RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy9008
         (89 letters)



>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE;
          1.70A {Oryza sativa japonica group} PDB: 3amk_A
          Length = 755

 Score = 47.0 bits (112), Expect = 8e-08
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 6  GIEKFTTSYNKYGIHVQADNSVRCFEWAPSAQQLYLT 42
          G+E+F+  Y K+GI+   D +    EWAP+AQ+  L 
Sbjct: 47 GLEEFSKGYLKFGINTV-DGATIYREWAPAAQEAQLI 82


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 31.5 bits (70), Expect = 0.020
 Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 11/33 (33%)

Query: 3  QPSGIEKFTTSYNKYGIHVQADNSVRCFEWAPS 35
          +   ++K   S   Y     AD+S      AP+
Sbjct: 18 EKQALKKLQASLKLY-----ADDS------APA 39


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 26.7 bits (58), Expect = 1.2
 Identities = 9/66 (13%), Positives = 22/66 (33%), Gaps = 21/66 (31%)

Query: 24  DNSVRCFEWAPS-AQQLY----------------LTVYWNEVSKNGERQELESTFLCNAK 66
           ++S+   E  P+  ++++                L++ W +V K+     +    L    
Sbjct: 360 ESSLNVLE--PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK--LHKYS 415

Query: 67  CFLKDN 72
              K  
Sbjct: 416 LVEKQP 421


>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
           RNA helicase, ATP and dsRNA binding antiviral signalling
           pathway; 3.40A {Anas platyrhynchos}
          Length = 797

 Score = 24.9 bits (53), Expect = 4.5
 Identities = 7/30 (23%), Positives = 14/30 (46%)

Query: 10  FTTSYNKYGIHVQADNSVRCFEWAPSAQQL 39
             TS    GI +   N V  +E++ +  ++
Sbjct: 699 IATSVADEGIDIVQCNLVVLYEYSGNVTKM 728


>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta
          strands, similar to P23, lacking LAST beta strand SEEN
          in P23, protein degradation; NMR {Homo sapiens} SCOP:
          b.15.1.3
          Length = 114

 Score = 23.7 bits (51), Expect = 7.8
 Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 1/56 (1%)

Query: 18 GIHVQADNSVRCFEWAPSAQQLYLTVYWNEVSKNGERQELESTFLCNAKCFLKDNH 73
          G H+   + ++ ++W  +  Q+ +T+    V KN    E     L           
Sbjct: 1  GSHMTHQSKIK-YDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGED 55


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.314    0.130    0.400 

Gapped
Lambda     K      H
   0.267   0.0435    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,265,567
Number of extensions: 56465
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 5
Length of query: 89
Length of database: 6,701,793
Length adjustment: 57
Effective length of query: 32
Effective length of database: 5,110,296
Effective search space: 163529472
Effective search space used: 163529472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.2 bits)