Query psy9008
Match_columns 89
No_of_seqs 120 out of 1035
Neff 4.2
Searched_HMMs 29240
Date Sat Aug 17 01:25:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9008.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9008hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3aml_A OS06G0726400 protein; s 99.6 9.7E-16 3.3E-20 128.7 4.8 66 3-71 44-109 (755)
2 3k1d_A 1,4-alpha-glucan-branch 99.5 3.8E-14 1.3E-18 119.1 5.8 62 12-75 116-185 (722)
3 1m7x_A 1,4-alpha-glucan branch 99.3 2.9E-12 9.7E-17 104.1 4.9 63 11-75 8-74 (617)
4 1z0n_A 5'-AMP-activated protei 99.1 5.8E-11 2E-15 77.6 4.0 38 26-69 12-49 (96)
5 2e8y_A AMYX protein, pullulana 98.6 2.4E-08 8E-13 82.6 5.0 57 16-75 105-161 (718)
6 3vgf_A Malto-oligosyltrehalose 98.6 1.9E-08 6.7E-13 80.8 4.3 52 17-75 2-53 (558)
7 4aio_A Limit dextrinase; hydro 98.6 1.9E-08 6.4E-13 82.0 3.4 56 17-75 129-185 (884)
8 2ya0_A Putative alkaline amylo 98.5 6.5E-08 2.2E-12 79.9 5.2 55 16-72 14-72 (714)
9 2fhf_A Pullulanase; multiple d 98.5 6.8E-08 2.3E-12 84.5 4.5 57 16-75 296-354 (1083)
10 2ya1_A Putative alkaline amylo 98.4 1.5E-07 5.1E-12 81.4 4.6 54 16-71 321-378 (1014)
11 2wsk_A Glycogen debranching en 98.4 2.7E-07 9.2E-12 75.7 4.6 57 15-75 10-67 (657)
12 3m07_A Putative alpha amylase; 98.4 2.5E-07 8.7E-12 75.8 4.4 54 16-76 33-86 (618)
13 2wan_A Pullulanase; hydrolase, 98.3 3E-07 1E-11 78.6 4.6 54 17-74 318-374 (921)
14 2vr5_A Glycogen operon protein 98.3 4.7E-07 1.6E-11 75.2 5.1 57 16-75 19-80 (718)
15 1bf2_A Isoamylase; hydrolase, 98.2 5.2E-07 1.8E-11 75.3 3.5 55 15-73 5-65 (750)
16 1wzl_A Alpha-amylase II; pullu 98.2 1.1E-06 3.7E-11 70.6 4.6 59 14-73 11-77 (585)
17 2bhu_A Maltooligosyltrehalose 98.1 1.7E-06 5.7E-11 70.5 3.0 49 15-70 23-72 (602)
18 3faw_A Reticulocyte binding pr 98.0 3E-06 1E-10 72.7 3.5 53 16-70 134-190 (877)
19 1j0h_A Neopullulanase; beta-al 97.8 1.8E-05 6.2E-10 63.6 4.3 47 26-73 24-79 (588)
20 1ea9_C Cyclomaltodextrinase; h 97.8 5.6E-06 1.9E-10 66.6 1.2 47 26-73 24-76 (583)
21 1ji1_A Alpha-amylase I; beta/a 97.7 4E-05 1.4E-09 62.1 5.2 54 17-74 24-86 (637)
22 4aee_A Alpha amylase, catalyti 97.6 8.6E-05 2.9E-09 61.0 5.6 39 26-64 19-59 (696)
23 3nme_A Ptpkis1 protein, SEX4 g 97.4 7.5E-05 2.6E-09 56.1 3.2 32 25-57 170-201 (294)
24 4aef_A Neopullulanase (alpha-a 97.4 0.00014 4.7E-09 58.9 4.5 46 14-59 2-50 (645)
25 2qlv_B Protein SIP2, protein S 97.0 0.00053 1.8E-08 51.5 4.0 27 30-57 8-34 (252)
26 2z0b_A GDE5, KIAA1434, putativ 92.2 0.38 1.3E-05 32.3 5.8 33 26-58 10-48 (131)
27 3k1d_A 1,4-alpha-glucan-branch 87.2 0.38 1.3E-05 40.5 3.1 51 13-71 21-71 (722)
28 1ac0_A Glucoamylase; hydrolase 80.8 1.6 5.6E-05 27.6 3.4 33 26-58 8-46 (108)
29 4fch_A Outer membrane protein 72.9 3.2 0.00011 29.3 3.4 44 29-72 5-51 (221)
30 3c8d_A Enterochelin esterase; 67.1 14 0.00049 27.7 6.1 46 7-57 11-73 (403)
31 4fe9_A Outer membrane protein 65.0 3.3 0.00011 32.0 2.2 21 37-57 151-172 (470)
32 2a40_B Deoxyribonuclease-1; WA 64.5 3.1 0.0001 28.8 1.8 14 37-50 161-174 (260)
33 1sr4_B CDT B, cytolethal diste 62.8 3.3 0.00011 31.1 1.8 12 37-48 170-181 (261)
34 1zwx_A SMCL, sphingomyelinase- 59.8 6.6 0.00023 27.1 2.8 16 36-51 187-202 (301)
35 2ddr_A Sphingomyelin phosphodi 54.7 6.4 0.00022 27.1 2.1 14 36-49 187-200 (306)
36 3i41_A Beta-hemolysin; beta to 54.7 6.3 0.00021 28.4 2.1 17 35-51 205-221 (317)
37 2jc4_A Exodeoxyribonuclease II 51.6 7.1 0.00024 25.9 1.8 14 37-50 139-152 (256)
38 4f1h_A Tyrosyl-DNA phosphodies 51.1 9.7 0.00033 24.2 2.3 12 37-48 145-156 (250)
39 3l1w_A Uncharacterized protein 49.2 9.6 0.00033 25.6 2.2 13 38-50 160-172 (257)
40 4gz1_A Tyrosyl-DNA phosphodies 48.2 10 0.00034 24.8 2.1 15 34-48 148-162 (256)
41 2ei9_A Non-LTR retrotransposon 46.1 20 0.00067 25.0 3.5 22 28-49 92-132 (240)
42 1uf3_A Hypothetical protein TT 45.8 5 0.00017 26.4 0.3 41 35-77 32-77 (228)
43 1xm7_A Hypothetical protein AQ 45.3 8.4 0.00029 25.7 1.4 39 34-76 42-84 (195)
44 1wdu_A TRAS1 ORF2P; four-layer 42.2 12 0.00042 25.2 1.8 12 38-49 148-159 (245)
45 3mpr_A Putative endonuclease/e 39.6 15 0.00052 25.7 2.1 14 37-50 171-184 (298)
46 3teb_A Endonuclease/exonucleas 39.0 17 0.00057 24.2 2.1 13 37-49 169-181 (266)
47 1vyb_A ORF2 contains A reverse 38.2 13 0.00046 24.2 1.5 10 38-47 139-148 (238)
48 3g6s_A Putative endonuclease/e 37.2 18 0.00062 24.4 2.1 13 37-49 165-177 (267)
49 1ako_A Exonuclease III; AP-end 36.5 15 0.00051 24.5 1.5 12 37-48 144-155 (268)
50 2jc5_A Exodeoxyribonuclease; h 36.4 15 0.00051 24.3 1.5 11 37-47 142-152 (259)
51 2voa_A AF_EXO, XTHA, exodeoxyr 33.9 17 0.00058 24.2 1.5 11 37-47 139-149 (257)
52 1nnw_A Hypothetical protein; s 33.3 3.8 0.00013 28.1 -1.9 39 35-75 33-75 (252)
53 4aef_A Neopullulanase (alpha-a 32.9 67 0.0023 25.7 5.1 41 27-74 127-170 (645)
54 2o3h_A DNA-(apurinic or apyrim 31.9 19 0.00064 24.6 1.5 11 37-47 170-180 (285)
55 3g91_A MTH0212, exodeoxyribonu 27.3 26 0.00089 23.7 1.5 9 38-46 145-153 (265)
56 3rl5_A Metallophosphoesterase 26.4 8 0.00027 29.1 -1.3 42 33-75 77-122 (296)
57 1hd7_A DNA-(apurinic or apyrim 26.2 27 0.00091 24.8 1.5 10 38-47 204-213 (318)
58 4fva_A 5'-tyrosyl-DNA phosphod 25.2 41 0.0014 21.8 2.1 11 38-48 159-169 (256)
59 2q8u_A Exonuclease, putative; 25.0 12 0.00041 27.1 -0.6 43 35-77 61-110 (336)
60 1ii7_A MRE11 nuclease; RAD50, 23.8 17 0.00059 26.3 0.1 41 35-77 40-89 (333)
61 3pg6_A E3 ubiquitin-protein li 22.0 50 0.0017 23.5 2.2 43 34-76 47-90 (159)
62 3ib7_A ICC protein; metallopho 20.9 13 0.00044 26.0 -1.1 15 34-48 65-79 (330)
63 3d03_A Phosphohydrolase; glyce 20.6 36 0.0012 22.8 1.2 41 33-75 39-83 (274)
No 1
>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A
Probab=99.58 E-value=9.7e-16 Score=128.69 Aligned_cols=66 Identities=24% Similarity=0.348 Sum_probs=59.8
Q ss_pred CCccHHHHHHHHhhcCCeEecCCcEEEEEEccCCeEEEEEeecCCCCCCCCcceecCceeeeeEEEecC
Q psy9008 3 QPSGIEKFTTSYNKYGIHVQADNSVRCFEWAPSAQQLYLTVYWNEVSKNGERQELESTFLCNAKCFLKD 71 (89)
Q Consensus 3 ~eg~L~~fa~~Y~~~G~H~~~dggv~FrvWAPnA~~V~LiGDFN~W~~~~~~m~~e~~~~~~~~~f~~~ 71 (89)
.+++|++|+++|+.||+|... ++++|++|||+|++|+|+||||+|+...++|.+...+ +|++|+|+
T Consensus 44 ~~~~~~~f~~~~~~lGa~~~~-~gv~F~vwAP~A~~V~l~gdfn~w~~~~~~m~~~~~G--vW~~~v~~ 109 (755)
T 3aml_A 44 HEGGLEEFSKGYLKFGINTVD-GATIYREWAPAAQEAQLIGEFNNWNGAKHKMEKDKFG--IWSIKISH 109 (755)
T ss_dssp HHSCHHHHTTGGGTSEEEEET-TEEEEEEECTTCSEEEEEEGGGTTCCTTCBCEECTTS--EEEEEEEC
T ss_pred cCCcHHHHhhhhhcCceEEeC-CeEEEEEECCCCCEEEEEEecCCCCCceeeceeCCCC--EEEEEEcc
Confidence 467899999999999999875 5699999999999999999999999889999987665 69999995
No 2
>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis}
Probab=99.47 E-value=3.8e-14 Score=119.11 Aligned_cols=62 Identities=18% Similarity=0.193 Sum_probs=52.6
Q ss_pred HHHhhcCCeEec-CC------cEEEEEEccCCeEEEEEeecCCCCCCCCcceecC-ceeeeeEEEecCCCCC
Q psy9008 12 TSYNKYGIHVQA-DN------SVRCFEWAPSAQQLYLTVYWNEVSKNGERQELES-TFLCNAKCFLKDNHIG 75 (89)
Q Consensus 12 ~~Y~~~G~H~~~-dg------gv~FrvWAPnA~~V~LiGDFN~W~~~~~~m~~e~-~~~~~~~~f~~~~~~~ 75 (89)
++|++||||... ++ +++|++|||+|++|+|+||||+|+...++|.+.. .+ +|++|+|+...|
T Consensus 116 ~~~~~~gah~~~~~~~~~~~~g~~F~vwAP~A~~V~l~gdfn~w~~~~~~m~~~~~~G--vW~~~i~~~~~g 185 (722)
T 3k1d_A 116 RLWEVLGAHPRSFTTADGVVSGVSFAVWAPNAKGVSLIGEFNGWNGHEAPMRVLGPSG--VWELFWPDFPCD 185 (722)
T ss_dssp TGGGTSEEEEEEEECSSSEEEEEEEEEECTTCSEEEEEEGGGTTCCCSCBCEECGGGC--EEEEEEETCCTT
T ss_pred HHHHhcCCEEEeecCCcCCCceEEEEEECCCCCEEEEEeecCCCCCCcccCEEcCCCC--EEEEEeCCCCCC
Confidence 489999999874 22 6999999999999999999999999899999753 35 689999986544
No 3
>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*
Probab=99.27 E-value=2.9e-12 Score=104.11 Aligned_cols=63 Identities=21% Similarity=0.313 Sum_probs=52.7
Q ss_pred HHHHhhcCCeEecC---CcEEEEEEccCCeEEEEEeecCCCCCCCCccee-cCceeeeeEEEecCCCCC
Q psy9008 11 TTSYNKYGIHVQAD---NSVRCFEWAPSAQQLYLTVYWNEVSKNGERQEL-ESTFLCNAKCFLKDNHIG 75 (89)
Q Consensus 11 a~~Y~~~G~H~~~d---ggv~FrvWAPnA~~V~LiGDFN~W~~~~~~m~~-e~~~~~~~~~f~~~~~~~ 75 (89)
+++|+.||||...+ ++++|++|||+|++|+|+||||+|+...++|.+ ...+ .|++++++-..|
T Consensus 8 ~~~~~~lGa~~~~~~~~~gv~F~vwAP~A~~V~L~gdfn~~~~~~~~M~~~~~~G--vW~~~v~~~~~g 74 (617)
T 1m7x_A 8 LRPYETLGAHADTMDGVTGTRFSVWAPNARRVSVVGQFNYWDGRRHPMRLRKESG--IWELFIPGAHNG 74 (617)
T ss_dssp SCGGGTSEEEEEESSSCEEEEEEEECSSCSCEEEEEGGGTSCTTTCBCCCCTTTT--EEEEEEETCCTT
T ss_pred ccchhcCCceEeccCCcCcEEEEEECCCCCEEEEEEEeCCCCCceeEeEECCCCC--EEEEEEcCCCCC
Confidence 46899999998752 479999999999999999999999988889987 3444 489999975443
No 4
>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A
Probab=99.10 E-value=5.8e-11 Score=77.57 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=31.2
Q ss_pred cEEEEEEccCCeEEEEEeecCCCCCCCCcceecCceeeeeEEEe
Q psy9008 26 SVRCFEWAPSAQQLYLTVYWNEVSKNGERQELESTFLCNAKCFL 69 (89)
Q Consensus 26 gv~FrvWAPnA~~V~LiGDFN~W~~~~~~m~~e~~~~~~~~~f~ 69 (89)
.++| +|||+|++|+|+||||+|+ .++|.+++ . ++++++
T Consensus 12 ~v~F-~wap~a~~V~v~GdFn~W~--~~~m~~~~-g--~w~~~v 49 (96)
T 1z0n_A 12 PTVF-RWTGGGKEVYLSGSFNNWS--KLPMTRSQ-N--NFVAIL 49 (96)
T ss_dssp EEEE-EECSCCSCEEEEEGGGTTC--CEECEEET-T--EEEEEE
T ss_pred EEEE-EECCCCcEEEEEEEeCCCc--cccCEECC-C--EEEEEE
Confidence 4788 9999999999999999999 68888753 2 355665
No 5
>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A*
Probab=98.63 E-value=2.4e-08 Score=82.58 Aligned_cols=57 Identities=16% Similarity=0.079 Sum_probs=47.9
Q ss_pred hcCCeEecCCcEEEEEEccCCeEEEEEeecCCCCCCCCcceecCceeeeeEEEecCCCCC
Q psy9008 16 KYGIHVQADNSVRCFEWAPSAQQLYLTVYWNEVSKNGERQELESTFLCNAKCFLKDNHIG 75 (89)
Q Consensus 16 ~~G~H~~~dggv~FrvWAPnA~~V~LiGDFN~W~~~~~~m~~e~~~~~~~~~f~~~~~~~ 75 (89)
.||+|...+ +++|++|||+|++|.|++++|+|.....+|.+...+ .|++++++...|
T Consensus 105 ~lGa~~~~~-~~~f~vwap~a~~V~l~~~~~~~~~~~~~m~~~~~g--~w~~~v~~~~~g 161 (718)
T 2e8y_A 105 ELGAVYTAD-HTVFKVWAPAATSAAVKLSHPNKSGRTFQMTRLEKG--VYAVTVTGDLHG 161 (718)
T ss_dssp CCEEEECSS-EEEEEEECTTCSEEEEEEECTTSCCEEEECEECGGG--EEEEEEESCCTT
T ss_pred CCCCEEeCC-cEEEEEECCCCCEEEEEEEcCCCcceEEeCccCCCC--EEEEEECCCCCC
Confidence 499998754 599999999999999999999998778899886654 589999976443
No 6
>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A
Probab=98.63 E-value=1.9e-08 Score=80.77 Aligned_cols=52 Identities=15% Similarity=0.179 Sum_probs=43.7
Q ss_pred cCCeEecCCcEEEEEEccCCeEEEEEeecCCCCCCCCcceecCceeeeeEEEecCCCCC
Q psy9008 17 YGIHVQADNSVRCFEWAPSAQQLYLTVYWNEVSKNGERQELESTFLCNAKCFLKDNHIG 75 (89)
Q Consensus 17 ~G~H~~~dggv~FrvWAPnA~~V~LiGDFN~W~~~~~~m~~e~~~~~~~~~f~~~~~~~ 75 (89)
||++...+ +++|++|||+|++|.|+++|| ..++|.++..+ .|++++++-..|
T Consensus 2 lG~~~~~~-~~~f~vwap~a~~v~l~~~~~----~~~~m~~~~~g--~w~~~~~~~~~g 53 (558)
T 3vgf_A 2 FAYKIDGN-EVIFTLWAPYQKSVKLKVLEK----GLYEMERDEKG--YFTITLNNVKVR 53 (558)
T ss_dssp -CEEEETT-EEEEEEECTTCSCCEEEETTT----EEEECEECTTC--EEEEEESSCCTT
T ss_pred CCeEEeCC-cEEEEEECCCCCEEEEEEecC----ceeecccCCCC--EEEEEECCCCCC
Confidence 79999875 699999999999999999998 56789887765 699999986554
No 7
>4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A* 2y5e_A* 2x4b_A
Probab=98.60 E-value=1.9e-08 Score=82.05 Aligned_cols=56 Identities=23% Similarity=0.127 Sum_probs=42.7
Q ss_pred cCCeEecCCcEEEEEEccCCeEEEEEeecCCCCCCCC-cceecCceeeeeEEEecCCCCC
Q psy9008 17 YGIHVQADNSVRCFEWAPSAQQLYLTVYWNEVSKNGE-RQELESTFLCNAKCFLKDNHIG 75 (89)
Q Consensus 17 ~G~H~~~dggv~FrvWAPnA~~V~LiGDFN~W~~~~~-~m~~e~~~~~~~~~f~~~~~~~ 75 (89)
||+|...+ +++|++|||+|++|.|++.+++|.+... +|.++..+ +|++|+++...|
T Consensus 129 lGa~~~~~-g~~F~vwAp~A~~V~l~l~~~~~~~~~~~~~~~~~~g--~W~~~~~~~~~g 185 (884)
T 4aio_A 129 LGAVFSED-SVSLHLWAPTAQGVSVCFFDGPAGPALETVQLKESNG--VWSVTGPREWEN 185 (884)
T ss_dssp CEEEECSS-EEEEEEECTTCSEEEEEEESTTTSCEEEEEECEEETT--EEEEEEEGGGTT
T ss_pred ccCEEECC-EEEEEEECCCCCEEEEEEEeCCCCCeeeeeeecCCCC--EEEEEECCCCCC
Confidence 99998765 5999999999999999998777765433 33333334 589999986654
No 8
>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*
Probab=98.54 E-value=6.5e-08 Score=79.90 Aligned_cols=55 Identities=24% Similarity=0.252 Sum_probs=45.3
Q ss_pred hcCCeEecCCc-EEEEEEccCCeEEEEEe-ecCCCCC--CCCcceecCceeeeeEEEecCC
Q psy9008 16 KYGIHVQADNS-VRCFEWAPSAQQLYLTV-YWNEVSK--NGERQELESTFLCNAKCFLKDN 72 (89)
Q Consensus 16 ~~G~H~~~dgg-v~FrvWAPnA~~V~LiG-DFN~W~~--~~~~m~~e~~~~~~~~~f~~~~ 72 (89)
.||+|...++. ++|++|||+|++|.|++ |+++|.. ...+|.+...+ .|+++|++.
T Consensus 14 ~lGa~~~~~g~gv~F~vwap~A~~V~l~l~~~~~~~~~~~~~~m~~~~~g--vW~~~v~~~ 72 (714)
T 2ya0_A 14 KLGADLKEEGKQVDLTLWSPSADKVSVVVYDKNDPDKVVGTVALEKGERG--TWKQTLDST 72 (714)
T ss_dssp CCEEEEETTTTEEEEEEECTTCSEEEEEEECSSCTTSEEEEEECEECGGG--EEEEEECTT
T ss_pred CCCCEEeCCCCEEEEEEECCCCCEEEEEEEeCCCCCccceEEeCccCCCC--EEEEEECCc
Confidence 49999887654 99999999999999999 9999974 35788876554 599999863
No 9
>2fhf_A Pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, complex with maltotetraose, hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP: b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A* 2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A*
Probab=98.50 E-value=6.8e-08 Score=84.48 Aligned_cols=57 Identities=19% Similarity=0.216 Sum_probs=47.6
Q ss_pred hcCCeEecCCcEEEEEEccCCeEEEEEe-ecCCCCCCCCcceec-CceeeeeEEEecCCCCC
Q psy9008 16 KYGIHVQADNSVRCFEWAPSAQQLYLTV-YWNEVSKNGERQELE-STFLCNAKCFLKDNHIG 75 (89)
Q Consensus 16 ~~G~H~~~dggv~FrvWAPnA~~V~LiG-DFN~W~~~~~~m~~e-~~~~~~~~~f~~~~~~~ 75 (89)
.||+|... ++++|++|||+|++|.|++ |||+|....++|.++ ..+ .|++|+++...|
T Consensus 296 ~lGa~~~~-~gv~F~vwAP~A~~V~L~l~d~~~~~~~~~~m~~~~~~G--vW~~~v~~~~~G 354 (1083)
T 2fhf_A 296 SYGAQLTD-SGVTFRVWAPTAQQVELVIYSADKKVIASHPMTRDSASG--AWSWQGGSDLKG 354 (1083)
T ss_dssp CCEEEEET-TEEEEEEECTTCSEEEEEEECTTCCEEEEEECEECTTTC--EEEEEECGGGTT
T ss_pred CceeEEEC-CeEEEEEECCCCCEEEEEEEcCCCCccceEECeECCCCC--EEEEEECCCCCC
Confidence 69999875 4699999999999999999 999998777889864 344 599999976554
No 10
>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; HET: BGC GLC; 2.25A {Streptococcus pneumoniae}
Probab=98.43 E-value=1.5e-07 Score=81.37 Aligned_cols=54 Identities=24% Similarity=0.254 Sum_probs=44.7
Q ss_pred hcCCeEecCC-cEEEEEEccCCeEEEEEe-ecCCCCC--CCCcceecCceeeeeEEEecC
Q psy9008 16 KYGIHVQADN-SVRCFEWAPSAQQLYLTV-YWNEVSK--NGERQELESTFLCNAKCFLKD 71 (89)
Q Consensus 16 ~~G~H~~~dg-gv~FrvWAPnA~~V~LiG-DFN~W~~--~~~~m~~e~~~~~~~~~f~~~ 71 (89)
.||+|...++ +++|++|||+|++|.|++ ||++|.. ..++|.+...+ .|++||++
T Consensus 321 ~lGa~~~~~g~gv~F~vwAP~A~~V~L~l~d~~~~~~~~~~~~m~~~~~g--vW~~~v~~ 378 (1014)
T 2ya1_A 321 KLGADLKEEGKQVDLTLWSPSADKVSVVVYDKNDPDKVVGTVALEKGERG--TWKQTLDS 378 (1014)
T ss_dssp CCEEEEEGGGTEEEEEEECTTCSEEEEEEECSSCTTSEEEEEECEECGGG--EEEEEECT
T ss_pred CcccEEeCCCCEEEEEEECCCCCEEEEEEEECCCCCccceEEecccCCCC--EEEEEEcc
Confidence 4999988655 499999999999999999 9999974 35788875444 59999986
No 11
>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12}
Probab=98.37 E-value=2.7e-07 Score=75.70 Aligned_cols=57 Identities=18% Similarity=0.174 Sum_probs=43.3
Q ss_pred hhcCCeEecCCcEEEEEEccCCeEEEEEeecCCCCC-CCCcceecCceeeeeEEEecCCCCC
Q psy9008 15 NKYGIHVQADNSVRCFEWAPSAQQLYLTVYWNEVSK-NGERQELESTFLCNAKCFLKDNHIG 75 (89)
Q Consensus 15 ~~~G~H~~~dggv~FrvWAPnA~~V~LiGDFN~W~~-~~~~m~~e~~~~~~~~~f~~~~~~~ 75 (89)
..||+|... ++++|++|||+|++|.|++ |+.+.. ...+|.+...+ .|++|+++-..|
T Consensus 10 ~~lGa~~~~-~g~~F~vwap~A~~V~l~~-f~~~~~~~~~~m~~~~~g--~w~~~v~~~~~g 67 (657)
T 2wsk_A 10 APLGAHYDG-QGVNFTLFSAHAERVELCV-FDANGQEHRYDLPGHSGD--IWHGYLPDARPG 67 (657)
T ss_dssp CSSSEEECS-SEEEEEEECSSCSEEEEEE-ECTTCCEEEEECCEEETT--EEEEEEETCCTT
T ss_pred CCCCcEEeC-CeEEEEEECCCCCEEEEEE-ECCCCCEEEEeCcCCCCC--EEEEEECCCCCC
Confidence 458999865 4699999999999999999 887542 35677754333 588999976544
No 12
>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp}
Probab=98.37 E-value=2.5e-07 Score=75.85 Aligned_cols=54 Identities=17% Similarity=0.157 Sum_probs=43.0
Q ss_pred hcCCeEecCCcEEEEEEccCCeEEEEEeecCCCCCCCCcceecCceeeeeEEEecCCCCCC
Q psy9008 16 KYGIHVQADNSVRCFEWAPSAQQLYLTVYWNEVSKNGERQELESTFLCNAKCFLKDNHIGN 76 (89)
Q Consensus 16 ~~G~H~~~dggv~FrvWAPnA~~V~LiGDFN~W~~~~~~m~~e~~~~~~~~~f~~~~~~~~ 76 (89)
.||+|...+++++|++|||+|++|.|++| | ..++|.+...+ .+++++|+-..|.
T Consensus 33 ~lGa~~~~~~~~~F~vwap~a~~v~l~~~---~--~~~~m~~~~~g--~~~~~~~~~~~g~ 86 (618)
T 3m07_A 33 SWGAEYIAADVVRFRLWATGQQKVMLRLA---G--KDQEMQANGDG--WFTLDVAGVTPGT 86 (618)
T ss_dssp SSEEEEEETTEEEEEEECTTCSCEEEEET---T--EEEECEECSTT--EEEEEEETCCTTC
T ss_pred CCCceEecCCcEEEEEECCCCCEEEEEEC---C--CcccCeecCCE--EEEEEeCCCCCCC
Confidence 59999965667999999999999999983 4 35788876665 5889999865543
No 13
>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}
Probab=98.35 E-value=3e-07 Score=78.60 Aligned_cols=54 Identities=17% Similarity=0.168 Sum_probs=43.6
Q ss_pred cCCeEecCCcEEEEEEccCCeEEEEEeecCCCC---CCCCcceecCceeeeeEEEecCCCC
Q psy9008 17 YGIHVQADNSVRCFEWAPSAQQLYLTVYWNEVS---KNGERQELESTFLCNAKCFLKDNHI 74 (89)
Q Consensus 17 ~G~H~~~dggv~FrvWAPnA~~V~LiGDFN~W~---~~~~~m~~e~~~~~~~~~f~~~~~~ 74 (89)
||+|... ++++|++|||+|++|.|+. ||+|+ ....+|.+...+ .|++++++...
T Consensus 318 lGa~~~~-~gv~F~vwaP~A~~V~l~l-f~~~~~~~~~~~~m~~~~~g--vW~~~v~~~~~ 374 (921)
T 2wan_A 318 LGNVYSK-DATSFRVWAPTASNVQLLL-YNSEKGSITKQLEMQKSDNG--TWKLQVSGNLE 374 (921)
T ss_dssp CEEEECS-SEEEEEEECTTCSEEEEEE-ESSSSSCCSEEEECEECGGG--EEEEEEESCCT
T ss_pred ceeEEEC-CeEEEEEECCCCCEEEEEE-EeCCCCCcCeEEeCeeCCCC--EEEEEEccCCC
Confidence 8899875 4599999999999999996 99995 245688876554 58999997543
No 14
>2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl hydrolase, glycogen debraching; HET: GLC A16; 2.8A {Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A
Probab=98.33 E-value=4.7e-07 Score=75.20 Aligned_cols=57 Identities=12% Similarity=0.096 Sum_probs=43.1
Q ss_pred hcCCeEe-cCCcEEEEEEccCCeEEEEEeecCCCCC----CCCcceecCceeeeeEEEecCCCCC
Q psy9008 16 KYGIHVQ-ADNSVRCFEWAPSAQQLYLTVYWNEVSK----NGERQELESTFLCNAKCFLKDNHIG 75 (89)
Q Consensus 16 ~~G~H~~-~dggv~FrvWAPnA~~V~LiGDFN~W~~----~~~~m~~e~~~~~~~~~f~~~~~~~ 75 (89)
.||+|.. .+++++|++|||+|++|.|++ |+.+.. ...+|.+...+ .|++|+++...|
T Consensus 19 ~lGa~~~~~~~g~~F~vwap~A~~V~l~l-f~~~~~~~~~~~~~m~~~~~g--vw~~~v~~~~~g 80 (718)
T 2vr5_A 19 PLGSNWIEDDDGVNFSLFSENAEKVELLL-YSLTNQKYPKEIIEVKNKTGD--IWHVFVPGLRPG 80 (718)
T ss_dssp SSEEEEEGGGTEEEEEEECSSCSEEEEEE-CCSSCCSSCSEEEEECEESSS--EEEEEEETCCTT
T ss_pred CCcceEeeCCCeEEEEEECCCCCEEEEEE-EcCCCCCCcceEEeCccCCCC--EEEEEeCCCCCC
Confidence 5899984 334699999999999999999 876542 24578765444 589999986654
No 15
>1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=98.24 E-value=5.2e-07 Score=75.27 Aligned_cols=55 Identities=7% Similarity=-0.016 Sum_probs=43.3
Q ss_pred hhcCCeEecCCc--EEEEEEccCCeEEEEEeecCCCCC----CCCcceecCceeeeeEEEecCCC
Q psy9008 15 NKYGIHVQADNS--VRCFEWAPSAQQLYLTVYWNEVSK----NGERQELESTFLCNAKCFLKDNH 73 (89)
Q Consensus 15 ~~~G~H~~~dgg--v~FrvWAPnA~~V~LiGDFN~W~~----~~~~m~~e~~~~~~~~~f~~~~~ 73 (89)
..||+|... ++ ++|++|||+|++|.|+. |+.|+. ..++|.+...+ .|++|+++..
T Consensus 5 ~~lGa~~~~-~g~~~~F~vwap~A~~V~l~l-~~~~~~~~~~~~~~m~~~~~g--vW~~~v~~~~ 65 (750)
T 1bf2_A 5 MSLGASYDA-QQANITFRVYSSQATRIVLYL-YSAGYGVQESATYTLSPAGSG--VWAVTVPVSS 65 (750)
T ss_dssp TCCEEEECT-TSSEEEEEEECSSCSEEEEEE-ESSSSSCCCSEEEECEECSTT--EEEEEEEHHH
T ss_pred cCCCcEEeC-CCCEEEEEEECCCCCEEEEEE-EccCCCCccceEEecccCCCC--EEEEEECCcc
Confidence 468999864 46 99999999999999998 998764 34678765444 5899998654
No 16
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Probab=98.21 E-value=1.1e-06 Score=70.64 Aligned_cols=59 Identities=8% Similarity=-0.013 Sum_probs=43.7
Q ss_pred HhhcCCeEecCC-cEEEEEEccCCeEEEE-EeecCCCCC---CCCcceec---CceeeeeEEEecCCC
Q psy9008 14 YNKYGIHVQADN-SVRCFEWAPSAQQLYL-TVYWNEVSK---NGERQELE---STFLCNAKCFLKDNH 73 (89)
Q Consensus 14 Y~~~G~H~~~dg-gv~FrvWAPnA~~V~L-iGDFN~W~~---~~~~m~~e---~~~~~~~~~f~~~~~ 73 (89)
...||+....+. .++|++|||+|++|+| +||||+|++ ..++|++. +.+.+ |++++++..
T Consensus 11 ~~~~~~~~~~~~~~i~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~~m~~~~~~~~~~~-w~~~i~~~~ 77 (585)
T 1wzl_A 11 KGSYAYPISETQLRVRLRAKKGDVVRCEVLYADRYASPEEELAHALAGKAGSDERFDY-FEALLECST 77 (585)
T ss_dssp STTTEEEEETTEEEEEEEEETTTCSEEEEEEECTTCCTTSCCEEEECEEEEECSSEEE-EEEEEECTT
T ss_pred CCCceeecCCCEEEEEEEECCCCccEEEEEECCCcCCCCCceEEEEEEEeecCCCEEE-EEEEEECCC
Confidence 345666655322 4789999999999999 899999986 46788863 23334 899999864
No 17
>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*
Probab=98.06 E-value=1.7e-06 Score=70.50 Aligned_cols=49 Identities=12% Similarity=0.053 Sum_probs=39.8
Q ss_pred hhcCCeEecCC-cEEEEEEccCCeEEEEEeecCCCCCCCCcceecCceeeeeEEEec
Q psy9008 15 NKYGIHVQADN-SVRCFEWAPSAQQLYLTVYWNEVSKNGERQELESTFLCNAKCFLK 70 (89)
Q Consensus 15 ~~~G~H~~~dg-gv~FrvWAPnA~~V~LiGDFN~W~~~~~~m~~e~~~~~~~~~f~~ 70 (89)
..||+|...++ +++|++|||+|++|.|++| ...++|.+...+ .|+++++
T Consensus 23 ~~lGa~~~~~~~~~~f~vwap~a~~v~l~~~-----~~~~~m~~~~~g--~w~~~~~ 72 (602)
T 2bhu_A 23 TRLGATPLPGGAGTRFRLWTSTARTVAVRVN-----GTEHVMTSLGGG--IYELELP 72 (602)
T ss_dssp GCSEEEECGGGCCEEEEEECSSCSSEEEEET-----TEEEECEEEETT--EEEEEES
T ss_pred CCCceEEeCCCCeEEEEEECCCCCEEEEEEc-----CCEEeCeeCCCc--EEEEEEE
Confidence 46999998754 7999999999999999996 246788876444 4889998
No 18
>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A*
Probab=98.00 E-value=3e-06 Score=72.73 Aligned_cols=53 Identities=15% Similarity=0.209 Sum_probs=42.7
Q ss_pred hcCCeEecCC-cEEEEEEccCCeEEEEEe-ecCCCCC--CCCcceecCceeeeeEEEec
Q psy9008 16 KYGIHVQADN-SVRCFEWAPSAQQLYLTV-YWNEVSK--NGERQELESTFLCNAKCFLK 70 (89)
Q Consensus 16 ~~G~H~~~dg-gv~FrvWAPnA~~V~LiG-DFN~W~~--~~~~m~~e~~~~~~~~~f~~ 70 (89)
.||++...+| ++.|++|||+|++|.|+. |+++|.. ...+|.+...+ .|+++|+
T Consensus 134 ~lGa~~~~~g~~v~F~vwAP~A~~V~L~l~d~~~~~~~~~~~~m~~~~~g--vW~~~v~ 190 (877)
T 3faw_A 134 NLGAVLNQDGSKVEASLWSPSADSVTMIIYDKDNQNRVVATTPLVKNNKG--VWQTILD 190 (877)
T ss_dssp CCEEEECTTSSCEEEEEECTTCSEEEEEEEETTEEEEEEEEEECEECTTS--EEEEEEC
T ss_pred CCCCEEeCCCCEEEEEEECCCCCEEEEEEEeCCCCccceeeeccccCCCC--EEEEEEC
Confidence 3899998766 399999999999999997 8998863 35678876555 5899984
No 19
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Probab=97.78 E-value=1.8e-05 Score=63.55 Aligned_cols=47 Identities=9% Similarity=-0.178 Sum_probs=36.8
Q ss_pred cEEEEEEccCCeEEEE-EeecCCCCC-----CCCcceecC---ceeeeeEEEecCCC
Q psy9008 26 SVRCFEWAPSAQQLYL-TVYWNEVSK-----NGERQELES---TFLCNAKCFLKDNH 73 (89)
Q Consensus 26 gv~FrvWAPnA~~V~L-iGDFN~W~~-----~~~~m~~e~---~~~~~~~~f~~~~~ 73 (89)
.++||+|||+|++|+| +||||+|++ ...+|++.. .+.. |++++++..
T Consensus 24 ~i~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~-w~~~v~~~~ 79 (588)
T 1j0h_A 24 HLRLRTKKDDIDRVELLHGDPYDWQNGAWQFQMMPMRKTGSDELFDY-WFAEVKPPY 79 (588)
T ss_dssp EEEEEEETTTCSEEEEEEECTTCEETTEECCEEEECEEEEECSSEEE-EEEEECCTT
T ss_pred EEEEEECCCCccEEEEEECCCCCccccccceEEEEeEEeecCCCeEE-EEEEEECCC
Confidence 4788999999999999 799999976 467888643 2333 889998754
No 20
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=97.76 E-value=5.6e-06 Score=66.56 Aligned_cols=47 Identities=9% Similarity=-0.103 Sum_probs=36.6
Q ss_pred cEEEEEEccCCeEEEE-EeecCCCCC--CCCcceecC---ceeeeeEEEecCCC
Q psy9008 26 SVRCFEWAPSAQQLYL-TVYWNEVSK--NGERQELES---TFLCNAKCFLKDNH 73 (89)
Q Consensus 26 gv~FrvWAPnA~~V~L-iGDFN~W~~--~~~~m~~e~---~~~~~~~~f~~~~~ 73 (89)
.++|++|||+|++|.| +||||+|+. ..++|++.. .+.+ |++++++..
T Consensus 24 ~~~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~M~~~~~~~~~~~-w~~~i~~~~ 76 (583)
T 1ea9_C 24 HLRIRTKKDDMTAVYALAGDKYMWDHTMEYVPMTKLATDELFDY-WECEVTPPY 76 (583)
T ss_dssp ECCCEECTTCCSBEEEEEECSSSCTTTCEEEEECEEEECSSCEE-ECCEECCTT
T ss_pred EEEEEECCCCccEEEEEECCCcCCCCcEEEEEEEEEeccCCeEE-EEEEEECCC
Confidence 3568999999999999 799999986 567887632 2333 888998764
No 21
>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A
Probab=97.70 E-value=4e-05 Score=62.14 Aligned_cols=54 Identities=9% Similarity=-0.153 Sum_probs=40.3
Q ss_pred cCCeEecCCcEEEEEE----ccCCeEEEEEeecCCCCCCCCccee---c--CceeeeeEEEecCCCC
Q psy9008 17 YGIHVQADNSVRCFEW----APSAQQLYLTVYWNEVSKNGERQEL---E--STFLCNAKCFLKDNHI 74 (89)
Q Consensus 17 ~G~H~~~dggv~FrvW----APnA~~V~LiGDFN~W~~~~~~m~~---e--~~~~~~~~~f~~~~~~ 74 (89)
+|+ ..+++++|++| ||+|++|.|+++||+ +....+|.+ . ..+. .|++++++-..
T Consensus 24 ~Ga--~~~~~v~f~v~~~~~ap~a~~V~l~~~~~~-~~~~~~m~~~~~~~~~~~~-~w~~~i~~~~~ 86 (637)
T 1ji1_A 24 PEP--TSTQSVTLKLRTFKGDITSANIKYWDTADN-AFHWVPMVWDSNDPTGTFD-YWKGTIPASPS 86 (637)
T ss_dssp SSC--CTTCCEEEEEEEETTCCSEEEEEEEETTTT-EEEEEECEEEEECTTSSEE-EEEEEECCCSS
T ss_pred CCC--CCCCEEEEEEEEecCcCCeeEEEEEEecCC-CEEEEEeEEeeccccCCee-EEEEEEECCCc
Confidence 587 33457999999 999999999999874 444578877 2 2333 49999997653
No 22
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus}
Probab=97.58 E-value=8.6e-05 Score=60.97 Aligned_cols=39 Identities=15% Similarity=0.122 Sum_probs=32.3
Q ss_pred cEEEEEEccC-CeEEEEEeecCCCCCCCCccee-cCceeee
Q psy9008 26 SVRCFEWAPS-AQQLYLTVYWNEVSKNGERQEL-ESTFLCN 64 (89)
Q Consensus 26 gv~FrvWAPn-A~~V~LiGDFN~W~~~~~~m~~-e~~~~~~ 64 (89)
.|+|+.=+|. |++|+|+||||+|++..++|.+ .+.|.+.
T Consensus 19 ~v~f~~~~~~~~~~v~~~G~Fn~w~~~~~~~~~~~~~~~~~ 59 (696)
T 4aee_A 19 IVKFTRHWPQYAKNIYLIGEFTSLYPGFVKLRKIEEQGIVY 59 (696)
T ss_dssp EEEEEEECCTTCSCEEEEETTSCSSTTSCBCEEETTEEEEE
T ss_pred EEEEEEECCCCCcEEEEEEecCCCCCCCcceEecCCeEEEE
Confidence 3889988885 9999999999999999999875 6666543
No 23
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}
Probab=97.44 E-value=7.5e-05 Score=56.13 Aligned_cols=32 Identities=6% Similarity=-0.185 Sum_probs=27.8
Q ss_pred CcEEEEEEccCCeEEEEEeecCCCCCCCCccee
Q psy9008 25 NSVRCFEWAPSAQQLYLTVYWNEVSKNGERQEL 57 (89)
Q Consensus 25 ggv~FrvWAPnA~~V~LiGDFN~W~~~~~~m~~ 57 (89)
..++|+..+|.|++|+|+|+||+|+ ...+|.+
T Consensus 170 ~~v~f~~~~~~~~~V~v~GsF~~W~-~~~~l~k 201 (294)
T 3nme_A 170 KTVTLTLKDKGFSRVEISGLDIGWG-QRIPLTL 201 (294)
T ss_dssp EEEEEEEECSSCSCEEEEETTTEEE-EEEECEE
T ss_pred ccceeeeccCCCCEEEEEEeccCCC-CcccceE
Confidence 3589999999999999999999998 3467777
No 24
>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}
Probab=97.39 E-value=0.00014 Score=58.92 Aligned_cols=46 Identities=20% Similarity=0.153 Sum_probs=32.8
Q ss_pred HhhcCCeEecC-CcEEEEE--EccCCeEEEEEeecCCCCCCCCcceecC
Q psy9008 14 YNKYGIHVQAD-NSVRCFE--WAPSAQQLYLTVYWNEVSKNGERQELES 59 (89)
Q Consensus 14 Y~~~G~H~~~d-ggv~Frv--WAPnA~~V~LiGDFN~W~~~~~~m~~e~ 59 (89)
|+.+|.....- |.+...+ +...++.|+|+||||+|++.+++|++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~G~Fn~w~~~~~~m~~~g 50 (645)
T 4aef_A 2 YKLVSFRDSEIFGRVAEVEFSLIREGSYAYLLGDFNAFNEGSFRMEQEG 50 (645)
T ss_dssp EEEEEEEEETTTEEEEEEEEEEECCSSCEEEEETTTTTCTTSSEEEECS
T ss_pred cceeeeeEcCccceEEEEEEecCCCCeEEEEEEcCCCCCCCcccceEcC
Confidence 56666655432 3333222 5667788999999999999999998766
No 25
>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1
Probab=97.02 E-value=0.00053 Score=51.51 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=23.2
Q ss_pred EEEccCCeEEEEEeecCCCCCCCCccee
Q psy9008 30 FEWAPSAQQLYLTVYWNEVSKNGERQEL 57 (89)
Q Consensus 30 rvWAPnA~~V~LiGDFN~W~~~~~~m~~ 57 (89)
-.|.+.|++|+|+|+||+|++. .+|.+
T Consensus 8 f~W~~~a~~V~V~GsF~~W~~~-~~m~k 34 (252)
T 2qlv_B 8 IRWQQGGSKVYVTGSFTKWRKM-IGLIP 34 (252)
T ss_dssp EEECSCCSCEEEEEGGGTTSSC-EECEE
T ss_pred EEEeCCCcEEEEEEEeCCCcCc-cccee
Confidence 4699999999999999999865 56776
No 26
>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens}
Probab=92.20 E-value=0.38 Score=32.27 Aligned_cols=33 Identities=6% Similarity=-0.158 Sum_probs=26.2
Q ss_pred cEEEEEEccC--CeEEEEEee---cCCCCCC-CCcceec
Q psy9008 26 SVRCFEWAPS--AQQLYLTVY---WNEVSKN-GERQELE 58 (89)
Q Consensus 26 gv~FrvWAPn--A~~V~LiGD---FN~W~~~-~~~m~~e 58 (89)
.++|++-+|- .+.|+|+|| |.+|++. +.+|...
T Consensus 10 ~V~F~v~~~~~~ge~v~vvGs~~~LG~W~p~~av~L~~~ 48 (131)
T 2z0b_A 10 QVAFEIRGTLLPGEVFAICGSCDALGNWNPQNAVALLPE 48 (131)
T ss_dssp EEEEEEECCCCTTCEEEEEESSGGGTTTCGGGCEECEEC
T ss_pred EEEEEEeeecCCCCEEEEEeCCCcCCCCCcccccccccc
Confidence 4899999875 478999999 9999975 4466653
No 27
>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis}
Probab=87.16 E-value=0.38 Score=40.53 Aligned_cols=51 Identities=14% Similarity=-0.007 Sum_probs=35.0
Q ss_pred HHhhcCCeEecCCcEEEEEEccCCeEEEEEeecCCCCCCCCcceecCceeeeeEEEecC
Q psy9008 13 SYNKYGIHVQADNSVRCFEWAPSAQQLYLTVYWNEVSKNGERQELESTFLCNAKCFLKD 71 (89)
Q Consensus 13 ~Y~~~G~H~~~dggv~FrvWAPnA~~V~LiGDFN~W~~~~~~m~~e~~~~~~~~~f~~~ 71 (89)
=+..+|.|... +++..|+|.|.|++|.|+- .....+|++...+ .+.+-+|.
T Consensus 21 p~~~lg~h~~~-~~~~~~~~~p~a~~~~~~~-----~~~~~~~~~~~~~--~~~~~~~~ 71 (722)
T 3k1d_A 21 PHGILGAHEYD-DHTVIRAFRPHAVEVVALV-----GKDRFSLQHLDSG--LFAVALPF 71 (722)
T ss_dssp HHHHSEEEESS-SSEEEEEECTTCSBCCEEB-----TTBCCCCCCCTTS--EEECCCSC
T ss_pred cHHhcCceECC-CCEEEEEECCCCcEEEEEe-----CCeEEeeEecCCC--eEEeecCC
Confidence 35679999875 4599999999999999984 2334567654433 24455553
No 28
>1ac0_A Glucoamylase; hydrolase, starch binding domain; HET: GLC BGC GLO; NMR {Aspergillus niger} SCOP: b.3.1.1 PDB: 1acz_A* 1kul_A 1kum_A
Probab=80.81 E-value=1.6 Score=27.64 Aligned_cols=33 Identities=15% Similarity=0.138 Sum_probs=24.8
Q ss_pred cEEEEEEccC--CeEEEEEee---cCCCCCC-CCcceec
Q psy9008 26 SVRCFEWAPS--AQQLYLTVY---WNEVSKN-GERQELE 58 (89)
Q Consensus 26 gv~FrvWAPn--A~~V~LiGD---FN~W~~~-~~~m~~e 58 (89)
.++|++=+|- .+.|+|+|+ +.+|++. +.+|...
T Consensus 8 ~V~F~v~~~t~~Ge~v~vvGs~~~LG~W~~~~a~~l~~~ 46 (108)
T 1ac0_A 8 AVTFDLTATTTYGENIYLVGSISQLGDWETSDGIALSAD 46 (108)
T ss_dssp CEEEEEECCCCSSCCEECCCSSSTTCSSSGGGSCCBBCS
T ss_pred EEEEEEeeECCCCCEEEEEeCcHHHCCCCHHHCcccccc
Confidence 4889998763 478999997 5699975 5577654
No 29
>4fch_A Outer membrane protein SUSE; starch binding, extracellular, carbohydrate-B protein; HET: GLC; 1.30A {Bacteroides thetaiotaomicron}
Probab=72.89 E-value=3.2 Score=29.33 Aligned_cols=44 Identities=2% Similarity=-0.102 Sum_probs=26.7
Q ss_pred EEEEccCCeEEEEEeecCCCCCC-CCcceec--CceeeeeEEEecCC
Q psy9008 29 CFEWAPSAQQLYLTVYWNEVSKN-GERQELE--STFLCNAKCFLKDN 72 (89)
Q Consensus 29 FrvWAPnA~~V~LiGDFN~W~~~-~~~m~~e--~~~~~~~~~f~~~~ 72 (89)
.....+--+++||+|++++|+.. +.+|... ..+..-+..||+++
T Consensus 5 ~~~~~~~p~~lY~vG~~~gW~~~~~~~m~~~~~~~g~y~~~~yl~ag 51 (221)
T 4fch_A 5 STSSLTPPKTMFIVGSMLDTDWKVWKPMAGVYGMDGQFYSMIYFDAN 51 (221)
T ss_dssp ----CCCCSCCEEEETTTCTTSCCEEECEECTTCTTEEEEEEEECTT
T ss_pred ccCCCCCcceEEEEecCCCCCCCccceeeeccCCCceEEEEEEEcCC
Confidence 34445556789999999999843 4456542 23333567777754
No 30
>3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A*
Probab=67.10 E-value=14 Score=27.72 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=29.2
Q ss_pred HHHHHHHHhhcCCeEec-----CCcEEEEEEccCC-------eEEEEEeecCCCCCC-----CCccee
Q psy9008 7 IEKFTTSYNKYGIHVQA-----DNSVRCFEWAPSA-------QQLYLTVYWNEVSKN-----GERQEL 57 (89)
Q Consensus 7 L~~fa~~Y~~~G~H~~~-----dggv~FrvWAPnA-------~~V~LiGDFN~W~~~-----~~~m~~ 57 (89)
.+.|=+. ..| ...+ +..|+|+.-||.| ++|+|. +|.|..+ ..+|++
T Consensus 11 ~~~~w~~--~~g-P~~~~~~~~~~~vtF~~~~p~a~~~~~~~~~V~~~--~~~~~d~~~~~~~~~m~r 73 (403)
T 3c8d_A 11 SESWWQS--KHG-PEWQRLNDEMFEVTFWWRDPQGSEEYSTIKRVWVY--ITGVTDHHQNSQPQSMQR 73 (403)
T ss_dssp SHHHHHT--CCS-CEEEECCSSEEEEEEEEECTTCSTTTCCCCEEEEE--ETTTC-------CCBCEE
T ss_pred hHHHHhc--CCC-CEEeecCCCcEEEEEEeeCCCcccccCccceEEEE--CcCCCccccccCcccccc
Confidence 4555333 566 5543 2369999999999 899997 4665432 235776
No 31
>4fe9_A Outer membrane protein SUSF; starch binding, IG fold, extracellular surface, outermembran carbohydrate-binding protein; HET: GLC BGC MTT; 2.00A {Bacteroides thetaiotaomicron}
Probab=64.98 E-value=3.3 Score=32.03 Aligned_cols=21 Identities=10% Similarity=0.162 Sum_probs=15.6
Q ss_pred eEEEEEeecCCCCCC-CCccee
Q psy9008 37 QQLYLTVYWNEVSKN-GERQEL 57 (89)
Q Consensus 37 ~~V~LiGDFN~W~~~-~~~m~~ 57 (89)
...||+||+|+|+.. +.+|.+
T Consensus 151 ~~~YlvG~~~gW~~~~~~~~~~ 172 (470)
T 4fe9_A 151 DGYYIVGDFTGWDGNSAQQMKK 172 (470)
T ss_dssp TCEEEEETTTCSSGGGCEECEE
T ss_pred ceeEEEcccCCCCcccCeeeee
Confidence 457999999999854 445554
No 32
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=64.48 E-value=3.1 Score=28.78 Aligned_cols=14 Identities=14% Similarity=0.126 Sum_probs=11.6
Q ss_pred eEEEEEeecCCCCC
Q psy9008 37 QQLYLTVYWNEVSK 50 (89)
Q Consensus 37 ~~V~LiGDFN~W~~ 50 (89)
..|.|+||||.|..
T Consensus 161 ~~vil~GDfN~~~~ 174 (260)
T 2a40_B 161 NDVMLMGDFNADCS 174 (260)
T ss_dssp CCEEEEEECCCSTT
T ss_pred CCEEEEecCCCCCc
Confidence 45889999999854
No 33
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=62.82 E-value=3.3 Score=31.08 Aligned_cols=12 Identities=8% Similarity=0.036 Sum_probs=10.9
Q ss_pred eEEEEEeecCCC
Q psy9008 37 QQLYLTVYWNEV 48 (89)
Q Consensus 37 ~~V~LiGDFN~W 48 (89)
..+.|.||||.|
T Consensus 170 ~~~ii~GDFN~~ 181 (261)
T 1sr4_B 170 YSWMVVGDFNRA 181 (261)
T ss_dssp CEEEEEEECSSC
T ss_pred CcEEEEeeCCCC
Confidence 578899999999
No 34
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=59.78 E-value=6.6 Score=27.08 Aligned_cols=16 Identities=6% Similarity=-0.008 Sum_probs=12.5
Q ss_pred CeEEEEEeecCCCCCC
Q psy9008 36 AQQLYLTVYWNEVSKN 51 (89)
Q Consensus 36 A~~V~LiGDFN~W~~~ 51 (89)
...|.|.||||.+...
T Consensus 187 ~~pvIl~GDfN~~~~~ 202 (301)
T 1zwx_A 187 DEIIFIGGDLNVNYGT 202 (301)
T ss_dssp TSEEEEEEECCCCTTS
T ss_pred CCeEEEEeeCCCCCCc
Confidence 3568999999988644
No 35
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=54.68 E-value=6.4 Score=27.13 Aligned_cols=14 Identities=7% Similarity=-0.095 Sum_probs=11.5
Q ss_pred CeEEEEEeecCCCC
Q psy9008 36 AQQLYLTVYWNEVS 49 (89)
Q Consensus 36 A~~V~LiGDFN~W~ 49 (89)
...|.|.||||.+.
T Consensus 187 ~~pvil~GDfN~~~ 200 (306)
T 2ddr_A 187 NEYVLIGGDMNVNK 200 (306)
T ss_dssp TSCEEEEEECCCCC
T ss_pred CCEEEEEeeCCCCc
Confidence 34689999999986
No 36
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=54.67 E-value=6.3 Score=28.38 Aligned_cols=17 Identities=12% Similarity=0.104 Sum_probs=12.8
Q ss_pred CCeEEEEEeecCCCCCC
Q psy9008 35 SAQQLYLTVYWNEVSKN 51 (89)
Q Consensus 35 nA~~V~LiGDFN~W~~~ 51 (89)
....|.|.||||.+...
T Consensus 205 ~~~pvIl~GDfN~~~~s 221 (317)
T 3i41_A 205 KDETVYIGGDLNVNKGT 221 (317)
T ss_dssp TTSCEEEEEECCCCTTS
T ss_pred CCCeEEEEeECCCCCCC
Confidence 34468999999998643
No 37
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=51.63 E-value=7.1 Score=25.93 Aligned_cols=14 Identities=21% Similarity=0.116 Sum_probs=10.8
Q ss_pred eEEEEEeecCCCCC
Q psy9008 37 QQLYLTVYWNEVSK 50 (89)
Q Consensus 37 ~~V~LiGDFN~W~~ 50 (89)
..|.|.||||.+..
T Consensus 139 ~~~il~GDFN~~~~ 152 (256)
T 2jc4_A 139 GKLVLLGDFNIAPA 152 (256)
T ss_dssp SSEEEEEECCCCCS
T ss_pred CCEEEEeECCCCCc
Confidence 34788999998753
No 38
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=51.10 E-value=9.7 Score=24.19 Aligned_cols=12 Identities=8% Similarity=-0.246 Sum_probs=9.5
Q ss_pred eEEEEEeecCCC
Q psy9008 37 QQLYLTVYWNEV 48 (89)
Q Consensus 37 ~~V~LiGDFN~W 48 (89)
.-|.|.||||..
T Consensus 145 ~pvIl~GDfN~~ 156 (250)
T 4f1h_A 145 AIVIFAGDTNLR 156 (250)
T ss_dssp EEEEEEEECCCC
T ss_pred CCEEEEEecCCC
Confidence 458899999954
No 39
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=49.16 E-value=9.6 Score=25.61 Aligned_cols=13 Identities=23% Similarity=0.064 Sum_probs=10.8
Q ss_pred EEEEEeecCCCCC
Q psy9008 38 QLYLTVYWNEVSK 50 (89)
Q Consensus 38 ~V~LiGDFN~W~~ 50 (89)
.|.|.||||.+..
T Consensus 160 pvil~GDfN~~~~ 172 (257)
T 3l1w_A 160 PTLLMGDFNAESG 172 (257)
T ss_dssp CEEEEEECCCCTT
T ss_pred CEEEEeeCCCCCC
Confidence 5889999998754
No 40
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=48.15 E-value=10 Score=24.75 Aligned_cols=15 Identities=13% Similarity=0.054 Sum_probs=11.0
Q ss_pred cCCeEEEEEeecCCC
Q psy9008 34 PSAQQLYLTVYWNEV 48 (89)
Q Consensus 34 PnA~~V~LiGDFN~W 48 (89)
|....|.|.||||..
T Consensus 148 ~~~~pvIl~GDfN~~ 162 (256)
T 4gz1_A 148 PDSTTVIFAGDTNLR 162 (256)
T ss_dssp CTTSEEEEEEECCCC
T ss_pred cCcceEEEeCccCCC
Confidence 334568899999954
No 41
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=46.08 E-value=20 Score=25.05 Aligned_cols=22 Identities=9% Similarity=-0.022 Sum_probs=16.8
Q ss_pred EEEEEccCC-------------------eEEEEEeecCCCC
Q psy9008 28 RCFEWAPSA-------------------QQLYLTVYWNEVS 49 (89)
Q Consensus 28 ~FrvWAPnA-------------------~~V~LiGDFN~W~ 49 (89)
.+.+|+|+. +.+.|.||||-|.
T Consensus 92 i~svY~P~~~~~~~~~~~l~~l~~~~~~~~~Ii~GDfN~~~ 132 (240)
T 2ei9_A 92 MVSAYFQYSDPIDPYLHRLGNILDRLRGARVVICADTNAHS 132 (240)
T ss_dssp EEEEECCTTSCSHHHHHHHHHHHHHTTTSCEEEEEECCCCC
T ss_pred EEEEEcCCCCchhHHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 466788876 3578899999764
No 42
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=45.78 E-value=5 Score=26.36 Aligned_cols=41 Identities=7% Similarity=-0.035 Sum_probs=23.5
Q ss_pred CCeEEEEEeecCCCCCCCC----cce-ecCceeeeeEEEecCCCCCCC
Q psy9008 35 SAQQLYLTVYWNEVSKNGE----RQE-LESTFLCNAKCFLKDNHIGNG 77 (89)
Q Consensus 35 nA~~V~LiGDFN~W~~~~~----~m~-~e~~~~~~~~~f~~~~~~~~~ 77 (89)
.+..|.+.||+-+...... .+. ..... .-..+++||||-..
T Consensus 32 ~~D~vi~~GDl~~~~~~~~~~~~~~~~l~~~~--~pv~~v~GNHD~~~ 77 (228)
T 1uf3_A 32 GADAIALIGNLMPKAAKSRDYAAFFRILSEAH--LPTAYVPGPQDAPI 77 (228)
T ss_dssp TCSEEEEESCSSCTTCCHHHHHHHHHHHGGGC--SCEEEECCTTSCSH
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHhcC--CcEEEECCCCCchh
Confidence 5678999999865432111 111 11111 23578999999653
No 43
>1xm7_A Hypothetical protein AQ_1665; structural genomics, protein structure initi midwest center for structural genomics, PSI, MCSG, unknown; 2.40A {Aquifex aeolicus} SCOP: d.159.1.8
Probab=45.29 E-value=8.4 Score=25.68 Aligned_cols=39 Identities=13% Similarity=0.045 Sum_probs=23.2
Q ss_pred cCCeEEEEEeecCCCCCCCC----cceecCceeeeeEEEecCCCCCC
Q psy9008 34 PSAQQLYLTVYWNEVSKNGE----RQELESTFLCNAKCFLKDNHIGN 76 (89)
Q Consensus 34 PnA~~V~LiGDFN~W~~~~~----~m~~e~~~~~~~~~f~~~~~~~~ 76 (89)
+.+..|.+.||+-+-.+... .+.+-+ .-..+++||||..
T Consensus 42 ~~~D~vi~~GDl~~~~~~~~~~~~~l~~l~----~~~~~v~GNhD~~ 84 (195)
T 1xm7_A 42 KPEDTLYHLGDFTWHFNDKNEYLRIWKALP----GRKILVMGNHDKD 84 (195)
T ss_dssp CTTCEEEECSCCBSCSCCTTSHHHHHHHSS----SEEEEECCTTCCC
T ss_pred CCCCEEEECCCCCCCchhHHHHHHHHHHCC----CCEEEEeCCCCCc
Confidence 67889999999864311111 111111 1257899999964
No 44
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=42.15 E-value=12 Score=25.20 Aligned_cols=12 Identities=25% Similarity=0.011 Sum_probs=10.0
Q ss_pred EEEEEeecCCCC
Q psy9008 38 QLYLTVYWNEVS 49 (89)
Q Consensus 38 ~V~LiGDFN~W~ 49 (89)
.+.|.||||-|.
T Consensus 148 ~~Ii~GDfN~~~ 159 (245)
T 1wdu_A 148 RLIFGGDANAKS 159 (245)
T ss_dssp SEEEEEECCCCC
T ss_pred cEEEEeccccCc
Confidence 478999999874
No 45
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=39.60 E-value=15 Score=25.69 Aligned_cols=14 Identities=21% Similarity=-0.007 Sum_probs=11.2
Q ss_pred eEEEEEeecCCCCC
Q psy9008 37 QQLYLTVYWNEVSK 50 (89)
Q Consensus 37 ~~V~LiGDFN~W~~ 50 (89)
.-|.|.||||.+..
T Consensus 171 ~pvIl~GDfN~~~~ 184 (298)
T 3mpr_A 171 LPAILTGDFNVDQT 184 (298)
T ss_dssp CCEEEEEECSSCTT
T ss_pred CcEEEEEeCCCCCC
Confidence 45889999998754
No 46
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=39.01 E-value=17 Score=24.21 Aligned_cols=13 Identities=15% Similarity=-0.020 Sum_probs=10.9
Q ss_pred eEEEEEeecCCCC
Q psy9008 37 QQLYLTVYWNEVS 49 (89)
Q Consensus 37 ~~V~LiGDFN~W~ 49 (89)
..|.|.||||.+.
T Consensus 169 ~~~il~GDfN~~~ 181 (266)
T 3teb_A 169 NLKILMGDFNTDA 181 (266)
T ss_dssp CEEEEEEECCCCT
T ss_pred CcEEEEeECCCCC
Confidence 4688999999985
No 47
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=38.19 E-value=13 Score=24.17 Aligned_cols=10 Identities=10% Similarity=0.112 Sum_probs=8.7
Q ss_pred EEEEEeecCC
Q psy9008 38 QLYLTVYWNE 47 (89)
Q Consensus 38 ~V~LiGDFN~ 47 (89)
.+.|.||||.
T Consensus 139 ~~Il~GDFN~ 148 (238)
T 1vyb_A 139 HTLIMGDFNT 148 (238)
T ss_dssp TEEEEEECSS
T ss_pred CEEEEccCCC
Confidence 4788999997
No 48
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=37.23 E-value=18 Score=24.44 Aligned_cols=13 Identities=15% Similarity=0.084 Sum_probs=10.4
Q ss_pred eEEEEEeecCCCC
Q psy9008 37 QQLYLTVYWNEVS 49 (89)
Q Consensus 37 ~~V~LiGDFN~W~ 49 (89)
..|.|.||||.+.
T Consensus 165 ~pvIl~GDfN~~~ 177 (267)
T 3g6s_A 165 RPAVVTGDFNVTD 177 (267)
T ss_dssp SCEEEEEECSSCT
T ss_pred CCEEEEeECCCCC
Confidence 4588999999864
No 49
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=36.46 E-value=15 Score=24.48 Aligned_cols=12 Identities=8% Similarity=-0.067 Sum_probs=9.6
Q ss_pred eEEEEEeecCCC
Q psy9008 37 QQLYLTVYWNEV 48 (89)
Q Consensus 37 ~~V~LiGDFN~W 48 (89)
..|.|.||||..
T Consensus 144 ~~~Il~GDFN~~ 155 (268)
T 1ako_A 144 NPVLIMGDMNIS 155 (268)
T ss_dssp SCEEEEEECCCC
T ss_pred CCEEEEeECCCC
Confidence 358899999965
No 50
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=36.43 E-value=15 Score=24.33 Aligned_cols=11 Identities=18% Similarity=0.444 Sum_probs=9.1
Q ss_pred eEEEEEeecCC
Q psy9008 37 QQLYLTVYWNE 47 (89)
Q Consensus 37 ~~V~LiGDFN~ 47 (89)
..|.|.||||.
T Consensus 142 ~~~Il~GDFN~ 152 (259)
T 2jc5_A 142 RDIVVCGDWNI 152 (259)
T ss_dssp SEEEEEEECCC
T ss_pred CCEEEEeeCCC
Confidence 35788999997
No 51
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=33.85 E-value=17 Score=24.18 Aligned_cols=11 Identities=9% Similarity=-0.332 Sum_probs=8.7
Q ss_pred eEEEEEeecCC
Q psy9008 37 QQLYLTVYWNE 47 (89)
Q Consensus 37 ~~V~LiGDFN~ 47 (89)
..|.|.||||.
T Consensus 139 ~p~Il~GDFN~ 149 (257)
T 2voa_A 139 SFAVWCGDMNV 149 (257)
T ss_dssp SCEEEEEECSC
T ss_pred CCEEEEeeCCC
Confidence 34788999994
No 52
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP: d.159.1.5 PDB: 2gju_A
Probab=33.32 E-value=3.8 Score=28.06 Aligned_cols=39 Identities=3% Similarity=-0.111 Sum_probs=22.7
Q ss_pred CCeEEEEEeecCCCCCCCCc----ceecCceeeeeEEEecCCCCC
Q psy9008 35 SAQQLYLTVYWNEVSKNGER----QELESTFLCNAKCFLKDNHIG 75 (89)
Q Consensus 35 nA~~V~LiGDFN~W~~~~~~----m~~e~~~~~~~~~f~~~~~~~ 75 (89)
.+..|.+.||+-+..+.+.. +..-..- .-..+++||||-
T Consensus 33 ~~d~ii~~GD~~~~g~~~~~~~~~l~~l~~~--~~~~~v~GNhD~ 75 (252)
T 1nnw_A 33 EIEKYYILGNIVGLFPYPKEVIEVIKDLTKK--ENVKIIRGKYDQ 75 (252)
T ss_dssp CEEEEEEESCSSSSSSCHHHHHHHHHHHHHH--SCEEEECCHHHH
T ss_pred CCCEEEEeCccCCCCCCHHHHHHHHHhhHhh--cCeeEEecchHH
Confidence 56789999999876543211 1110000 124679999984
No 53
>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}
Probab=32.90 E-value=67 Score=25.69 Aligned_cols=41 Identities=5% Similarity=-0.146 Sum_probs=28.6
Q ss_pred EEEEEEccCCeEEEEEeecCCCCCCCCccee---cCceeeeeEEEecCCCC
Q psy9008 27 VRCFEWAPSAQQLYLTVYWNEVSKNGERQEL---ESTFLCNAKCFLKDNHI 74 (89)
Q Consensus 27 v~FrvWAPnA~~V~LiGDFN~W~~~~~~m~~---e~~~~~~~~~f~~~~~~ 74 (89)
++|+...+.+.+|.|+++ ...||.+ ++.|.. |+++|++...
T Consensus 127 ~r~~~~~~~~~~~~~~~~------~~~~m~~~~~~~~~d~-w~~~v~~~~~ 170 (645)
T 4aef_A 127 VLLRTQKGVIKGATFLGE------KHVPMRKKASDELFDY-FEVIVEGGDK 170 (645)
T ss_dssp EEEEEETTTEEEEEEESS------SEEECEEEEECSSEEE-EEEEEECSCS
T ss_pred EEEEcccCCcceEEEeCC------CEEEEEEEecCCCeEE-EEEEEECCCC
Confidence 567777788999999964 4567765 344433 7888887654
No 54
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=31.95 E-value=19 Score=24.60 Aligned_cols=11 Identities=27% Similarity=0.087 Sum_probs=8.9
Q ss_pred eEEEEEeecCC
Q psy9008 37 QQLYLTVYWNE 47 (89)
Q Consensus 37 ~~V~LiGDFN~ 47 (89)
..|.|+||||-
T Consensus 170 ~p~Il~GDFN~ 180 (285)
T 2o3h_A 170 KPLVLCGDLNV 180 (285)
T ss_dssp SCEEEEEECSC
T ss_pred CCEEEEEECCC
Confidence 35789999995
No 55
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=27.27 E-value=26 Score=23.74 Aligned_cols=9 Identities=11% Similarity=0.202 Sum_probs=7.8
Q ss_pred EEEEEeecC
Q psy9008 38 QLYLTVYWN 46 (89)
Q Consensus 38 ~V~LiGDFN 46 (89)
.|.|.||||
T Consensus 145 ~~ii~GDfN 153 (265)
T 3g91_A 145 NVIICGDFN 153 (265)
T ss_dssp CEEEEEECC
T ss_pred CEEEECccc
Confidence 478899999
No 56
>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A*
Probab=26.38 E-value=8 Score=29.14 Aligned_cols=42 Identities=21% Similarity=0.201 Sum_probs=25.7
Q ss_pred ccCCeEEEEEeecCCCCCCCC-c--ce-ecCceeeeeEEEecCCCCC
Q psy9008 33 APSAQQLYLTVYWNEVSKNGE-R--QE-LESTFLCNAKCFLKDNHIG 75 (89)
Q Consensus 33 APnA~~V~LiGDFN~W~~~~~-~--m~-~e~~~~~~~~~f~~~~~~~ 75 (89)
.|.+.-|.+.||+.+...... . +. ....-. ....+++||||-
T Consensus 77 i~~~D~vi~aGDl~~~g~~~e~~~~~~~L~~l~~-~~v~~V~GNHD~ 122 (296)
T 3rl5_A 77 MPYGDILLHTGDFTELGLPSEVKKFNDWLGNLPY-EYKIVIAGNHEL 122 (296)
T ss_dssp CCSCSEEEECSCCSSSCCHHHHHHHHHHHHTSCC-SEEEECCCTTCG
T ss_pred cCCCCEEEECCcccCCCCHHHHHHHHHHHHhCCC-CeEEEEcCCccc
Confidence 478899999999988743211 0 00 011100 136799999996
No 57
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=26.25 E-value=27 Score=24.81 Aligned_cols=10 Identities=30% Similarity=0.046 Sum_probs=8.3
Q ss_pred EEEEEeecCC
Q psy9008 38 QLYLTVYWNE 47 (89)
Q Consensus 38 ~V~LiGDFN~ 47 (89)
.|.|.||||-
T Consensus 204 pvIl~GDFN~ 213 (318)
T 1hd7_A 204 PLVLCGDLNV 213 (318)
T ss_dssp CEEEEEECSC
T ss_pred CEEEEeeCCC
Confidence 4788999994
No 58
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=25.19 E-value=41 Score=21.81 Aligned_cols=11 Identities=9% Similarity=-0.046 Sum_probs=8.8
Q ss_pred EEEEEeecCCC
Q psy9008 38 QLYLTVYWNEV 48 (89)
Q Consensus 38 ~V~LiGDFN~W 48 (89)
-|.|.||||-.
T Consensus 159 ~vIl~GDfN~~ 169 (256)
T 4fva_A 159 LVFFGGDLNLR 169 (256)
T ss_dssp EEEEEEECCCC
T ss_pred cEEEeccCCCC
Confidence 47889999954
No 59
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=25.04 E-value=12 Score=27.12 Aligned_cols=43 Identities=14% Similarity=0.018 Sum_probs=17.9
Q ss_pred CCeEEEEEee-c-CCCCCCCCccee-----cCceeeeeEEEecCCCCCCC
Q psy9008 35 SAQQLYLTVY-W-NEVSKNGERQEL-----ESTFLCNAKCFLKDNHIGNG 77 (89)
Q Consensus 35 nA~~V~LiGD-F-N~W~~~~~~m~~-----e~~~~~~~~~f~~~~~~~~~ 77 (89)
++..|.+.|| + +...+....+.. ...-..+-..+++||||-..
T Consensus 61 ~~D~vliaGD~l~d~~~~~~~~~~~~~~~l~~L~~~~pv~~i~GNHD~~~ 110 (336)
T 2q8u_A 61 EVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRTAPVVVLPGNHDWKG 110 (336)
T ss_dssp TCSEEEEESCSBSCSSCCCHHHHHHHHHHHHHHHHHSCEEECCC------
T ss_pred CCCEEEECCccccCCCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCccc
Confidence 4567899999 4 444433211100 00000013568999999754
No 60
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=23.77 E-value=17 Score=26.33 Aligned_cols=41 Identities=5% Similarity=-0.038 Sum_probs=22.8
Q ss_pred CCeEEEEEeecCC-CCCCCCc-------cee-cCceeeeeEEEecCCCCCCC
Q psy9008 35 SAQQLYLTVYWNE-VSKNGER-------QEL-ESTFLCNAKCFLKDNHIGNG 77 (89)
Q Consensus 35 nA~~V~LiGDFN~-W~~~~~~-------m~~-e~~~~~~~~~f~~~~~~~~~ 77 (89)
++..|.+.||+-+ +.+.... +.+ .... +-..+++||||...
T Consensus 40 ~~D~vl~~GDl~d~~~~~~~~~~~~~~~l~~l~~~~--~~v~~v~GNHD~~~ 89 (333)
T 1ii7_A 40 NVDFILIAGDLFHSSRPSPGTLKKAIALLQIPKEHS--IPVFAIEGNHDRTQ 89 (333)
T ss_dssp TCSEEEEESCSBSSSSCCHHHHHHHHHHHHHHHTTT--CCEEEECCTTTCCS
T ss_pred CCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHCC--CcEEEeCCcCCCcc
Confidence 5678999999644 3332111 111 0111 13467999999853
No 61
>3pg6_A E3 ubiquitin-protein ligase DTX3L; DNA-damage, metal-binding, nucleus, phosphorylation, chromatin regulator, UBL conjugation pathway, zinc-finger; HET: CIT; 1.70A {Homo sapiens}
Probab=21.97 E-value=50 Score=23.54 Aligned_cols=43 Identities=14% Similarity=0.056 Sum_probs=26.1
Q ss_pred cCCeEEEEEeecCCC-CCCCCcceecCceeeeeEEEecCCCCCC
Q psy9008 34 PSAQQLYLTVYWNEV-SKNGERQELESTFLCNAKCFLKDNHIGN 76 (89)
Q Consensus 34 PnA~~V~LiGDFN~W-~~~~~~m~~e~~~~~~~~~f~~~~~~~~ 76 (89)
|+-..+-++=+|.+- +...||-.-..+....-.||||||..|.
T Consensus 47 ~~~gtI~I~Y~ip~GiQg~~HPnPGk~y~G~~R~AYLPdn~eGr 90 (159)
T 3pg6_A 47 ESFGTIVITYSMKAGIQTEEHPNPGKRYPGIQRTAYLPDNKEGR 90 (159)
T ss_dssp TTSEEEEEEEEECCEECCTTSSSTTCEECCEEEEEEEEESHHHH
T ss_pred CCCCeEEEEEEcCCccccCcCCCCCCccCCCCeEEECCCCHHHH
Confidence 345666666666654 4444544333333446899999998763
No 62
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=20.89 E-value=13 Score=25.96 Aligned_cols=15 Identities=7% Similarity=-0.028 Sum_probs=12.1
Q ss_pred cCCeEEEEEeecCCC
Q psy9008 34 PSAQQLYLTVYWNEV 48 (89)
Q Consensus 34 PnA~~V~LiGDFN~W 48 (89)
+++..|.+.||+-+-
T Consensus 65 ~~~d~vi~~GDl~~~ 79 (330)
T 3ib7_A 65 LRPDAIVFTGDLADK 79 (330)
T ss_dssp CCCSEEEECSCCBTT
T ss_pred CCCCEEEECCCCCCC
Confidence 677889999998654
No 63
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Probab=20.60 E-value=36 Score=22.84 Aligned_cols=41 Identities=12% Similarity=0.022 Sum_probs=23.5
Q ss_pred ccCCeEEEEEeecCCCCCCC-Cc---ceecCceeeeeEEEecCCCCC
Q psy9008 33 APSAQQLYLTVYWNEVSKNG-ER---QELESTFLCNAKCFLKDNHIG 75 (89)
Q Consensus 33 APnA~~V~LiGDFN~W~~~~-~~---m~~e~~~~~~~~~f~~~~~~~ 75 (89)
.|.+.-|.+.||+-+..... .. ....... +-..+++||||-
T Consensus 39 ~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l~--~p~~~v~GNHD~ 83 (274)
T 3d03_A 39 RERPDAVVVSGDIVNCGRPEEYQVARQILGSLN--YPLYLIPGNHDD 83 (274)
T ss_dssp SSCCSEEEEESCCBSSCCHHHHHHHHHHHTTCS--SCEEEECCTTSC
T ss_pred CCCCCEEEECCCCCCCCCHHHHHHHHHHHHhcC--CCEEEECCCCCC
Confidence 36778899999986543211 10 0011111 135689999995
Done!