisional
Probab=77.97 E-value=2.7 Score=37.18 Aligned_cols=30 Identities=30% Similarity=0.364 Sum_probs=24.4
Q ss_pred HHhhcCCeEecCCcEEEEEEccCCeEEEEE
Q psy9008 13 SYNKYGIHVQADNSVRCFEWAPSAQQLYLT 42 (89)
Q Consensus 13 ~Y~~~G~H~~~dggv~FrvWAPnA~~V~Li 42 (89)
-+..||.|...++.+..|+|.|+|++|.|+
T Consensus 26 p~~~lg~h~~~~~~~~~r~~~p~a~~v~~~ 55 (730)
T PRK12568 26 AFAVLGPHPQADGRRQVRVLAPGAEAMGLI 55 (730)
T ss_pred chHhcCCcCCCCCcEEEEEECCCCcEEEEE
Confidence 467899996543326899999999999998
No 36
>PRK14705 glycogen branching enzyme; Provisional
Probab=75.07 E-value=6.9 Score=36.65 Aligned_cols=51 Identities=12% Similarity=0.036 Sum_probs=33.4
Q ss_pred HHhhcCCeEecCCcEEEEEEccCCeEEEEEeecCCCCCCCCcceecCceeeeeEEEec
Q psy9008 13 SYNKYGIHVQADNSVRCFEWAPSAQQLYLTVYWNEVSKNGERQELESTFLCNAKCFLK 70 (89)
Q Consensus 13 ~Y~~~G~H~~~dggv~FrvWAPnA~~V~LiGDFN~W~~~~~~m~~e~~~~~~~~~f~~ 70 (89)
-+..+|.|...++-+..|+|.|+|++|.|+.. ....+|+++..++ +..-+|
T Consensus 519 p~~~lg~h~~~~~~~~~r~~~p~a~~v~~~~~-----~~~~~~~~~~~g~--~~~~~~ 569 (1224)
T PRK14705 519 PHSVLGAHLDDHGHVTVRTVKHLAKAVSVVTA-----AGRVPMTHEAHGV--WAAVLE 569 (1224)
T ss_pred ChHhcCCcCCCCceEEEEEECCCCeEEEEEeC-----CCceeeeeCCCCE--EEEecc
Confidence 46789999655432479999999999999832 2223566544442 445555
No 37
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=72.06 E-value=1.8 Score=28.77 Aligned_cols=45 Identities=16% Similarity=-0.014 Sum_probs=25.3
Q ss_pred EEccCCeEEEEEeecCCCCCCCC---cceecCceeeeeEEEecCCCCC
Q psy9008 31 EWAPSAQQLYLTVYWNEVSKNGE---RQELESTFLCNAKCFLKDNHIG 75 (89)
Q Consensus 31 vWAPnA~~V~LiGDFN~W~~~~~---~m~~e~~~~~~~~~f~~~~~~~ 75 (89)
...+.+..|.+.||+-++..... .++.-.........+++||||-
T Consensus 15 ~~~~~~D~vi~~GD~~~~~~~~~~~~~~~~l~~~~~~~~~~v~GNHD~ 62 (135)
T cd07379 15 ISIPDGDVLIHAGDLTERGTLEELQKFLDWLKSLPHPHKIVIAGNHDL 62 (135)
T ss_pred CcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHhCCCCeEEEEECCCCC
Confidence 34678899999999987643211 0000000001123479999994
No 38
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=71.72 E-value=14 Score=23.45 Aligned_cols=31 Identities=6% Similarity=-0.006 Sum_probs=21.4
Q ss_pred EEEEE--EccCCeEEEEEeecC---CCCC-CCCccee
Q psy9008 27 VRCFE--WAPSAQQLYLTVYWN---EVSK-NGERQEL 57 (89)
Q Consensus 27 v~Frv--WAPnA~~V~LiGDFN---~W~~-~~~~m~~ 57 (89)
++|++ ...--++|+|+||.. +|++ .+.+|..
T Consensus 4 V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~ 40 (96)
T PF00686_consen 4 VTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQW 40 (96)
T ss_dssp EEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEB
T ss_pred EEEEEEeECCCCCEEEEEECcHHhCCCChHhcccccc
Confidence 56666 334457899999997 8997 5667774
No 39
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=71.72 E-value=3.3 Score=28.18 Aligned_cols=41 Identities=20% Similarity=0.116 Sum_probs=25.1
Q ss_pred ccCCeEEEEEeecCCCCCCCCcc---eecCceeeeeEEEecCCCCC
Q psy9008 33 APSAQQLYLTVYWNEVSKNGERQ---ELESTFLCNAKCFLKDNHIG 75 (89)
Q Consensus 33 APnA~~V~LiGDFN~W~~~~~~m---~~e~~~~~~~~~f~~~~~~~ 75 (89)
.+++..|.+.||+-+........ ...... .-..+++||||-
T Consensus 24 ~~~~d~li~~GDi~~~~~~~~~~~~~~~~~~~--~~v~~v~GNHD~ 67 (166)
T cd07404 24 APDADILVLAGDIGYLTDAPRFAPLLLALKGF--EPVIYVPGNHEF 67 (166)
T ss_pred CCCCCEEEECCCCCCCcchHHHHHHHHhhcCC--ccEEEeCCCcce
Confidence 46788899999998754322211 111111 235689999984
No 40
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=71.25 E-value=11 Score=24.42 Aligned_cols=26 Identities=8% Similarity=0.004 Sum_probs=19.6
Q ss_pred EEEEEEccCC---eEEEEEe---ecCCCCCCC
Q psy9008 27 VRCFEWAPSA---QQLYLTV---YWNEVSKNG 52 (89)
Q Consensus 27 v~FrvWAPnA---~~V~LiG---DFN~W~~~~ 52 (89)
++|++-.|.- +.|+|+| ++.+|++..
T Consensus 5 v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~ 36 (99)
T cd05809 5 QTFVVKNVPTTIGETVYITGSRAELGNWDTKQ 36 (99)
T ss_pred EEEEEcccccCCCCEEEEEeChHHhCCCChhh
Confidence 6777755544 6899999 788998654
No 41
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=67.75 E-value=6.2 Score=24.71 Aligned_cols=11 Identities=9% Similarity=0.090 Sum_probs=6.3
Q ss_pred EEEEEeecCCC
Q psy9008 38 QLYLTVYWNEV 48 (89)
Q Consensus 38 ~V~LiGDFN~W 48 (89)
.+.|.||||-+
T Consensus 32 ~~Ii~GDFN~~ 42 (119)
T PF14529_consen 32 PIIIGGDFNAH 42 (119)
T ss_dssp SEEEEEE----
T ss_pred CEEEEeECCCC
Confidence 78899999954
No 42
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=67.48 E-value=2 Score=28.94 Aligned_cols=41 Identities=10% Similarity=-0.070 Sum_probs=23.7
Q ss_pred cCCeEEEEEeecCCCCCCCCcce---ecCceeeeeEEEecCCCCCC
Q psy9008 34 PSAQQLYLTVYWNEVSKNGERQE---LESTFLCNAKCFLKDNHIGN 76 (89)
Q Consensus 34 PnA~~V~LiGDFN~W~~~~~~m~---~e~~~~~~~~~f~~~~~~~~ 76 (89)
..+..|.+.||+.+-........ .... ..-.++++||||..
T Consensus 22 ~~~D~vv~~GDl~~~~~~~~~~~~~~l~~~--~~p~~~v~GNHD~~ 65 (188)
T cd07392 22 EEADAVIVAGDITNFGGKEAAVEINLLLAI--GVPVLAVPGNCDTP 65 (188)
T ss_pred cCCCEEEECCCccCcCCHHHHHHHHHHHhc--CCCEEEEcCCCCCH
Confidence 46778999999976432211100 0111 12368899999953
No 43
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=66.58 E-value=29 Score=22.33 Aligned_cols=30 Identities=17% Similarity=0.117 Sum_probs=21.9
Q ss_pred EEEEEEccCC---eEEEEEeec---CCCCCC-CCcce
Q psy9008 27 VRCFEWAPSA---QQLYLTVYW---NEVSKN-GERQE 56 (89)
Q Consensus 27 v~FrvWAPnA---~~V~LiGDF---N~W~~~-~~~m~ 56 (89)
++|++-.|.. +.|+|+|+. .+|++. +.+|.
T Consensus 2 v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~ 38 (99)
T cd05816 2 VQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLS 38 (99)
T ss_pred EEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCC
Confidence 7899988853 579999985 689864 33554
No 44
>PRK05421 hypothetical protein; Provisional
Probab=64.97 E-value=3.8 Score=30.68 Aligned_cols=12 Identities=25% Similarity=0.257 Sum_probs=10.6
Q ss_pred EEEEeecCCCCC
Q psy9008 39 LYLTVYWNEVSK 50 (89)
Q Consensus 39 V~LiGDFN~W~~ 50 (89)
|.|.||||.|..
T Consensus 185 ~Il~GDFN~~~~ 196 (263)
T PRK05421 185 VILAGDFNTWSR 196 (263)
T ss_pred EEEEcccccCcc
Confidence 788999999974
No 45
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=62.18 E-value=3.1 Score=30.52 Aligned_cols=39 Identities=15% Similarity=0.049 Sum_probs=22.8
Q ss_pred cCCeEEEEEeecCCCCCCCCc----ce-ecCceeeeeEEEecCCCCC
Q psy9008 34 PSAQQLYLTVYWNEVSKNGER----QE-LESTFLCNAKCFLKDNHIG 75 (89)
Q Consensus 34 PnA~~V~LiGDFN~W~~~~~~----m~-~e~~~~~~~~~f~~~~~~~ 75 (89)
|.+.-|.|.||+. +...... +. ...... -..+|+||||-
T Consensus 40 ~~~D~viiaGDl~-~~~~~~~~~~~l~~l~~l~~--~v~~V~GNHD~ 83 (232)
T cd07393 40 APEDIVLIPGDIS-WAMKLEEAKLDLAWIDALPG--TKVLLKGNHDY 83 (232)
T ss_pred CCCCEEEEcCCCc-cCCChHHHHHHHHHHHhCCC--CeEEEeCCccc
Confidence 6889999999997 3221111 11 111111 14789999994
No 46
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=61.17 E-value=7.5 Score=28.52 Aligned_cols=41 Identities=15% Similarity=0.033 Sum_probs=25.2
Q ss_pred ccCCeEEEEEeec-CCCCCCCC--ccee---------cCceeeeeEEEecCCCCC
Q psy9008 33 APSAQQLYLTVYW-NEVSKNGE--RQEL---------ESTFLCNAKCFLKDNHIG 75 (89)
Q Consensus 33 APnA~~V~LiGDF-N~W~~~~~--~m~~---------e~~~~~~~~~f~~~~~~~ 75 (89)
+.++..|++.||+ +.|..... +... ...+ .-..|++||||-
T Consensus 30 ~~~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~g--~~v~~v~GNHD~ 82 (241)
T PRK05340 30 ARQADALYILGDLFEAWIGDDDPSPFAREIAAALKALSDSG--VPCYFMHGNRDF 82 (241)
T ss_pred hccCCEEEEccceeccccccCcCCHHHHHHHHHHHHHHHcC--CeEEEEeCCCch
Confidence 5688999999997 56754321 1100 1111 245689999995
No 47
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=55.59 E-value=20 Score=23.12 Aligned_cols=37 Identities=14% Similarity=0.052 Sum_probs=19.8
Q ss_pred CCeEEEEEeecCCCCCC-CCcceec------CceeeeeEEEecCCC
Q psy9008 35 SAQQLYLTVYWNEVSKN-GERQELE------STFLCNAKCFLKDNH 73 (89)
Q Consensus 35 nA~~V~LiGDFN~W~~~-~~~m~~e------~~~~~~~~~f~~~~~ 73 (89)
+|.+|+|-+-||+|... ...|.+. +.| ..+.-||..+
T Consensus 17 g~~~v~~~~G~n~W~~~~~~~m~~~~~~~~~~~~--~~tv~vP~~a 60 (87)
T PF03423_consen 17 GAPNVHLHGGFNRWTHVPGFGMTKMCVPDEGGWW--KATVDVPEDA 60 (87)
T ss_dssp -S-EEEEEETTS-B-SSS-EE-EEESS---TTEE--EEEEE--TTT
T ss_pred CCCcEEEEecCCCCCcCCCCCcceeeeeecCCEE--EEEEEEcCCc
Confidence 68999999999999754 4455553 344 3556666654
No 48
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=53.83 E-value=13 Score=27.21 Aligned_cols=41 Identities=12% Similarity=0.034 Sum_probs=24.9
Q ss_pred cCCeEEEEEeec-CCCCCCCCcc----------e-ecCceeeeeEEEecCCCCCC
Q psy9008 34 PSAQQLYLTVYW-NEVSKNGERQ----------E-LESTFLCNAKCFLKDNHIGN 76 (89)
Q Consensus 34 PnA~~V~LiGDF-N~W~~~~~~m----------~-~e~~~~~~~~~f~~~~~~~~ 76 (89)
..+..|.+.||+ ..|.....+. . ..... .-..|++||||..
T Consensus 29 ~~~d~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~~--~~v~~v~GNHD~~ 81 (231)
T TIGR01854 29 RKADALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQG--VPCYFMHGNRDFL 81 (231)
T ss_pred ccCCEEEEcCceeccccCCCCCCHHHHHHHHHHHHHHHCC--CeEEEEcCCCchh
Confidence 478899999997 4575332211 0 01111 3467999999964
No 49
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=44.10 E-value=23 Score=23.56 Aligned_cols=36 Identities=14% Similarity=-0.049 Sum_probs=23.2
Q ss_pred CeEEEEEeecCCCCCCCCcceecCceeeeeEEEecCCCCCCC
Q psy9008 36 AQQLYLTVYWNEVSKNGERQELESTFLCNAKCFLKDNHIGNG 77 (89)
Q Consensus 36 A~~V~LiGDFN~W~~~~~~m~~e~~~~~~~~~f~~~~~~~~~ 77 (89)
+..|.+.||+-+...... +... .-..+|+||||...
T Consensus 25 ~d~ii~~GD~~~~~~~~~-~~~~-----~~~~~V~GNhD~~~ 60 (155)
T cd00841 25 VDLIIHAGDVLYPGPLNE-LELK-----APVIAVRGNCDGEV 60 (155)
T ss_pred CCEEEECCccccccccch-hhcC-----CcEEEEeCCCCCcC
Confidence 788999999977654322 2211 12457999999753
No 50
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=44.09 E-value=22 Score=27.27 Aligned_cols=19 Identities=11% Similarity=0.083 Sum_probs=13.8
Q ss_pred ccCCeEEEEEeecCCCCCC
Q psy9008 33 APSAQQLYLTVYWNEVSKN 51 (89)
Q Consensus 33 APnA~~V~LiGDFN~W~~~ 51 (89)
.|....|.|.||||.+...
T Consensus 174 ~~~~~pvIl~GDfN~~~~s 192 (283)
T TIGR03395 174 IPKDETVLIGGDLNVNKGS 192 (283)
T ss_pred CCCCceEEEEeeCCCCCCC
Confidence 3545568999999988543
No 51
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=42.82 E-value=64 Score=28.72 Aligned_cols=61 Identities=13% Similarity=0.108 Sum_probs=39.3
Q ss_pred hhcCCeEec--CCcEEEEEEccCCeEEEEE-eecCCCCCCCCcceecCceeeeeEEEecCCCCC
Q psy9008 15 NKYGIHVQA--DNSVRCFEWAPSAQQLYLT-VYWNEVSKNGERQELESTFLCNAKCFLKDNHIG 75 (89)
Q Consensus 15 ~~~G~H~~~--dggv~FrvWAPnA~~V~Li-GDFN~W~~~~~~m~~e~~~~~~~~~f~~~~~~~ 75 (89)
-.+|++... ..++.|.+|..+|++|.|+ -|...=.........++...+++++|+|+=..|
T Consensus 18 ~plga~~~~~~~~g~~f~l~s~~a~~v~l~l~d~~~~~~~~~~~~~~~~~G~iw~~~~p~~~~g 81 (697)
T COG1523 18 YPLGATVIDIDGDGVNFALFSSHAERVELCLFDEAGNTEEGRLYPYDGELGAIWHLWLPGAKPG 81 (697)
T ss_pred ccccceeeeccCcceEEeeeccccceEEEEecCcccccccccccccCCccccEEEEEcCCCcee
Confidence 357888743 3469999999999999986 333322222212344444444799999987655
No 52
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=41.61 E-value=9.8 Score=27.72 Aligned_cols=39 Identities=10% Similarity=-0.140 Sum_probs=23.5
Q ss_pred cCCeEEEEEeecCCCCCCCCc----ceecCceeeeeEEEecCCCCC
Q psy9008 34 PSAQQLYLTVYWNEVSKNGER----QELESTFLCNAKCFLKDNHIG 75 (89)
Q Consensus 34 PnA~~V~LiGDFN~W~~~~~~----m~~e~~~~~~~~~f~~~~~~~ 75 (89)
+.+..|.+.||+-+..+.... +.+. .. .-..+++||||=
T Consensus 31 ~~~d~vv~~GDl~~~~~~~~~~~~~l~~~-~~--~pv~~v~GNHD~ 73 (239)
T TIGR03729 31 QKIDHLHIAGDISNDFQRSLPFIEKLQEL-KG--IKVTFNAGNHDM 73 (239)
T ss_pred cCCCEEEECCccccchhhHHHHHHHHHHh-cC--CcEEEECCCCCC
Confidence 467889999999874322221 1111 11 234589999994
No 53
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=41.41 E-value=4.4 Score=24.60 Aligned_cols=45 Identities=9% Similarity=-0.107 Sum_probs=24.3
Q ss_pred ccCCeEEEEEeecCCCCCCCCccee------cCceeeeeEEEecCCCCCCC
Q psy9008 33 APSAQQLYLTVYWNEVSKNGERQEL------ESTFLCNAKCFLKDNHIGNG 77 (89)
Q Consensus 33 APnA~~V~LiGDFN~W~~~~~~m~~------e~~~~~~~~~f~~~~~~~~~ 77 (89)
.+....|.+.||+-+-......... .......--.+++|||+-..
T Consensus 29 ~~~~d~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD~~~ 79 (200)
T PF00149_consen 29 ENKPDFIIFLGDLVDGGNPSEEWRAQFWFFIRLLNPKIPVYFILGNHDYYS 79 (200)
T ss_dssp HTTTSEEEEESTSSSSSSHHHHHHHHHHHHHHHHHTTTTEEEEE-TTSSHH
T ss_pred cCCCCEEEeeccccccccccccchhhhccchhhhhccccccccccccccce
Confidence 3566778889999766544322110 01111123457899998653
No 54
>KOG2983|consensus
Probab=41.40 E-value=40 Score=27.60 Aligned_cols=30 Identities=10% Similarity=0.205 Sum_probs=25.8
Q ss_pred CCcEEEEEEccCCeEEEEEeecCCCCCCCCc
Q psy9008 24 DNSVRCFEWAPSAQQLYLTVYWNEVSKNGER 54 (89)
Q Consensus 24 dggv~FrvWAPnA~~V~LiGDFN~W~~~~~~ 54 (89)
+...+|-+|.|.-.+|+|| |||-|-+....
T Consensus 228 dedfvfDVYi~k~~kv~lI-D~Npf~~~Tds 257 (334)
T KOG2983|consen 228 DEDFVFDVYITKERKVWLI-DFNPFCGSTDS 257 (334)
T ss_pred CCCeeEEEEecCCCcEEEE-eccCccCcccc
Confidence 5679999999999999998 99999876553
No 55
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=40.31 E-value=19 Score=25.16 Aligned_cols=41 Identities=20% Similarity=0.045 Sum_probs=24.9
Q ss_pred cCCeEEEEEeecCC-CCCCCCcc------------eecCceeeeeEEEecCCCCCC
Q psy9008 34 PSAQQLYLTVYWNE-VSKNGERQ------------ELESTFLCNAKCFLKDNHIGN 76 (89)
Q Consensus 34 PnA~~V~LiGDFN~-W~~~~~~m------------~~e~~~~~~~~~f~~~~~~~~ 76 (89)
.++..|.+.||+=+ |....... ..-... .--.|++||||-.
T Consensus 29 ~~~~~lvl~GDi~d~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~v~~v~GNHD~~ 82 (217)
T cd07398 29 GEADALYLLGDIFDLWFGDDEVVPPAAHEVLAALLRLADRG--TRVYYVPGNHDFL 82 (217)
T ss_pred CCCCEEEEeccEEEEEecCCCCCChHHHHHHHHHHHHHHCC--CeEEEECCCchHH
Confidence 57889999999854 65332211 111111 2356899999964
No 56
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=39.10 E-value=19 Score=23.93 Aligned_cols=9 Identities=11% Similarity=0.128 Sum_probs=7.2
Q ss_pred EEEEEeecC
Q psy9008 38 QLYLTVYWN 46 (89)
Q Consensus 38 ~V~LiGDFN 46 (89)
.+.|+||||
T Consensus 158 ~~iv~GDfN 166 (249)
T PF03372_consen 158 PVIVMGDFN 166 (249)
T ss_dssp EEEEEEE-S
T ss_pred eEEEEeecc
Confidence 589999999
No 57
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=36.33 E-value=27 Score=21.12 Aligned_cols=41 Identities=12% Similarity=-0.173 Sum_probs=23.6
Q ss_pred EccCCeEEEEEeecCCC-CCCCCcc-----eecCceeeeeEEEecCCCC
Q psy9008 32 WAPSAQQLYLTVYWNEV-SKNGERQ-----ELESTFLCNAKCFLKDNHI 74 (89)
Q Consensus 32 WAPnA~~V~LiGDFN~W-~~~~~~m-----~~e~~~~~~~~~f~~~~~~ 74 (89)
.+++...|.+.||+.+= ....... ...... .--.+++|||+
T Consensus 23 ~~~~~~~vi~~GD~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~GNHD 69 (131)
T cd00838 23 AAEKPDFVLVLGDLVGDGPDPEEVLAAALALLLLLG--IPVYVVPGNHD 69 (131)
T ss_pred cccCCCEEEECCcccCCCCCchHHHHHHHHHhhcCC--CCEEEeCCCce
Confidence 46788889999999642 2211111 111112 24467999997
No 58
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=36.29 E-value=14 Score=20.89 Aligned_cols=17 Identities=12% Similarity=0.386 Sum_probs=13.6
Q ss_pred EEEccCCeEEEEEeecC
Q psy9008 30 FEWAPSAQQLYLTVYWN 46 (89)
Q Consensus 30 rvWAPnA~~V~LiGDFN 46 (89)
.+|.|..+..|+.|..-
T Consensus 3 ~vWvpD~~egfv~g~I~ 19 (42)
T PF02736_consen 3 WVWVPDPKEGFVKGEII 19 (42)
T ss_dssp EEEEEESSSSEEEEEEE
T ss_pred EEEEeCCcccEEEEEEE
Confidence 47999999999888643
No 59
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=35.50 E-value=21 Score=25.58 Aligned_cols=36 Identities=17% Similarity=0.052 Sum_probs=23.3
Q ss_pred cCCeEEEEEeecCCCCCCCCc---ceecCceeeeeEEEecCCCC
Q psy9008 34 PSAQQLYLTVYWNEVSKNGER---QELESTFLCNAKCFLKDNHI 74 (89)
Q Consensus 34 PnA~~V~LiGDFN~W~~~~~~---m~~e~~~~~~~~~f~~~~~~ 74 (89)
|.+..|.+.||+-+.-+.+.. +-... ...+|.|||+
T Consensus 27 ~~~d~~~~~GD~v~~g~~~~~~~~~l~~~-----~~~~v~GNhe 65 (207)
T cd07424 27 PARDRLISVGDLIDRGPESLACLELLLEP-----WFHAVRGNHE 65 (207)
T ss_pred CCCCEEEEeCCcccCCCCHHHHHHHHhcC-----CEEEeECCCh
Confidence 568889999999776544331 11121 2357999998
No 60
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=35.36 E-value=7.2 Score=25.63 Aligned_cols=39 Identities=10% Similarity=0.013 Sum_probs=22.5
Q ss_pred CCeEEEEEeecCCCCCCCC------ccee-cCceeeeeEEEecCCCCC
Q psy9008 35 SAQQLYLTVYWNEVSKNGE------RQEL-ESTFLCNAKCFLKDNHIG 75 (89)
Q Consensus 35 nA~~V~LiGDFN~W~~~~~------~m~~-e~~~~~~~~~f~~~~~~~ 75 (89)
++..|.+.||+-+...... .+.+ ...+ .--.+++||||-
T Consensus 35 ~~d~vi~~GDl~~~~~~~~~~~~~~~~~~l~~~~--~~~~~v~GNHD~ 80 (144)
T cd07400 35 DPDLVVITGDLTQRGLPEEFEEAREFLDALPAPL--EPVLVVPGNHDV 80 (144)
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHccccC--CcEEEeCCCCeE
Confidence 5778999999977543211 0111 1111 134679999984
No 61
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=34.91 E-value=37 Score=25.59 Aligned_cols=10 Identities=10% Similarity=0.026 Sum_probs=8.3
Q ss_pred eEEEEEeecC
Q psy9008 37 QQLYLTVYWN 46 (89)
Q Consensus 37 ~~V~LiGDFN 46 (89)
+.|.|.||||
T Consensus 137 ~~~Ii~GD~N 146 (250)
T PRK13911 137 KPVIVCGDLN 146 (250)
T ss_pred CCEEEEcccc
Confidence 3678899998
No 62
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=34.78 E-value=1.2e+02 Score=19.12 Aligned_cols=29 Identities=14% Similarity=-0.179 Sum_probs=19.8
Q ss_pred EEEEEEccC---CeEEEEEeec---CCCCCCCCcce
Q psy9008 27 VRCFEWAPS---AQQLYLTVYW---NEVSKNGERQE 56 (89)
Q Consensus 27 v~FrvWAPn---A~~V~LiGDF---N~W~~~~~~m~ 56 (89)
++|++-+|. -+.++|+|+- -+|++ +.+|.
T Consensus 3 v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~-~~~l~ 37 (95)
T cd05813 3 VTFRVHYITHSDAQLVAVTGDHEELGSWHS-YIPLQ 37 (95)
T ss_pred EEEEEEeeeCCCCeEEEEEcChHHHCCCCc-cccCc
Confidence 677776663 2567899975 48986 56664
No 63
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=33.08 E-value=13 Score=26.49 Aligned_cols=44 Identities=11% Similarity=-0.096 Sum_probs=27.3
Q ss_pred ccCCeEEEEEeecCCCC-CCCCc-----ceecCceeeeeEEEecCCCCCCCc
Q psy9008 33 APSAQQLYLTVYWNEVS-KNGER-----QELESTFLCNAKCFLKDNHIGNGK 78 (89)
Q Consensus 33 APnA~~V~LiGDFN~W~-~~~~~-----m~~e~~~~~~~~~f~~~~~~~~~~ 78 (89)
.+...-|.+.||+.+.- +..+. +...... .-..++|||||=...
T Consensus 31 ~~~~D~~v~tGDl~~~~~~~~~~~~~~~l~~~~~~--~~~~~vpGNHD~~~~ 80 (301)
T COG1409 31 QLKPDLLVVTGDLTNDGEPEEYRRLKELLARLELP--APVIVVPGNHDARVV 80 (301)
T ss_pred cCCCCEEEEccCcCCCCCHHHHHHHHHHHhhccCC--CceEeeCCCCcCCch
Confidence 45668899999998773 22221 1211323 456789999995543
No 64
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=32.95 E-value=42 Score=21.35 Aligned_cols=26 Identities=15% Similarity=0.289 Sum_probs=17.3
Q ss_pred Hhhc-CCeEe-----cCCcEEEEEE-ccCCeEE
Q psy9008 14 YNKY-GIHVQ-----ADNSVRCFEW-APSAQQL 39 (89)
Q Consensus 14 Y~~~-G~H~~-----~dggv~FrvW-APnA~~V 39 (89)
...| |+... .+.+-+|++| ||++.+|
T Consensus 28 ~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV 60 (77)
T PF14026_consen 28 QAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAV 60 (77)
T ss_pred HhhcCCeEEEEEEEecCCCeEEEEEECCCHHHH
Confidence 4556 66643 2456788888 9988765
No 65
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=31.41 E-value=29 Score=24.03 Aligned_cols=43 Identities=16% Similarity=0.077 Sum_probs=26.3
Q ss_pred EccCCeEEEEEeecCCCCCCCC---cceecCceeeeeEEEecCCCCCCCc
Q psy9008 32 WAPSAQQLYLTVYWNEVSKNGE---RQELESTFLCNAKCFLKDNHIGNGK 78 (89)
Q Consensus 32 WAPnA~~V~LiGDFN~W~~~~~---~m~~e~~~~~~~~~f~~~~~~~~~~ 78 (89)
..+.+..|.+.||+-+-..... .+..-+ .-..+++||||....
T Consensus 39 ~~~~~d~vi~~GDl~~~~~~~~~~~~l~~~~----~~~~~v~GNHD~~~~ 84 (168)
T cd07390 39 TVGPDDTVYHLGDFSFGGKAGTELELLSRLN----GRKHLIKGNHDSSLE 84 (168)
T ss_pred hcCCCCEEEEeCCCCCCCChHHHHHHHHhCC----CCeEEEeCCCCchhh
Confidence 3567899999999976432211 111111 135689999997544
No 66
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.12 E-value=15 Score=29.74 Aligned_cols=15 Identities=20% Similarity=0.193 Sum_probs=12.9
Q ss_pred eEEEEEeecCC--CCCC
Q psy9008 37 QQLYLTVYWNE--VSKN 51 (89)
Q Consensus 37 ~~V~LiGDFN~--W~~~ 51 (89)
..|-+.||||. |+..
T Consensus 223 gpvIlaGDfNa~pWS~~ 239 (309)
T COG3021 223 GPVILAGDFNAPPWSRT 239 (309)
T ss_pred CCeEEeecCCCcchhHH
Confidence 67889999999 9873
No 67
>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type. Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (
Probab=30.56 E-value=70 Score=23.81 Aligned_cols=42 Identities=14% Similarity=0.119 Sum_probs=33.3
Q ss_pred CccHHHHHHHHhhcCCeEec--CCcEEEEEEccCCeEEEEEeecC
Q psy9008 4 PSGIEKFTTSYNKYGIHVQA--DNSVRCFEWAPSAQQLYLTVYWN 46 (89)
Q Consensus 4 eg~L~~fa~~Y~~~G~H~~~--dggv~FrvWAPnA~~V~LiGDFN 46 (89)
.++-|-...+|+.+|..... +|...|..|=+. ++++|.=|--
T Consensus 80 ~sDtEvll~~y~~~G~~~l~~L~G~FAfai~D~~-~~L~laRDr~ 123 (199)
T cd01909 80 LGDAELLLLLLTRLGLHAFRLAEGDFCFFIEDGN-GRLTLATDHA 123 (199)
T ss_pred CCHHHHHHHHHHHHhHHHHHHcCEEEEEEEEcCC-CEEEEEECCC
Confidence 44567778899999987654 678999999999 9999986643
No 68
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=30.24 E-value=16 Score=27.18 Aligned_cols=41 Identities=12% Similarity=0.006 Sum_probs=24.0
Q ss_pred ccCCeEEEEEeecCCCCCC-CCcc--e-ecCceeeeeEEEecCCCCC
Q psy9008 33 APSAQQLYLTVYWNEVSKN-GERQ--E-LESTFLCNAKCFLKDNHIG 75 (89)
Q Consensus 33 APnA~~V~LiGDFN~W~~~-~~~m--~-~e~~~~~~~~~f~~~~~~~ 75 (89)
.|.+..|.+.||+-+.... .+.. . ....- .-..+++||||=
T Consensus 53 ~~~~D~vvitGDl~~~~~~~~~~~~~~~l~~l~--~Pv~~v~GNHD~ 97 (275)
T PRK11148 53 QHEFDLIVATGDLAQDHSSEAYQHFAEGIAPLR--KPCVWLPGNHDF 97 (275)
T ss_pred CCCCCEEEECCCCCCCCCHHHHHHHHHHHhhcC--CcEEEeCCCCCC
Confidence 4678889999999875321 1110 0 01111 235679999994
No 69
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=30.15 E-value=32 Score=24.35 Aligned_cols=14 Identities=0% Similarity=-0.192 Sum_probs=11.1
Q ss_pred CCeEEEEEeecCCC
Q psy9008 35 SAQQLYLTVYWNEV 48 (89)
Q Consensus 35 nA~~V~LiGDFN~W 48 (89)
+++.|.+.||+=+-
T Consensus 45 ~pd~vi~lGDl~d~ 58 (171)
T cd07384 45 KPDVVLFLGDLFDG 58 (171)
T ss_pred CCCEEEEeccccCC
Confidence 56789999998654
No 70
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=29.35 E-value=48 Score=22.98 Aligned_cols=42 Identities=12% Similarity=0.077 Sum_probs=25.1
Q ss_pred cCCeEEEEEeecC-CCCCCCCc--c-----eecCceeeeeEEEecCCCCCCC
Q psy9008 34 PSAQQLYLTVYWN-EVSKNGER--Q-----ELESTFLCNAKCFLKDNHIGNG 77 (89)
Q Consensus 34 PnA~~V~LiGDFN-~W~~~~~~--m-----~~e~~~~~~~~~f~~~~~~~~~ 77 (89)
-+++.|.+.||+= +|...... . ...... .-..+++||||..-
T Consensus 40 ~~~d~lii~GDl~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~i~GNHD~~~ 89 (172)
T cd07391 40 YGPERLIILGDLKHSFGGLSRQEFEEVAFLRLLAKD--VDVILIRGNHDGGL 89 (172)
T ss_pred cCCCEEEEeCcccccccccCHHHHHHHHHHHhccCC--CeEEEEcccCccch
Confidence 4678999999986 45432211 1 111111 24578999999754
No 71
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=28.70 E-value=60 Score=23.60 Aligned_cols=36 Identities=17% Similarity=-0.032 Sum_probs=24.1
Q ss_pred cCCeEEEEEeecCCCCCCCCc---ceecCceeeeeEEEecCCCC
Q psy9008 34 PSAQQLYLTVYWNEVSKNGER---QELESTFLCNAKCFLKDNHI 74 (89)
Q Consensus 34 PnA~~V~LiGDFN~W~~~~~~---m~~e~~~~~~~~~f~~~~~~ 74 (89)
|....++++||.=+--+.+.. +-++.. ..+|.|||+
T Consensus 43 ~~~D~li~lGDlvDrGp~s~~vl~~l~~~~-----~~~v~GNHE 81 (218)
T PRK11439 43 PWRDLLISVGDLIDRGPQSLRCLQLLEEHW-----VRAVRGNHE 81 (218)
T ss_pred cccCEEEEcCcccCCCcCHHHHHHHHHcCC-----ceEeeCchH
Confidence 677889999999887665442 122221 236999998
No 72
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=27.79 E-value=62 Score=22.61 Aligned_cols=41 Identities=12% Similarity=-0.183 Sum_probs=23.9
Q ss_pred CCeEEEEEeecCCCCCCCC-c----ceecCceeeeeEEEecCCCCCCC
Q psy9008 35 SAQQLYLTVYWNEVSKNGE-R----QELESTFLCNAKCFLKDNHIGNG 77 (89)
Q Consensus 35 nA~~V~LiGDFN~W~~~~~-~----m~~e~~~~~~~~~f~~~~~~~~~ 77 (89)
++..|.+.||+-+...... . +.+-... .-..+++||||-..
T Consensus 32 ~~d~vl~~GD~~~~~~~~~~~~~~~l~~l~~~--~~v~~v~GNHD~~~ 77 (223)
T cd07385 32 KPDLVVLTGDLVDGSVDVLELLLELLKKLKAP--LGVYAVLGNHDYYS 77 (223)
T ss_pred CCCEEEEcCcccCCcchhhHHHHHHHhccCCC--CCEEEECCCccccc
Confidence 3457888999987654332 1 1111111 23568999999643
No 73
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=27.78 E-value=26 Score=26.34 Aligned_cols=40 Identities=10% Similarity=0.052 Sum_probs=24.4
Q ss_pred cCCeEEEEEeecCCCCCCCCcc----e-ecCceeeeeEEEecCCCCC
Q psy9008 34 PSAQQLYLTVYWNEVSKNGERQ----E-LESTFLCNAKCFLKDNHIG 75 (89)
Q Consensus 34 PnA~~V~LiGDFN~W~~~~~~m----~-~e~~~~~~~~~f~~~~~~~ 75 (89)
..+..|.+.||+-+........ . ..... .-..+++||||.
T Consensus 30 ~~~D~vv~~GDl~~~g~~~~~~~~~l~~l~~l~--~pv~~V~GNhD~ 74 (224)
T cd07388 30 TGADAIVLIGNLLPKAAKSEDYAAFFRILGEAH--LPTFYVPGPQDA 74 (224)
T ss_pred cCCCEEEECCCCCCCCCCHHHHHHHHHHHHhcC--CceEEEcCCCCh
Confidence 4678899999999975311111 1 11111 124689999997
No 74
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=27.46 E-value=56 Score=25.31 Aligned_cols=57 Identities=12% Similarity=0.055 Sum_probs=33.2
Q ss_pred CccHHHHHHHHhhcCCeEecCCcEEEEEEccCCeEEEEEeecCCCCCCCCccee--cCceeeeeEEEecCCCCC
Q psy9008 4 PSGIEKFTTSYNKYGIHVQADNSVRCFEWAPSAQQLYLTVYWNEVSKNGERQEL--ESTFLCNAKCFLKDNHIG 75 (89)
Q Consensus 4 eg~L~~fa~~Y~~~G~H~~~dggv~FrvWAPnA~~V~LiGDFN~W~~~~~~m~~--e~~~~~~~~~f~~~~~~~ 75 (89)
.|.++.+.+..++++. .|.+..+.++||+=+--+.+...-. .... .-..+|.|||+=
T Consensus 10 HG~~~~l~~ll~~~~~-------------~~~~D~li~lGDlVdrGp~s~~vl~~l~~l~--~~~~~VlGNHD~ 68 (275)
T PRK00166 10 QGCYDELQRLLEKIDF-------------DPAKDTLWLVGDLVNRGPDSLEVLRFVKSLG--DSAVTVLGNHDL 68 (275)
T ss_pred CCCHHHHHHHHHhcCC-------------CCCCCEEEEeCCccCCCcCHHHHHHHHHhcC--CCeEEEecChhH
Confidence 3566666666665432 3567889999999876555442111 0000 113479999983
No 75
>PF07065 D123: D123; InterPro: IPR009772 This family contains a number of eukaryotic D123 proteins approximately 330 residues long. It has been shown that mutated variants of D123 exhibit temperature-dependent differences in their degradation rate [].
Probab=26.35 E-value=1e+02 Score=24.38 Aligned_cols=29 Identities=7% Similarity=0.145 Sum_probs=23.9
Q ss_pred CcEEEEEEccCC-eEEEEEeecCCCCCCCCc
Q psy9008 25 NSVRCFEWAPSA-QQLYLTVYWNEVSKNGER 54 (89)
Q Consensus 25 ggv~FrvWAPnA-~~V~LiGDFN~W~~~~~~ 54 (89)
..++|=+|.+.. .+|+|| |||-|.+...+
T Consensus 215 ~~~v~DVyi~~~~~~v~LI-D~NPf~~~Td~ 244 (299)
T PF07065_consen 215 DNYVFDVYITRDKDKVWLI-DFNPFGPRTDP 244 (299)
T ss_pred CCEEEEEEEcCCCCeEEEE-EecCCcccCcc
Confidence 459999999998 889998 99999875543
No 76
>COG2845 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.23 E-value=30 Score=28.69 Aligned_cols=19 Identities=5% Similarity=-0.127 Sum_probs=16.4
Q ss_pred EEEEEEccCCeEEEEEeec
Q psy9008 27 VRCFEWAPSAQQLYLTVYW 45 (89)
Q Consensus 27 v~FrvWAPnA~~V~LiGDF 45 (89)
.+-++-.|+|++|.++|||
T Consensus 107 ~~~~~k~~~a~kvLvvGDs 125 (354)
T COG2845 107 TTIAAKSRDADKVLVVGDS 125 (354)
T ss_pred chhhhhCCCCCEEEEechH
Confidence 3447889999999999999
No 77
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=26.16 E-value=1.8e+02 Score=18.60 Aligned_cols=20 Identities=10% Similarity=0.285 Sum_probs=14.4
Q ss_pred eEEEEEee---cCCCCCC-CCcce
Q psy9008 37 QQLYLTVY---WNEVSKN-GERQE 56 (89)
Q Consensus 37 ~~V~LiGD---FN~W~~~-~~~m~ 56 (89)
+.|+|+|+ +.+|++. +.+|.
T Consensus 14 e~l~v~Gs~~~LG~W~~~~a~~m~ 37 (100)
T cd05817 14 EAVYISGNCNQLGNWNPSKAKRMQ 37 (100)
T ss_pred CEEEEEeCcHHHCCCCccccCccc
Confidence 68999998 6789864 33443
No 78
>PF02777 Sod_Fe_C: Iron/manganese superoxide dismutases, C-terminal domain Note: SCOP classifies the two domains separately.; InterPro: IPR019832 Superoxide dismutases (SODs) (1.15.1.1 from EC) catalyse the conversion of superoxide radicals to molecular oxygen. Their function is to destroy the radicals that are normally produced within cells and are toxic to biological systems. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one [, , ]. This family includes both single metal-binding SODs and cambialistic SOD, which can bind either Mn or Fe. Fe/MnSODs are ubiquitous enzymes that are responsible for the majority of SOD activity in prokaryotes, fungi, blue-green algae and mitochondria. Fe/MnSODs are found as homodimers or homotetramers. The structure of Fe/MnSODs can be divided into two domains, an alpha N-terminal domain and an alpha/beta C-terminal domain, connected by a loop. The structure of the N-terminal domain consists of a two helices in an antiparallel hairpin, with a left-handed twist []. The structure of the C-terminal domain is of the alpha/beta type, and consists of a three-stranded antiparallel beta-sheet in the order 213, along with four helices in the arrangement alpha/beta(2)/alpha/beta/alpha(2) []. This entry represents the C-terminal domain of Manganese/iron superoxide dismutase. ; GO: 0004784 superoxide dismutase activity, 0046872 metal ion binding, 0006801 superoxide metabolic process, 0055114 oxidation-reduction process; PDB: 1KKC_Y 2GOJ_B 1UES_C 1UER_C 1QNN_A 1MY6_A 1MA1_F 1P7G_Q 3EVK_D 2GPC_A ....
Probab=25.53 E-value=94 Score=20.28 Aligned_cols=43 Identities=14% Similarity=0.211 Sum_probs=32.6
Q ss_pred CccHHHHHHHHhhcCCeEecCCcEEEEEEccCCeEEEEEeecCC
Q psy9008 4 PSGIEKFTTSYNKYGIHVQADNSVRCFEWAPSAQQLYLTVYWNE 47 (89)
Q Consensus 4 eg~L~~fa~~Y~~~G~H~~~dggv~FrvWAPnA~~V~LiGDFN~ 47 (89)
-||++.|.......+..... .|+.+.+|-|..+++.++--.|.
T Consensus 15 FGS~d~fk~~f~~~a~~~~G-sGW~wLv~d~~~~~L~i~~t~n~ 57 (106)
T PF02777_consen 15 FGSFDNFKAEFTAAALSVFG-SGWVWLVYDPSDGKLSIISTPNH 57 (106)
T ss_dssp HSSHHHHHHHHHHHHHHSSS-SEEEEEEEETTTTEEEEEEEETT
T ss_pred hCCHHHHHHHHHHHHhcCCC-CCeeeeeeccccceeeeeeeccc
Confidence 37888888877776654432 36999999999999999865543
No 79
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=23.76 E-value=79 Score=24.28 Aligned_cols=41 Identities=12% Similarity=0.017 Sum_probs=23.5
Q ss_pred CCeEEEEEeecC-CCCCCCC-cc------eecCce---------eeeeEEEecCCCCC
Q psy9008 35 SAQQLYLTVYWN-EVSKNGE-RQ------ELESTF---------LCNAKCFLKDNHIG 75 (89)
Q Consensus 35 nA~~V~LiGDFN-~W~~~~~-~m------~~e~~~---------~~~~~~f~~~~~~~ 75 (89)
.+.-|.+.|||- .|+.... .| .....| ....+.|+.|||..
T Consensus 28 ~~D~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~~t~fi~GNHE~ 85 (262)
T cd00844 28 KVDLLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSGEKKAPILTIFIGGNHEA 85 (262)
T ss_pred CCcEEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcCCccCCeeEEEECCCCCC
Confidence 456678889995 5543321 11 111111 23457999999985
No 80
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=23.11 E-value=48 Score=26.11 Aligned_cols=12 Identities=25% Similarity=0.124 Sum_probs=10.6
Q ss_pred EEEEEeecC------CCC
Q psy9008 38 QLYLTVYWN------EVS 49 (89)
Q Consensus 38 ~V~LiGDFN------~W~ 49 (89)
.+-|+|||| .|.
T Consensus 166 p~vl~GDFN~~p~s~~yr 183 (259)
T COG3568 166 PTVLMGDFNNEPGSAEYR 183 (259)
T ss_pred ceEEEccCCCCCCCccce
Confidence 789999999 885
No 81
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type. Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.
Probab=22.44 E-value=1.1e+02 Score=22.04 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=32.7
Q ss_pred CccHHHHHHHHhhcCCeEec--CCcEEEEEEccCCeEEEEEeecC
Q psy9008 4 PSGIEKFTTSYNKYGIHVQA--DNSVRCFEWAPSAQQLYLTVYWN 46 (89)
Q Consensus 4 eg~L~~fa~~Y~~~G~H~~~--dggv~FrvWAPnA~~V~LiGDFN 46 (89)
..+-+....+|+.+|..... +|.+.|..|-+..++++++-|--
T Consensus 96 ~sD~e~l~~~~~~~g~~~~~~l~G~fa~vi~d~~~~~l~~~rD~~ 140 (220)
T cd00712 96 HSDTEVILHLYEEWGEDCLERLNGMFAFALWDKRKRRLFLARDRF 140 (220)
T ss_pred CChHHHHHHHHHHHhHHHHHHhhheEEEEEEECCCCEEEEEECCC
Confidence 34566778889998855443 57899999999889999986643
No 82
>PRK11756 exonuclease III; Provisional
Probab=22.42 E-value=52 Score=24.12 Aligned_cols=10 Identities=20% Similarity=0.003 Sum_probs=8.3
Q ss_pred EEEEEeecCC
Q psy9008 38 QLYLTVYWNE 47 (89)
Q Consensus 38 ~V~LiGDFN~ 47 (89)
.|.|+||||-
T Consensus 145 pvIl~GDfN~ 154 (268)
T PRK11756 145 PLLIMGDMNI 154 (268)
T ss_pred CEEEEeeccc
Confidence 3789999994
No 83
>PLN02316 synthase/transferase
Probab=22.11 E-value=1.2e+02 Score=28.31 Aligned_cols=17 Identities=6% Similarity=0.229 Sum_probs=14.8
Q ss_pred CCeEEEEEeecCCCCCC
Q psy9008 35 SAQQLYLTVYWNEVSKN 51 (89)
Q Consensus 35 nA~~V~LiGDFN~W~~~ 51 (89)
++++|++.|-||.|...
T Consensus 506 ~~~ev~~~g~~NrWth~ 522 (1036)
T PLN02316 506 GKPEVWFRGSFNRWTHR 522 (1036)
T ss_pred CCceEEEEccccCcCCC
Confidence 48899999999999744
No 84
>PLN02316 synthase/transferase
Probab=21.98 E-value=1.5e+02 Score=27.68 Aligned_cols=40 Identities=5% Similarity=0.100 Sum_probs=25.9
Q ss_pred ccCCeEEEEEeecCCCCCCC-C--ccee----cCceeeeeEEEecCCC
Q psy9008 33 APSAQQLYLTVYWNEVSKNG-E--RQEL----ESTFLCNAKCFLKDNH 73 (89)
Q Consensus 33 APnA~~V~LiGDFN~W~~~~-~--~m~~----e~~~~~~~~~f~~~~~ 73 (89)
..++.+|+|.|-||+|.... . +|.+ ++.|-+ .+..||..+
T Consensus 342 L~~~~~v~i~gg~N~W~~~~~~~~~~~~~~~~~g~ww~-a~v~vP~~A 388 (1036)
T PLN02316 342 LAHSTEIWIHGGYNNWIDGLSIVEKLVKSEEKDGDWWY-AEVVVPERA 388 (1036)
T ss_pred CCCCCcEEEEEeEcCCCCCCcccceeecccCCCCCEEE-EEEecCCCc
Confidence 45789999999999998432 2 2222 444544 667776554
No 85
>PF04311 DUF459: Protein of unknown function (DUF459); InterPro: IPR007407 This is a putative periplasmic protein.
Probab=21.81 E-value=49 Score=26.77 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=15.4
Q ss_pred EEccCCeEEEE--EeecC--CCC
Q psy9008 31 EWAPSAQQLYL--TVYWN--EVS 49 (89)
Q Consensus 31 vWAPnA~~V~L--iGDFN--~W~ 49 (89)
+=.|+|+.+.| +|||. .|.
T Consensus 32 ~k~p~a~~~lV~vvGD~~a~~la 54 (327)
T PF04311_consen 32 EKFPNARRILVRVVGDFLASGLA 54 (327)
T ss_pred ccCCccceEEEeeccchhhhhhh
Confidence 44899999999 99996 564
No 86
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=21.68 E-value=63 Score=23.56 Aligned_cols=45 Identities=11% Similarity=-0.035 Sum_probs=24.7
Q ss_pred EccCCeEEEEEeecC-CCCCCCCc-------ce-ecCceeeeeEEEecCCCCCC
Q psy9008 32 WAPSAQQLYLTVYWN-EVSKNGER-------QE-LESTFLCNAKCFLKDNHIGN 76 (89)
Q Consensus 32 WAPnA~~V~LiGDFN-~W~~~~~~-------m~-~e~~~~~~~~~f~~~~~~~~ 76 (89)
..|...-|.+.||.- ++.....+ +. ......-+-..+++||||-.
T Consensus 46 ~~~~pd~ii~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~i~GNHD~~ 99 (262)
T cd07395 46 LNPKPKFVVVCGDLVNAMPGDELRERQVSDLKDVLSLLDPDIPLVCVCGNHDVG 99 (262)
T ss_pred cCCCCCEEEEeCCcCCCCcchhhHHHHHHHHHHHHhhccCCCcEEEeCCCCCCC
Confidence 357778899999985 44432211 00 01110012356899999954
No 87
>PF14638 FNIP_C: Folliculin-interacting protein C-terminus
Probab=21.28 E-value=68 Score=24.14 Aligned_cols=19 Identities=11% Similarity=0.151 Sum_probs=16.3
Q ss_pred ccCCeEEEEEeecCCCCCC
Q psy9008 33 APSAQQLYLTVYWNEVSKN 51 (89)
Q Consensus 33 APnA~~V~LiGDFN~W~~~ 51 (89)
=|.|++|.||+|-+.|.-.
T Consensus 69 epv~EavcIVADtd~wtV~ 87 (192)
T PF14638_consen 69 EPVAEAVCIVADTDTWTVK 87 (192)
T ss_pred CCCccceEEEEeCCCCEEE
Confidence 4789999999999999743
No 88
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=20.58 E-value=46 Score=24.27 Aligned_cols=66 Identities=14% Similarity=0.053 Sum_probs=39.9
Q ss_pred CccHHHHHHHHhhcCCeEecCCcEEEEEEccCCeEEEEEeecCCCCCCCCccee-----c--CceeeeeEEEecCCCCC
Q psy9008 4 PSGIEKFTTSYNKYGIHVQADNSVRCFEWAPSAQQLYLTVYWNEVSKNGERQEL-----E--STFLCNAKCFLKDNHIG 75 (89)
Q Consensus 4 eg~L~~fa~~Y~~~G~H~~~dggv~FrvWAPnA~~V~LiGDFN~W~~~~~~m~~-----e--~~~~~~~~~f~~~~~~~ 75 (89)
.|.++.+.+.-+..++.... ..|.+.+..+.+.||+-+.-+.+.+.-. . ..-...-..+|.|||+-
T Consensus 7 HG~~~~l~~ll~~~~~~~~~------~~~~~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~~~~~~v~~l~GNHE~ 79 (208)
T cd07425 7 HGDLDAFREILKGAGVIDSN------DHWIGGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAAKAGGKVHFLLGNHEL 79 (208)
T ss_pred cCCHHHHHHHHHHCCCCCcc------ccccCCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHHhcCCeEEEeeCCCcH
Confidence 45677777777766654221 1488899999999999887655432111 0 00000123569999983
No 89
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.19 E-value=62 Score=22.94 Aligned_cols=10 Identities=10% Similarity=-0.064 Sum_probs=8.0
Q ss_pred EEEEEeecCC
Q psy9008 38 QLYLTVYWNE 47 (89)
Q Consensus 38 ~V~LiGDFN~ 47 (89)
.+.|.||||-
T Consensus 143 ~~Il~GDFN~ 152 (255)
T TIGR00633 143 PVIICGDMNV 152 (255)
T ss_pred cEEEEeeccc
Confidence 4678899995
Done!