RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9008
         (89 letters)



>d1m7xa1 b.1.18.2 (A:117-226) 1,4-alpha-glucan branching enzyme,
          N-terminal domain N {Escherichia coli [TaxId: 562]}
          Length = 110

 Score = 29.2 bits (65), Expect = 0.028
 Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 3/37 (8%)

Query: 13 SYNKYGIHVQADNS---VRCFEWAPSAQQLYLTVYWN 46
           Y   G H    +     R   WAP+A+++ +   +N
Sbjct: 5  PYETLGAHADTMDGVTGTRFSVWAPNARRVSVVGQFN 41


>d2bhua1 b.1.18.2 (A:14-110) Glycosyltrehalose trehalohydrolase,
          N-terminal domain N {Deinococcus radiodurans [TaxId:
          1299]}
          Length = 97

 Score = 27.5 bits (61), Expect = 0.095
 Identities = 6/35 (17%), Positives = 12/35 (34%), Gaps = 1/35 (2%)

Query: 14 YNKYGIHVQADNSVRCFE-WAPSAQQLYLTVYWNE 47
            + G       +   F  W  +A+ + + V   E
Sbjct: 9  RTRLGATPLPGGAGTRFRLWTSTARTVAVRVNGTE 43


>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae
          [TaxId: 4932]}
          Length = 87

 Score = 23.5 bits (50), Expect = 2.9
 Identities = 3/18 (16%), Positives = 8/18 (44%)

Query: 30 FEWAPSAQQLYLTVYWNE 47
            W     ++Y+T  + +
Sbjct: 8  IRWQQGGSKVYVTGSFTK 25


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.130    0.400 

Gapped
Lambda     K      H
   0.267   0.0525    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 323,636
Number of extensions: 12210
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 4
Length of query: 89
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 36
Effective length of database: 1,679,906
Effective search space: 60476616
Effective search space used: 60476616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.4 bits)